New junction evidence | |||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|
seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
* | ? | NC_021214 | 454940 = | 323 (0.930) | 6 (0.020) | 5/434 | 25.0 | 1.8% | coding (1064/1104 nt) | TMARI_RS02195 | pectate trisaccharide‑lyase |
? | NC_021214 | 1085145 = | 326 (0.980) | coding (728/759 nt) | TMARI_RS05450 | DeoR/GlpR transcriptional regulator | |||||
Rejected: Coverage evenness skew score above cutoff. | |||||||||||
Rejected: Frequency below/above cutoff threshold. |
GTCGATGTCCATCAGTACCAGTCTTGACCCATACAAATCCGGTGTCTTCGCCAGGTCCCCTACCAGCTTGATCGTGTACCTCACACTCCCCGCTCCTACAAATACTATGGTAGGCATGTGTGCACCTCCTCTAAATTCCGGGTAATGGTTCAAATACAAAGAGGGGGTCTCCCCCCTCCAAATGTTAACGGATTGGTTGATGATAATTACTGAGCCGTATTTAGTTCTTCAAACACCAGTTTCCCTG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_021214/455186‑454940 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tttccctgAATATTTCATATTGATTTTCTGGAGGTTTTCTGTCGGTGATGAGATGATCGATTTTTTCTGCGGGTATCAGATGTGCCAGCGATCTTTTTCCTATTTTGCTGAAGTCAGCGAGTACGAAGATCTCTTCCGCTCTTTCCACGAAAATTCCTTTTATTCCCATTTCCATGGTGTTTATTTCGTAGGTTCCTTCTTCCGCAGTCACTCCTCTACAGGAGACAAAGGCTTTTTTCACAGAGA > NC_021214/1085145‑1085382 GTCGATGGCCATCATTACCAGTCTTCACCCATACAAATCCGGTGTCTTCGCCAGGTCCCCTACCAGCTTGATCGTGTACCTCACACTCCCCGCTCCTACAAATACTATGGTAGGCATGTGTGCACCTCCTCTAAATTCCGGGTAATGGTTCAAATACAAAGAGGGGGTCTCCCCCCTCCAAATGTTAACGGATTGGTTGATGATAATTACTGAGCCGTATTTAGTTCTTCAAACACCAGT < 2:173971/240‑1 TCGATGTCCATCAGTACCAGTCTTGACCCATACAAATCCGGTGTCTTCGCCAGGTCCCCTACCAGCTTGATCGTGTACCTCACACTCCCCGCTCCTACAAATACTATGGTAGGCATGTGTGCACCTCCTCTAAATTCCGGGTAATGGTTCAAATACAAAGAGGGGGTCTCCCCCCTCCAAATGTTAACGGATTGGTTGATGATAATTACTGAGCCGTATTTAGTTCTTCAAACACCAGTT < 2:1240786/240‑1 TCGATGTCCATCAGTACCAGTCTTGACCCATACAAATCCGGTGTCTTCGCCAGGTCCCCTACCAGCTTGATCGTGTACCTCACACTCCCCGCTCCTACAAATACTATGGTAGGCATGTGTGCACCTCCTCTAAATTCCGGGTAATGGTTCAAATACAAAGAGGGGGTCTCCCCCCTCCAAATGTTAACGGATTGGTTGATGATAATTACTGAGCCGTATTTAGTTCTTCAAACACCAGTT > 1:902193/1‑240 CGATGTCCATCAGTACCAGTCTTGACCCATACAAATCCGGTGTCTTCGCCAGGTCCCCTACCAGCTTGATCGTGTACCTCACACTCCCCGCTCCTACAAATACTATGGTAGGCATGTGTGCACCTCCTCTAAATTCCGGGTAATGGTTCAAATACAAAGAGGGGGTCTCCCCCCTCCAAATGTTAACGGATTGGTTGATGATAATTACTGAGCCGTATTTAGTTCTTCAAACACCAGTT < 1:7687/239‑1 GATGTCCATCAGTACCAGTCTTGACCCATACAAATCCGGTGTCTTCGCCAGGTCCCCTACCAGCTTGATCGTGTACCTCACACTCCCCGCTCCTACAAATACTATGGTAGGCATGTGTGCACCTCCTCTAAATTCCGGGTAATGGTTCAAATACAAAGAGGGGGTCTCCCCCCTCCAAATGTTAACGGATTGGTTGATGATAATTACTGAGCCGTATTTAGTTCTTCAAACACCAGTTTC < 1:252599/240‑1 GATGTCCATCAGTACCAGTCTTGACCCATACAAATCCGGTGTCTTCGCCAGGTCCCCTACCAGCTTGATCGTGTACCTCACACTCCCCGCTCCTACAAATACTATGGTAGGCATGTGTGCACCTCCTCTAAATTCCGGGTAATGGTTCAAATACAAAGAGGGGGTCTCCCCCCTCCAAATGTTAACGGATTGGTTGATGATAATTACTGAGCCGTATTTAGTTCTTCAAACACCAGTTT > 1:1270619/1‑239 ATGTCCATCAGTACCAGTCTTGACCCATACAAATCCGGTGTCTTCGCCAGGTCCCCTACCAGCTTGATCGTGTACCTCACACTCCCCGCTCCTACAAATACTATGGTAGGCATGTGTGCACCTCCTCTAAATTCCGGGTAATGGTTCAAATACAAAGAGGGGGTCTCCCCCCTCCAAATGTTAACGGATTGGTTGATGTTAATTACTGAGCCGTATTTAGTTCTTCAAACACCATTTTC > 1:1192204/1‑239 ATGTCCATCAGTACCAGTCTTGACCCATACAAATCCGGTGTCTTCGCCAGGTCCCCTACCAGCTTGATCGTGTACCTCACACTCCCCGCTCCTACAAATACTATGGTAGGCATGTGTGCACCTCCTCTAAATTCCGGGTAATGGTTCAAATACAAAGAGGGGGTCTCCCCCCTCCAAATGTTAACGGATTGGTTGATGATAATTACTGAGCCGTATTTAGTTCTTCAAACACCAGTTTC > 1:769074/1‑239 GTCCTTCATTACCGCTCTTGACCCATATAAACCCCGTGTCTTCGCCAGGTCCCTCTCCGGCTTGATCGTGTCCCTCTCACCCCCCGCTCCTACAAATGCTATGGTAGGCATGTGTGCACCTTCTCTAAATTCCGGGTAATGGTTCAAATACAAAGAGGGGGTCTCGCCCCTCCAAATGTTAACGGATTGGTTGACGATAATTACTGAGCCGTATTTAGTTCTTCAAACACCAGTTTCCCT < 2:1394331/240‑1 GTCCATCAGTACCAGTCTTGACCCATACAAATCCTGTGTCTTCGCCAGGTCCCCTACCAGCTTGATCGTGTACCTCACACTCCCCGCTCCTACAAATACTATGGTAGGCATGTGTGCACCTCCTCTAAATTCCGGGTAATGGTTCAAATACAAAGAGGGGGTCTCCCCCCTCCAAATGTTAACGGATTGGTTGATGATAATTACTGAGCCGTATTTAGTTCTTCAAACACCAGTTTCCCT < 1:1455476/240‑1 GTCCATCAGTACCAGTCTTGACCCATACAAATCCGGTGTCTTCGCCTGGTCCCCTTCCAGCTTGATCGTGTACCTCACACTCCCCGCTCCTACAAATACTATGGTAGGCATGTGTGCACCTCCTCTAAATTCCGGGTAATGGTTCAAATACAAAGAGGGGGTCTCCCCCCTCCAAATGTTAACGGATTGGTTGATGATAATTACTGAGCCGTATTTAGTTCTTCAACCACCAGTTTCCCT < 2:316298/240‑1 GTCCATCAGTACCAGTCTTGACCCATACAAATCCGGTGTCTTCGCCAGGTCCCCTACCAGCTTGATCGTGTACCTCACACTCCCCGCTCCTACAAATACTATGGTAGGCATGTGTGCACCTCCTCTAAATTCCGGGTAATGGTTCAAATACAAAGAGGGGGTCTCCCCCCTCCAAATGTTAACGGATTGGTTGATGATAATTACTGAGCCGTATTTAGTTCTTCAAACACCAGTTTCCCT < 1:845931/240‑1 ATACAAATCCGGTGTCTTCGCCAGGTCCCCTACCAGCTTGATCGTGTACCTCACACTCCCCGCTCCTACAAATACTATGGTAGGCATGTGTGCACCTCCTCTAAATTCCGGGTAATGGTTCAAATACAAAGAGGGGGTCTCCCCCCTCCAAATGTTAACGGATTGGTTGATGATAATTACTGAGCCGTATTTAGTTCTTCAAACACCAGTTTCCCTGAATATTTCATATTGATTTTCTGG > 1:250986/1‑240 TTGATCGTGTACCTCACACTCCCCGCTCCTACAAATACTATGGTAGGCATGTGTGCACCTCCTCTAAATTCCGGGTAATGGTTCAAATACAAAGAGGGGGTCTCCCCCCTCCAAATGTTAACGGATTGGTTGATGATAATTACTGAGCCGTATTTAGTTCTTCAAACACCAGTTTCCCTGAATATTTCATATTGATTTTCTGGAGGTTTTCTGTCGGTGATGAGATGATCGATTTTT > 1:364573/1‑237 GTGCACCTCCTCTAAATTCCGGGTAATGGTTCAAATACAAAGAGGGGGTCTCCCCCCTCCAAATGTTAACGGATTGGTTGATGATAATTACTGAGCCGTATTTAGTTCTTCAAACACCAGTTTCCCTGAATATTTCATATTGATTTTCTGGAGGTTTTCTGTCGGTGATGAGATGATCGATTTTTTCTGCGGGTATCAGATGTGCCAGCGATCTTTTTCCTATTTTGCTGAAGTCAGCGA > 1:1159991/1‑240 GCACCTCCTCTAAATTCCGGGTAATGGTTCAAATACAAAGAGGGGGTCTCCCCCCTCCAAATGTTAACGGATTGGTTGATGATAATTACTGAGCCGTATTTAGTTCTTCAAACACCAGTTTCCCTGAATATTTCATATTGATTTTCTGGAGGTTTTCTGTCGGTGATGAGATGATCGATTTTTTCTGCGGGTATCAGATGTGCCAGCGATCTTTTTCCTATTTTGCTGAAGTCAGCGAG < 2:1159991/239‑1 CTAAATTCCGGGTAATGGTTCAAATACAAAGAGGGGGTCTCCCCCCTCCAAATGTTAACGGATTGGTTGATGATAATTACTGAGCCGTATTTAGTTCTTCAAACACCAGTTTCCCTGAATATTTCATATTGATTTTCTGGAGGTTTTCTGTCGGTGATGAGATGATCGATTTTTTCTGCGGGTATCAGATGTGCCAGCGATCTTTTTCCTATTTTGCTGAAGTCAGCGAGTACGAAGATC < 2:250986/240‑1 CTAAATTCCGGGTAATGGTTCAAATACAAAGAGGGGGTCTCCCCCCTCCAAATGTTAACGGATTGGTTGATGATAATTACTGAGCCGTATTTAGTTCTTCAAACACCAGTTTCCCTGAATATTTCATATTGATTTTCTGGAGGTTTTCTGTCGGTGATGAGATGATCGATTTTTTCTGCGGGTATCAGATGTGCCAGCGATCTTTTTCCTATTTTGCTGAAGTCAGCGAGTACGAAGATC < 2:364573/240‑1 TTCCCTGAATATTTCATATTGATTTTCTGGAGGTTTTCTGTCGGTGATGAGATGATCGATTTTTTCTGCGGGTATCAGATGTGCCAGCGATCTTTTTCCTATTTTGCTGAAGTCAGCGAGTACGAAGATCTCTTCCGCTCTTTCCACGAAAATTCCTTTTATTCCCATTTCCATGGTGTTTATTTCGTAGGTTCCTTCTTCCGCAGTCACTCCTCTACAGGAGACAAAGGCTTTTTTCAC < 1:993524/240‑1 TTCCCTGAATATTTCATATTGATTTTCTGGAGGTTTTCTGTCGGTGATGAGATGATCGATTTTTTCTGCGGGTATCAGATGTGCCAGCGATCTTTTTCCTATTTTGCTGAAGTCAGCGAGTACGAAGATCTCTTCCGCTCTTTCCACGAAAATTCCTTTTATTCCCATTTCCATGGTGTTTATTTCGTAGGTTCCTTCTTCCGCAGTCACTCCTCTACAGGAGACAAAGGCTTTTTTCAC < 1:249650/240‑1 TTCCCTGAATATTTCATATTGATTTTCTGGAGGTTTTCTGTCGGTGATGAGATGATCGATTTTTTCTGCGGGTATCAGATGTGCCAGCGATCTTTTTCCTATTTTGCTGAAGTCAGCGAGTACGAAGATCTCTTCCGCTCTTTCCACGAAAATTCCCTTTATTCCCATTTCCATGGTGTTTATTTCGTAGGTTCCTTCTTCCGCAGTCACTCCTCTACAGGAGACAAAGGCTTTTTTCAC < 1:600997/240‑1 TTCCCTGAATATTTCATATTGAATGTCTGGAGGTTTTCTGTCGGTGATGAGATGATCGATTTTTTCTGCGGGTATCAGATGTGCCAGCGATCTTGTTCCTATTTTGCTGAAGTCAGCGAGTACGAAGATCTCTTCCGCTCTTTCCACGAAAATTCCTTTTATTCCCATTTCCATGGTGTTTATTTCGTAGTTTCCTTCTTCCGCAGTCACTCCTCTACAAGAGACAAAGGCTTTTTTCAC < 2:839323/240‑1 CCCTGAATATTTCATATTGATTTTCTGGAGGTTTTCTGTCGGTGATGAGATGATCGATTTTTTCTGCGGGTATCAGATGTGCCAGCGATCTTTTTCCTATTTTGCTGAAGTCAGCGAGTACGAAGATCTCTTCCGCTCTTTCCACGAAAATTCCTTTTATTCCCATTTCCATGGTGTTTATTTCGTAGGTTCCTTCTTCCGCAGTCACTCCTCTACAGGAGACAAAGGCTTTTTTCACAG < 2:703964/240‑1 CCCTGAATATTTCATATTGATTTTCTGGAGGTTTTCTGTCGGTGATGAGATGATCGATTTTTTCTGCGGGTATCAGATGTGCCAGCGATCTTTTTCCTATTTTGCTGAAGTCAGCGAGTACGAAGATCTCTTCCGCTCTTTCCACGAAAATTCCTTTTATTCCCATTTCCATGGTGTTTATTTCGTAGGTTCCTTCTTCCGCAGTCACTCCTCTACAGGAGACAAAGGCTTTTTTCACAG < 1:907765/240‑1 CCTGAATATTTCATATTGATTTTCTGGAGGTTTTCTGTCGGTGATGAGATGATCGATTTTTTCTGCGGGTATCAGATGTGCCAGCGATCTTTTTCCTATTTTGCTGAAGTCAGCGAGTACGAAGATCTCTTCCGCTCTTTCCACGAAAATTCCTTTTATTCCCATTTCCATGGTGTTTATTTCGTAGGTTCCTTCTTCCGCAGTCACTCCTCTACAGGAGACAAAGGCTTTTTTCACAGA > 1:704994/1‑240 TGAATATTTCATATTTATTTTCTGGAGGTTTTCTGTCGGTGATGAGATGATCGATTTTTTCTGCGGGTATCAGATGTGCCAGCGATCTTTTTCCTATTTTGCTGAAGTCAGCGAGTACGAAGATCTCTTCCGCTCTTTCCACGAAAATTCCTTTTATTCCCATTTCCATGGTGTTTATTTCGT < 2:569947/183‑1 TGAATATTTCATATTTATTTTCTGGAGGTTTTCTGTCGGTGATGAGATGATCGATTTTTTCTGCGGGTATCAGATGTGCCAGCGATCTTTTTCCTATTTTGCTGAAGTCAGCGAGTACGAAGATCTCTTCCGCTCTTTCCACGAAAATTCCTTTTATTCCCATTTCCATGGTGTTTATTTCGT > 1:569947/1‑183 TGAATATTTCATATTGATTTTCTGGAGGTTTTCTGTCGGTGATGAGATGATCGATTTTTTCTGCGGGTATCAGATGTGCCAGCGATCTTTTTCCTATTTTGCTGAAGTCAGCGAGTACGAAGATCTCTTCCGCTCTTTCCACGAAAATTCCTTTTATTCCCATTTCCATGGTGTTTATTTCGTAGGTTCCTTCTTCCGCAGTCACTCCTCTACAGGAGACAAAGGCTTTTTTCACAGAGA > 2:27393/1‑240 TGAATATTTCATATTGATTTTCTGGAGGTTTTCTGTCGGTGATGAGATGATCGATTTTTTCTGCGGGTATCAGATGTGCCAGCGATCTTTTTCCTATTTTGCTGAAGTCAGCGAGTACGAAGATCTCTTCCGCTCTTTCCACGAAAATTCCTTTTATTCCCATTTCCATGGTGTTTATTTCGTAGGTTCCTTCTTCCGCAGTCACTCCTCTACAGGAGACAAAGGCTTTTTTCACAGAGA > 2:481035/1‑240 TGAATATTTCATATTGATTTTCTGGAGGTTTTCTGTCGGTGATGAGATGATCGATTTTTTCTGCGGGTATCAGATGTGCCAGCGATCTTTTTCCTATTTTGCTGAAGTCAGCGAGTACGAAGATCTCTTCCGCTCTTTCCACGAAAATTCCTTTTATTCCCATTTCCATGGTGTTTATTTCGTAGGTTCCTTCTTCCGCAGTCACTCCTCTACAGGAGACAAAGGCTTTTTTCACAGAGA > 2:496096/1‑240 TGAATATTTCATATTGATTTTCTGGAGGTTTTCTGTCGGTGATGAGATGATCGATTTTTTCTGCGGGTATCAGATGTGCCAGCGATCTTTTTCCTATTTTGCTGAAGTCAGCGAGTACGAAGATCTCTTCCGCTCTTTCCACGAAAATTCCTTTTATTCCCATTTCCATGGTGTTTATTTCGTAGGTTCCTTCTTCCGCAGTCACTCCTCTACAGGAGACAAAGGCTTTTTTCACAGAGA > 2:895086/1‑240 GTCGATGTCCATCAGTACCAGTCTTGACCCATACAAATCCGGTGTCTTCGCCAGGTCCCCTACCAGCTTGATCGTGTACCTCACACTCCCCGCTCCTACAAATACTATGGTAGGCATGTGTGCACCTCCTCTAAATTCCGGGTAATGGTTCAAATACAAAGAGGGGGTCTCCCCCCTCCAAATGTTAACGGATTGGTTGATGATAATTACTGAGCCGTATTTAGTTCTTCAAACACCAGTTTCCCTG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_021214/455186‑454940 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tttccctgAATATTTCATATTGATTTTCTGGAGGTTTTCTGTCGGTGATGAGATGATCGATTTTTTCTGCGGGTATCAGATGTGCCAGCGATCTTTTTCCTATTTTGCTGAAGTCAGCGAGTACGAAGATCTCTTCCGCTCTTTCCACGAAAATTCCTTTTATTCCCATTTCCATGGTGTTTATTTCGTAGGTTCCTTCTTCCGCAGTCACTCCTCTACAGGAGACAAAGGCTTTTTTCACAGAGA > NC_021214/1085145‑1085382 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 28 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
Reads not counted as support for junction |
read_name Not counted due to insufficient overlap past the breakpoint. |
read_name Not counted due to not crossing MOB target site duplication. |