New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_021214	= 1805887	NA (NA)	6 (0.020) +TTCTCGCTCCCTGTGCTAATTGTAACACAGTCGAGCTACAACAACCACTTA	5/348	19.5	1.7%	coding (374/390 nt)	TMARI_RS09375	IS200/IS605 family transposase
	?	NC_021214	1806312 =	459 (1.370)					coding (635/663 nt)	TMARI_RS09380	methyl‑accepting chemotaxis protein
Rejected: Coverage evenness skew score above cutoff.
Rejected: Frequency below/above cutoff threshold.

GTATTTGTCTGCGGTGGGCCAGGACAGCCAGAAGCCTTTCTTTTGGTGTATCTTTCGCACAAGAGACATCGTTTTGTTGTAGATTCTTGCTGCTGTGCGGTTGAGTTCTTCGCATGTTTGACTCAGGTGTCCTGGTACGGCGAGTTTGTAGGTTCGTATCACACGTCTTGACATT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_021214/1805713‑1805887 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑CTATCCCCCTGAAGGAGGATAG‑‑TAAGTGGTTGGGGTTCTGTCACAGTTTCATGGTTATCAAAAGAATGAGGAAAATTACTCAAAAGTCTCTCCAGGAGTGTTTCAAC  >  NC_021214/1806312‑1806418                                                                                                                                                                                |||||||||||||||||||||||||||||||||||||||||||||||||||                                                                                                              GTATTTGTCTGCGGTGGGCCAGGACAGCCAGAAGCCTTTCTTTTGGTGTATCTTTCGCACAAGAGTCATCGTTTTGTTGTAGATTCTTGCTGCTGTGCGGTTGAGTTCTTCGCATGTTTGACTCAGGTGTCCTGGTATGGCTAGTTTGTAGGTTCGTATCACACGTCTGGGCATTTTCTCGCTCCCTGTGCTAATTGTAACACAGTCGAGCTACAACAACCACTTACTATCTCCCTGAA                                                                                                  <  2:524876/239‑1                                                              AGAGACATCGTTTTGTTGTAGATTCTTGCTGCGATGCGGTTGAGTTCTTCGCATATTTGATTCAAATGTCCTGGTATGGCGAGTTTGTAGGTTCGTATCACACGTCTGGGCATTTTCTCGCTCCCTGTGCTAATTGTAACACAGTCGAGCTACAACAACCACTTACTATCCCCCTGAAGGAGGATAG‑‑TAAGTGGTTGGGGTTCTGTCACAGTTTCATGGTTATCAAAAGAATGAGGAAA                                   >  1:411058/1‑239                                                               tAGACATCGTTTTGTTGTAGATTCTTGCTGCAGTGCGGTTGAGTTCTTCGCATGTTTGACTCAGGTGTCCTGGTACGGCGAGTTTGTAGGTTCGTATCACACGTCCGGGCATTTTCTCGCTCCCTGTGCTAATTGTAACACAGTCGAGCTACAACAACCACTTACTATCTCCCTGAAGGAGAATA                                                                                          >  2:864833/2‑185                                                                                                TGCGGTTGAGTTCTTCGCATATTTGATTCAAATGTCCTGGTATGGCGAGTTTGTAGGTTCGTATCACACGTCTGGGCATTTTCTCGCTCCCTGTGCTAATTGTAACACAGTCGAGCTACAACAACCACTTACTATCCCCCTGAAGGAGGATAG‑‑TAAGTGGTTGGGGTTCTGTCACAGTTTCATGGTTATCAAAAGAATGAGGAAAATTACTCAAAAGTCTCTCCAGGAGTGTTTCAAC  <  2:411058/238‑1                                                                                                       GAGTTCTTCGCATATTTGATTCAAATGTCCTGGTATGGCGAGTTTGTAGGTTCGTATCACACGTCTGGGCATTTTCTCGCTCCCTGTGCTAATTGTAACACAGTCGAGCTACAACAACCACTTACTATCTCCCTGAAGGAGAATAGCTTGCGTGGTTGGGGTTCTGTCACAGTTTCATGGTTATCAAAAGAATGAGGAAAATTACTCA                           <  1:101930/208‑1                                                                                                       GAGTTCTTCGCATATTTGATTCAAATGTCCTGGTATGGCGAGTTTGTAGGTTCGTATCACACGTCTGGGCATTTTCTCGCTCCCTGTGCTAATTGTAACACAGTCGAGCTACAACAACCACTTACTATCTCCCTGAAGGAGAATAGCTTGCGTGGTTGGGGTTCTGTCACAGTTTCATGGTTATCAAAAGAATGAGGAAAATTACTCA                           >  2:101930/1‑208                                                                                                                                                                                |||||||||||||||||||||||||||||||||||||||||||||||||||                                                                                                              GTATTTGTCTGCGGTGGGCCAGGACAGCCAGAAGCCTTTCTTTTGGTGTATCTTTCGCACAAGAGACATCGTTTTGTTGTAGATTCTTGCTGCTGTGCGGTTGAGTTCTTCGCATGTTTGACTCAGGTGTCCTGGTACGGCGAGTTTGTAGGTTCGTATCACACGTCTTGACATT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_021214/1805713‑1805887 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑CTATCCCCCTGAAGGAGGATAG‑‑TAAGTGGTTGGGGTTCTGTCACAGTTTCATGGTTATCAAAAGAATGAGGAAAATTACTCAAAAGTCTCTCCAGGAGTGTTTCAAC  >  NC_021214/1806312‑1806418

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 18 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.