Frequency Filtering Thresholds

Minimum Cutoff:       Maximum Cutoff:

Ignored Genes

Enter gene(s) separated by ',' ex: tpoB,folD

Ignored Mutations

Mut ID Position Mutation Type Sequence Change Gene Function Product GO Process GO Component Details
1919078 794460 SNP C→T
dgcE
diguanylate cyclase A568V (GCG→GTG)
1919079 917427 INS +TT
yeiP, yeiQ
elongation factor P-like protein YeiP/mannitol dehydrogenase family protein intergenic (+130/‑91)
1919083 3196873 INS +GCGTAATCGGTT
ampC
BlaEC family class C beta-lactamase coding (944/1122 nt)
1919084 4870914 DEL Δ1 bp
dhaK, dhaR
dihydroxyacetone kinase subunit DhaK/dihydroxyacetone kinase operon transcriptional regulator DhaR intergenic (‑110/‑118)
2114415 601302 SNP T→G
irp1
yersiniabactin polyketide synthase HMWP1 R1609R (CGT→CGG)
2114416 628478 DEL Δ1,286 bp
clbP
[clbP]
2114418 756115 SNP A→G
galE
UDP-glucose 4-epimerase GalE G181G (GGT→GGC)
2114435 957112 SNP T→G
ccmA
cytochrome c biogenesis heme-transporting ATPase CcmA T89P (ACC→CCC)
2114490 1954923 SNP T→G
ttdR
DNA-binding transcriptional activator TtdR T92P (ACG→CCG)
2114514 2214419 SNP T→C
rpsL
30S ribosomal protein S12 K43R (AAA→AGA)
2114515 2320775 SNP C→T
CIW80_RS11675
DNA-processing protein DprA G274S (GGC→AGC)
2114553 2868740 SNP T→G
fdoH
formate dehydrogenase O subunit beta Q22P (CAG→CCG)
2114586 3424795 SNP A→C
yjiJ, yjiK
MFS transporter/YjiK family protein intergenic (‑41/+27)
2114593 3461229 SNP T→G
CIW80_RS17340
tRNA-Leu noncoding (84/87 nt)
2114602 3656188 SNP A→G
htrE
outer membrane usher protein S549P (TCC→CCC)
2114607 3731466 SNP T→C
rrf, CIW80_RS18620
5S ribosomal RNA/tRNA-Asp intergenic (+20/‑35)
2114608 3731470 SNP C→T
rrf, CIW80_RS18620
5S ribosomal RNA/tRNA-Asp intergenic (+24/‑31)
2114609 3731473 DEL Δ1 bp
rrf, CIW80_RS18620
5S ribosomal RNA/tRNA-Asp intergenic (+27/‑28)
2114610 3734367 SNP T→G
yafD
endonuclease/exonuclease/phosphatase family protein F225V (TTT→GTT)
2114617 3792805 SNP A→G
fucP
L-fucose:H+ symporter permease Y421C (TAC→TGC)
2114658 457895 DEL Δ1 bp
CIW80_RS02445
DUF968 domain-containing protein pseudogene (287/997 nt)
2114659 2408862 DEL Δ1 bp
mdtF
multidrug efflux pump RND permease MdtF pseudogene (1098/3115 nt)
2114660 2590564 INS +TGGT
CIW80_RS26455
hypothetical protein coding (110/153 nt)
2114672 829441 SNP C→A
gatY, fbaB
tagatose-bisphosphate aldolase subunit GatY/class I fructose-bisphosphate aldolase intergenic (‑30/+197)
2114764 1000431 SNP T→G
yfaL
AIDA-I family autotransporter adhesin YfaL/EhaC D945A (GAC→GCC)
2114992 829435 SNP C→A
gatY, fbaB
tagatose-bisphosphate aldolase subunit GatY/class I fructose-bisphosphate aldolase intergenic (‑24/+203)
2115005 1504361 SNP G→T
CIW80_RS07520
YgcG family protein V266V (GTG→GTT)
2115941 2031 SNP G→A
putative rom (RNA I inhibition modulator protein), ompA
–/– intergenic (‑235/‑1500)
2115942 3595 DEL Δ15 bp
IL2wt no signal
[IL2wt no signal]
2115944 4809 INS +A
annotated as hok_sok locus, putative HTH domain protein
–/– intergenic (‑174/+400)
2115945 4868 DEL Δ1 bp
annotated as hok_sok locus, putative HTH domain protein
–/– intergenic (‑233/+341)
2115961 3607152 SNP T→A
secA
preprotein translocase subunit SecA W622R (TGG→AGG)
2115979 1213456 SNP A→C
eutE
aldehyde dehydrogenase EutE L428R (CTG→CGG)
2115980 1213462 SNP A→C
eutE
aldehyde dehydrogenase EutE L426R (CTG→CGG)
2116166 3509100 DEL Δ12 bp
dnaK
molecular chaperone DnaK coding (1567‑1578/1917 nt)
2116167 3660810 SNP C→A
pcnB
polynucleotide adenylyltransferase PcnB R245L (CGC→CTC)

Starting Strain Mutations

Mut ID Position Mutation Type Sequence Change Gene Function Product GO Process GO Component Details