Frequency Filtering Thresholds

Minimum Cutoff:       Maximum Cutoff:

Ignored Genes

Enter gene(s) separated by ',' ex: tpoB,folD

Ignored Mutations

Mut ID Position Mutation Type Sequence Change Gene Function Product GO Process GO Component Details
629766 35814 DEL Δ1 bp
rlmH, tpn
hypothetical protein/IS431mec transposase intergenic (+45/+63)
629767 35817 SNP A→T
rlmH, tpn
hypothetical protein/IS431mec transposase intergenic (+48/+60)
629768 35850 SNP C→T
rlmH, tpn
hypothetical protein/IS431mec transposase intergenic (+81/+27)
629769 35858 SNP T→A
rlmH, tpn
hypothetical protein/IS431mec transposase intergenic (+89/+19)
629770 35876 SNP C→T
rlmH, tpn
hypothetical protein/IS431mec transposase intergenic (+107/+1)
629794 36581 SNP C→T
tpn, USA300HOU_0028
IS431mec transposase/hypothetical protein intergenic (‑30/‑493)
629824 76265 SNP C→T
USA300HOU_0072, USA300HOU_0075
universal stress protein/lysophospholipase intergenic (+323/‑811)
629825 76295 SNP T→C
USA300HOU_0072, USA300HOU_0075
universal stress protein/lysophospholipase intergenic (+353/‑781)
629826 76322 SNP G→A
USA300HOU_0072, USA300HOU_0075
universal stress protein/lysophospholipase intergenic (+380/‑754)
629827 76353 SNP G→A
USA300HOU_0072, USA300HOU_0075
universal stress protein/lysophospholipase intergenic (+411/‑723)
629898 111512 SNP A→G
USA300HOU_0110
possible staphylococcal tandem lipoprotein S194S (TCA→TCG)
629899 111516 SNP C→A
USA300HOU_0110
possible staphylococcal tandem lipoprotein Q196K (CAA→AAA)
630209 512643 SNP A→G
recR, rrs1
recombination protein RecR/16S ribosomal RNA intergenic (+711/‑150)
631158 1416458 SNP A→T
oppD
oligopeptide ABC superfamily ATP binding cassette transporter, ABC protein I216N (ATT→AAT)
631244 1513930 SNP A→T
USA300HOU_1379
hypothetical membrane protein L413F (TTA→TTT)
631374 1646189 SNP G→C
pepP
M24B family Xaa-Pro dipeptidase A155G (GCA→GGA)
631760 2010363 SNP C→T
ygaD
ABC superfamily ATP binding cassette transporter, membrane protein C146Y (TGT→TAT)
632037 2279705 SNP G→A
mtlD, glmM
mannitol-1-phosphate 5-dehydrogenase/phosphoglucosamine mutase intergenic (+1373/+6659)
632296 2532298 SNP A→T
murN
FemAB family peptidoglycan biosynthesis protein T15T (ACA→ACT)
636990 2557393 SNP A→G
glxK
glycerate kinase D281G (GAT→GGT)

Starting Strain Mutations

Mut ID Position Mutation Type Sequence Change Gene Function Product GO Process GO Component Details