Frequency Filtering Thresholds

Minimum Cutoff:       Maximum Cutoff:

Ignored Genes

Enter gene(s) separated by ',' ex: tpoB,folD

Ignored Mutations

Mut ID Position Mutation Type Sequence Change Gene Function Product GO Process GO Component Details
1124526 81 SNP N→G
–, repA
–/replication protein A intergenic (–/‑151)
1124527 6552 INS +28 bp
cadX, USA300HOU_pUSA300HOUMR0010
cadmium efflux regulator/MarR family transcriptional regulator intergenic (+1069/‑419)
1124528 25669 DEL (A)7→6
USA300HOU_pUSA300HOUMR0031
hypothetical protein coding (322/333 nt)
1124529 1185824 SNP A→G
bshC
Putative cysteine ligase BshC D531G (GAT→GGT)
1124530 1416458 SNP A→T
oppD_4
Oligopeptide transport ATP-binding protein OppD I216N (ATT→AAT)
1124531 1513930 SNP A→T
USA300HOU_RS07375
hypothetical protein L413F (TTA→TTT)
1124532 1646189 SNP G→C
ypdF
Aminopeptidase YpdF A155G (GCA→GGA)
1124533 2010363 SNP C→T
USA300HOU_RS10125
Putative multidrug export ATP-binding/permease protein C146Y (TGT→TAT)
1124534 2187389 SNP C→A
rsbU
Phosphoserine phosphatase RsbU G225V (GGA→GTA)
1124535 2279705 SNP G→A
ebh_3
Extracellular matrix-binding protein ebh A943V (GCA→GTA)
1124536 2532298 SNP A→T
femA_3
Aminoacyltransferase FemA T15T (ACA→ACT)
1124549 25663 DEL Δ1 bp
USA300HOU_pUSA300HOUMR0031
hypothetical protein coding (316/333 nt)
1124551 111512 SNP A→G
USA300HOU_RS00520
putative lipoprotein S194S (TCA→TCG)
1124552 111516 SNP C→A
USA300HOU_RS00520
putative lipoprotein Q196K (CAA→AAA)
1124554 512643 SNP A→G
recR, speA_2
Recombination protein RecR/Arginine decarboxylase intergenic (+711/‑6052)
1124574 517732 SNP T→C
recR, speA_2
Recombination protein RecR/Arginine decarboxylase intergenic (+5800/‑963)

Starting Strain Mutations

Mut ID Position Mutation Type Sequence Change Gene Function Product GO Process GO Component Details