Frequency Filtering Thresholds

Minimum Cutoff:       Maximum Cutoff:

Ignored Genes

Enter gene(s) separated by ',' ex: tpoB,folD

Ignored Mutations

Mut ID Position Mutation Type Sequence Change Gene Function Product GO Process GO Component Details
1124551 111512 SNP A→G
USA300HOU_RS00520
putative lipoprotein S194S (TCA→TCG)
1124552 111516 SNP C→A
USA300HOU_RS00520
putative lipoprotein Q196K (CAA→AAA)
1124611 2372413 SNP C→G
USA300TCH1516_02262, pbuG
hypothetical protein/Guanine/hypoxanthine permease PbuG intergenic (+164/+28)
1124647 9716 SNP T→C
gyrA, nnrD
DNA gyrase subunit A/ADP-dependent (S)-NAD(P)H-hydrate dehydratase intergenic (+21/+66)
1124648 9719 SNP G→A
gyrA, nnrD
DNA gyrase subunit A/ADP-dependent (S)-NAD(P)H-hydrate dehydratase intergenic (+24/+63)
1124708 803528 SNP C→T
USA300HOU_RS03920, dtpT
Putative lipid kinase/Di-/tripeptide transporter intergenic (‑228/+42)
1124709 803539 SNP A→G
USA300HOU_RS03920, dtpT
Putative lipid kinase/Di-/tripeptide transporter intergenic (‑239/+31)
1124945 740322 SNP G→C
pitA_1, sle1_2
Low-affinity inorganic phosphate transporter 1/N-acetylmuramoyl-L-alanine amidase sle1 intergenic (+549/+39)
1126777 707911 SNP C→T
znuC_1, ideR
High-affinity zinc uptake system ATP-binding protein ZnuC/Iron-dependent repressor IdeR intergenic (‑2/‑120)
1126881 367644 SNP G→T
nanA, bglK
N-acetylneuraminate lyase/Beta-glucoside kinase intergenic (‑96/‑62)
1126883 479553 SNP G→A
USA300HOU_RS02280
hypothetical protein A194T (GCA→ACA)
1126884 638614 SNP G→T
pdxK
Pyridoxine kinase T14K (ACA→AAA)
1126887 707879 SNP A→T
znuC_1
High-affinity zinc uptake system ATP-binding protein ZnuC L11I (TTA→ATA)
1126888 790778 SNP G→A
kipA_1, ltaS
KipI antagonist/Lipoteichoic acid synthase intergenic (+277/‑197)
1126892 1232465 SNP G→C
prkC
Serine/threonine-protein kinase PrkC A124P (GCG→CCG)
1126894 1440007 DEL Δ1 bp
cspA_2
Cold shock protein CspA coding (34/201 nt)
1126895 1474639 SNP C→G
ebh_1
Extracellular matrix-binding protein ebh A9129P (GCA→CCA)
1126896 1481355 SNP G→T
ebh_1
Extracellular matrix-binding protein ebh A6890E (GCA→GAA)
1126898 1744454 SNP C→T
apt
Adenine phosphoribosyltransferase G73D (GGC→GAC)
1126900 1797772 SNP G→C
phoR
Alkaline phosphatase synthesis sensor protein PhoR R7G (CGC→GGC)
1126907 2856087 SNP T→A
rpoA_2
DNA-directed RNA polymerase subunit alpha P80P (CCT→CCA)
1127059 333049 SNP G→C
esaA
ESAT-6 secretion accessory factor EsaA A753P (GCA→CCA)
1127060 482712 SNP C→A
USA300HOU_RS02285, USA300HOU_RS02295
hypothetical protein/hypothetical protein intergenic (+509/‑174)
1127091 2216257 SNP G→A
sceD
putative transglycosylase SceD S178L (TCA→TTA)
1127099 2514671 SNP G→A
narX
Nitrate reductase-like protein NarX H54H (CAC→CAT)

Starting Strain Mutations

Mut ID Position Mutation Type Sequence Change Gene Function Product GO Process GO Component Details