Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A18 F4 I5 R1
|
74 |
1140.6 |
72036873 |
99.2% |
71460578 |
99.4 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| MC JC |
AE015451_phaM1 |
5,393,059 |
Δ5,661 bp |
|
[hsdR CDS (Type I restriction enzyme EcoAI R protein)]–[hsdS CDS (Type I restriction‑modification system_ S subunit)] |
[hsdR CDS (Type I restriction enzyme EcoAI R protein)], hsdM CDS (Type I restriction enzyme EcoEI M protein), [hsdS CDS (Type I restriction‑modification system_ S subunit)] |
|
| | | | seq id |
start |
end |
size |
←reads |
reads→ |
gene |
description |
|---|
| * |
* |
÷ |
AE015451_phaM1 |
5393059 |
5398719 |
5661 |
1767 [0] |
[0] 1780 |
[hsdR CDS (Type I restriction enzyme EcoAI R protein)]–[hsdS CDS (Type I restriction‑modification system_ S subunit)] |
[hsdR CDS (Type I restriction enzyme EcoAI R protein)],hsdM CDS (Type I restriction enzyme EcoEI M protein),[hsdS CDS (Type I restriction‑modification system_ S subunit)] |
|
| |
seq id |
position |
reads (cov) |
reads (cov) |
score |
skew |
freq |
annotation |
gene |
product |
| * |
? |
AE015451_phaM1 |
= 5393058 | 0 (0.000) | 1763 (1.540) |
196/196 |
-0.0 |
100% |
intergenic (‑386/‑1) |
PP_5710 CDS (exported protein of unknown function)/hsdR CDS (Type I restriction enzyme EcoAI R protein) |
–/– |
| ? | AE015451_phaM1 |
5398720 = |
0 (0.000) | intergenic (+1/‑10) |
hsdS CDS (Type I restriction‑modification system_ S subunit)/PP_5711 CDS (protein of unknown function) |
–/– |
GATK/CNVnator alignment
N/A
