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Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.

ALE, Flask, Isolate	Predicted Mutations	Mean Coverage	Total Reads	Percent Mapped	Mapped Reads	Average Read Length
A5 F26 I1 R1	57	84.6	3443374	98.5%	3391723	147.1

Breseq alignment

BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
MC JC	NC_002947_CJ‑RC	4,987,685	Δ72 bp	coding (224‑295/753 nt)	flgA →	flagella basal body P‑ring formation protein

Missing coverage evidence...
			seq id	start	end	size	←reads	reads→	gene	description
*	*	÷	NC_002947_CJ‑RC	4987685	4987756	72	80 [1]	[0] 80	flgA	flagella basal body P‑ring formation protein

New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947_CJ‑RC	= 4987684	1 (0.010)	71 (0.920)	61/278	0.2	99.3%	coding (223/753 nt)	flgA	flagella basal body P‑ring formation protein
*	?	NC_002947_CJ‑RC	4987757 =	0 (0.000)	71 (0.920)	61/278	0.2	99.3%	coding (296/753 nt)	flgA	flagella basal body P‑ring formation protein

GATK/CNVnator alignment

N/A