Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A3 F38 I1 R1
|
54 |
64.3 |
2734350 |
98.3% |
2687866 |
146.9 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| JC |
NC_002947_CJ‑RC |
4,982,288 |
+GGC |
intergenic (‑24/+44) |
PP_4387 ← / ← flgE |
hypothetical protein/flagellar hook protein FlgE |
|
| |
seq id |
position |
reads (cov) |
reads (cov) |
score |
skew |
freq |
annotation |
gene |
product |
| * |
? |
NC_002947_CJ‑RC |
= 4982288 | 5 (0.080) | 51 (0.820)
+GGC |
41/286 |
0.7 |
91.2% |
intergenic (‑24/+44) |
PP_4387/flgE |
hypothetical protein/flagellar hook protein FlgE |
| ? | NC_002947_CJ‑RC |
4982289 = |
5 (0.080) | intergenic (‑25/+43) |
PP_4387/flgE |
hypothetical protein/flagellar hook protein FlgE |
GGGCCGAACACAGGTAGCGGCCGGTGACCAGGCTTTGCCATTGATAGAACGGGGCGGGGGCAGCGGGGGCAGGCAGAACCAGCACCAGCAAGGGGAACAAGGCCAGTAACGACAGCCGCTTCATTCGCGTGAACCTTCACATTCTTGG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_002947_CJ‑RC/4982141‑4982288
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑CGC‑TTTGCGGCCCCAATTACAAACACCAAAGCCAATACAATCATCAGGTCATCTGAATGATGGTCTGCATGATGGTGCTTTCAGTGGAAATGGTCTTGGCATTGGCCTGGTAGTTGCTCTGCGCCTTGATCAGGTTTACCAGCTCG > NC_002947_CJ‑RC/4982289‑4982434
|||
GGGCCGAACACAGGTAGCGGCCGGTGACCAGGCTTTGCCATTGATAGAACGGGGCGGAGGCAGCGGGGGCAGGCAGAACCAGCACCAGCAAGGGGACCAAGGCCAGTAACGACAGCCGCTTCATTCGCGTGAACCTTCACATTCTTGGG > 1:177022/1‑149
GCCGAACACAGGTAGCGGCCGGTGACCAGGCTTTGCCATTGATAGAACGGGGCGGGGGCAGCGGGGGCAGGCAGAACCAGCACCAGCAAGGGGAACAAGGCCAGTAACGACAGCCGCTTCATTCGCGTGAACCTTCACATTCTTGGGGC > 8:346447/1‑149
CAGGTAGGGGCCGGTGACCAGGATTTGCCATTGATAGACCGGGGCGGGGGCAGGGGGGGCAGGCAGAACCAGCACCAGCAAGGGGAACAAGGCCAGTAACGACAGCCGCTTCATTCGCGTGAACCTTCACATTCTTGGGGCCGC‑TTTGC < 5:6217/149‑1
CAGGTAGCGGCCGGTGACCAGGCTTTGCCATTGATAGAACGGGGCGGGGGCAGCGGGGGCAGGCAGAACCAGCACCAGCAAGGGGAACAAGGCCAGTAACGACAGCCGCTTCATTCGCGTGAACCTTCACATTCTTGGGGCCGC‑TTTGC < 8:344692/149‑1
TAGCGGCCGGTGACCAGGCTTTGCCATTGATAGACCGGGGCGGGGGCAGCGGGGGCAGGCAGAACCAGCACCAGCAAGGGGAACAAGGCCAGTAACGACAGCCGCTTCATTCGCGTGAACCTTCACATTCTTGGGGCCGC‑TTTGCGGCC < 3:27101/149‑1
TAGCGGCCGGTGACCAGGCTTTGCCATTGATAGAACGGGGCGGGGGCAGCGGGGGCAGGCAGAACCAGCACCAGCAAGGGGAACAAGGCCAGTAACGACAGCCGCTTCATTCGCGTGAACCTTCACATTCTTGGGGCCGC‑TTTGCGGCC < 3:307823/149‑1
CCGGTGACCAGGCTTTGCCATTGATAGAACGGGGCGGGGGCAGCGGGGGCAGGCAGAACCAGCACCAGCAAGGGGAACAAGGCCAGTAACGACAGCCGCTTCATTCGCGTGAACCTTCACATTCTTGGGGGCGG‑GTTGGGGGCCCAATT > 2:153552/1‑149
GGTCACCCGGCTTTGCCATTGATAGACCGGGGCGGGGGCAGCGGGGGCAGGCAGAACCAGCACCAGCAAGGGGAACAAGGCCAGTAACGACAGCCGCTTCATTCGCGTGAACCTTCACATTCTTGGGGCCGC‑TTTGCGGCCCCAATTAC < 1:153552/149‑1
GTGACCAGGCTTTGCCATTCATAGACCGGGGCGGGGGCAGCGGGGGTAGGCAGAACCAGCACCAGCAAGGGGAACAAGGCCAGTAACGACAGCCGCTTCATTCGCGTGAACCTTCACATTCTTGGGGCCGC‑TTTGCGGCCCCAATTACA < 3:206922/149‑1
ACCAGGCTTTGCCATTGATAGAACGGGGCGGGGGCAGCGGGGGCAGGCAGAACCAGCACCAGCAAGGGGAACAAGGCCAGTAACGACAGCCGCTTCATTCGCGTGAACCTTCACATTCTTGGGGCCGC‑TTTGCGGCCCCAATTACAAA < 5:181160/148‑1
CAGGCTTTGCCATTGATAGAACGGGGCGGGGGCAGCGGGGGCAGGCAGAACCAGCACCAGCAAGGGGAACAAGGCCAGTAACGACAGCCGCTTCATTCGCGTGAACCTTCACATTCTTGGGGCCGC‑ATTGCGGCCCCAATTACAAACAC > 7:259446/1‑149
ggcaATTGATTGAAGGGGGCGGGGCCAGCGGGGGCAGGCAGAACCAGCACCAGCAAGGGGAACAAGGCCAGTAACGACAGCCGCTTCATTCGCGTGAACCTTCACATTCTTGGGGCCGC‑TTTGCGGCCCCAATTACAAACACCAAAGC < 4:219108/144‑1
ATTGATAGAACGGGGCGGGGGCAGCGGGGGCAGGCAGAACCAGCACCAGCAAGGGGAACAAGGCCAGTAACGACAGCCGCTTCATTCGCGTGAACCTTCACATTCTTGGGGCCGC‑AATTCCGCCCCAATTACAAAAACCCACGCCAAa > 1:288195/1‑147
TTGATAGAACGGGGCGGGGGCAGCGGGGGCAGGCAGAACCAGCACCAGCAAGGGGAACAAGGCCAGTAACGACAGCCGCTTCATTCGCGTGAACCTTCACATTCTTGGGGGCGCGTTGGGGGCCCCAATT‑GAAAAACCAAAACCAAaa > 3:291624/1‑146
TAGAACGGGGCGGGGGCAGCGGGGGCAGGCAGAACCAGCACCAGCAAGGGGAACAAGGCCAGTAACGACAGCCGCTTCATTCGCGTGAACCTTCACATTCTTGGGGCCGC‑GTTGCGGCCCCAATTACAAACACCAAAGCCAATACAAT > 7:67596/1‑148
GAACGGGGCGGGGGCAGCGGGGGCAGGCAGAACCAGCACCAGCAAGGGGAACAAGGCCAGTAACGACAGCCGCTTCATTCGCGTGAACCTTCACATTCTTGGGGCCGC‑TTTGCGGCCCCAATTACAAACACCAAAGCCAATACAATCAT < 3:58813/149‑1
AACGGGGCGGGGGCAGCGGGGGCAGGCAGAACCAGCACCAGCAAGGGGAACAAGGCCAGTAACGACAGCCGCTTCATTCGCGTGAACCTTCACATTCTTGGGGCCGC‑TTTGCGGCCCCAATTACAAACACCAAAGCCAATACAATCAT > 6:174499/1‑148
tCGGGGCGGGGGCAGCGGGGGCAGGCAGAACCAGCACCAGCAAGGGGAACAAGGCCAGTAACGACAGCCGCTTCATTCGCGTGAACCTTCACATTCTTGGGGCCGC‑TTTGCGGCCCCAATTACAAACACCAAAGCCAATACAATCATC < 4:41957/147‑1
GGGCGGGGGCAGCGGGGGCAGGCAGAACCAGCACCAGCAAGGGGAACAAGGCCAGTAACGACAGCCGCTTCATTCGCGTGAACCTTCACATTCTTGGGGCCGC‑TTTTGGGCCCCAATTACAAACACCAAAGCCAATACAATCATAAGGg > 8:6734/1‑148
GGGGGCAGCGGGGGCAGGCAGAACCAGCACCAGCAAGGGGAACAAGGCCAGTAACGACAGCCGCTTCATTCGCGTGAACCTTCACATTCTTGGGGCCGC‑TTTGCGGCCCCAATTACAAACACCAAAGCCAATACAATCATCAGGTCATC < 8:244834/149‑1
GGGGGCAGCGGGGGCAGGCAGAACCAGCACCAGCAAGGGGAACAAGGCCAGTAACGACAGCCGCTTCATTCGCGTGAACCTTCACATTCTTGGGGCCGC‑GTTGCGGCCCCAATTACAAACACCAAAGCCAATACAATCATAAGGTCATC > 4:90973/1‑149
CGGTGGCAGGCAGAACCAGCACCTGCAAGGGGAACAAGTCCAGTAACGACAGCCGCTTCATTCGCGTGAACCTTCACATTCTTGGGGCCGC‑TTTGCGGCCCCAATTACAAACACCAAAGCCAATACAATCATCAGGTCATCTGAATGA < 5:61380/148‑1
GCAGGCAGAACCAGCACCAGCAAGGGGAACAAGGCCAGTAACGACAGCCGCTTCATTCGCGTGAACCTTCACATTCTTGGGGCCGC‑TTTGCGGCCCCAATTACAAACACCAAAGCCAATACAATCATCAGGTCATCTGAATGATGGTCT > 5:116234/1‑149
AGGCAGAACCAGCACCAGCAAGGGGAACAAGGCCAGTAACGACAGCCGCTTCATTCGCGTGAACCTTCACATTCTTGGGGCCGC‑ATTTCGGCCCCCATTAAAAACACCAAAACCAATACAAACATAACGTGATCAGAAAGATGGTCTG > 8:200097/1‑148
CCAGCACCAGCAAGGGGAACAAGGCCAGTAACGACAGCCGCTTCATTCGCGTGAACCTTCACATTCTTGGGGCCGC‑TTTGCGGCCCCAATTACAAACACCAAAGCCAATACAATCATCAGGTCATCTGAATGATGGTCTGCATGATGGT > 1:1473/1‑149
CCAGCACCAGCAAGGGGAACAAGGCCAGTAACGACAGCCGCTTCATTCGCGTGAACCTTCACATTCTTGGGGCCGC‑GTTGCGGGCCCAAATACAAAAACCAAAGCCAATACAAACATCATGTGATAAGAAAGATGGTGTGCATGATGGT > 7:161396/1‑149
CAGCACCAGCAAGGGGAACAAGGCCAGTAACGACAGCCGCTTCATTCGCGTGAACCTTCACATTCTTGGGGGCGC‑GTTGGGGCCCCAATTACAAACACCAAAGCCCAAAAAATCATGAGGTGATGGGAATGATGGTGTGGATGGTGGTG > 6:42806/1‑149
CAGCACCAGCAAGGGGAACAAGGCCAGTAACGACAGCCGCTTCATTCGCGTGAACCTTCACATTCTTGGGGCCGG‑TTTGCGGCCCCCATTACAAACACCAAAGCCAATAAAATCATCAGGTCATGGGAATGTTGGTGTGGATGTTGGTG > 8:156400/1‑149
CAGCACCAGCAAGGGGAACAAGGCCAGTAACGACAGCCGCTTCATTCGCGTGAACCTTCACATTCTTGGGGCCGC‑GTTGCGGCCCCCATTACAAACACCAAAGCCAATAAAATCATCAGGTCATCTGAATGATGGTCTGCATGATGGTG > 5:249085/1‑149
GCAAGGGGAACAAGGCCAGTAACGACAGCCGCTTCATTCGCGTGAACCTTCACATTCTTGGGGCCGC‑GTTGCGGCCCCCATTACAAACACCAAAGCCAATACAATAATCAGGTCATATGAATGATGGTCTGGATGATGGGGCTTTCAGT > 7:71218/1‑149
CAAGGGGAACAAGGCCAGTAACGACAGCCGCTTCATTCGCGTGAACCTTCACATTCTTGGGGCCGC‑TTTGCGGCCCCAATTACAAACACCAAAGCCAATACAATCATCAGGTCATCTGAATGATGGTCTGCATGATGGTGCTTTCAGTG > 5:117288/1‑149
gAGGGGAACAAGGCCAGTAACGACAGCCGCTTCATTCGCGTGAACCTTCACATTCTTGGGGCCGC‑TTTGCGGCCCCAATTACAAACACCAAAGCCAATACAATCAACAGGTCATCTGAATGATGGTCTGCATGATGGTGCTTTGAGTGG > 5:331232/2‑149
AGGGGAACAAGGCCAGTAACGACAGCCGCTTCATTCGCGTGAACCTTCACATTCTTGGGGCCGC‑GTTGCGGCCCCAATTTCAAACACCAAAGCCAATACAAACATCAGGGGAACTGAATGATGGTGTTGAAGATGGGGGTTTCAGTGG > 6:93030/1‑148
GAACAAGGCCAGTAACGACAGCCGCTTCATTCGCGTGAACCTTCACATTCTTGGGGCCGC‑TTTGCGGCCCCAATTACAAACACCAAAGCCAATACAATCATCAGGTCATCTGAATGATGGTCTGCATGATGGTGCTTTCAGTGGAAATG < 5:174499/149‑1
ACAAGGCCAGTAACGACAGCCGCTTCATTCGCGTGAACCTTCACATTCTTGGGGCCGC‑TTTGCGGCCCCAATTACAAACACCAAAGCCAATACAATCATCAGGTCATCTGAATGATGGTCTGCATGATGGTGCTTTCAGTGGAAATGGT < 2:1473/149‑1
AGGCCAGTAACGACAGCCGCTTCATTCGCGTGAACCTTCACATTCTTGGGGCCGC‑TTTGCGGCCCCAATTACAAACACCAAAGCCAATACAATCATCAGGTCATCTGAATGATGGTCTGCATGATGGTGCTTTCAGTGGAAATGGTCTT < 1:107709/149‑1
AGGCCAGTAACGACAGCCGCTTCATTCGCGTGAACCTTCACATTCTTGGGGCCGC‑TTTGCGGCCCCAATTACAAACACCAAAGCCAATACAATCATCAGGTCATCTGAATGATGGTCTGCATGATGGTGCTTTCAGTGGAAATGGTCTT < 7:200097/149‑1
GCCAGTAACGACAGCCGCTTCATTCGCGTGAACCTTCACATTCTTGGGGCCGC‑TTTGCGGCCCCAATTACAAACTCCAAAGCCAATACAATCATCAGGTCATCTGAATGATGGTCTGCATGATGGTGCTTTCAGTGGAAATGGTCTTGG < 7:346447/149‑1
GCCAGTAACGACAGCCGCTTCATTCGCGTGAACCTTCACATTCTTGGGGCCGC‑TTTGCGGCCCCAATTACAAACACCAAAGCCAATACAATCATCAGGTGATCGGAATGATGGTCTGGATGATGGTGGTTTCAGTGGAAATGGTGTTGG > 4:130971/1‑149
AGTAACGACAGCCGCTTCATTCGCGTGAACCTTCACATTCTTGGGGCCGC‑TTTGCGGCCCCAATTACAAACACCAAAGCCAATACAATCATCAGGTCATCTGAATGATGGTGTGGATGATGGTGGGTTGAGTGGTATTGGTGTTGGGAT > 8:159024/1‑149
GTAACGACAGCCGCTTCATTCGCGTGAAGCTTCACATTCTTGGGGCCGC‑TTTGCGGCCCCAATTACAAACACCAAAGCCAATACAATCATCAGGTCATCTGAATGATGGTCTGCATGATGGTGCTTTCAGTGGAAATGGTCTTGGCATT < 5:341131/149‑1
ACGACAGCCGCTTCATTCGCGTGAACCTTCACATTCTTGGGGCCGC‑TTTGCGGCCCCAATTACAAACACCAAAGCCAATACAATCATCAGGTCATCTGAATGATGGTCTGCATGATGGTGCTTTCAGTGGAAATGGTCTTGGCATTGGC < 4:308163/149‑1
GCCGCTTCATTCGCGTGAACCTTCACATTCTTGGGGCCGC‑TTTGCGGCCCCAATTACAAACACCAAAGCCAATACAATCATCAGGTCATCTGAATGATGGTCTGCATGATGGTGCTTTCAGTGGAAATGGTCTTGGCATTGGCCTGGTA < 4:291624/149‑1
GCCGCTTCATTCGCGTGAACCTTCACATTCTTGGGGCCGC‑TTTGCGGCCCCAATTACAAACACCAAAGCCAATACAATCATCAGGTCATCTGAATGATGGTCTGCATGATGGTGCTTTCAGTGGAAATGGTCTTGGCATTGGCCTGGTA < 7:329567/149‑1
CCGCTTCATTCGCGTGAACCTTCACATTCTTGGGGCCGC‑TTTGCGGCCCCAATTACAAACACCAAAGCCAATACAATCATCAGGTCATCTGAATGATGGTCTGCATGATGGTGCTTTCAGTGGAAATGGTCTTGGCATTGGCCTGGTAG < 7:6734/149‑1
CACATTCTTGGGGCCGC‑TTTGCGGCCCCAATTACAAACACCAAAGCCAATACAATCATCAGGTCATCTGAATGATGGTCTGCATGATGGTGCTTTCAGTGGAAATGGTCTTGGCATTGGCCTGGTAGTTGCTCTGCGCCTTGATCAGG < 7:156400/148‑1
ACATTCTTGGGGCCGC‑TTTGCGGCCCCAATTACAAACACCAAAGCCAATACAATCATCAGGTCATCTGAATGATGGTCTGCATGATGGTGCTTTCAGTGGAAATGGTCTTGGCATTGGCCTGGTAGTTGCTCTGCGCCTTGATCAGGT < 3:190070/148‑1
ATTCTTGGGGCCGC‑TTTGCGGCCCCAATTACAAACACCAAAGCCAATACAATCATCAGGTCATCTGAATGATGGTCTGCATGATGGTGCTTTCAGTGGAAATGGTCTTGGCATTGGCCTGGTAGTTGCTCTGCGCCTTGATCAGGTTTA > 5:259255/1‑149
ATTCTTGGGGCCGC‑TTTGCGGCCCCAATTACAAACACCAAAGCCAATACAATCATCAGGTCATCTGAATGATGGTCTGCATGATGGTGCTTTCAGTGGAAATGGTCTTGGCATTGGCCTGGTAGTTGCTCTGCGCCTTGATCAGGTTTA > 2:103743/1‑149
aTTGGGGCCGC‑AAAGCGGCCCCAATTACAAACACCAAAACAAAAACAATCAACAGGTCATCTGAAAGATGGTATGCATGATGGTGCTTTCAGTGGAAATGGTCTTGGCATTGGCCTGCTAGTTGCTATGAGCCTTGAACAGGTTTACa > 4:138661/2‑147
CTTGGGGCCGC‑TTTGCGGCCCCAATTACAAAAACCAAAGCCAATACAATCATCAGGTCATCTGAATGATGGTCTGCATGATGGTGCTTTCAGTGGAAATGGTCTTGGCATTGGCCTGGTAGTTGCTCTGCGCCTTGATCAGGTTTACC < 5:3851/148‑1
GGGCCGC‑TTTGCGGGCCCAATTACAAACACCAAAGCCAATACAATCATCAGGTCATCTGAATGATGGTCTGGATGATGGTGCTTTCAGTGGAAATGGTCTTGGCATTGGCCTGGTAGTTGCTCTGCGCCTTGATCAGGTTTACCAGCTC > 2:1154/1‑149
GGGCCGC‑TTTGCGGCCCCAATTACAAACACCAAAGCCAATACAATCATCAGGTCATCTGAATGATGGTCTGCATGATGGTGCTTTCAGTGGAAATGGTCTTGGCATTGGCCTGGTAGTTGCTCTGCGCCTTGATCAGGTTTACCAGCTC < 8:161396/149‑1
GGCCGC‑TTTGCGGCCCCAATTACAAACACCAAAGCCAATACAATCATCAGGTCATCTGAATGATGGTCTGCATGATGGTGCTTTCAGTGGAAATGGTCTTGGCATTGGCCTGGTAGTTGCTCTGCGCCTTGATCAGGTTTACCAGCTCG < 2:290253/149‑1
|||
GGGCCGAACACAGGTAGCGGCCGGTGACCAGGCTTTGCCATTGATAGAACGGGGCGGGGGCAGCGGGGGCAGGCAGAACCAGCACCAGCAAGGGGAACAAGGCCAGTAACGACAGCCGCTTCATTCGCGTGAACCTTCACATTCTTGG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_002947_CJ‑RC/4982141‑4982288
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑CGC‑TTTGCGGCCCCAATTACAAACACCAAAGCCAATACAATCATCAGGTCATCTGAATGATGGTCTGCATGATGGTGCTTTCAGTGGAAATGGTCTTGGCATTGGCCTGGTAGTTGCTCTGCGCCTTGATCAGGTTTACCAGCTCG > NC_002947_CJ‑RC/4982289‑4982434
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
|---|
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |
GATK/CNVnator alignment
BRESEQ :: bam2aln output
GTGGGCCGAACACAGGTAGCGGCCGGTGACCAGGCTTTGCCATTGATAGAACGGGGCGGGGGCAGCGGGGGCAGGCAGAACCAGCACCAGCAAGGGGAACAAGGCCAGTAACGACAGCCGCTTCATTCGCGTGAACCTTCACATTCTT‑‑‑GG‑‑‑CGC‑TTTGCGGCCCCAATTACAAACACCAAAGCCAATACAATCATCAGGTCATCTGAATGATGGTCTGCATGATGGTGCTTTCAGTGGAAATGGTCTTGGCATTGGCCTGGTAGTTGCTCTGCGCCTTGATCAGGTTTACCAGCTCGCCGG > NC_002947_CJ‑RC/4982139‑4982438
|
gggggcgcaacacgggtcGCGGCCGGGGACCCGGCTTTCCCATTTTTAGACCGGGGGGGGGGCAGCGGGGGCAGGCAGAACCAGCACCAGCAAGGGGAACAAGGCCAGTAACGACAGCCGCTTCATTCGCGTGAACCTTCACATTCTT‑‑‑GG‑‑‑G < NB501016:282:H2V7GAFX2:2:11308:4815:19251/133‑1 (MQ=60)
GTGGGCCGAACACAGGTAGCGGCCGGTGACCAGGCTTTGCCATTGATAGAACGGGGCGGGGGCAGCGGGGGCAGGCAGAACCAGCACCAGCAAGGGGAACAAGGCCAGTAACGACAGCCGCTTCATTCGCGTGAACCTTCACATTCTT‑‑‑GG‑‑‑G > NB501016:282:H2V7GAFX2:4:21502:8776:8369/1‑151 (MQ=60)
TGGGCCGAACACAGGTAGCGGCCGGTGACCAGGCTTTGCCATTGATAGAACGGGGCGGAGGCAGCGGGGGCAGGCAGAACCAGCACCAGCAAGGGGACCAAGGCCAGTAACGACAGCCGCTTCATTCGCGTGAACCTTCACATTCTT‑‑‑GG‑‑‑GG > NB501016:282:H2V7GAFX2:1:21101:24199:10864/1‑151 (MQ=60)
ACAGGTAGGGGCCGGTGACCAGGATTTGCCATTGATAGACCGGGGCGGGGGCAGGGGGGGCAGGCAGAACCAGCACCAGCAAGGGGAACAAGGCCAGTAACGACAGCCGCTTCATTCGCGTGAACCTTCACATTCTT‑‑‑GGGGCCGC‑TTTGCG < NB501016:282:H2V7GAFX2:3:11402:21935:6952/151‑1 (MQ=60)
GTCGCGGCCGGTGACCAGGCTTTGCCATTGATAGACCGGGGCGGGGGCAGCGGGGGCAGGCAGAACCAGCACCAGCAAGGGGAACAAGGCCAGTAACGACAGCCGCTTCATTCGCGTGAACCTTCACATTCTT‑‑‑GGGGCCGC‑TTTGCGGCCC < NB501016:282:H2V7GAFX2:2:11106:12193:16454/151‑1 (MQ=60)
GTAGCGGCCGGTGACCAGGCTTTGCCATTGATAGAACGGGGCGGGGGCAGCGGGGGCAGGCAGAACCAGCACCAGCAAGGGGAACAAGGCCAGTAACGACAGCCGCTTCATTCGCGTGAACCTTCACATTCTT‑‑‑GGGGCCGC‑TTTGCGGCCC < NB501016:282:H2V7GAFX2:2:21308:19884:3862/151‑1 (MQ=60)
ggttgacctgggTTTGCCATTGATAGAACGGGGCGTGCGCAGCGGGCGCAGGCAGAACCACCACCAGCAAGGGGAACAAGGCCAGTAACGACAGCCGCTTCATTCGCGTGAACCTTCACATTCAT‑‑‑GGGGCCGC‑TTTGCGGCCCCAATTACA < NB501016:282:H2V7GAFX2:3:21601:18478:17907/139‑1 (MQ=60)
CGGTCACCCGGCTTTGCCATTGATAGACCGGGGCGGGGGCAGCGGGGGCAGGCAGAACCAGCACCAGCAAGGGGAACAAGGCCAGTAACGACAGCCGCTTCATTCGCGTGAACCTTCACATTCTT‑‑‑GGGGCCGC‑TTTGCGGCCCCAATTACA < NB501016:282:H2V7GAFX2:1:11308:15337:7943/151‑1 (MQ=60)
GGTGACCAGGCTTTGCCATTCATAGACCGGGGCGGGGGCAGCGGGGGTAGGCAGAACCAGCACCAGCAAGGGGAACAAGGCCAGTAACGACAGCCGCTTCATTCGCGTGAACCTTCACATTCTT‑‑‑GGGGCCGC‑TTTGCGGCCCCAATTACAA < NB501016:282:H2V7GAFX2:2:21108:6671:6251/151‑1 (MQ=60)
GACCAGGCTTTGCCATTGATAGAACGGGGCGGGGGCAGCGGGGGCAGGCAGAACCAGCACCAGCAAGGGGAACAAGGCCAGTAACGACAGCCGCTTCATTCGCGTGAACCTTCACATTCTT‑‑‑GGGGCCGC‑TTTGCGGCCCCAATTACAAAC < NB501016:282:H2V7GAFX2:3:21402:11373:8811/150‑1 (MQ=60)
CCAGGCTTTGCCATTGATAGAACGGGGCGGGGGCAGCGGGGGCAGGCAGAACCAGCACCAGCAAGGGGAACAAGGCCAGTAACGACAGCCGCTTCATTCGCGTGAACCTTCACATTCTT‑‑‑GGgggcgcgtttcggggcccctatcaaacacc > NB501016:282:H2V7GAFX2:1:21311:15274:5543/1‑121 (MQ=60)
CCAGGCTTTGCCATTGATAGAACGGGGCGGGGGCAGCGGGGGCAGGCAGAACCAGCACCAGCAAGGGGAACAAGGCCAGTAACGACAGCCGCTTCATTCGCGTGAACCTTCACATTCTT‑‑‑GGGGCCGC‑ATTGCGGCCCCAATTACAAACACC > NB501016:282:H2V7GAFX2:4:21505:18361:7879/1‑151 (MQ=60)
CATTGATAGAACGGGGCGGGGGCAGCGGGGGCAGGCAGAACCAGCACCAGCAAGGGGAACAAGGCCAGTAACGACAGCCGCTTCATTCGCGTGAACCTTCACATTCTT‑‑‑GGggccgcaattccgccccaattacaaaaacccacgccaaaa > NB501016:282:H2V7GAFX2:1:21212:25767:17036/1‑110 (MQ=60)
ATTGATAGAACGGGGCGGGGGCAGCGGGGGCAGGCAGAACCAGCACCAGCAAGGGGAACAAGGCCAGTAACGACAGCCGCTTCATTCGCGTGAACCTTCACATTCTT‑‑‑GGgggcgcgttgggggccccaattgaaaaaccaaaaccaaaaa > NB501016:282:H2V7GAFX2:2:21304:17270:16999/1‑109 (MQ=60)
ATAGAACGGGGCGGGGGCAGCGGGGGCAGGCAGAACCAGCACCAGCAAGGGGAACAAGGCCAGTAACGACAGCCGCTTCATTCGCGTGAACCTTCACATTCTT‑‑‑GGGGCCGC‑GTTGCGGCCCCAATTACAAACACCAAAGCCAATACAATC > NB501016:282:H2V7GAFX2:4:11502:4269:6536/1‑150 (MQ=60)
AGAACGGGGCGGGGGCAGCGGGGGCAGGCAGAACCAGCACCAGCAAGGGGAACAAGGCCAGTAACGACAGCCGCTTCATTCGCGTGAACCTTCACATTCTT‑‑‑GGGGCCGC‑TTTGCGGCCCCAATTACAAACACCAAAGCCAATACAATCATC < NB501016:282:H2V7GAFX2:2:11201:18514:12166/151‑1 (MQ=60)
GCGGTGGCAGGCAGAACCAGCACCTGCAAGGGGAACAAGTCCAGTAACGACAGCCGCTTCATTCGCGTGAACCTTCACATTCTT‑‑‑GGGGCCGC‑TTTGCGGCCCCAATTACAAACACCAAAGCCAATACAATCATCAGGTCATCTGAATGAT < NB501016:282:H2V7GAFX2:3:11502:13042:3967/150‑1 (MQ=60)
GGCAGGCAGAACCAGCACCAGCAAGGGGAACAAGGCCAGTAACGACAGCCGCTTCATTCGCGTGAACCTTCACATTCTT‑‑‑GGGGCCGC‑TTTGCGGCCCCAATTACAAACACCAAAGCCAATACAATCATCAGGTCATCTGAATGATGGTCTG > NB501016:282:H2V7GAFX2:3:11601:9449:7381/1‑151 (MQ=60)
CAGGCAGAACCAGCACCAGCAAGGGGAACAAGGCCAGTAACGACAGCCGCTTCATTCGCGTGAACCTTCACATTCTT‑‑‑GGgggcgcgtttgggcccccaataaaaacaccaaacccaataaaataataaggtgatctggattttggtctgg > NB501016:282:H2V7GAFX2:2:21206:11491:10868/1‑79 (MQ=60)
CAGAACCAGCACCAGCAAGGGGAACAAGGCCAGTAACGACAGCCGCTTCATTCGCGTGAACCTTCACATTCTTGGGGG‑‑‑CGCGTTTGGGGCCCC‑ATTACAAACACCCAAGCCAATtcaaacataacgtgatctgtattatggtggtgatgtt > NB501016:282:H2V7GAFX2:2:11110:24605:7893/1‑114 (MQ=60)
ACCAGCACCAGCAAGGGGAACAAGGCCAGTAACGACAGCCGCTTCATTCGCGTGAACCTTCACATTCTT‑‑‑GGGGCCGC‑TTTGCGGCCCCAAATAAAAACACCAAAGCCAATACAAAAATAAGGTCATCTGAATGATTGTGTGCATGATGGTG > NB501016:282:H2V7GAFX2:3:11603:20842:5050/1‑151 (MQ=60)
ACCAGCACCAGCAAGGGGAACAAGGCCAGTAACGACAGCCGCTTCATTCGCGTGAACCTTCACATTCTT‑‑‑GGGGCCGC‑GTTGCGGGCCCAAATACAAAAACCAAAGCCAATACAAACATCATGTGATAAGAAAGATGGTGTGCATGATGGTG > NB501016:282:H2V7GAFX2:4:11609:21856:14130/1‑151 (MQ=60)
ACCAGCACCAGCAAGGGGAACAAGGCCAGTAACGACAGCCGCTTCATTCGCGTGAACCTTCACATTCTT‑‑‑GGGGCCGC‑GTTGCGGCCCCAATTACAAACACCAAAGCCAATAAAATCATCAGGTCATCTGAATGATGGTCTGCATGATGGTG > NB501016:282:H2V7GAFX2:1:11101:16995:6897/1‑151 (MQ=60)
CCAGCACCAGCAAGGGGAACAAGGCCAGTAACGACAGCCGCTTCATTCGCGTGAACCTTCACATTCTT‑‑‑GGGGCCGC‑GTTGCGGCCCCCATTACAAACACCAAAGCCAATAAAATCATAAGGTCATATGAATGATGGTCTGCATGATGGTGG > NB501016:282:H2V7GAFX2:3:21505:15019:11553/1‑151 (MQ=60)
AGCACCAGCAAGGGGAACAAGGCCAGTAACGACAGCCGCTTCATTCGCGTGAACCTTCACATTCTTGGGGG‑‑‑CGC‑ATTGCGGCCCCAAataaaaaaaccaaaaccaaaaaaaaaaaaaggtcaaatgaataattggattaaagattgtggtt > NB501016:282:H2V7GAFX2:1:21301:15204:6659/1‑87 (MQ=60)
GCACCAGCAAGGGGAACAAGGCCAGTAACGACAGCCGCTTCATTCGCGTGAACCTTCACATTCTT‑‑‑GGggcagcggtgccggcccaaataaaaacaccaaaaccaaaaaaaaaataaagtcatatgaataaaggagagcatgatggtgggtt > NB501016:282:H2V7GAFX2:1:21106:15268:7676/1‑67 (MQ=60)
AGCAAGGGGAACAAGGCCAGTAACGACAGCCGCTTCATTCGCGTGAACCTTCACATTCTT‑‑‑GGGGCCGC‑GTTGCGGCCCCCATTACAAACACCAAAGCCAATACAATAATCAGGTCATATGAATGATGGTCTGGATGATGGGGCTTTCAGTG > NB501016:282:H2V7GAFX2:4:11503:3802:1768/1‑151 (MQ=60)
GCAAGGGGAACAAGGCCAGTAACGACAGCCGCTTCATTCGCGTGAACCTTCACATTCTT‑‑‑GGGGCCGC‑TTTGCGGCCCCAATTACAAACACCAAAGCCAATACAATCATCAGGTCATCAGAATGATGGTCTGCATGATGGTGGTTTCAGTGG > NB501016:282:H2V7GAFX2:3:11601:12197:11421/1‑151 (MQ=60)
CGAGGGGAACAAGGCCAGTAACGACAGCCGCTTCATTCGCGTGAACCTTCACATTCTT‑‑‑GGGGCCGC‑TTTGCGGCCCCAATTACAAACACCAAAGCCAATACAATCAACAGGTCATCTGAATGATGGTCTGCATGATGGTGCTTTGAGTGGT > NB501016:282:H2V7GAFX2:3:21610:18147:10271/1‑151 (MQ=60)
CAAGGGGAACAAGGCCAGTAACGACAGCCGCTTCATTCGCGTGAACCTTCACATTCTT‑‑‑GGgggcgggtttggggccccattaaaaaaaacaaaaacaaaaaaaaaaaaaagtgaaaataattattgtggggatttatgttggttaattggg > NB501016:282:H2V7GAFX2:2:21302:5974:19338/1‑60 (MQ=60)
GGAACAAGGCCAGTAACGACAGCCGCTTCATTCGCGTGAACCTTCACATTCTT‑‑‑GGGGCCGC‑TTTGCGGCCCCAATTACAAACACCAAAGCCAATACAATCATCAGGTCATCTGAATGATGGTCTGCATGATGGTGCTTTCAGTGGAAATGG < NB501016:282:H2V7GAFX2:3:11612:20155:16740/151‑1 (MQ=60)
AAGGCCAGTAACGACAGCCGCTTCATTCGCGTGAACCTTCACATTCTT‑‑‑GGGGCCGC‑TTTGCGGCCCCAATTACAAACACCAAAGCCAATACAATCATCAGGTCATCTGAATGATGGTCTGCATGATGGTGCTTTCAGTGGAAATGGTCTTG < NB501016:282:H2V7GAFX2:4:21405:3619:12590/151‑1 (MQ=60)
AAGGCCAGTAACGACAGCCGCTTCATTCGCGTGAACCTTCACATTCTT‑‑‑GGGGCCGC‑TTTGCGGCCCCAATTACAAACACCAAAGCCAATACAATCATCAGGTCATCTGAATGATGGTCTGCATGATGGTGCTTTCAGTGGAAATGGTCTTG < NB501016:282:H2V7GAFX2:1:11210:20426:10797/151‑1 (MQ=60)
GGCCAGTAACGACAGCCGCTTCATTCGCGTGAACCTTCACATTCTT‑‑‑GGGGCCGC‑TTTGCGGCCCCAATTACAAACTCCAAAGCCAATACAATCATCAGGTCATCTGAATGATGGTCTGCATGATGGTGCTTTCAGTGGAAATGGTCTTGGC < NB501016:282:H2V7GAFX2:4:21611:7651:12063/151‑1 (MQ=60)
AGTAACGACAGCCGCTTCATTCGCGTGAAGCTTCACATTCTT‑‑‑GGGGCCGC‑TTTGCGGCCCCAATTACAAACACCAAAGCCAATACAATCATCAGGTCATCTGAATGATGGTCTGCATGATGGTGCTTTCAGTGGAAATGGTCTTGGCATTG < NB501016:282:H2V7GAFX2:3:21612:20562:15118/151‑1 (MQ=60)
AGCCGCTTCATTCGCGTGAACCTTCACATTCTT‑‑‑GGGGCCGC‑TTTGCGGCCCCAATTACAAACACCAAAGCCAATACAATCATCAGGTCATCTGAATGATGGTCTGCATGATGGTGCTTTCAGTGGAAATGGTCTTGGCATTGGCCTGGTAG < NB501016:282:H2V7GAFX2:4:21607:5567:19822/151‑1 (MQ=60)
GCCGCTTCATTCGCGTGAACCTTCACATTCTT‑‑‑GGGGCCGC‑TTTGCGGCCCCAATTACAAACACCAAAGCCAATACAATCATCAGGTCATCTGAATGATGGTCTGCATGATGGTGCTTTCAGTGGAAATGGTCTTGGCATTGGCCTGGTAGT < NB501016:282:H2V7GAFX2:4:11402:18391:7233/151‑1 (MQ=60)
CTTCATTCGCGTGAACCTTCACATTCTT‑‑‑GGggccgggttggggcccccaataaaaaaaccaaaaccaaaaaaaaaataaattaaaattaaatattgggaggatgtttttgcttttagtggtaaatgtatttggaatttcccggtagttgtt > NB501016:282:H2V7GAFX2:3:11406:23884:13545/1‑30 (MQ=60)
TCACATTCTT‑‑‑GGGGCCGC‑TTTGCGGCCCCAATTACAAACACCAAAGCCAATACAATCATCAGGTCATCTGAATGATGGTCTGCATGATGGTGCTTTCAGTGGAAATGGTCTTGGCATTGGCCTGGTAGTTGCTCTGCGCCTTGATCAGGT < NB501016:282:H2V7GAFX2:4:11608:15996:13275/150‑1 (MQ=60)
CACATTCTT‑‑‑GGGGCCGC‑TTTGCGGCCCCAATTACAAACACCAAAGCCAATACAATCATCAGGTCATCTGAATGATGGTCTGCATGATGGTGCTTTCAGTGGAAATGGTCTTGGCATTGGCCTGGTAGTTGCTCTGCGCCTTGATCAGGTT < NB501016:282:H2V7GAFX2:2:21104:24691:10729/150‑1 (MQ=60)
CATTCTT‑‑‑GGGGCCGC‑TTTGCGGCCCCAATTACAAACACCAAAGCCAATACAATCATCAGGTCATCTGAATGATGGTCTGCATGATGGTGCTTTCAGTGGAAATGGTCTTGGCATTGGCCTGGTAGTTGCTCTGCGCCTTGATCAGGTTTAC > NB501016:282:H2V7GAFX2:3:21507:18179:15071/1‑151 (MQ=60)
TCTT‑‑‑GGGGCCGC‑TTTGCGGCCCCAATTACAAAAACCAAAGCCAATACAATCATCAGGTCATCTGAATGATGGTCTGCATGATGGTGCTTTCAGTGGAAATGGTCTTGGCATTGGCCTGGTAGTTGCTCTGCGCCTTGATCAGGTTTACCA < NB501016:282:H2V7GAFX2:3:11401:23268:16713/150‑1 (MQ=60)
C‑‑‑CGC‑TTTGCGGCCCCAATTACAAACACCAAAGCCAATACAATCATCAGGTCATCTGAATGATGGTCTGCATGATGGTGCTTTCAGTGGAAATGGTCTTGGCATTGGCCTGGTAGTTGCTCTGCGCCTTGATCAGGTTTACCAGCTCGCCGG < NB501016:282:H2V7GAFX2:2:21304:12507:11042/151‑1 (MQ=60)
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GTGGGCCGAACACAGGTAGCGGCCGGTGACCAGGCTTTGCCATTGATAGAACGGGGCGGGGGCAGCGGGGGCAGGCAGAACCAGCACCAGCAAGGGGAACAAGGCCAGTAACGACAGCCGCTTCATTCGCGTGAACCTTCACATTCTT‑‑‑GG‑‑‑CGC‑TTTGCGGCCCCAATTACAAACACCAAAGCCAATACAATCATCAGGTCATCTGAATGATGGTCTGCATGATGGTGCTTTCAGTGGAAATGGTCTTGGCATTGGCCTGGTAGTTGCTCTGCGCCTTGATCAGGTTTACCAGCTCGCCGG > NC_002947_CJ‑RC/4982139‑4982438
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| Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 0 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
