Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A4 F31 I1 R1
|
56 |
85.7 |
3650428 |
98.3% |
3588370 |
146.6 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| RA |
NC_002947_CJ‑RC |
4,958,170 |
(C)5→4 |
coding (288/1374 nt) |
fliI ← |
flagellum‑specific ATP synthase |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NC_002947_CJ‑RC | 4,958,166 | 0 | C | . | 97.7%
| 384.9
/ 2.7
| 87 | coding (292/1374 nt) | fliI | flagellum‑specific ATP synthase |
| Reads supporting (aligned to +/- strand): ref base C (1/1); new base . (42/43); total (43/44) |
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 |
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.37e-01 |
TTGATCACCGGGCCGTCCATCGGCACCCAGTCCTCGGCCTTCATCCCGCCCTTGCCATCCAGCGCACGGCCGGCGCCGTCGAGCACCCGGCCCAGCATGCTCATGCCCATGGGCAGACGGCCGCCGTCATCCAGCGGCACGACCCGGGCCCCCGGCGCGATGCCGACGATACTGCCCACCGGCATCAGAAACACCTTGGGCCCGGCAAAGCCCATGACTTCGGCCTCGACCTGCACCGGGTGATAACTGTCATCGTTGATCACCAGGCAGCGGCTGCCCACTGCTGCGCGCA > NC_002947_CJ‑RC/4958018‑4958309
|
ttGATCACCGGGCCGTCCATCGGCACCCAGTCCTCGGCCTTCAACCCGCCCTTGCCATCCAGCGCACGGCCGGCGCCGTCGAGCACCCGGCCCAGCATGCTCATGCCCATGGGCAGACGGCCGCCGTCATCCAGCGGCACGACCCGGGc < 7:319532/149‑1 (MQ=255)
tGATCACCGGGCCGTCCATCGGCACCCAGTCCTCGGCCTTCATCCCGCCCTTGCCATCCAGCGCACGGCCGGCGCCGTCGAGCACCCGGCCCAGCATGCTCATGCCCATGGGCAGACGGCCGCCGTCATCCAGCGGCACGACCCGGGcc > 1:132229/1‑149 (MQ=255)
tCACCGGGCCGTCCATCGGCACCCAGTCCTCGGCCTTCATCCCGCCCTTGCCATCCAGCGCACGGCCGGCGCCGTCGAGCACCCGGCCCAGCATGCTCATGCCCATGGGCAGACGGCCGCCGTCATCCAGCGGCACGACCCGGGccccg > 5:411339/1‑148 (MQ=255)
tCACCGGGCCGTCCATCGGCACCCAGTCCTCGGCCTTCATCCCGCCCTTGCCATCCAGCGCACGGCCGGCGCCGTCGAGCACCCGGCCCAGCATGCTCATGCCCATGGGCAGACGGCCGCCGTCATCCAGCGGCACGACCCGGGccccg > 7:185562/1‑148 (MQ=255)
aCCGGGCCGTCCATAGGCACCCAGTCCTCGGCCTTCATCCCGCCCTTGCCATCAAGCGCACGGCCGGCGCCGTCGAGCACCCGGCCAAGTATGCTCATGCCCATGGGCAGACGGCCGCCGTCAACCAGCGGCACGACCCGCGccccggc > 8:315077/1‑146 (MQ=255)
ccGGGCCGTCCATCGGCACCCAGTCCTCGGCCTTCATCCCGCCCTTGCCATCCAGCGCACGGCCGGCGCCGTCGAGCACCCGGCCCAGCATGCTCATGCCCATGGGCAGACGGCCGCCGTCATCCAGCGGCACGACCCGGGCCCCCGgc > 3:385147/1‑149 (MQ=255)
ccGTCCATCGGCACCCAGTCCTCGGCCTTCATCCCGCCCTTGCCATCCAGCGCACGGCCGGCGCCGTCGAGCACCCGGCCCAGCATGCTCATGCCCATGGGCAGACGGCCGCCGTCATCCAGCGGCACGACCCGGG‑CCCCGGCGCGATg > 6:398134/1‑149 (MQ=255)
gTCCATCGGCACCCAGTCCTCGGCCTTCATCCCGCCCTTGCCATCCCGCGCACGGCCGGCGCCGTCGAGCACCCGGCCCAGCAGGCTCATGCCCATGGGCAGACGGCCGCCGTCAGCCAGCGGCACGACCCGGG‑CCCCGGCGCGATGcc > 2:429159/1‑149 (MQ=255)
gTCCATCGGCACCCAGTCCTCGGCCTTCATCCCGCCCTTGCCATCCAGCGCACGGCCGGCGCCGTCGAGCACCCGGCCCAGCATGCTCATGCCCATGGGCAGACGGCCGCCGTCATCCAGCGGCACGACCCGGG‑CCCCGGCGCGATGcc > 3:187358/1‑149 (MQ=255)
aTCGGCACCCAGTCCTCGGCCTTCATCCCGCCCTTGCCATCAAGCGCACGGCCGGCGCCGTCGAGCACCCGGCCCAGCATGCTCATGCCCATGGGCAGACGGCCCCCGTCATCCAGCGGCACGACCCGGG‑CCCCGGCGCGATGCcgac > 7:218602/1‑148 (MQ=255)
tCGGCACCCAGTCCTCGGCCTTCATCCCGCCCTTGCCATCCAGCGCACCGCCGGCGCCGTCGAGCACCCGGCCCAGCATGCTCATGCCCATGGGCAGACGGCCGCCGTCATCCAGCGGCCCGCCCCGGG‑CCCCGGCGCGATGCcgacg > 8:283914/1‑148 (MQ=255)
tCGCCACCCAGTCCTCGGCCTTCATCCCGCCGTTCCCATCCAGCGCAGGGCGGGCGCCGTCGAGCACCCGGCCCAGCATGCTCATGCCCATGGGCTGACGGCCGCCGTCATCCCGCGGCACGACCCGGG‑CCCCGGCGCGATGCcgacga < 2:230124/149‑1 (MQ=255)
cccAGTCCTCGGCCTTCATCCCGCCCTTGCCATCCAGCGCACGGCCGGCGCCGTCGAGCACCCGGCCCAGCATGCTCATGCCCATGGGCAGACGGCCGCCGTCATCCAGCGGCACGACCCGGG‑CCCCGGCGCGATGCCGACGATACTGc < 6:181085/149‑1 (MQ=255)
ccAGTCCTCGGCCTTCATCCCGCCCTTGCCATCCAGCGCACGGCCGGCGCCGTCGAGCACCCGGCCCAGCATGCTCATGCCCATGGGCAGACGGCCGCCGTCATCCAGCGGCACGACCCGGG‑CCCCGGCGCGATGCCGACGATACTGcc < 8:459210/149‑1 (MQ=255)
cTCGGCCTTCATCCCGCCCTTGCCATCCAGCGCACGGCCGGCGCCGTCGAGCACCCGGCCCAGCATGCTCATGCCCATGGGCAGACGGCCGCCGTCATCCAGCGGCACGACCCGGG‑CCCCGGCGCGATGCCGACGATACTGCCCACCgg < 7:146313/149‑1 (MQ=255)
tCGGCCTTCATCCCGCCCTTGCCATCCAGCGCACGGCCGGCGCCGTCGAGCACCCGGCCCAGCATGCTCATGCCCATGGGCAGACGGCCGCCGTCATCCAGCGGCACGACCCGGG‑CCCCGGCGCGATGCCGACGATACTGCCCACCgg > 6:28751/1‑148 (MQ=255)
ggCCTTCATCCCGCCCTTGCCATCCAGCGCACGGCCGGCGCCGTCGAGCACCCGGCCCAGCATGCTCATGCCCATGGGCTGACGGCCGCCGTCATCCAGCGGCACGACCCGGG‑CCCCGGCGCGATGCCGACGATACTGCCCACCGGCAt > 5:368224/1‑149 (MQ=255)
ggCCTTCATCCCGCCCTTGCCATCCAGCGCACGGCCGGCGCCGTCGAGCACCCGGCCCAGCATGCTCATGCCCATGGGCAGACGGCCGCCGTCATCCAGCGGCACGACCCGGG‑CCCCGGCGCGATGCCGACGATa < 7:359278/135‑1 (MQ=255)
ggCCTTCATCCCGCCCTTGCCATCCAGCGCACGGCCGGCGCCGTCGAGCACCCGGCCCAGCATGCTCATGCCCATGGGCAGACGGCCGCCGTCATCCAGCGGCACGACCCGGG‑CCCCGGCGCGATGCCGACGATa > 8:359278/1‑135 (MQ=255)
ggCCTTCATCCCGCCCTTGCCATCCAGCGCACGGCCGGCGCCGTCGAGCACCCGGCCCAGCATGCTCATGCCCATGGGCAGACGGCCGCCGTCATCCAGCGGCACGACCCGGG‑CCCCGGCGCGATGCCGACGATACTGCCCACCGGCAt < 2:132229/149‑1 (MQ=255)
gCCTTCATCCCGCCCTTGCCATCCAGCGCACGGCCGGCGCCGTCGAGCACCCGGCCCAGCATGCTCATGCCCATGGGCAGACGGCCGCCGTCATCCAGCGGCACGACCCGGG‑CCCCGGCGCGATGCCGACGATACTGCCCACCGGCAt > 1:291364/1‑148 (MQ=255)
cTTCATCCCGCCCTTGCCATCCAGCGCACGGCCGGCGCCGTCGAGCACCCGGCCCAGCATGCTCATGCCCATGGGCAGACGGCCGCCGTCATCCAGCGGCACGACCCGGG‑CCCCGGCGCGATGCCGACGATACTGCCCACCGGCATCAg < 1:330436/149‑1 (MQ=255)
ttCATCCCGCCCTTGCCATCCAGCGCACGGCCGGCGCCGTCGAGCACCCGGCCCAGCATGCTCATGCCCATGGGCAGCCGGCCGCCGGCATCCAGCGGCCCGACCCGGG‑CCCCGGCGCGATGCCGACGATACTGCCCACCGGCATCAg > 2:347525/1‑148 (MQ=255)
aTCCCGCCCTTGCCATCCAGCGCACGGCCGGCGCCGTCGAGCACCCGGCCCAGCATGCTCATGCCCATGGGCAGACGGCCGCCGTCATCCAGCGGCACGACCCGGG‑CCCCGGCGCGATGCCGACGATACTGCCCACCGGCATCAGaaa < 1:75066/148‑1 (MQ=255)
gCCCTTGCCATCCAGCGCACGGCCGGCGCCGTCGAGCACCCGGCCCAGCATGCTCATGCCCATGGGCAGACGGCCGCCGTCATCCAGCGGCACGACCCGGG‑CCCCGGCGCGATGCCGACGATACTGCCCACCGGCATCAGAAACACCtt < 2:246196/149‑1 (MQ=255)
gCCATTGCCATCCAGCGCACGGCCGGCGCCGTCGAGCACCCGGCCCAGAATGCTCATGCCCATGGGCAGACGGCCGCCGTCATCCAGCGGCACGACCCGGG‑CCCCGGCGCGATGCCGACGATACTGCCCACCGGCATCAGAAACACCtt < 3:62907/149‑1 (MQ=255)
ccTTGCCATCCAGCGCATGGCCGGCGCCGTCGAGCACCCGGCCCAGCATGCTCATGCCCATGGGCAGACGGCCGCCGTCATCCAGCGGCACGACCCGCG‑CCCCGGCGCGATGCCGACGATACTGCCCACCGGCATCAGAAACCCCTTgg > 8:60320/1‑149 (MQ=255)
cATCCAGCGCACGGCCGGCGCCGTCGAGCACCCGGCCCAGCATGCTCATGCCCATGGGCAGACGGCCGCCGTCATCCAGCGGCACGACCCGGG‑CCCCGGCGCGATGCCGACGATACTGCCCACCGGCATCAGAAACACCTTGGGCCCgg > 1:41845/1‑149 (MQ=255)
aTCCAGCGCACGGCCGGCGCCGTCGAGCATCCGGCCCAGCATGCTCATGCCCATGGGCAGACGGCCGCCGTCATCCAGCGGCACGACCCGGG‑CCCCGGCGCGATGCCGACGATACTGCCCACCGGCATCAGAAACACCTTGGGCCCGGc < 4:275624/149‑1 (MQ=255)
aTCCAGCGCACGGCCGGCGCCGTCGAGCACCCGGCCCAGCATGCTCATGCCCATGGGCAGACGGCCGCCGTCATCCAGCGGCACGACCCGGG‑CCCCGGCGCGATGCCGACGATACTGCCCACCGGCATCAGAAACACCTTGGGCCCgg > 4:266133/1‑148 (MQ=255)
aTCCAGCGCACGGCCGGCGCCGTCGAGCACCCGGCCCAGCATGCTCATGCCCATGGGCAGACGGCCGCCGTCATCCAGCGGCACGACCCGGG‑CCCCGGCGCGATGCCGACGATACTGCCCACCGGCATCAGAAACACCTTGGGCCCGGc < 4:351885/149‑1 (MQ=255)
tCCAGCGCACGGCCGGCGCCGTCGAGCACCCGGCCCAGCATGCTCATGCCCATGGGCAGACGGCCGCCGTCATCCAGCGGCACGACCCGGG‑CCCCGGCGCGATGCCGACGATACTGCCCACCGGCATCAGAAACACCTTGGGCCCGGCa < 4:185546/149‑1 (MQ=255)
gcgcACGGCCGGCGCCGTCGAGCACCCGGCCCAGCATGCTCATGCCCATGGGCAGACGGCCGCCGTCATCCAGCGGCACGACCCGGG‑CCCCGGCGCGTTGCCGGGGATACTGCCCACCGGCATCTGAAACACCTTGGGCCCGGCAAAGc > 2:259535/1‑149 (MQ=255)
cgcACGGCCGGCGCCGTCGAGCACTCGGCCCAGCATGCTCATGCCCATGGGCAGACGGCCGCCGTCATCCAGCGGCACGACCCGGG‑CCCCGGCGCGATGCCGACGATACTGCCCACCGGCATCAGAAACACCTTGGGCCCGGCAAAGcc < 5:406628/149‑1 (MQ=255)
cACGGCCGGCGCCGTCGAGCACCCGGCCCAGCATGCTCATGCCCATGGGCAGACGGCCGCCGTCATCCAGCGGCACGACCCGGG‑CCCCGGCGCGATGCCGACGATACTGCCCACCGGCATCAGAAACACCTTGGGCCCGGCAAAGCCCa > 3:420239/1‑149 (MQ=255)
cACGGCCGGCGCCGTCGAGCACCCGGCCCAGCATGCGCATGCCCATGGGCAGACGGCCGCCGTCATCCAGCGGCACGACCCGGG‑CCCCGGCGCGATGCCGACGATACTGCCCACCGGCATCAGAAACACCTTGGGCCCGGCAAAGCCCa < 1:211794/149‑1 (MQ=255)
ggccggcGCCGGCGAGCACCCGGCCCAGCATGCTCATGCCCATGGGCAGACGGCCGCCGTCATCCAGCGGCACGACCCGGG‑CCCCGGCGCGATGCCGACGATACTGCCCACCGGCATCAGAAACACCTTGGGCCCGGCAAAGCCCATGa < 1:208973/149‑1 (MQ=255)
cggcgccggcgcGCACCCGGCCCAGCATGCTCATGCCCAGGGGCAGACGGCCGCCGTCCTCGCGCGGCAGCACCCGGG‑CCCCGGCGCGATGCCGACGATACTGCCCACCGGCATCAGATCCACCTTGGGCCCGGCAAAGCCCATGACtt < 8:218602/149‑1 (MQ=255)
cGTCGAGCACCCGGCCCAGCATGCTCATGCCCATGGGCAGACGGCCGCCGTCATCCAGCGGCACGACCCGGG‑CCCCGGCGCGATGCCGACGATACTGCCCACCGGCATCAGAAACACCTTGGGCCCGGCAAAGCCCATGACTTCGGCCt > 8:366224/1‑149 (MQ=255)
cGTCGAGCACCCGGCCCAGCATGCTCATGCCCATGGGCAGACGGCCGCCGTCATCCAGCGGCACGACCCGGG‑CCCCGGCGCGATGCCGACGATACTGCCCACCGGCATCAGAAACACCTTGGGCCCGGCAAAGCCCATGACTTCGGCCt > 4:304172/1‑149 (MQ=255)
cGTCGAGCACCCGGCCCAGCATGCTCATGCCCATGGGCAGACGGCCGCCGTCATCCAGCGGCACGACCCGGG‑CCCCGGCGCGATGCCGACGATACTGCCCACCGGCATCAGAAACACCTTGGGCCCGGCAAAGCCCATGACTTCGGCCt < 1:49443/149‑1 (MQ=255)
cGTCGAGCACCCGGCCCAGCATGCTCATGCCCATGGGCAGACGGCCGCCGTCATCCAGCGGCACGACCCGGG‑CCCCGGCGCGATGCCGACGATACTGCCCACCGGCATCAGAAACACCTTGGGCCCGGCAAAGCCCATGACTTCGGCCt < 3:391507/149‑1 (MQ=255)
cGTCGAGCACCCGGCCCAGCATGCTCATGCCCATGGGCAGACGGCCGCCGTCATCCAGCGGCACGACCCGGG‑CCCCGGCGCGATGCCGACGATACTGCCCACCGGCATCAGAAACACCTTGGGCCCGGCAAAGCCCATGACTTCGGCCt > 3:424453/1‑149 (MQ=255)
gAGCACCCGGCCCAGCATGCTCATGCCCATGGGTAGACGGCCGCCGTCATCCAGCGGCACGACCCGGG‑CCCCGGCGCGATGCCGACGATACTGCCCACCGGCATCAGAAACACCTTGGGCCCGGCAAAGCCCATGACTTCGGCCTCGAc > 3:61087/1‑149 (MQ=255)
aGCACCCGGCCCAGCATGCTCATGCCCATGGGCAGACGGCCGCCGTCATCCAGCGGCACGACCCGGG‑CCCCGGCGCGATGCCGACGATACTGCCCACCGGCATCAGAAACACCTTGGGCCCGGCAAAGCCCATGACTTCGGCCTCGAcc < 2:382068/149‑1 (MQ=255)
aGCACCCGGCCCAGCATGCTCATGCCCATGGGCAGACGGCCGCCGTCATCCAGCGGCACGACCCGGG‑CCCCGGCGCGATGCCGACGATACTGCCCACCGGCATCAGAAACACCTTGGGCCCGGCAAAGCCCATGACTTCGGCCTCGAcc < 1:268819/149‑1 (MQ=255)
ccGGCCCAGCATGCTCATGCCCATGGGCAGACGGCCGCCGTCATCCAGCGGCACGACCCGGG‑CCCCGGCGCGATGCCGACGATACTGCCCACCGGCATCAGAAACACCTTGGGCCCGGCAAAGCCCATGACTTCGGCCTCGACCTGCAc > 2:449394/1‑149 (MQ=255)
ggccATCATGCTCATGCCCTGGGGCAGTCTGCCGCCGTCATCCAGCGGCACGACCCGGG‑CCCCGGCGCGATGCCGACGATACTGCCCACCGGCATCAGAAACACCTAGGGCCCGGCAAAGCCCATGACTTCGGCCTCGACCTGCACCgg < 8:101179/147‑1 (MQ=255)
gCCCAGCATGCTCATGCCCATGGGCAGACGGCCGCCGTCATCCAGCGGCACGACCCGGG‑CCCCGGCGCGATGCCGACGATACTGCCCACCGGCATCAGAAACACCTTGGGCCCGGCAAAGCCCATGACTTCGGCCTCGACCTGCACCgg < 5:304025/149‑1 (MQ=255)
cccAGCATGCTCATGCCCATGGGCAGACGGCCGCCGTCATCCAGCGGCACGACCCGGG‑CCCCGGCGCGATGCCGACGATACTGCCCACCGGCATCAGAAACACCTTGGGCCCGGCAAAGCCCATGACTTCGGCCTCGACCTGCACCggg < 5:234832/149‑1 (MQ=255)
caggCATGCTCATGCCCTTGGGCAGACGGCCGCCGTCATCCAGCGGCACGACCCGGG‑CCCCGGCGCGATGCCGACGATACTGCCCACCGGCATCAGAAACACCTTGGGCCCGGCAAAGCCCATGACTTCGGCCTCGACCTGCACCGGGt < 3:245090/146‑1 (MQ=255)
cATGCTCATGCCCATGGGCAGACGGCCGCCGTCATCCAGCGGCACGACCCGGG‑CCCCGGCGCGATGCCGACGATACTGCCCACCGGCATCAGa > 8:211055/1‑93 (MQ=255)
cATGCTCATGCCCATGGGCAGACGGCCGCCGTCATCCAGCGGCACGACCCGGG‑CCCCGGCGCGATGCCGACGATACTGCCCACCGGCATCAGa < 7:211055/93‑1 (MQ=255)
aTGCTCATGCCCATGGGCAGACGGCCGCCGTCATCCAGCGGCACGACCCGGG‑CCCCGGCGCGATGCCGACGATACTGCCCACCGGCATCAGAAACACCTTGGGCCCGGCAAAGCCCATGACTTCGGCCTCGACCTGCACCGGGTGATaa < 5:44844/149‑1 (MQ=255)
tGCTCATGCCCATGGGCAGACGGCCGCCGTCATCCAGCGGCACGACCCGGG‑CCCCGGCGCGATGCCGACGATACTGCCCACCGGCATCAGAAACACCTTGGGCCCGGCAAAGCCCATGACTTCGGCCTCGACCTGCACCGGGTGATAAc < 2:85761/149‑1 (MQ=255)
cTCATGCCCATGGGCAGACGGCCGCCGTCATCCAGCGGCACGACCCGGG‑CCCCGGCGCGATGCCGACGATACTGCCCACCGGCATCAGAAACACCTTGGGCCCGGCAAAGCCCATGACTTCGGCCTCGACCTGCACCGGGTGATAACt < 6:411339/148‑1 (MQ=255)
tCATGCCCATGGGCAGACGGCCGCCGTCATCCAGCGGCACGACCCGGG‑CCCCGGCGCGATGCCGACGATACTGCCCACCGGCATCAGAAACACCTTGGGCCCGGCAAAGCCCATGACTTCGGCCTCGACCTGCACCGGGTGATAACTGt > 8:271339/1‑149 (MQ=255)
gCCCATGGGCAGACGGCCGCCGTCATCCAGCGGCACGACCCGGG‑CCCCGGCGCGATGCCGACGATACTGCCCACCGGCATCAGAAACACCTTGGGCCCGGCAAAGCCCATGACTTCGGCCTCGACCTGCACCGGGTGATAACTGTCATc > 3:100224/1‑149 (MQ=255)
cccATGGGCAGACGGCCGCCGTCATCCAGCGGCACGACCCGGG‑CCCCGGCGCGATGCCGACGATACTGCCCACCGGCATCAGAAACACCTTGGGCCCGGCAAAGCCCATGACTTCGGCCTCGACCTGCACCGGGTGATAACTGTCATCg > 5:265955/1‑149 (MQ=255)
ccATGGGCAGACGGCCGCCGTCATCCAGCGGCACGACCCGGG‑CCCCGGCGCGATGCCGACGATACTGCCCACCGGCATCAGAAACACCTTGGGCCCGGCAAAGCCCATGACTTCGGCCTCGACCTGCACCGGGTGATAACTGTCATCGt > 8:73383/1‑149 (MQ=255)
ctGGGCAGACGGCCGCCGTCATCCAGCGGCACGACCCGGG‑CCCCGGCGCGATGCCGACGATACTGCCCACCGGCATCAGAAACACCTTGGGCCCGGCAAAGCCCATGACTTCGGCCTCGACCCGCACCGGGTGATAACTGTCATCGtt < 3:66425/147‑1 (MQ=255)
aTGGGCAGACGGCCGCCGTCATCCAGCGGCACGACCCGGG‑CCCCGGCGCGATGCCGACGATACTGCCCACCGGCATCAGAAACACCTTGGGCCCGGCAAAGCCCATGACTTCGGCCTCGACCTGCACCGGGTGATAACTGTCATCGtt > 1:157784/1‑148 (MQ=255)
tGGGCAGACGGCCGCCGTCATCCAGCGGCACGACCCGGG‑CCCCGGCGCGATGCCGACGATACTGCCCACCGGCATCAGAAACACCTTGGGCCCGGCAAAGCCCATGACTTCGGCCTCGACCTGCACCGGGTGATAACTGTCATCGTTGa < 4:405432/149‑1 (MQ=255)
ggCAGACGGCCGCCGTCATCCAGCGGCACGACCCGGG‑CCCCGGCGCGATGCCGACGATACTGCCCACCGGCATCAGAAACACCTTGGGCCCGGCAAAGCCCATGACTTCGGCCTCGACCTGCACCGGGTGATAACTGTCATCGTTGAt > 3:121039/1‑148 (MQ=255)
gCAGACGGCCGCCGTCATCCAGCGGCACGACCCGGG‑CCCCGGCGCGATGCCGACGATACTGCCCACCGGCATCAGAAACACCTTGGGCCCGGCAAAGCCCATGACTTCGGCCTCGACCTGCACCGGGTGATAACTGTCATCGTTGATCa > 2:120743/1‑149 (MQ=255)
aGACGGCCGCCGTCATCCAGCGGCACGACCCGGG‑CCCCGGCGCGATGCCGACGATACTGCCCACCGGCATCAGAAACACCTTGGGCCCGGCAAAGCCCATGACTTCGGCCTCGACCTGCACCGGGTGATAACTGTCATCGTTGATCAcc < 3:96932/149‑1 (MQ=255)
aGACGGCCGCCGTCATCCAGCGGCACGACCCGGG‑CCCCGGCGCGATGCCGACGATACTGCCCACCGGCATCAGAAACACCTTGGGCCCGGCAAAGCCCATGACTTCGGCCTCGACCTGCACCGGGTGATAACTGTCATCGTTGATCAc > 2:51269/1‑148 (MQ=255)
gccgccGTCATCCAGCGGCACGACCCGGG‑CCCCGGCGCGATGCCGACGATACTGCCCACCGGCATCAGAAACACCTTGGGCCCGGCAAAGCCCATGACTTCGGCCTCGACCTGCACCGGGTGATAACTGTCATCGTTGATCACCAgg > 7:240447/1‑147 (MQ=255)
ccgccgTCATCCAGCGGCACGACCCGGG‑CCCCGGCGCGATGCCGACGATACTGCCCACCGGCATCAGAAACACCTTGGGCCCGGCAAAGCCCATGACTTCGGCCTCGACCTGCACCGGGTGATAACTGTCATCGTTGATCACCAGGCAg > 4:389092/1‑149 (MQ=255)
ccgccgTCATCCAGCGGCACGACCCGGG‑CCCCGGCGCGATGCCGACGATACTGCCCACCGGCATCAGAAACACCTTGGGCCCGGCAAAGCCCATGACTTCGGCCTCGACCTGCACCGGGTGATAACTGTCATCGTTGATCACCAGGCAg > 5:422677/1‑149 (MQ=255)
gccgTCATCCAGCGGCACGACCCGGG‑CCCCGGCGCGATGCCGACGATACTGCCCACCGGCATCAGAAACACCTTGGGCCCGGCAAAGCCCATGACTTCGGCCTCGACCTGCACCGGGTGATAACTGTCATCGTTGATCACCAGGCAGCg < 3:378569/149‑1 (MQ=255)
gccgTCATCCAGCGGCACGACCCGGG‑CCCCGGCGCGATGCCGACGATACTGCCCACCGGCATCAGAAACACCTTGGGCCCGGCAAAGCCCATGACTTCGGCCTCGACCTGCACCGGGTGATAACTGTCATCGTTGATCACCAGGCAGCg < 3:365932/149‑1 (MQ=255)
ccgTCATCCAGCGGCACGACCCGGG‑CCCCGGCGCGATGCCGACGATACTGCCCACCGGCATCAGAAACACCTTGGGCCCGGCAAAGCCCATGACTTCGGCCTCGACCTGCACCGGGTGATAACTGTCATCGTTGATCACCAGGCAGCgg < 2:291364/149‑1 (MQ=255)
cgTCATCCAGCGGCACGACCCGGG‑CCCCGGCGCGATGCCGACGATACTGCCCACCGGCATCAGAAACACCTTGGGCCCGGCAAAGCCCATGACTTCGGCCTCGACCTGCACCGGGTGATAACTGTCATCGTTGATCACCAGGCAGCGGc > 5:428256/1‑149 (MQ=255)
tCATCCAGCGGCACGACCCGGG‑CCCCGGCGCGATGCCGACGATACTGCCCACCGACATCAGAAACACCTTGGGCCCGGCAAAGCCCATGACTTCGGCCTCGACCTGCACCGGGTGATAACTGTCATCGTTGATCACCAGGCAGCGGCTg < 6:398595/149‑1 (MQ=255)
aTCCAGCGGCACGACCCGGG‑CCCCGGCGCGATGCCGACGATACTGCCCACCGGCATCAGAAACACCTTGGGCCCGGCAAAGCCCATGACTTCGGCCTCGACCTGCACCGGGTGATAACTGTCATCGTTGATCACCAGGCAGCGGCTGc < 6:368224/148‑1 (MQ=255)
ccAGCGGCACGACCCGGG‑CCCCGGCGCGATGCCGACGATACTGCCCACCGGCATCAGAAACACCTTGGGCCCGGCAAAGCCCATGACTTCGGCCTCGACCTGCACCGGGTGATAACTGTCATCGTTGATCACCAGGCAGCGGCTGCCCa > 3:134876/1‑149 (MQ=255)
gCGGCACGACCCGGG‑CCCCGGCGCGATGCCGACGATACTGCCCACCGGCATCAGAAACACCTTGGGCCCGGCAAAGCCCATGACTTCGGCCTCGACCTGCACCGGGTGATAACTGTCATCGTTGATCACCAGGCAGCGGCTGCCCActg < 5:146897/149‑1 (MQ=255)
cGGCACGACCCGGG‑CCCCGGCGCGATGCCGACGATACTGCCCACCGGCATCAGAAACACCTTGGGCCCGGCAAAGCCCATGACTTCGGCCTCGACCTGCACCGGGTGATAACTGTCATCGTTGATCACCAGGCAGCGGCTGCCCActgc < 8:185562/149‑1 (MQ=255)
ggCACGACCCGGG‑CCCCGGCGCGATGCCGACGATACTGCCCACCGGCATCAGAAACACCTTGGGCCCGGCAAAGCCCATGACTTCGGCCTCGACCTGCACCGGGTGATAACTGTCATCGTTGATCACCAGGCAGCGGCTGCCCActgct < 2:167151/149‑1 (MQ=255)
gCACGACCCGGG‑CCCCGGCGCGATGCCGACGATACTGCCCACCGGCATCAGAAACACCTTGGGCCCGGCAAAGCCCATGACTTCGGCCTCGACCTGCACCGGGTGATAACTGTCATCGTTGATCACCAGGCAGCGGCTGCCCActgctg > 4:55269/1‑149 (MQ=255)
gCACGACCCGGG‑CCCCGGCGCGATGCCGACGATACTGCCCACCGGCATCAGAAACACCTTGGGCCCGGCAAAGCCCATGACTTCGGCCTCGACCTGCACCGGGTGATAACTGTCATCGTTGATCACCAGGCAGCGGCTGCCCActgctg > 2:419789/1‑149 (MQ=255)
gCACGACCCGGG‑CCCCGGCGCGATGCCGACGATACTGCCCACCGGCATCAGAAACACCTTGGGCCCGGCAAAGCCCATGACTTCGGCCTCGACCTGCACCGGGTGATAACTGTCATCGTTGATCACCAGGCAGCGGCTGCCCActgctg > 2:38708/1‑149 (MQ=255)
gCACGACCCGGG‑CCCCGGCGCGATGCCGACGATACTGCCCACCGGCATCAGAAACACCTTGGGCCCGGCAAAGCCCATGACTTCGGCCTCGACCTGCACCGGGTGATAACTGTCATCGTTGATCACCAGGCAGCGGCTGCCCActgctg > 4:15574/1‑149 (MQ=255)
cACGACCCGGG‑CCCCGGCGCGATGCCGACGATACTGCCCACCGGCATCAGAAACTCCTTGGGCCCGGCAAAGCCCATGACTTCGGCCTCGACCTGCACCGGGTGATAACTGTCATCGTTGATCACCAGGCAGCGGCTGCCCACtgctgc < 2:157784/149‑1 (MQ=255)
cACGACCCGGG‑CCCCGGCGCGATGCCGACGATACTGCCCACCGGCATCAGAAACACCTTGGGCCCGGCAAAGCCCATGACTTCGGCCTCGACCTGCACCGGGTGATAACTGTCATCGTTGATCACCAGGCAGCGGCTGCCCACtgctgc < 5:364943/149‑1 (MQ=255)
aCGACCCGGG‑CCCCGGCGCGATGCCGACGATACTGCCCACCGGCATCAGAAACACCTTGGGCCCGGCAAAGCCCATGACTTCGGCCTCGACCTGCACCGGGTGATAACTGTCATCGTTGATCACCAGGCAGCGGCTGCCCACTGCTgcg > 5:409325/1‑149 (MQ=255)
cGACCCGGG‑CCCCGGCGCGATGCCGACGATACTGCCCACCGGCATCAGAAACACCTTGGGCCCGGCAAAGCCCATGACTTCGGCCTCGACCTGCACCGGGTGATAACTGTCATCGTTGATCACCAGGCAGCGGCTGCCCACTGCTgcgc < 1:51269/149‑1 (MQ=255)
gACCCGGG‑CCCCGGCGCGATGCCGACGATACTGCCCACCGGCATCAGAAACACCTTGGGCCCGGCAAAGCCCATGACTTCGGCCTCGACCTGCACCGGGTGATAACTGTCATCGTTGATCACCAGGCAGCGGCTGCCCACTGCTgcgcg > 2:86056/1‑149 (MQ=255)
aCCCGGG‑CCCCGGCGCGATGCCGACGATACTGCCCACCGGCATCAGAAACACCTTGGGCCCGGCAAAGCCCATGACTTCGGCCTCGACCTGCACCGGGTGATAACTGTCATCGTTGATCACCAGGCAGCGGCTGCCCACTGCTgcgcg > 7:36323/1‑148 (MQ=255)
cccGGG‑CCCCGGCGCGATGCCGACGATACTGCCCACCGGCATCAGAAACACCTTGGGCCCGGCAAAGCCCATGACTTCGGCCTCGACCTGCACCGGGTGATAACTGTCATCGTTGATCACCAGGCAGCGGCTGCCCACTGCTgcgcg > 6:254272/1‑147 (MQ=255)
ccGGGCCCCCGGCGCGATGCCGACGATACTGCCCACCGGCATCAGAAACACCTTGGGCCCGGCAAAGCCCATGACTTCGGCCTCGACCTGCACCGGGTGATAACTGTCATCGTTGATCACCAGGCAGCGGCTGCCCACTGCTGCGCGCa < 4:385147/149‑1 (MQ=255)
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TTGATCACCGGGCCGTCCATCGGCACCCAGTCCTCGGCCTTCATCCCGCCCTTGCCATCCAGCGCACGGCCGGCGCCGTCGAGCACCCGGCCCAGCATGCTCATGCCCATGGGCAGACGGCCGCCGTCATCCAGCGGCACGACCCGGGCCCCCGGCGCGATGCCGACGATACTGCCCACCGGCATCAGAAACACCTTGGGCCCGGCAAAGCCCATGACTTCGGCCTCGACCTGCACCGGGTGATAACTGTCATCGTTGATCACCAGGCAGCGGCTGCCCACTGCTGCGCGCA > NC_002947_CJ‑RC/4958018‑4958309
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| Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
BRESEQ :: bam2aln output
ATCACCGGGCCGTCCATCGGCACCCAGTCCTCGGCCTTCATCCCGCCCTTGCCATCCAGCGCACGGCCGGCGCCGTCGAGCACCCGGCCCA‑GCATGCTCATGCCCATGGGCAGACGGCCGCCGTCATCCAGCGGCACGACCCGGGCCCCCGGCGCGATGCCGACGATACTGCCCACCGGCATCAGAAACACCTTGGGCCCGGCAAAGCCCATGACTTCGGCCTCGACCTGCACCGGGTGATAACTGTCATCGTTGATCACCAGGCAGCGGCTGCCCACTGCTGCGCGCAGGCCTTCGG > NC_002947_CJ‑RC/4958021‑4958318
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ATCACCGGGCCGTCCATCGGCACCCAGTCCTCGGCCTTCATCCCGCCCTTGCCATCCAGCGCACGGCCGGCGCCGTCGAGCACCCGGCCCA‑GCATGCTCATGCCCATGGGCAGACGGCCGCCGTCATCCAGCGGCACGACCCGGGCCCCGG > NB501016:282:H2V7GAFX2:4:11604:21380:19003/1‑151 (MQ=60)
ATCACCGGGCCGTCCATCGGCACCCAGTCCTCGGCCTTCATCCCGCCCTTGCCATCCAGCGCACGGCCGGCGCCGTCGAGCACCCGGCCCA‑GCATGCTCATGCCCATGGGCAGACGGCCGCCGTCATCCAGCGGCACGACCCGGGCCCCGG > NB501016:282:H2V7GAFX2:3:21605:15635:18381/1‑151 (MQ=60)
ACCGGGCCGTCCATCGGCACCCAGTCCTCGGCCTTCATCCCGCCCTTGCCATCCAGCGCACGGCCGGCGCCGTCGAGCACCCGGCCCA‑GCATGCTCATGCCCATGGGCAGACGGCCGCCGTCATCCAGCGGCACGACCCGGGCCCCCGGCG > NB501016:282:H2V7GAFX2:2:21304:19143:1717/1‑151 (MQ=60)
CGTCCATCGGCACCCAGTCCTCGGCCTTCATCCCGCCCTTGCCATCCAGCGCACGGCCGGCGCCGTCGAGCACCCGGCCCA‑GCATGCTCATGCCCATGGGCAGACGGCCGCCGTCATCCAGCGGCACGACCCGGG‑CCCCGGCGCGATGCCG > NB501016:282:H2V7GAFX2:2:11306:19631:4288/1‑151 (MQ=60)
CATCGGCACCCAGTCCTCGGCCTTCATCCCGCCCTTGCCATCAAGCGCACGGCCGGCGCCGTCGAGCACCCGGCCCA‑GCATGCTCATGCCCATGGGCAGACGGCCCCCGTCATCCAGCGGCACGACCCGGG‑CCCCGGCGCGATGCCGACG > NB501016:282:H2V7GAFX2:4:11610:17333:4463/1‑150 (MQ=60)
CCTCGGCCTTCATCCCGCCCTTGCCATCCAGCGCACGGCCGGCGCCGTCGAGCACCCGGCCCA‑GCATGCTCATGCCCATGGGCAGACGGCCGCCGTCATCCAGCGGCACGACCCGGG‑CCCCGGCGCGATGCCGACGATACTGCCCACCGGC < NB501016:282:H2V7GAFX2:4:11510:24252:16679/151‑1 (MQ=60)
CGGCCTTCATCCCGCCCTTGCCATCCAGCGCACGGCCGGCGCCGTCGAGCACCCGGCCCA‑GCATGCTCATGCCCATGGGCTGACGGCCGCCGTCATCCAGCGGCACGACCCGGG‑CCCCGGCGCGATGCCGACGATACTGCCCACCGGCATC > NB501016:282:H2V7GAFX2:3:21511:5792:11244/1‑151 (MQ=60)
CGGCCTTCATCCCGCCCTTGCCATCCAGCGCACGGCCGGCGCCGTCGAGCACCCGGCCCA‑GCATGCTCATGCCCATGGGCAGACGGCCGCCGTCATCCAGCGGCACGACCCGGG‑CCCCGGCGCGATGCCGACGATAC < NB501016:282:H2V7GAFX2:4:21507:1241:9690/137‑1 (MQ=60)
GGCCTTCATCCCGCCCTTGCCATCCAGCGCACGGCCGGCGCCGTCGAGCACCCGGCCCA‑GCATGCTCATGCCCATGGGCAGACGGCCGCCGTCATCCAGCGGCACGACCCGGG‑CCCCGGCGCGATGCCGACGATACTGCCCACCGGCATC > NB501016:282:H2V7GAFX2:1:21109:7379:14509/1‑150 (MQ=60)
CCTTCATCCCGCCCTTGCCATCCAGCGCACGGCCGGCGCCGTCGAGCACCCGGCCCA‑GCATGCTCATGCCCATGGGCAGACGGCCGCCGTCATCCAGCGGCACGACCCGGG‑CCCCGGCGCGATGCCGACGATACTGCCCACCGGCATCAGA < NB501016:282:H2V7GAFX2:1:21203:17442:20209/151‑1 (MQ=60)
CATCCCGCCCTTGCCATCCAGCGCACGGCCGGCGCCGTCGAGCACCCGGCCCA‑GCATGCTCATGCCCATGGGCAGACGGCCGCCGTCATCCAGCGGCACGACCCGGG‑CCCCGGCGCGATGCCGACGATACTGCCCACCGGCATCAGAAAC < NB501016:282:H2V7GAFX2:1:11111:13821:16578/150‑1 (MQ=60)
CGCCATTGCCATCCAGCGCACGGCCGGCGCCGTCGAGCACCCGGCCCA‑GAATGCTCATGCCCATGGGCAGACGGCCGCCGTCATCCAGCGGCACGACCCGGG‑CCCCGGCGCGATGCCGACGATACTGCCCACCGGCATCAGAAACACCTTG < NB501016:282:H2V7GAFX2:2:11111:22046:1928/151‑1 (MQ=60)
CCATCCAGCGCACGGCCGGCGCCGTCGAGCACCCGGCCCA‑GCATGCTCATGCCCATGGGCAGACGGCCGCCGTCATCCAGCGGCACGACCCGGG‑CCCCGGCGCGATGCCGACGATACTGCCCACCGGCATCAGAAACACCTTGGGCCCGGC > NB501016:282:H2V7GAFX2:1:11106:22284:19969/1‑151 (MQ=60)
GCGCACGGCCGGCGCCGTCGAGCACTCGGCCCA‑GCATGCTCATGCCCATGGGCAGACGGCCGCCGTCATCCAGCGGCACGACCCGGG‑CCCCGGCGCGATGCCGACGATACTGCCCACCGGCATCAGAAACACCTTGGGCCCGGCAAAGCCC < NB501016:282:H2V7GAFX2:3:21605:7873:4860/151‑1 (MQ=60)
GCACGGCCGGCGCCGTCGAGCACCCGGCCCA‑GCATGCTCATGCCCATGGGCAGACGGCCGCCGTCATCCAGCGGCACGACCCGGG‑CCCCGGCGCGATGCCGACGATACTGCCCACCGGCATCAGAAACACCTTGGGCCCGGCAAAGCCCAT > NB501016:282:H2V7GAFX2:2:21309:10855:7988/1‑151 (MQ=60)
GCACGGCCGGCGCCGTCGAGCACCCGGCCCA‑GCATGCGCATGCCCATGGGCAGACGGCCGCCGTCATCCAGCGGCACGACCCGGG‑CCCCGGCGCGATGCCGACGATACTGCCCACCGGCATCAGAAACACCTTGGGCCCGGCAAAGCCCAT < NB501016:282:H2V7GAFX2:1:11309:7831:5904/151‑1 (MQ=60)
CGGCCGGCGCCGGCGAGCACCCGGCCCA‑GCATGCTCATGCCCATGGGCAGACGGCCGCCGTCATCCAGCGGCACGACCCGGG‑CCCCGGCGCGATGCCGACGATACTGCCCACCGGCATCAGAAACACCTTGGGCCCGGCAAAGCCCATGAC < NB501016:282:H2V7GAFX2:1:11308:10233:16341/151‑1 (MQ=60)
CCGTCGAGCACCCGGCCCA‑GCATGCTCATGCCCATGGGCAGACGGCCGCCGTCATCCAGCGGCACGACCCGGG‑CCCCGGCGCGATGCCGACGATACTGCCCACCGGCATCAGAAACACCTTGGGCCCGGCAAAGCCCATGACTTCGGCCTC < NB501016:282:H2V7GAFX2:2:21305:20070:1566/151‑1 (MQ=60)
CCGTCGAGCACCCGGCCCA‑GCATGCTCATGCCCATGGGCAGACGGCCGCCGTCATCCAGCGGCACGACCCGGG‑CCCCGGCGCGATGCCGACGATACTGCCCACCGGCATCAGAAACACCTTGGGCCCGGCAAAGCCCATGACTTCGGCCTC > NB501016:282:H2V7GAFX2:2:21309:4638:20205/1‑151 (MQ=60)
CCGTCGAGCACCCGGCCCA‑GCATGCTCATGCCCATGGGCAGACGGCCGCCGTCATCCAGCGGCACGACCCGGG‑CCCCGGCGCGATGCCGACGATACTGCCCACCGGCATCAGAAACACCTTGGGCCCGGCAAAGCCCATGACTTCGGCCTC < NB501016:282:H2V7GAFX2:1:11108:23180:2635/151‑1 (MQ=60)
CGAGCACCCGGCCCA‑GCATGCTCATGCCCATGGGTAGACGGCCGCCGTCATCCAGCGGCACGACCCGGG‑CCCCGGCGCGATGCCGACGATACTGCCCACCGGCATCAGAAACACCTTGGGCCCGGCAAAGCCCATGACTTCGGCCTCGACC > NB501016:282:H2V7GAFX2:2:11110:21180:15512/1‑151 (MQ=60)
GAGCACCCGGCCCA‑GCATGCTCATGCCCATGGGCAGACGGCCGCCGTCATCCAGCGGCACGACCCGGG‑CCCCGGCGCGATGCCGACGATACTGCCCACCGGCATCAGAAACACCTTGGGCCCGGCAAAGCCCATGACTTCGGCCTCGACCT < NB501016:282:H2V7GAFX2:1:21106:9489:3790/151‑1 (MQ=60)
GGCCCA‑GCATGCTCATGCCCATGGGCAGACGGCCGCCGTCATCCAGCGGCACGACCCGGG‑CCCCGGCGCGATGCCGACGATACTGCCCACCGGCATCAGAAACACCTTGGGCCCGGCAAAGCCCATGACTTCGGCCTCGACCTGCACCGGG < NB501016:282:H2V7GAFX2:3:21501:8423:3776/151‑1 (MQ=60)
CCCCA‑GCATGCTCATGCCCATGGGCAGACGGCCGCCGTCATCCAGCGGCACGACCCGGG‑CCCCGGCGCGATGCCGACGATACTGCCCACCGGCATCAGAAACACCTTGGGCCCGGCAAAGCCCATGACTTCGGCCTCGACCTGCACCGGGC < NB501016:282:H2V7GAFX2:3:21401:19802:6179/151‑1 (MQ=60)
CCCA‑GCATGCTCATGCCCATGGGCAGACGGCCGCCGTCATCCAGCGGCACGACCCGGG‑CCCCGGCGCGATGCCGACGATACTGCCCACCGGCATCAGAAACCCCTTGGGCCCGGCAAAGCCCATGCCTTCGGCCGCGACCTGCACCGGGTG > NB501016:282:H2V7GAFX2:1:11109:2182:1440/1‑151 (MQ=60)
CCAGGCATGCTCATGCCCTTGGGCAGACGGCCGCCGTCATCCAGCGGCACGACCCGGG‑CCCCGGCGCGATGCCGACGATACTGCCCACCGGCATCAGAAACACCTTGGGCCCGGCAAAGCCCATGACTTCGGCCTCGACCTGCACCGGGTG < NB501016:282:H2V7GAFX2:2:21102:23856:17156/151‑1 (MQ=60)
GCATGCTCATGCCCATGGGCAGACGGCCGCCGTCATCCAGCGGCACGACCCGGG‑CCCCGGCGCGATGCCGACGATACTGCCCACCGGCATCAGAA < NB501016:282:H2V7GAFX2:4:11608:12307:20178/95‑1 (MQ=60)
CATGCTCATGCCCATGGGCAGACGGCCGCCGTCATCCAGCGGCACGACCCGGG‑CCCCGGCGCGATGCCGACGATACTGCCCACCGGCATCAGAAACACCTTGGGCCCGGCAAAGCCCATGACTTCGGCCTCGACCTGCACCGGGTGATAAC < NB501016:282:H2V7GAFX2:3:11408:6383:6450/151‑1 (MQ=60)
TGCCCATGGGCAGACGGCCGCCGTCATCCAGCGGCACGACCCGGG‑CCCCGGCGCGATGCCGACGATACTGCCCACCGGCATCAGAAACACCTTGGGCCCGGCAAAGCCCATGACTTCGGCCTCGACCTGCACCGGGTGATAACTGTCATCG > NB501016:282:H2V7GAFX2:2:11204:12277:19133/1‑151 (MQ=60)
GCCCATGGGCAGACGGCCGCCGTCATCCAGCGGCACGACCCGGG‑CCCCGGCGCGATGCCGACGATACTGCCCACCGGCATCAGAAACACCTTGGGCCCGGCAAAGCCCATGACTTCGGCCTCGACCTGCACCGGGTGATAACTGTCATCGT > NB501016:282:H2V7GAFX2:3:21406:13715:13967/1‑151 (MQ=60)
gcTGGGCAGACGGCCGCCGTCATCCAGCGGCACGACCCGGG‑CCCCGGCGCGATGCCGACGATACTGCCCACCGGCATCAGAAACACCTTGGGCCCGGCAAAGCCCATGACTTCGGCCTCGACCCGCACCGGGTGATAACTGTCATCGTTG < NB501016:282:H2V7GAFX2:2:11111:15290:12736/148‑1 (MQ=60)
CATGGGCAGACGGCCGCCGTCATCCAGCGGCACGACCCGGG‑CCCCGGCGCGATGCCGACGATACTGCCCACCGGCATCAGAAACACCTTGGGCCCGGCAAAGCCCATGACTTCGGCCTCGACCTGCACCGGGTGATAACTGTCATCGTTG > NB501016:282:H2V7GAFX2:1:11212:20353:11217/1‑150 (MQ=60)
GGGCAGACGGCCGCCGTCATCCAGCGGCACGACCCGGG‑CCCCGGCGCGATGCCGACGATACTGCCCACCGGCATCAGAAACACCTTGGGCCCGGCAAAGCCCATGACTTCGGCCTCGACCTGCACCGGGTGATAACTGTCATCGTTGATC > NB501016:282:H2V7GAFX2:2:11208:5619:3533/1‑150 (MQ=60)
CAGACGGCCGCCGTCATCCAGCGGCACGACCCGGG‑CCCCGGCGCGATGCCGACGATACTGCCCACCGGCATCAGAAACACCTTGGGCCCGGCAAAGCCCATGACTTCGGCCTCGACCTGCACCGGGTGATAACTGTCATCGTTGATCACCA < NB501016:282:H2V7GAFX2:2:11204:21974:9277/151‑1 (MQ=60)
GGCCGCCGTCATCCAGCGGCACGACCCGGG‑CCCCGGCGCGATGCCGACGATACTGCCCACCGGCATCAGAAACACCTTGGGCCCGGCAAAGCCCATGACTTCGGCCTCGACCTGCACCGGGTGATAACTGTCATCGTTGATCACCAGGC > NB501016:282:H2V7GAFX2:4:21401:11141:12918/1‑149 (MQ=60)
GCCGCCGTCATCCAGCGGCACGACCCGGG‑CCCCGGCGCGATGCCGACGATACTGCCCACCGGCATCAGAAACACCTTGGGCCCGGCAAAGCCCATGACTTCGGCCTCGACCTGCACCGGGTGATAACTGTCATCGTTGATCACCAGGCAGC > NB501016:282:H2V7GAFX2:3:21607:1406:13452/1‑151 (MQ=60)
CGCCGTCATCCAGCGGCACGACCCGGG‑CCCCGGCGCGATGCCGACGATACTGCCCACCGGCATCAGAAACACCTTGGGCCCGGCAAAGCCCATGACTTCGGCCTCGACCTGCACCGGGTGATAACTGTCATCGTTGATCACCAGGCAGCGG < NB501016:282:H2V7GAFX2:2:21302:20255:19449/151‑1 (MQ=60)
CGCCGTCATCCAGCGGCACGACCCGGG‑CCCCGGCGCGATGCCGACGATACTGCCCACCGGCATCAGAAACACCTTGGGCCCGGCAAAGCCCATGACTTCGGCCTCGACCTGCACCGGGTGATAACTGTCATCGTTGATCACCAGGCAGCGG < NB501016:282:H2V7GAFX2:2:21212:12870:13519/151‑1 (MQ=60)
CCGTCATCCAGCGGCACGACCCGGG‑CCCCGGCGCGATGCCGACGATACTGCCCACCGGCATCAGAAACACCTTGGGCCCGGCAAAGCCCATGACTTCGGCCTCGACCTGCACCGGGTGATAACTGTCATCGTTGATCACCAGGCAGCGGCT > NB501016:282:H2V7GAFX2:3:21608:25047:10942/1‑151 (MQ=60)
TCCAGCGGCACGACCCGGG‑CCCCGGCGCGATGCCGACGATACTGCCCACCGGCATCAGAAACACCTTGGGCCCGGCAAAGCCCATGACTTCGGCCTCGACCTGCACCGGGTGATAACTGTCATCGTTGATCACCAGGCAGCGGCTGCCCAC > NB501016:282:H2V7GAFX2:2:11210:9567:6345/1‑151 (MQ=60)
AGCGGCACGACCCGGG‑CCCCGGCGCGATGCCGACGATACTGCCCACCGGCATCAGAAACACCTTGGGCCCGGCAAAGCCCATGACTTCGGCCTCGACCTGCACCGGGTGATAACTGTCATCGTTGATCACCAGGCAGCGGCTGCCCACTGC < NB501016:282:H2V7GAFX2:3:11512:3461:4655/151‑1 (MQ=60)
GCACGACCCGGG‑CCCCGGCGCGATGCCGACGATACTGCCCACCGGCATCAGAAACACCTTGGGCCCGGCAAAGCCCATGACTTCGGCCTCGACCTGCACCGGGTGATAACTGTCATCGTTGATCACCAGGCAGCGGCTGCCCACTGCTGCG < NB501016:282:H2V7GAFX2:3:21511:17958:1377/151‑1 (MQ=60)
CACGACCCGGG‑CCCCGGCGCGATGCCGACGATACTGCCCACCGGCATCAGAAACACCTTGGGCCCGGCAAAGCCCATGACTTCGGCCTCGACCTGCACCGGGTGATAACTGTCATCGTTGATCACCAGGCAGCGGCTGCCCACTGCTGCGC > NB501016:282:H2V7GAFX2:3:21605:7678:12567/1‑151 (MQ=60)
ACGACCCGGG‑CCCCGGCGCGATGCCGACGATACTGCCCACCGGCATCAGAAACACCTTGGGCCCGGCAAAGCCCATGACTTCGGCCTCGACCTGCACCGGGTGATAACTGTCATCGTTGATCACCAGGCAGCGGCTGCCCACTGCTGCGCG < NB501016:282:H2V7GAFX2:1:11108:12976:7748/151‑1 (MQ=60)
GACCCGGG‑CCCCGGCGCGATGCCGACGATACTGCCCACCGGCATCAGAAACACCTTGGGCCCGGCAAAGCCCATGACTTCGGCCTCGACCTGCACCGGGTGATAACTGTCATCGTTGATCACCAGGCAGCGGCTGCCCACTGCTGCGCGC > NB501016:282:H2V7GAFX2:4:11406:13092:8700/1‑150 (MQ=60)
CGGG‑CCCCGGCGCGATGCCGACGATACTGCCCACCGGCATCAGAAACACCTTGGGCCCGGCAAAGCCCATGACTTCGGCCTCGACCTGCACCGGGTGATAACTGTCATCGTTGATCACCAGGCAGCGGCTGCCCACTGCTGCGCGCAGGCC < NB501016:282:H2V7GAFX2:4:21612:19483:15671/151‑1 (MQ=60)
CCCGGCGCGATGCCGACGATACTGCCCACCGGCATCAGAAACACCTTGGGCCCGGCAAAGCCCATGACTTCGGCCTCGACCTGCACCGGGTGATAACTGTCATCGTTGATCACCAGGCAGCGGCTGCCCACTGCTGCGCGCAGGCCTTCGG < NB501016:282:H2V7GAFX2:3:21603:23418:19141/151‑1 (MQ=60)
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ATCACCGGGCCGTCCATCGGCACCCAGTCCTCGGCCTTCATCCCGCCCTTGCCATCCAGCGCACGGCCGGCGCCGTCGAGCACCCGGCCCA‑GCATGCTCATGCCCATGGGCAGACGGCCGCCGTCATCCAGCGGCACGACCCGGGCCCCCGGCGCGATGCCGACGATACTGCCCACCGGCATCAGAAACACCTTGGGCCCGGCAAAGCCCATGACTTCGGCCTCGACCTGCACCGGGTGATAACTGTCATCGTTGATCACCAGGCAGCGGCTGCCCACTGCTGCGCGCAGGCCTTCGG > NC_002947_CJ‑RC/4958021‑4958318
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| Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 0 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
