Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A3 F24 I1 R1
|
58 |
74.9 |
3151412 |
98.7% |
3110443 |
147.7 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| JC |
NC_002947_CJ‑RC |
4,715,455 |
(CTGAGCCTGGCC)1→2 |
coding (579/1932 nt) |
PP_4173 → |
two‑component system sensor histidine kinase/response regulator |
|
| |
seq id |
position |
reads (cov) |
reads (cov) |
score |
skew |
freq |
annotation |
gene |
product |
| * |
? |
NC_002947_CJ‑RC |
4715436 = | 4 (0.050) | 59 (0.850) |
52/278 |
0.4 |
96.9% |
coding (560/1932 nt) |
PP_4173 |
two‑component system sensor histidine kinase/response regulator |
| ? | NC_002947_CJ‑RC |
= 4715447 |
0 (0.000) | coding (571/1932 nt) |
PP_4173 |
two‑component system sensor histidine kinase/response regulator |
GCTCCAGGGCGCTGGCCAGGTTATTGATGTGGCGGGCCAAGTGGCCCAGCTCGCTGTCGTCGACGACCGGCAAGGGGGTGTTGTACTCGCCTTGCTGAATCGCCTTGACCGCATGGCCCATGTCGCTGATCGGCTTGGCCAGGCTCAGGGCCAGGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_002947_CJ‑RC/4715591‑4715436
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ggccaggcTCAGGGCCAGGCGGCGTGCCAGCAAGAAGGTGAACAGCAGGGCGAACAACGCCAGGATTCCGGCCTTGATCACGATTTCCTGCTGGCGCTGACTGAAGGCGTCATCGGACATGCCGACGATCACGCGGCCCAGGTAGTCGTCAC < NC_002947_CJ‑RC/4715447‑4715304
GCTCCAGGGCGCTGGCCAGGTTATTGATGTGGCGGGCCAAGTGGCCCAGCTCGCTGTCGTCGACGACCGGCAAGGGGGTGTTGTACTCGCCTTGCTGAATCGCCTTGACCGCATGGCCCATGTCGCTGATCGGCTTGGCCAGGCTCAGG > 2:312506/1‑149
CTCCAGGGCGCTGGCCAGGTTATTGATGTGGCGGGCCAAGTGGCCCAGCTCGCTGTCGTCGACGACCGGCAAGGGGGTGTTGTACTCGCCTTGCTGAATCGCCTTGACCGCATGGCCCATGTCGCTGATCGGCTTGGCCAGGCTCAGGG > 6:162013/1‑149
CTCCAGGGCGCTGGCCAGGTTATTGATGTGGCGGGCCAAGTGGCCCAGCTCGCTGTCGTCGACGACCGGCAAGGGGGTGTTGTACTCGCCTTGCTGAATCGCCTTGACCGCATGGCCCATGTCGCTGATCGGCTTGGCCAGGCTCAGG < 8:1487/148‑1
CTCCAGGGCGCTGGCCAGGTTATTGATGTCGCGGGCCAAGTGGCCCAGCTCGCTGTCGTCGACGACCGGCAATGGGGTGTTGTACTCGCCTTGCTGAATCGCCTTGACCGCATGGCCCATGTCGCTGATCGGCTTGGCCAGGCTCAGGG < 5:304235/149‑1
AGGGCGCTGGCCAGGTTATTGATGTGGCGGGCCAAGTGGCCCAGCTCGCTGTCGTCGACGACCGGCAAGGGGGTGTTGTACTCGCCTTGCTGAATCGCCTTGACCGCATGGCCCATGTCGCTGATCGGCTTGGCCAGGCTCAGGGCCAG > 6:307947/1‑149
TGGCCAGGTTATTGATGTGGCGGGCCAAGTGGCCCAGCTCGCTGTCGTCGACGACCGGCAAGGGGGTGTTGTACTCGCCTTGCTGAATCGCCTTGACCGCATGGCCCATGTCGCTGATCGGCTTGGCCAGGCTCAGGGCCAGGCTCAGG > 6:86181/1‑149
GCCAGGTTATTGATGTGGCGGGCCAAGTGGCCCAGCTCGCTGTCGTCGACGACCGGCAAGGGGGTGTTGTACTCGCCTTGCTGAATCGCCTTGACCGCATGGCCCATGTCGCTGATCGGCTTGGCCAGGCTCAGGGCCAGGCTCAGGGC > 8:30683/1‑149
CAGGTTATTGATGTGGCGGGCCAAGTGGCCCAGCTCGCTGTCGTCGACGACCGGCAAGGGGGTGTTGTACTCGCCTTGCTGAATCGCCTTGACCGCATGGCCCATGTCGCTGATCGGCTTGGCCAGGCTCAGGGCCAGGCTCAGGGC > 5:135224/1‑147
CAGGATATTGATGTGGCGGGCCAAGTGGCCCAGCTCGCTGTCGTCGACGACCGGCAAGGGGGTGTTGTACTCGCCTTGCTGAATCGCCTTGACCGCATGGCCCATGTCGCTGATCGGCTTGGCCAGGCTCAGGGCCAGGCTCAGGGC > 8:38086/1‑147
TGATGTGGCGGGCCAAGTGGCCCAGCTCGCTGTCGTCGACGACCGGCAAGGGGGTGTTGTACTCGCCTTGCTGAATCGCCTTGACCGCATGGCCCATGTAGCTGATCGGCTTGGCCAGGCTCAGGGCCAGGCTCAGGGCAAGGCGGCGT > 3:170798/1‑149
ATGTGGCGGGCCAAGTGGCCCAGCTCGCTGTCGTCGACGACCGGCAAGGGGGTGTTGTACTCGCCTTGCTGAATCGCCTTGACCGCATGGCCCATGTCGCTGATCGGCTTGGCCAGGCTCAGGGCCAGGCTCAGGGCCAGGCGGCGTGC < 1:131632/149‑1
TGGCGGGCCAAGTGGGCCAGCTCGCTGTCGTCGACGACCGGCAAGGGGGTGTTGTACTCGCCTTGCTGAATCGCCTTGACCGCATGGCCCATGTCGCTGATCGGCTTGGCCAGGCTCAGGGCCAGGCTCAGGGCCAGGCGGCGTGCCA < 2:148286/148‑1
GGGCCAAGTGGCCCAGCTCGCTGTCGTCGACGACCGGCAAGGGGGTGTTGTACTCGCCTTGCTGAATCGCCTTGACCGCATGGCCCATGTCGCTGATCGGCTTGGCCAGGCTCAGGGCCAGGCTCAGGGCCAGGCGGCGTGCCAGC > 5:361615/1‑146
CCAAGTGGCCGAGCTCGCTGTCGTCGACGACCGGCAAGGGTGTGTTGTACTCGCCTTGCTGAATCGCCTTGACCGCATGGCCCATGTCGCTGATCGGCTTGGCCAGGCTCAGGGCCAGGCTCAGGGCCAGGCGGCGTGCCAGCAAGAAG < 1:157326/149‑1
CCAAGTGGCCCAGCTCGCTGTCGTCGACGACCGGCAAGGGGGTGTTGTACTCGCCTTGCTGAATCTCCTTGACCGCATGGCCCATGTCGCTGATCGGCTTGGCCAGGCTCAGGGCCAGGCTCAGGGCCAGGCGGCGTGCCAGCAAGAAG < 8:266621/149‑1
CCAAGTGGCCCAGCTCGCTGTCGTCGACGACCGGCAAGGGGGTGTTGTACTCGCCTTGCTGAATCGCCTTGACCGCATGGCCCATGTCGCTGATCGGCTTGGCCAGGCTCAGGGCCAGGCTCAGGGCCAGGCGGCGTGCCAGCAAGAAG > 6:200279/1‑149
AAGTGGCCCAGCTCGCTGTCGTCGACGACCGGCAAGGGGGTGTTGTACTCGCCTTGCTGAATCGCCTTGACCGCATGGCCCATGTCGCTGATCGGCTTGGCCAGGCTCAGGGCCAGGCTCAGGGCCAGGCGGCGTGCCAGCAAGAAGGT > 5:142705/1‑149
GCCCAGCTCGCTGTCGTCGACGACCGGCAAGGGGGTGTTGTACTCGCCTTGCTGAATCGCCTTGACCGCATGGCCCATGTCGCTGATCGGCTTGGCCAGGCTCAGGGCCAGGCTCAGGGCCAGGCGGCGTGCCAGCAAGAAGGTGAACA < 1:39030/149‑1
GCCCAGCTCGCTGTCGTCGACGACCGGCAAGGGGGTGTTGTACTCGCCTTGCTGAATCGCCTTGACCGCATGGCCCATGTCGCTGATCGGCTTGGCCAGGCTCAGGGCCAGGCTCAGGGCCAGGCGGCGTGCCAGCAAGAAGGTGAA > 5:367509/1‑147
GCCCAGCTCGCTGTCGTCGACGACCGGCAAGGGGATGTTGTACTCGCCTTGCTGAATCGCCTTGACCGCATGGCCCATGTCGCTGATCGGCTTGGCCAGGCTCAGGGCCAGGCTCAGGGCCAGGCGGCGTGCCAGCAAGAAGGTGAAC < 2:62990/148‑1
GCTCGCTGTCGTCGACGACCGGCAAGGGGGTGTTGTACTCGCCTTGCTGAATCGCCTTGACCGCATGGCCCATGTCGCTGATCGGCTTGGCCAGGCTCAGGGCCAGGCTCAGGGCCAGGCGGCGTGCCAGCAAGAAGGTGAACAGCAGG < 8:240685/149‑1
GCTGTCGTCGACGACCGGCAAGGGGGTGTTGTACTCGCCTTGCTGGATCGCCTTGACCGCATGGCCCATGTCGCTGATCGGCTTGGCCAGGCTCAGGGCCAGGCTCAGGGCCAGGCGGCGTGCCAGCAAGAAGGTGAACAGCAGGGCGA < 2:151662/149‑1
TGTCGTCGACGCCCGGCAAGGGGGTGTTGTACTCGCCTTGCTGAATCGCCTTGCCCGCATGGCCCATGTCGCTGATCGGCTTGGCCAGGCTCAGGGCCAGGCTCAGGGCCAGGCGGCGTGCCAGCAAGAAGGTGAACAGCAGGGCGAA > 5:117589/1‑148
TGTCGTCGACGACCGGCAAGGGGGTGTTGTACTCGCCTTGCTGAATCGCCTTGACCGCATGGCCCATGTCGCTGATCGGCTTGGCCAGGCTCAGGGCCAGGCTCAGGGCCAGGCGGCGTGCCAGCAAGAAGGTGAACAGCAGGGCGAA > 3:252826/1‑148
GTCGTCGACGACCGGCAAGGGGGTGTTGTACTCGCCTTGCTGAATCGCCTTGACCGCATGGCCCATGTCGCTGATCGGCTTGGCCAGGCTCAGGGCCAGGCTCAGGGCCAGGCGGCGTGCCAGCAAGAAGGTGAACAGCAGGGCGAAC > 2:12466/1‑148
CGTCGACGACCGGCAAGGGGGTGTTGTACTCGCCTTGCTGAATCGCCTTGACCGCATGGCCCATGTCGCTGATCGGCTTGGCCAGGCTCAGGGCCAGGCTCAGGGCCAGGCGGCGTGCCAGCAAGAAGGTGAACAGCAGGGCGAACAAC > 3:284599/1‑149
GTCGACGACCGGCAAGGGGGTGTTGTACTCGCCTTGCTGAATCGCCTTGACCGCATGGCCCATGTCGCTGATCGGCTTGGCCAGGCTCAGGGCCAGGCTCAGGGCCAGGCGGCGTGCCAGCAAGAAGGTGAACAGCAGGGCGAACAACG > 7:24983/1‑149
CGACGACCGGCAAGGGGGTGTTGTACTCGCCTTGCTGAATCGCCTTGACCGCATGGCCCATGTCGCTGATCGGCTTGGCCAGGCTCAGGGCCAGGCTCAGGGCCAGGCGGCGTGCCAGCAAGAAGGTGAACAGCAGGGCGAACAACGC > 1:187239/1‑148
GACGACCGGCAAGGGGGTGTTGTACTCGCCTTGCTGAATCGCCTTGACCGCATGGCCCATGTCGCTGATCGGCTTGGCCAGGCTCAGGGCCAGGCTCAGGGCCAGGCGGCGTGCCAGCAAGAAGGTGAACAGCAGGGCGAACAACGCCA < 4:102068/149‑1
ACGACCGGCAAGGGGGTGTTGTACTCGCCTTGCTGAATCGCCTTGACCGCATGGCCCATGTCGCTGATCGGCTTGGCCAGGCTCAGGGCCAGGCTCAGGGCCAGGCGGCGTGCCAGCAAGAAGGTGAACAGCAGGGCGAACAACGCCAG > 2:258562/1‑149
ACGACCGGCAAGGGGGTGTTGTACTCGCCTTGCTGAATCGCCTTGACCGCATGGCCCATGTCGCTGATCGGCTTGGCCAGGCTCAGGGCCAGGCTCAGGGCCAGGCGGCGTGCCAGCAAGAAGGTGAACAGCAGGGCGAACAACGCCAG > 5:340045/1‑149
GACCGGCAAGGGGGTGTTGTACTCGCCTTGCTGAATCGCCTTGACCGCATGGCCCATGTCGCTGATCGGCTTGGCCAGGCTCAGGGCCAGGCTCAGGGCCAGGCGGCGTGCCAGCAAGAAGGTGAACAGCAGGGCGAACAACGCCAGGA > 6:203965/1‑149
GGGGGTGTTGTACTCGCCTTGCTGAATCGCCTTGACCGCATGGCCCATGTCGCTGATCGGCTTGGCCAGGCTCAGGGCCAGGCTCAGGGCCAGGCGGCGTGCCAGCAAGAAGGTGAACAGCAGGGCGAACAACGCCAGGATTCCGGCCT < 4:374923/149‑1
GGGGTGTTGTACTCGCCTTGCTGAATCGCCTTGACCGCATGGCCCATGTCGCTGATCGGCTTGGCCAGGCTCAGGGCCAGGCTCAGGGCCAGGCGGCGTGCCAGCAAGAAGGTGAACAGCAGGGCGAACAACGCCAGGATTCCGGCCTT < 2:82652/149‑1
GGTGTTGTACTCGCCTTGCTGAATCGCCTTGACCGCATGGCCCATGTCGCTGATCGGCTTGGCCAGGCTCAGGGCCAGGCTCAGGGCCAGGCGGCGTGCCAGCAAGAAGGTGAACAGCAGGGCGAACAACGCCAGGATTCCGGCCTTGA < 2:154839/149‑1
GTTGTACTCGCCTTGCTGAATCGCCTTGACCGCATGGCCCATGTCGCTGATCGGCTTGGCCAGGCTCAGGGCCAGGCTCAGGGCCAGGCGGCGTGCCAGCAAGAAG > 4:50817/1‑106
GTTGTACTCGCCTTGCTGAATCGCCTTGACCGCATGGCCCATGTCGCTGATCGGCTTGGCCAGGCTCAGGGCCAGGCTCAGGGCCAGGCGGCGTGCCAGCAAGAAG < 3:50817/106‑1
TTGTACTCGCCTTGCTGAATCGCCTTGACCGCATGGCCCATGTCGCTGATCGGCTTGGCCAGGCTCAGGGCCAGGCTCAGGGCCAGGCGGCGTGCCAGCAAGAAGGTGAACAGCAGGGCGAACAACGCCAGGATTCCGGCCTTGATCAC > 2:42529/1‑149
TTGTACTCGCCTTGCTGAATCGCCTTGACCGCATGGCCCATGTCGCTGATCGGCTTGGCCAGGCTCAGGGCCAGGCTCAGGGCCAGGCGGCGTGCCAGCAAGAAGGTGAACAGCAGGGCGAACAACGCCAGGATTCCGGCCTTGATCA < 1:312506/148‑1
GTACTCGCCTTGCTGAATCGCCTTGACCGCATGGCCCATGTCGCTGATCGGCTTGGCCAGGCTCAGGGCCAGGCTCAGGGCCAGGCGGCGTGCCAGCAAGAAGGTGAACAGCAGGGCGAACAACGCCAGGATTCCGGCCTTGATCACG < 2:187239/148‑1
GCCTTGCTGAATCGCCTTGACCGCATGGCCCATGTCGCTGATCGGCTTGGCCAGGCTCAGGGCCAGGCTCAGGGCCAGGCGGCGTGCCAGCAAGAAGGTGAACAGCAGGGCGAACAACGCCAGGATTCCGGCCTTGATCACGATTTCCT > 7:23225/1‑149
CCTTGCTGAATCGCCTTGACCGCATGGCCCATGTCGCTGATCGGCTTGGCCAGGCTCAGGGCCAGGCTCAGGGCCAGGCGGCGTGCCAGCAAGAAGGTGAACAGCAGGGCGAACAACGCCAGGATTCCGGCCTTGATCACGATTTCCTG < 5:272111/149‑1
CTTGCTGAATCGCCTTGACCGCATGGCCCATGTCGCTGATCGGCTTGGCCAGGCTCAGGGCCAGGCTCAGGGCCAGGCGGCGTGCCAGCAAGAAGGTGAACAGCAGGGCGAACAACGCCAGGATTCCGGCCTTGATCACGATTTCCTGC > 8:356656/1‑149
GCTGAATCGCCTTGACCGCATGGCCCATGTCGCTGATCGGCTTGGTCAGGCTCAGGGCCAGGCTCAGGGCCAGGCGGCGTGCCAGCAAGAAGGTGAACAGCAGGGCGAACAACGCCAGGATTCCGGCCTTGATCACGATTTCCTGCTG < 4:151218/148‑1
GCTGAATCGCCTTGACCGCATGGCCCATGTCGCTGATCGGCTTGGCCAGGCTCAGGGCCAGGCTCAGGGCCAGGCGGCGTGCCAGCAAGAAGGTGAACAGCAGGGCGAACAACGCCAGGATTCCGGCCTTGATCACGATTTCCTGCTG < 6:176858/148‑1
TCGCCTTGACCGCATGGCCCATGTCGCTGATCGGCTTGGCCAGGCTCAGGGCCAGGCTCAGGGCCAGGCGGCGTGCCAGCAAGAAGGTGAACAGCAGGGCGAACAACGCCAGGATTCCGGCCTTGATCACGATTTCCTGCTGGCGCTGA > 3:14986/1‑149
GCCTTGACCGCATGGCCCATGTCGCTGATCGGCTTGGCCAGGCTCAGGGCCAGGCTCAGGGCCAGGCGGCGTGCCAGCAAGAAGGTGAACAGCAGGGCGAACAACGCCAGGATTCCGGCCTTGATCACGATTTCCTGCTGGCGCTGAC < 2:97869/148‑1
CCTTGACCGCATGGCCCATGTCGCTGATCGGCTTGGCCAGGCTCAGGGCCAGGCTCAGGGCCAGGCGGCGTGCCAGCAAGAAGGTGAACAGCAGGGCGAACAACGCCAGGATTCCGGCCTTGATCACGATTTCCTGCTGGCGCTGACT > 6:205291/1‑148
CCTTGACCGCATGGCCCATGTCGCTGATCGGCTTGGCCAGGCTCAGGGCCAGGCTCAGGGCCAGGCGGCGTGCCAGCAAGAAGGTGAACAGCAGGGCGAACAACGCCAGGATTCCGGCCTTGATCACGATTTCCTGCTGGCGCTGACT > 6:299108/1‑148
GACCGCATGGCCCATGTCGCTGATCGGCTTGGCCAGGCTCAGGGCCAGGCTCTGGGCCAGGCGGCGTGCCTGCAAGAAGGTGAACAGCAGGTCGAACAACGCCAGGATTCCGGCCTTTATCACGATTTCCTGCTGGCGCTGACTGAAG < 7:9748/148‑1
ACCGCATGGCCCATGTCGCTGATCGGCTTGGCCAGGCTCAGGGCCAGGCTCAGGGCCAGGCGGCGTGCCAGCAAGAAGGTGAACAGCAGGGCGAACAACGCCAGGATTCCGGCCTTGATCACGATTTCCTGCTGGCGCTGACTGAAGGC > 8:236960/1‑149
CGCATGGCCCATGTCGCTGATCGGCTTGGTCAGGCTCAGGGCCAGGCTCAGGGCCAGGCGGCGTGCCAGCAAGAAGGTGAACAGCAGGGCGAACAACGCCAGGATTCCGGCCTTGATCACGATTTCCTGCTGGCGCTGACTGAAGGCGT < 4:151072/149‑1
GCATGGCCCATGTCGCTGATCGGCTTGGCCAGGCTCAGGGCCAGGCTCAGGGCCAGGCGGCGTGCCAGCAAGAAGGTGAACAGCAGGGCGAACAACGCCAGGATTCCGGCCTTGATCACGATTTCCTGCTGGCGCTGACTGAAGGCGT > 1:41060/1‑148
ATGGCCCATGTCGCTGATCGGCTTGGCCAGGCTCAGGGCCAGGCTCAGGGCCAGGCGGCGTGCCAGCAAGAAGGTGAACAGCAGGGCGAACAACGCCAGGATTCCGGCCTTGATCACGATTTCCTGCTGGCGCTGACTGAAGGCGTCAT > 4:250351/1‑149
TGGCCCATGTCGCTGATCGGCTTGGCCAGGCTCAGGGCCAGGCTCAGGGCCAGGCGGCGTGCCAGCAAGAAGGTGAACAGCAGGGCGAACAACGCCAGGATTCCGGCCTTGATCACGATTTCCTGCTGGCGCTGACTGAAGGCGTCATC < 6:135224/149‑1
GCCCATGTCGCTGATCGGCTTGGCCAGGCTCAGGGCCAGGCTCAGGGCCAGGCGGCGTGCCAGCAAGAAGGTGAACAGCAGGGCGAACAACGCCAGGATTCCGGCCTTGATCACGATTTCCTGCTGGCGCTGACTGAAGGCGTCATCG < 1:87772/148‑1
CCATGTCGCTGATCGGCTTGGCCAGGCTCAGGGCCAGGCTCAGGGCCAGGCGGCGTGCCAGCAAGAAGGTGAACAGCAGGGCGAACAACGCCAGGATTCCGGCCTTGATCACGATTTCCTGCTGGCGCTGACTGAAGGCGTCATCGGA > 3:167085/1‑148
TCGCTGATCGGCTTGGCCAGGCTCAGGGCCAGGCTCAGGGCCAGGCGACGTGCCAGCAAGAAGGTGAACAGCAGGGCGAACAACGCCAGGATTCCGGCCTTGATCACGATTTCCTGCTGGCGCTGACTGAAGGCGTCATCGGACATGC < 4:284557/148‑1
ATCGGCTTGGCCAGGCTCAGGGCCAGGCTCAGGGCCAGGCGGCGTGCCAGCAAGAAGGTGAACAGCAGGGCGAACAACGCCAGGATTCCGGCCTTGATCACGATTTCCTGCTGGCGCTGACTGAAGGCGTCATCGGACATGCCGACGAT > 7:211532/1‑149
GCTTGGCCAGGCTCAGGGCCAGGCTCAGGGCCAGGCGGCGTGCCAGCAAGAAGGTGAACAGCAGGGCGAACAACGCCAGGATTCCGGCCTTGATCACGATTTCCTGCTGGCGCTGACTGAAGGCGTCATCGGACATGCCGACGATCACG > 5:385066/1‑149
GGCTCAGGGCCAGGCTCAGGGCCAGGCGGCGTGCCAGCAAGAAGGTGAACAGCAGGGCGAACAACGCCAGGATTCCGGCCTTGATCACGATTTCCTGCTGGCGCTGACTGAAGGCGTCATCGGACATGCCGACGATCACGCGGCCCAGG < 5:162013/149‑1
CTCAGGGCCAGGCTCAGGGCCAGGCGGCGTGCCAGCAAGAAGGTGAACAGCAGGGCGAACAACGCCAGGATTCCGGCCTTGATCACGATTTCCTGCTGGCGCTGACTGAAGGCGTCATCGGACATGCCGACGATCACGCGGCCCAGG > 4:142714/1‑147
AGGGCCAGGCTCAGGGCCAGGCGGCGTGCCAGCAAGAAGGTGAACAGCAGGGCGAACAACGCCAGGATTCCGGCCTTGATCACGATTTCCTGCTGGCGCTGACTGAAGGCGTCATCGGACATGCCGACGATCACGCGGCCCAGGTAGTC < 5:200279/149‑1
AGGGCCAGGCTCAGGGCCAGGCGGCGTGCCAGCAAGAAGGTGAACAGCAGGGCGAACAACGCCAGGATTCCGGCCTTGATCACGATTTCCTGCTGGCGCTGACTGAAGGCGTCATCGGACATGCCGACGATCACGCGGCCCAGGTAG < 1:42529/147‑1
CAGGCTCAGGGCCAGGCGGCGTGCCAGCAAGAAGGTGAACAGCAGGGCGAACAACGCCAGGATTCCGGCCTTGATCACGATTTCCTGCTGGCGCTGACTGAAGGCGTCATCGGACATGCCGACGATCACGCGGCCCAGGTAGTCGTCAC < 6:340045/149‑1
CAGGCTCAGGGCCAGGCGGCGTGCCAGCAAGAAGGTGAACAGCAGGGCGAACAACGCCAGGATTCCGGCCTTGATCACGATTTCCTGCTGGCGCTGACTGAAGGCGTCATCGGACATGCCGACGATCACGCGGCCCAGGTAGTCGTCAC < 6:142705/149‑1
GCTCCAGGGCGCTGGCCAGGTTATTGATGTGGCGGGCCAAGTGGCCCAGCTCGCTGTCGTCGACGACCGGCAAGGGGGTGTTGTACTCGCCTTGCTGAATCGCCTTGACCGCATGGCCCATGTCGCTGATCGGCTTGGCCAGGCTCAGGGCCAGGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_002947_CJ‑RC/4715591‑4715436
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ggccaggcTCAGGGCCAGGCGGCGTGCCAGCAAGAAGGTGAACAGCAGGGCGAACAACGCCAGGATTCCGGCCTTGATCACGATTTCCTGCTGGCGCTGACTGAAGGCGTCATCGGACATGCCGACGATCACGCGGCCCAGGTAGTCGTCAC < NC_002947_CJ‑RC/4715447‑4715304
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
|---|
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |
GATK/CNVnator alignment
BRESEQ :: bam2aln output
CGACTACCTGGGCCGCGTGATCGTCGGCATGTCCGATGACGCCTTCAGTCAGCGCCAGCAGGAAATCGTGATCAAGGCCGGAATCCTGGCGTTGTTCGCCCTGCTGTTCACCTTCTTGCTGGCACGCC‑‑‑‑‑‑‑‑‑‑‑‑GCCTGGCCCT‑‑‑‑‑‑‑‑‑‑‑‑GAGCCTGGCCAAGCCGATCAGCGACATGGGCCATGCGGTCAAGGCGATTCAGCAAGGCGAGTACAACACCCCCTTGCCGGTCGTCGACGACAGCGAGCTGGGCCACTTGGCCCGCCACATCAATAACCTGGCCAGCGCCCTGGAGCAGGCCAGCGATG > NC_002947_CJ‑RC/4715308‑4715603
|
CGACTACCTGGGCCGCGTGATCGTCGGCATGTCCGATGACGCCTTCAGTCAGCGCCAGCAGGAAATCGTGATCAAGGCCGGAATCCTGGCGTTGTTCGCCCTGCTGTTCACCTTCTTGCTGGCACGCC‑‑‑‑‑‑‑‑‑‑‑‑GCCTGGCCCT‑‑‑‑‑‑‑‑‑‑‑‑GAGCCTGGCCctg > NB501016:282:H2V7GAFX2:3:11612:16571:9592/1‑148 (MQ=60)
ACTACCTGGGCCGCGTGATCGTCGGCATGTCCGATGACGCCTTCAGTCAGCGCCAGCAGGAAATCGTGATCAAGGCCGGAATCCTGGCGTTGTTCGCCCTGCTGTTCACCTTCTTGCTGGCACGCC‑‑‑‑‑‑‑‑‑‑‑‑GCCTGGCCCT‑‑‑‑‑‑‑‑‑‑‑‑GAGCCTGGCCctg > NB501016:282:H2V7GAFX2:1:11107:26240:18009/1‑146 (MQ=60)
ACCTGGGCCGCGTGATCGTCGGCATGTCCGATGACGCCTTCAGTCAGCGCCAGCAGGAAATCGTGATCAAGGCCGGAATCCTGGCGTTGTTCGCCCTGCTGTTCACCTTCTTGCTGGCACGCC‑‑‑‑‑‑‑‑‑‑‑‑GCCTGGCCCT‑‑‑‑‑‑‑‑‑‑‑‑GAGCCTGGCCctgagcct > NB501016:282:H2V7GAFX2:3:11606:7133:1651/1‑143 (MQ=60)
GCGTGATCGTCGGCATGTCCGATGACGCCTTCAGTCAGCGCCAGCAGGAAATCGTGATCAAGGCCGGAATCCTGGCGTTGTTCGCCCTGCTGTTCACCTTCTTGCTGGCACGCC‑‑‑‑‑‑‑‑‑‑‑‑GCCTGGCCCT‑‑‑‑‑‑‑‑‑‑‑‑GAGCCTGGCCctgagcctggccaagcc < NB501016:282:H2V7GAFX2:3:21611:3659:3686/151‑18 (MQ=60)
GATCGTCGGCATGTCCGATGACGCCTTCAGTCAGCGCCAGCAGGAAATCGTGATCAAGGCCGGAATCCTGGCGTTGTTCGCCCTGCTGTTCACCTTCTTGCTGGCACGCC‑‑‑‑‑‑‑‑‑‑‑‑GCCTGGCCCT‑‑‑‑‑‑‑‑‑‑‑‑GAGCCTGGCCctgagcctggccaagccgatc < NB501016:282:H2V7GAFX2:4:21402:3544:9487/151‑22 (MQ=60)
GTCCGATGACGCCTTCAGTCAGCGCCAGCAGGAAATCGTGATCAAGGCCGGAATCCTGGCGTTGTTCGCCCTGCTGTTCACCTTCTTGCTGGCACGCCGCCTGGCCCTGAGCCTGGCCCT‑‑‑‑‑‑‑‑‑‑‑‑GAGCCTGGCCAAGCCGATCAGCGACATGGG < NB501016:282:H2V7GAFX2:2:11307:22363:3139/150‑1 (MQ=60)
CCGATGACGCCTTCAGTCAGCGCCAGCAGGAAATCGTGATCAAGGCCGGAATCCTGGCGTTGTTCGCCCTGCTGTTCACCTTCTTGCTGGCACGCCGCCTGGCCCTGAGCCTGGCCCT‑‑‑‑‑‑‑‑‑‑‑‑GAGCCTGGCCAAGCCGATCAGCGACATGGGCC > NB501016:282:H2V7GAFX2:1:11203:12535:13144/1‑150 (MQ=60)
GACGCCTTCAGTCAGCGCCAGCAGGAAATCGTGATCAAGGCCGGAATCCTGGCGTTGTTCGCCCTGCTGTTCACCTTCTTGCTGGCACGCCGCCTGGCCCTGAGCCTGGCCCT‑‑‑‑‑‑‑‑‑‑‑‑GAGCCTGGCCAAGCCGATCAGCGACATGGGCCATGCG < NB501016:282:H2V7GAFX2:1:11107:13821:13191/150‑1 (MQ=60)
CCTTCAGTCAGCGCCAGCAGGAAATCGTGATAAAGGCCGGAATCCTGGCGTTGTTCGACCTGCTGTTCACCTTCTTGCAGGCACGCCGCCTGGCCCAGAGCCTGGCCCT‑‑‑‑‑‑‑‑‑‑‑‑GAGCCTGGCCAAGCCGATCAGCGACATGGGCCATGCGGTCA > NB501016:282:H2V7GAFX2:4:11402:21137:14994/1‑150 (MQ=60)
GTCAGCGCCAGCAGGAAATCGTGATCAAGGCCGGAATCCTGGCGTTGTTCGCCCTGCTGTTCACCTTCTTGCTGGCACGCCGCCTGGCCCTGAGCCTGGCCCT‑‑‑‑‑‑‑‑‑‑‑‑GAGCCTGGCCAAGCCGATCAGCGACATGGGCCATGCGGTCAAGGCGAT < NB501016:282:H2V7GAFX2:2:11103:12010:16653/151‑1 (MQ=60)
ggtgaacagcagggcgaacaacgccaggattccggccttgatcacgatttCCTGCTGTTCACCTTCTTGCTGGCACGCCGCCTGGCCCTGAGCCTGGCCCT‑‑‑‑‑‑‑‑‑‑‑‑GAGCCTGGCCAAGCCGATCAGCGACATGGGCCATGCGGTCAAGGCGATTC > NB501016:282:H2V7GAFX2:3:21509:18831:11204/51‑151 (MQ=60)
GCAGGAAATCGTGATCAAGGCCGGAATCCTGGCGTTGTTCGCCCTGCTGTTCACCTTCTTGCTGGCACGCCGCCTGGCCCTGAGCCTGGCCCT‑‑‑‑‑‑‑‑‑‑‑‑GAGCCTGGCCAAGCCGATCAGCGACATGGGCCATGCGGTCAAGGCGATTCAGCAAGGC > NB501016:282:H2V7GAFX2:3:21502:2447:17705/1‑151 (MQ=60)
CAGGAAATCGTGATCAAGGCCGGAATCCTGGCGTTGTTCGCCCTGCTGTTCACCTTCTTGCTGGCACGCCGCCTGGCCCTGAGCCTGGCCCT‑‑‑‑‑‑‑‑‑‑‑‑GAGCCTGGCCAAGCCGATCAGCGACATGGGCCATGCGGTCAAGGCGATTCAGCAAGGCG < NB501016:282:H2V7GAFX2:4:11405:9846:2637/151‑1 (MQ=60)
GTGATCAAGGCCGGAATCCTGGCGTTGTTCGCCCTGCTGTTCACCTTCTTGCTGGCACGCC‑‑‑‑‑‑‑‑‑‑‑‑GCCTGGCCCTGAGCCTGGCCCAGAGCCTGGCCAAGCCGATCAGCGACATGGGCCATGCGGTCAAGGCGATTCAGCAAGGCGAGTACAAC > NB501016:282:H2V7GAFX2:1:21208:16051:11626/1‑150 (MQ=60)
CCTGGCGTTGTTCGCCCTGCTGTTCACCTTCTTGCTGGCACGCCGCCTGGCCCTGAGCCTGGCCCT‑‑‑‑‑‑‑‑‑‑‑‑GAGCCTGGCCAAGCCGATCAGCGACATGGGCCATGCGGTCAAGGCGATTCAGCAAGGCGAGTACAACACCCCCTTGCCGGTCGTC < NB501016:282:H2V7GAFX2:3:21603:13917:5326/151‑1 (MQ=60)
GGCGTTGTTCGCCCTGCTGTTCACCTTCTTGCTGGCACGCCGCCTGGCCCTGAGCCTGGCCCT‑‑‑‑‑‑‑‑‑‑‑‑GAGCCTGGCCAAGCCGATCAGCGACATGGGCCATGCGGTCAAGGCGATTCAGCAAGGCGAGTACAACACCCCCTTGCCGGTCGTCGA < NB501016:282:H2V7GAFX2:1:11309:12589:12547/150‑1 (MQ=60)
GCGTTGTTCGCCCTGCTGTTCACCTTCTTGCTGGCACGCCGCCTGGCCCTGAGCCTGGCCCT‑‑‑‑‑‑‑‑‑‑‑‑GAGCCTGGCCAAGCCGATCAGCGACATGGGCCATGCGGTCAAGGCGATTCAGCAAGGCGAGTACAACACCCCCTTGCCGGTCGTCGACG < NB501016:282:H2V7GAFX2:4:11405:19157:8645/151‑1 (MQ=60)
CGTTGTTCGCCCTGCTGTTCACCTTCTTGCTGGCACGCCGCCTGGCCCTGAGCCTGGCCCT‑‑‑‑‑‑‑‑‑‑‑‑GAGCCTGGCCAAGCCGATCAGCGACATGGGCCATGCGGTCAAGGCGATTCAGCAAGGCGAGTACAACACCCCCTTGCCGGTCGTCGACGA < NB501016:282:H2V7GAFX2:2:21206:7690:18443/151‑1 (MQ=60)
GTTCGCCCTGCTGTTCACCTTCTTGCTGGCACGCCGCCTGGCCCTGAGCCTGGCCCT‑‑‑‑‑‑‑‑‑‑‑‑GAGCCTGGCCAAGCCGATCAGCGACATGGGCCATGCGGTCAAGGCGATTCAGCAAGGCGAGTACAACACCCCCTTGCCGGTCGTCGACGACAG < NB501016:282:H2V7GAFX2:2:21111:2483:2502/150‑1 (MQ=60)
GTTCGCCCTGCTGTTCACCTTCTTGCTGGCACGCCGCCTGGCCCTGAGCCTGGCCCT‑‑‑‑‑‑‑‑‑‑‑‑GAGCCTGGCCAAGCCGATCAGCGACATGGGCCATGCGGGCAAGGCGATTCAGCAAGGCGAGTACAACACCCCCTTGCCGGGCGTCGACGACAG < NB501016:282:H2V7GAFX2:3:11510:16329:12146/150‑1 (MQ=60)
CTGTTCACCTTCTTGCTGGCACGCCGCCTGGCCCTGAGCCTGGCCCT‑‑‑‑‑‑‑‑‑‑‑‑GAGCCTGGCCAAGCCGATCAGCGACATGGGCCATGCGGTCAAGGCGATTCAGCAAGGCGAGTACAACACCCCCTTGCCGGTCGTCGACGACAGCGAGCTGGGCC > NB501016:282:H2V7GAFX2:1:11107:8725:6886/1‑151 (MQ=60)
GTTCACCTTCTTGCTGGCACGCCGCCTGGCCCTGAGCCTGGCCCT‑‑‑‑‑‑‑‑‑‑‑‑GAGCCTGGCCAAGCCGATCAGCGACATGGGCCATGCGGTCAAGGCGATTCAGCAAGGCGAGTACAACACCCCCTTGCCGGTCGTCGACGACAGCGAGCTGGGCC < NB501016:282:H2V7GAFX2:3:21607:8692:18373/149‑1 (MQ=60)
CACCTTCTTGCTGGCACGCCGCCTGGCCCTGAGCCTGGCCCT‑‑‑‑‑‑‑‑‑‑‑‑GAGCCTGGCCAAGCCGATCAGCGACATGGGCCATGCGGTCAAGGCGATTCAGCAAGGCGAGTACAACACCCCCTTGCCGGTCGTCGACGACAGCGAGCTGGGCCACTTG < NB501016:282:H2V7GAFX2:3:11602:15520:18160/151‑1 (MQ=60)
acttcttgctggcacgccgcctggccctgaGCCTGGCCCT‑‑‑‑‑‑‑‑‑‑‑‑GAGCCTGGCCAAGCCGATCAGCGACATGGGCCATGCGGTCAAGGCGATTCAGCAAGGCGAGTACAACACACCCTTGCCGGTCGTCGACGACAGCGAGCTCGGCCACTTGGC > NB501016:282:H2V7GAFX2:1:11304:19193:2098/31‑151 (MQ=60)
CCTTCTTGCTGGCACGCCGCCTGGCCCTGAGCCTGGCCCT‑‑‑‑‑‑‑‑‑‑‑‑GAGCCTGGCCAAGCCGATCAGCGACATGGGCCATGCGGTCAAGGCGATTCAGCAAGGCGAGTACAACA > NB501016:282:H2V7GAFX2:2:11110:12847:9393/1‑108 (MQ=60)
tgctggcacgccgcctggccctgaGCCTGGCCCT‑‑‑‑‑‑‑‑‑‑‑‑GAGCCTGGCCAAGCCGATCAGCGACATGGGCCATGCGGTCAAGGCGATTCAGCAAGGCGAGTACAACACCCCCTTGCCGGTCGTCGACGACAGCGAGCTGGGCCACTTGGCCCG < NB501016:282:H2V7GAFX2:3:21606:7835:17422/124‑1 (MQ=60)
ggcacgccgcctggccctgaGCCTGGCCCT‑‑‑‑‑‑‑‑‑‑‑‑GAGCCTGGCCAAGCCGATCAGCGACATGGGCCATGCGGTCAAGGCGATTCAGCAAGGCGAGTACAACACCCCCTTGCCGGTCGTCGACGACAGCGAGCTGGGCCACTTGGCCCGCCACATC > NB501016:282:H2V7GAFX2:1:11211:10816:8128/21‑151 (MQ=60)
cacgccgccttgccctgaGCCTGGCCCT‑‑‑‑‑‑‑‑‑‑‑‑GAGCCTGGCCAAGCCGATCAGCTACATGGGCCATGCGGTCAAGGCGATTCAGCAAGGCGAGTACAACACCCCCTTGCCGGTCGTCGACGACAGCGAGCTGGGCCACTTGGCCCGCCACATCAA < NB501016:282:H2V7GAFX2:2:11307:6233:15078/133‑1 (MQ=60)
ggccctgaGCCTGGCCCT‑‑‑‑‑‑‑‑‑‑‑‑GAGCCTGGCCAAGCCGATCAGCGACATGGGCCATGCGGTCAAGGCGATTCAGCAAGGCGAGTACAACACCCCCTTGCCGGTCGTCGACGACAGCGAGCTGGGCCACTTGGCCCGCCACATCAATAACCTGG < NB501016:282:H2V7GAFX2:3:11601:14336:13729/141‑1 (MQ=60)
GCCCT‑‑‑‑‑‑‑‑‑‑‑‑GAGCCTGGCCAAGCCGATCAGCGACATGGGCCATGCGGTCAAGGCGATTCAGCAAGGCGAGTACAACACCCCATTGCCGGTCGTCGACGACAGCGAGCTGGGCCACTTGGCCCGCGACATCAATAACCTGGCCAGCGCCCTGGAGC > NB501016:282:H2V7GAFX2:3:21508:19769:17159/1‑151 (MQ=60)
GCCAAGCCGATCAGCGACATGGGCCATGCGGTCAAGGCGATTCAGCAAGGCGAGTACAACACCCCCTTGCCGGTCGTCGACGACAGCGAGCTGGGCCACTTGGCCCGCCACATCAATAACCTGGCCAGCGCCCTGGAGCAGGCCAGCGATG < NB501016:282:H2V7GAFX2:3:11608:24198:10335/151‑1 (MQ=60)
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CGACTACCTGGGCCGCGTGATCGTCGGCATGTCCGATGACGCCTTCAGTCAGCGCCAGCAGGAAATCGTGATCAAGGCCGGAATCCTGGCGTTGTTCGCCCTGCTGTTCACCTTCTTGCTGGCACGCC‑‑‑‑‑‑‑‑‑‑‑‑GCCTGGCCCT‑‑‑‑‑‑‑‑‑‑‑‑GAGCCTGGCCAAGCCGATCAGCGACATGGGCCATGCGGTCAAGGCGATTCAGCAAGGCGAGTACAACACCCCCTTGCCGGTCGTCGACGACAGCGAGCTGGGCCACTTGGCCCGCCACATCAATAACCTGGCCAGCGCCCTGGAGCAGGCCAGCGATG > NC_002947_CJ‑RC/4715308‑4715603
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| Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 0 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
