Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A2 F24 I1 R1
|
60 |
68.7 |
2919236 |
98.6% |
2878366 |
146.9 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| RA |
NC_002947_CJ‑RC |
2,900,795 |
C→T |
intergenic (‑166/‑124) |
PP_2553 ← / → quiC |
MFS transporter/3‑dehydroshikimate dehydratase |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NC_002947_CJ‑RC | 2,900,795 | 0 | C | T | 100.0%
| 251.4
/ NA
| 74 | intergenic (‑166/‑124) | PP_2553/quiC | MFS transporter/3‑dehydroshikimate dehydratase |
| Reads supporting (aligned to +/- strand): ref base C (0/0); new base T (46/28); total (46/28) |
GTTGTTTGCGCAGGTTCCGCCAGAGGTTATGCCAAGGCAGGAGGCAACGGTCGGTGTGCCTGCGTCTGTGGTCCATGTTGACCACGGGCCCGCGGTCTAGCAATTCGCTAAAACGGGTTTTGTGCGATAATCGAACGCAAAACTAACCATTCCGTACAAAGAGATTGAAGCGACGACTTTACCTGCGAATAATCGATCGTGCCATAAACTGTGACAGGGGTTGTTTGCCCGAATGGCACCGTATTCCTCCAACAACAAGGAACTCCCGCCATGCAGCGTTCGATCGCTACCG > NC_002947_CJ‑RC/2900649‑2900940
|
gttgttTGCGCAGGTTCCGCCAGAGGTTATGCCAAGGCAGGAGGCAACGGTCGGTGTGCCTGCGTCTGTGGTCCATGTTGACCACGGGCCCGCGGTCTAGCAATTCGCTAAAACGGGTTTTGTGCGATAATCGAACGCAAAACTAATCa > 7:370051/1‑149 (MQ=255)
ttgttTGCACATTTTCACCCAGAGGTTATGCCAAGGCAGGATGCAACAGTCGGAGTGCCAGCATCTGTGGTCCATGTTGACCACGGGCCCGCCAACAAGCAATTAGCAAAACCGGAATTTGTGCCATAATCGAAAGCAAAACTAATCAt > 4:245356/1‑149 (MQ=255)
gttTGCGCAGGTTCCGCCAGAGGTTATGCCAAGGCAGGAGGCAACGGTCGGTGTGCCTGCGTCTGTGGTCCATGTTGACCACGGGCCCGCGGTCTAGCAATTCGCTAAAACGGGTTTTGTGCGATAATCGAACGCAAAACTAATCATTc > 5:353117/1‑149 (MQ=255)
gcgcAGGTTCCGCCAGAGGTTATGCCAAGGCAGGAGGCAACGGTCGGTGTGCCTGCGTCTGTGGTCCATGTTGACCACGGGCCCGCGGTCTAGCAATTCGCTAAAACGGGTTTTGTGCGATAATCGAACGCAAAACTAATCATTCCGt < 5:288697/148‑1 (MQ=255)
ttCCGCCTGAGGTTATGCCAATGCAGGAGGCAACGGTCGGTGTGCCTGCGTCTGTGGTCCATGTTGACCACGGGCCCGCGGTCTAGCAATTCGCTAAAACGGGTTTTGTGCGATAATCGAACGCAAAACTAATCATTCCGTACAAagag < 1:224890/149‑1 (MQ=255)
ttCCGCCAGAGGTTATGCCAAGGCAGGAGGCAACGGTCGGTGTGCCTGCGTCTGTGGTCCATGTTGACCACGGGCCCGCGGTCTAGCAATTCGCTAAAACGGGTTTTGTGCGATAATCGAACGCAAAACTAATCATTCCGTACaaa > 7:243970/1‑146 (MQ=255)
ccGCCAGAGGTTATGCCAAGGCAGGAGGCAACGGTCGGTGTGCCTGCGTCTGTGGTCCATGTTGACCACGGGCCCGCGGTCTAGCAATTCGCTAAAACGGGTTTTGTGCGATAATCGAACGCAAAACTAATCATTCCGTACAAAgaga < 6:106558/148‑1 (MQ=255)
gagGTTATGCCAAGGCAGGAGGCAACGGTCGGTGTGCCTGCGTCTGTGGTCCATGTTGACCACGGGCCCGCGGTCTAGCAATTCGCTAAAACGGGTTTTGTGCGATAATCGAACGCAAAACTAATCATTCCGTACAAAGAGATTGAAGc > 5:349269/1‑149 (MQ=255)
cAAGGCAGGAGGCAACGGTCGGTGTGCCTGCGTCTGTGGTCCATGTTGACCACGGGCCCGCGGTCTAGCAATTCGCTAAAACGGGTTTTGTGCGATAATCGAACGCAAAACTAATCATTCCGTACAAAGAGATTGAAGCGACGACTTTa > 5:133637/1‑149 (MQ=255)
cAAGGCAGGAGGCAACGGTCGGTGTGCCTGCGTCTGTGGTCCATGTTGACCACGGGCCCGCGGTCTAGCAATTCGCTAAAACGGGTTTTGTGCGATAATCGAACGCAAAACTAATCATTCCGTACAAAGAGATTGAAGCGACGACTTTa > 5:139411/1‑149 (MQ=255)
gCAACGGGCGGTGTGCCTGCGTCTGTGGTCCATGTTGACCACGGGCCCGCGGTCTAGCAATTCGCTAAAACGGGTTTTGTGCGATAATCGAACGCAAAACTAATCATTCCGTACAAAGAGATTGAAGCGACGACTTTACCTGCGaataa < 4:45544/149‑1 (MQ=255)
aCGGTCGGTGTGCCTGCGTCTGTGGTCCATGTTGACCACGGGCCCGCGGTCTAGCAATTCGCTAAAACGGGTTTTGTGCGATAATCGAACGCAAAACTAATCATTCCGTACAAAGAGATTGAAGCGACGACTTTACCTGCGAATAatcg < 6:295511/149‑1 (MQ=255)
cggtcggtGTGCCTGCGTCTGTGGTCCATGTTGACCACGGGCCCGCGGTCTAGCAATTCGCTAAAACGGGTTTTGTGCGATAATCGAACGCAAAACTAATCATTCCGTACAAAGAGATTGAAGCGACGACTTTACCTGCGAATAatcga < 2:2906/149‑1 (MQ=255)
gtcggtGTGCCTGCGTCTGTGGTCCATGTTGACCCCGGGCCCGCGGTCTAGCAATTCGCTAAACGGGGTTTTGTGCGATAATCGAACCAAAAACTAATCATTCCGAAAAAAGAGATTGAAGCGACGACTTTACCTGCGAATAatcgatc < 1:155494/149‑1 (MQ=255)
gtcggtGTGCCTGCGTCTGTGGTCCATGTTGACCACGGGCCCGCGGTCTAGCAATTCGCTAAAACGGGTTTTGTGCGATAATCGAACGCAAAACTAATCATTCCGTACAAAGAGATTGAAGCGACGACTTTACCTGCGAATAatcgatc < 6:53986/149‑1 (MQ=255)
ccTGCGTCTGTGGTCCATGTTGACCACGGGCCCGCGGTCTAGCAATTCGCTAAAACGGGTTTTGTGCGATAATCGAACGCAAAACTAATCATTCCGTACAAAGAGATTGAAGCGACGACTTTACCTGCGAATAATCGATCGTGCCATa > 8:362454/1‑148 (MQ=255)
cTGCGTCTGTGGTCCATGTTGACCACGGGCCCGCGGTCTAGCAATTCGCTAAAACGGGTTTTGTGCGATAATCGAACGCAAAACTAATCATTCCGTACAAAGAGATTGAAGCGACGACTTTACCTGCGAATAATCGATCGTGCCATaaa > 5:255752/1‑149 (MQ=255)
cTGCGTCTGTGGTCCATGTTGACCACGGGCCCGCGGTCTAGCAATTCGCTAAAACGGGTTTTGTGCGATAATCGAACGCAAAACTAATCATTCCGTACAAAGAGATTGAAGCGACGACTTTACCTGCGAATAATCGATCGTGCCATaaa > 4:176120/1‑149 (MQ=255)
cTGCGTCTGTGGTCCATGTTGACCACGGGCCCGCGGTCTAGCAATTCGCTAAAACGGGTTTTGTGCGATAATCGAACGCAAAACTAATCATTCCGTACAAAGAGATTGAAGCGACGACTTTACCTGCGAATAATCAATCGTGCCATaa > 1:50171/1‑148 (MQ=255)
tGCGTCTGTGGTCCATGTTGACCACGGGCCCGCGGTCTAGCAATTCGCTAAAACGGGTTTTGTGCGATAATCGAACGCAAAACTAATCATTCCGTACAAAGAGATTGAAGCGACGACTTTACCTGCGAATAATCGATCGTGCCATAAAc > 1:192548/1‑149 (MQ=255)
gtgGTCCATGTTGACCACGGGCCCGCGGTCTAGCAATTCGCTAAAACGGGTTTTGTGCGATAATCGAACGCAAAACTAATCATTCCGTACAAAGAGATTGAAGCGACGACTTTACCTGCGAATAATCGATCGTGCCATAAACTGTGa > 3:23737/1‑147 (MQ=255)
tgGTCCATGTTGACCCCGGGCCCGCGGTCTAGCAATTCGCTAAAACGGGTTTTGTGCGATAATCGAACGCAAAACTAATCATTCCGTACAAAGAGATTGAAGCGACGACTTTACCTGCGAATAATCGATCGTGCCATAAACTGTGACAg > 5:30370/1‑149 (MQ=255)
gTCCATGTTGACCACGGGCCCGCGGTCTAGCAATTCGCTAAAACGGGTTTTGTGCGATAATCGAACGCAAAACTAATCATTCCGTACAAAGAGATTGAAGCGACGACTTTACCTGCGAATAATCGATCGTGCCATAAACTGTGACAggg > 8:318754/1‑149 (MQ=255)
gTCCATGTTGACCACGGGCCCGCGGTCTAGCAATTCGCTAAAACGGGTTTTGTGCGATAATCGAACGCAAAACTAATCATTCCGTACAAAGAGATTGAAGCGACGACTTTACCTGCGAATAATCGATCGTGCCATAAACTGTGACAgg < 8:16345/148‑1 (MQ=255)
tCCATGTTGACCACGGGCCCGCGGTCTAGCAATTCGCTAAAACGGGTTTTGTGCGATAATCGAACGCAAAACTAATCATTCCGTACAAAGAGATTGAAGCGACGACTTTACCTGCGAATAATCGATCGTGCCATAAACTGTGACAgggg < 5:169060/149‑1 (MQ=255)
cATGTTGACCACGGGCCCGCGGTCTAGCAATTCGCTAAAACGGGTTTTGTGCGATAATCGAACGCAAAACTAATCATTCCGTACAAAGAGATTGAAGCGACGACTTTACCTGCGAATAATCGATCGTGCCATAAACTGTGACAGGGgtt < 7:62502/149‑1 (MQ=255)
cATGTTGACCACGGGCCCGCGGTCTAGCAATTCGCTAAAACGGGTTTTGTGCGATAATCGAACGCAAAACTAATCATTCCGTACAAAGAGATTGAAGCGACGACTTTACCTGCGAATAATCGATCGTGCCATAAACTGTGACAGGGgtt > 2:342503/1‑149 (MQ=255)
aTGTTGACCACGGGCCCGCGGTCTAGCAATTCGCTAAAACGGGTTTTGTGCGATAATCGAACGCAAAACTAATCATTCCGTACAAAGAGATTGAAGCGACGACTTTACCTGCGAATAATCGATCGTg > 1:320798/1‑127 (MQ=255)
aTGTTGACCACGGGCCCGCGGTCTAGCAATTCGATAAAACGGGTTTTGTGCGATAATCGAACGCAAAACTAATCATTCCGTACAAAGAGATTGAAGCGACGACTTTACCTGCGAATAATCGATCGTg < 2:320798/127‑1 (MQ=255)
gTTGACCACGGGCCCGCGGTCTAGCAATTCGCTAAAACGGGTTTTGTGCGATAATCGAACGCAAAACTAATCATTCCGTACAAAGAGATTGAAGCGACGACTTTACCTGCGAATAATCGATCGTGCCATAAACTGTGACAGGGgttgtt > 8:35613/1‑149 (MQ=255)
ttGACCACGGGCCCGCGGTCTAGCAATTCGCTAAAACGGGTTTTGTGCGATAATCGAACGCAAAACTAATCATTCCGTACAAAGAGATTGAAGCGACGACCTTACCTGCGAATAATCGATCGTGCCATAAACTGTGACAGGGGTTGttt < 8:121190/149‑1 (MQ=255)
ctGACCACGGGCCCGCGGTCTAGCAATTCGCTAAACCCGGTTTTGCGCGATACTCGAACGCAAAACTAATCATTCCGTACAAAGAGATTGAAGCGACGACCTTACCTGCGAATAATCGATCGTGCCATAAACTGTGACAGGGGTTGttt < 6:202365/148‑1 (MQ=255)
gACCACGGGCCCGCGGTCTAGCAATTCGCTAAAACGGGTTTTGTGCGATAATCGAACGCAAAACTAATCATTCCGTACAAAGAGATTGAAGCGACGACTTTACCTGCGAATAATCGATCGTGCCATAAACTGTGACAGGGGTTGTTTGc > 5:81686/1‑149 (MQ=255)
aCCACGGGCCCGCGGTCTAGCAATTCGCTAAAACGGGTTTTGTGCGATAATCGAACGCAAAACTAATCATTCCGTACAAAGAGATTGAAGCGACGACTTTACCTGCGAATAATCGATCGTGCCATAAACTGTGACAGGGGTTGTTTGcc > 4:222775/1‑149 (MQ=255)
aCCACGGGCCCGCGGTCTAGCAATTCGCTAAAACGGGTTTTGTGCGATAATCGAACGCAAAACTAATCATTCCGTACAAAGAGATTGAAGCGACGACTTTACCTGCGAATAATCGATCGTGCCATAAACTGTGACAGGGGTTGTTTGc < 6:81686/148‑1 (MQ=255)
ggCCCGCGGTCTAGCAATTCGCTAAAACGGGTTTTGTGCGATAATCGAACGCAAAACTAATCATTCCGTACAAAGAGATTGAAGCGACGACTTTACCTGCGAATAATCAATCGTGCCATAAACTGTGACAGGGGTTGTTTGCCCGAATg < 2:50171/149‑1 (MQ=255)
gCCCGCGGTCTAGCAATTCGCTAAAACGGGTTTTGTGCGATAATCGAACGCAAAACTAATCATTCCGTACAAAGAGATTGAAGCGACGACTTTACCTGCGAATAATCGATCGTGCCATAAACTGTGACAGGGGTTGTTTGCCCGAATgg > 4:80290/1‑149 (MQ=255)
accGCGGTCTAGCAATTCGCTAAAACGGGTTTTGTTCGATAATAGAACGCAAAACTAATCATTCCGTACAAAGAGATTGAAGCGACGACTTTACATGCGAATAATCGATCGTGCCATAAACTGTGACAGGGGTTGTTTGACCGAATgg > 3:55223/2‑148 (MQ=255)
ccGCGGTCTAGCAATTCGCTAAAACGGGTTTTGTGCGATAATCGAACGCAAAACTAATCATTCCGTACAAAGAGATTGAAGCGACGACTTTACCTGCGAATAATCGATCGTGCCATAAACTGTGACAGGGGTTGTTTGCCCGAATGGCa > 6:169547/1‑149 (MQ=255)
ccGCGGTCTAGCAATTCGCTAAAACGGGTTTTGTGCGATAATCGAACGCAAAACTAATCATTCCGTACAAAGAGATTGAAGCGACGACTTTACCTGCGAATAATCGATCGTGCCATAAACTGTGACAGGGGTTGTTTGCCCGAATGGCa > 7:252789/1‑149 (MQ=255)
tAGCAATTCGCTAAAACGGGTTTTGTGCGATAATCGAACGCAAAACTAATCATTCCGTACAAAGAGATTGAAGCGACGACTTTACCTGCGAATAATCGATCGTGCCATAAACTGTGACAGGGGTTGTTTGCCCGAATGGCACCGTATtc > 3:57474/1‑149 (MQ=255)
gCAATTCGCTAAAACGGGTTTTGTGCGATAATCGAACGCAAAACTAATCATTCCGTACAAAGAGATTGAAGCGACGACTTTACCTGCGAATAATCGATCGTGCCATAAACTGTGACAGGGGTTGTTTGCCCGAATGGCACCGTATtcct > 2:1634/1‑149 (MQ=255)
gCAATTCGCTAAAACGGGTTTTGTGCGATAATCGAACGCAAAACTAATCATTCCGTACAAAGAGATTGAAGCGACGACTTTACCTGCGAATAATCGATCGTGCCATAAACTGTGACAGGGGTTGTTTGCCCGAATGGCACCGTATtcct > 8:169463/1‑149 (MQ=255)
cAATTCGCTAAAACGGGTTTTGTGCGATAATCGAACGCAAAACTAATCATTCCGTACAAAGAGATTGAAGCGACGACTTTACCTGCGAATAATCGATCGTGCCATAAACTGTGACAGGGGTTGTTTGCCCGAATGGCACAGTATtcctc < 7:318754/149‑1 (MQ=255)
aaTTCGCTAAAACGGGTTTTGTGCGATAATCGAACGCAAAACTAATCATTCCGTACAAAGAGATTGAAGCGACGACTTTACCTGCGAATAATCGATCGTGCCATAAACTGTGACAGGGGTTGTTTGCCCGAATGGCACCGTATtcctcc < 6:353117/149‑1 (MQ=255)
aaTTCGCTAAAACGGGTTTTGTGCGATAATCGAACGCAAAACTAATCATTCCGTACAAAGAGATTGAAGCGACGACTTTACCTGCGAATAATCGATCGTGCCATAAACTGTGACAGGGGTTGTTTGCCCGAATGGCACCGTATtcctc > 8:263145/1‑148 (MQ=255)
ttCGCTAAAACGGGTTTTGTGCGATAATCGAACGCAAAACTAATCATTCCGTACAAAGAGATTGAAGCGACGACTTTACCTGCGAATAATCGATCGTGCCATAAACTGTGACAGGGGTTGTTTGCCCGAATGGCACCGTATTCCTCcaa > 7:306408/1‑149 (MQ=255)
ttCGCTAAAACGGGTTTTGTGCGATAATCGAACGCAAAACTAATCATTCCGTACAAAGAGATTGAAGCGACGACTTTACCTGCGAATAATCGATCGTGCCATAAACTGTGACAGGGGTTGTTTGCCCGAATGGCACCGTATTCCTCcaa > 7:289150/1‑149 (MQ=255)
cTAAAACGGGTTTTGTGCGATAATCGAACGCAAAACTAATCATTCCGTACAAAGAGATTGAAGCGACGACTTTACCTGCGAATAATCGATCGTGCCATAAACTGTGACAGGGGTTGTTTGCCCGAATGGCACCGTATTCCTCcaacaa > 4:183776/1‑148 (MQ=255)
cTAAAACGGGTTTTGTGCGATAATCGAACGCAAAACTAATCATTCCGTACAAAGAGATTGAAGCGACGACTTTACCTGCGAATAATCGATCGTGCCATAAACTGTGACAGGGGTTGTTTGCCCGAATGGCACCGTATTCCTCcaac > 1:248126/1‑146 (MQ=255)
cTAAAACGGGTTTTGTGCGATAATCGAACGCAAAACTAATCATTCCGTACAAAGAGATTGAAGCGACGACTTTACCTGCGAATAATCGATCGTGCCATAAACTGTGACAGGGGTTGTTTGCCCGAATGGCACCGTATTCCTCcaac < 2:248126/146‑1 (MQ=255)
aaaaCGGGTTTTGTGCGATAATCGAACGCAAAACTAATCATTCCGTACAAAGAGATTGAAGCGACGACTTTACCTGCGAATAATCGATCGTGCCATAAACTGTGACAGGGGTTGTTTGCCCGAATGGCACCGTATTCCTCcaacaac > 8:156368/1‑147 (MQ=255)
aaaCGGGTTTTGTGCGATAATCGAACGCAAAACTAATCATTCCGTACAAAGAGATTGAAGCGACGACTTTACCTGCGAATAATCGATCGTGCCATAAACTGTGACAGGGGTTGTTTGCCCGAATGGCACCGTATTCCTCcaacaacaa < 1:1634/148‑1 (MQ=255)
aaaCGGGTTTTGTGCGATAATCGAACGCAAAACTAATCATTCCGTACAAAGAGATTGAAGCGACGACTTTACCTGCGAATAATCGATCGTGCCATAAACTGTGACAGGGGTTGTTTGCCCGAATGGCACCGTATTCCTCCAACAACAAg < 6:6954/149‑1 (MQ=255)
ttttGTGCGATAATCGAACGCAAAACTAATCATTCCGTACAAAGAGATTGAAGCGACGACTTTACCTGCGAATAATCGATCGTGCCATAAACTGTGACAGGGGTTGTTTGCCCGAATGGCACCGTATTCCTCCAACAACAAGGAACTcc > 7:215521/1‑149 (MQ=255)
tgCGATAATCGAACGCAAAACTAATCATTCCGTACAAAGAGATTGAAGCGACGACTTTACCTGCGAATAATCGATCGTGCCATAAACTGTGACAGGGGTTGTTTGCCCGAATGGCACCGTATTCCTCCAACAACAAGGAACTCCCGcc < 7:362454/148‑1 (MQ=255)
cGATAATCGAACGCAAAACTAATCATTCCGTACAAAGAGATTGAAGCGACGACTTTACCTGCGAATAATCGATCGTGCCATAAACTGTGACAGGGGTTGTTTGCCCGAATGGCACCGTATTCCTCCAACAACAAGGAACTCCCGCCATg > 8:77247/1‑149 (MQ=255)
aaTCGAACGCAAAACTAATCATTCCGTACAAAGAGATTGAAGCGACGACTTTACCTGCGAATAATCGATCGTGCCATAAACTGTGACAGGGGTTGTTTGCCCGAATGGCACCGTAt > 8:169887/1‑116 (MQ=255)
aaTCGAACGCAAAACTAATCATTCCGTACAAAGAGATTGAAGCGACGACTTTACCTGCGAATAATCGATCGTGCCATAAACTGTGACAGGGGTTGTTTGCCCGAATGGCACCGTAt < 7:169887/116‑1 (MQ=255)
aaTCGAACGCAAAACTAATCATTCCGTACAAAGAGATTGAAGCGACGACTTTACCTGCGAATAATCGATCGTGCCATAAACTGTGACAGGGGTTGTTTGCCCGAATGGCACCGTATTCCTCCAACAACAAGGAACTCCCGCCATGCAGc > 5:191692/1‑149 (MQ=255)
aTCGAACGCAAAACTAATCATTCCGTACAAAGAGATTGAAGCGACGACTTTACCTGCGAATAATCGATCGTGCCATAAACTGTGACAGGGGTTGTTTGCCCGAATGGCACCGTATTCCTCCAACAACAAGGaa > 6:137668/1‑133 (MQ=255)
aTCGAACGCAAAACTAATCATTCCGTACAAAGAGATTGAAGCGACGACTTTACCTGCGAATAATCGATCGTGCCATAAACTGTGACAGGGGTTGTTTGCCCGAATGGCACCGTATTCCTCCAACAACAAGGaa < 5:137668/133‑1 (MQ=255)
tCGAACGCAAAACTAATCATTCCGTACAAAGAGATTGAAGCGACGACTTTACCTGCGAATAATCGATCGTGCCATAAACTGTGACAGGGGTTGTTTGCCCGAATGGCACCGTATTCCTCCAACAACAAGGAACTCCCGCCATGCAGCGt < 7:110807/149‑1 (MQ=255)
tCGAACGCAAAACTAATCATTCCGTACAAAGAGATTGAAGCGACGACTTTACCTGCGAATAATCGATCGTGCCATAAACTGTGACAGGGGTTGTTTGCCAGAATGGCACCGTATTCCTCCAACAACAAGGAACTCCCGCCATGCAGCGt > 8:119894/1‑149 (MQ=255)
gAACGCAAAACTAATCATTCCGTACAAAGAGATTGAAGCGACGACTTTACCTGCGAATAATCGATCGTGCCATAAACTGTGACAGGGGTTGTTTGCCCGAATGGCACCGTATTCCTCCAACAACAAGGAACTCCCGCCATGCAGCGtt < 4:333966/148‑1 (MQ=255)
gAACGCAAAACTAATCATTCCGTACAAAGAGATTGAAGCGACGACTTTACCTGCGAATAATCGATCGTGCCATAAACTGTGACAGGGGTTGTTTGCCCGAATGGCACCGTATTCCTCCAACAACAAGGAACTCCCGCCATGCAGCGTTc > 7:198151/1‑149 (MQ=255)
gAACGCAAAACTAATCATTCCGTACAAAGAGATTGAAGCGACGACTTTACCTGCGAATAATCGATCGTGCCATAAACTGTGACAGGGGTTGTTTGCCCGAATGGCACCGTATTCCTCCAACAACAAGGAACTCCCGCCATGCAGCGTTc > 8:206320/1‑149 (MQ=255)
gCAAAACTAATCATTCCGTACAAAGAGATTGAAGCGACGACTTTACCTGCGAATAATCGATCGTGCCATAAACTGTGACAGGGGTTGTTTGCCCGAATGGCACCGTATTCCTCCAACAACAAGGAACTCCCGCCATGCAGCGTTCGATc < 6:38505/149‑1 (MQ=255)
gCAAAACTAATCATTCCGTACAAAGAGATTGAAGCGACGACTTTACCTGCGAATAATCGATCGTGCCATAAACTGTGACAGGGGTTGTTTGCCCGAATGGCACCGTATTCCTCCAACAACAAGGAACTCCCGCCATGCAGCGTTCGATc > 8:339957/1‑149 (MQ=255)
gCAAAACTAATCATTCCGTACAAAGAGATTGAAGCGACGACTTTACCTGCGAATAATCGATCGTGCCATAAACTGTGACAGGGGTTGTTTGCCCGAATGGCACCGTATTCCTCCAACAACAAGGAACTCCCGCCATGCAGCGTTCGATc < 4:23737/149‑1 (MQ=255)
gCAAAACTAATCATTCCGTACAAAGAGATTGAAGCGACGACTTTACCTGCGAATAATCGATCGTGCCATAAACTGTGACAGGGGTTGTTTGCCCGAATGGCACCATATTCCTCCAACAACAAGGAACTCCCGCCATGCAGCGTTCGATc > 1:181094/1‑149 (MQ=255)
tAATCATTCCGTACAAAGAGATTGAAGCGACGACTTTACCTGCGAATAATCGATCGTGCCATAAACTGTGACAGGGGTTGTTTGCCCGAATGGCACCGTATTCCTCCAACAACAAGGAACTCCCGCCATGCAGCGTTCGATCGCTACCg > 6:129625/1‑149 (MQ=255)
tAATCATTCCGTACAAAGAGATTGAAGCGACGACTTTACCTGCGAATAATCGATCGTGCCATAAACTGTGACAGGGGTTGTTTGCCCGAATGGCACCGTATTCCTCCAACAACAAGGAACTCCCGCCATGCAGCGTTCGATCGCTACCg > 4:78184/1‑149 (MQ=255)
tAATCATTCCGTACAAAGAGATTGAAGCGACGACTTTACCTGCGAATAATCGATCGTGCCATAAACTGTGACAGGGGTTGTTTGCCCGAATGGCACCGTATTCCTCCAACAACAAGGAACTCCCGCCATGCAGCGTTCGATCGCTACCg > 7:285233/1‑149 (MQ=255)
|
GTTGTTTGCGCAGGTTCCGCCAGAGGTTATGCCAAGGCAGGAGGCAACGGTCGGTGTGCCTGCGTCTGTGGTCCATGTTGACCACGGGCCCGCGGTCTAGCAATTCGCTAAAACGGGTTTTGTGCGATAATCGAACGCAAAACTAACCATTCCGTACAAAGAGATTGAAGCGACGACTTTACCTGCGAATAATCGATCGTGCCATAAACTGTGACAGGGGTTGTTTGCCCGAATGGCACCGTATTCCTCCAACAACAAGGAACTCCCGCCATGCAGCGTTCGATCGCTACCG > NC_002947_CJ‑RC/2900649‑2900940
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
BRESEQ :: bam2aln output
ATTGTTGTTTGCGCAGGTTCCGCCAGAGGTTATGCCAAGGCAGGAGGCAACGGTCGGTGTGCCTGCGTCTGTGGTCCATGTTGACCACGGGCCCGCGGTCTAGCAATTCGCTAAAACGGGTTTTGTGCGATAATCGAACGCAAAACTAACCATTCCGTACAAAGAGATTGAAGCGACGACTTTACCTGCGAATAATCGATCGTGCCATAAACTGTGACAGGGGTTGTTTGCCCGAATGGCACCGTATTCCTCCAACAACAAGGAACTCCCGCCATGCAGCGTTCGATCGCTACCGT > NC_002947_CJ‑RC/2900646‑2900941
|
ATTGTTGTTTGCGCAGGTTCCGCCAGAGGTTATGCCAAGGCAGGAGGCAACGGTCGGTGTGCCTGCGTCTGTGGTCCATGTTGACCACGGGCCCGCGGTCTAGCAATTCGCTAAAACGGGTTTTGTGCGATAATCGAACGCAAAACTAATC > NB501016:282:H2V7GAFX2:2:21309:17205:6794/1‑151 (MQ=60)
ATTGTTGTTTGCGCAGGTTCCGCCAGAGGTTATGCCAAGGCAGGAGGCAACGGTCGGTGTGCCTGCGTCTGTGGTCCATGTTGACCACGGGCCCGCGGTCTAGCAATTCGCTAAAACGGGTTTTGTGCGATAATCGAACGCAAAACTAAT < NB501016:282:H2V7GAFX2:2:11301:13795:9039/150‑1 (MQ=60)
TGTTGTTTGCGCAGGTTCCGCCAGAGGTTATGCCAAGGCAGGAGGCAACGGTCGGTGTGCCTGCGTCTGTGGTCCATGTTGACCACGGGCCCGCGGTCTAGCAATTCGCTAAAACGGGTTTTGTGCGATAATCGAACGCAAAACTAATCAT > NB501016:282:H2V7GAFX2:4:21611:11766:17143/1‑151 (MQ=60)
TGTTGTTTGCGCAGGTTCCGCCAGAGGTTATGCCAAGGCAGGAGGCAACGGTCGGTGTGCCTGCGTCTGTGGTCCATGTTGACCACGGGCCCGCGGTCTAGCAATTCGCTAAAACGGGTTTTGTGCGATAATCGAACGCAAAACTAATCA < NB501016:282:H2V7GAFX2:4:11608:8928:3300/150‑1 (MQ=60)
TGTTTGCGCAGGTTCCGCCAGAGGTTATGCCAAGGCAGGAGGCAACGGTCGGTGTGCCTGCGTCTGTGGTCCATGTTGACCACGGGCCCGCGGTCTAGCAATTCGCTAAAACGGGTTTTGTGCGATAATCGAACGCAAAACTAATCATTCC > NB501016:282:H2V7GAFX2:3:21610:1854:4126/1‑151 (MQ=60)
TGCGCAGGTTCCGCCAGAGGTTATGCCAAGGCAGGAGGCAACGGTCGGTGTGCCTGCGTCTGTGGTCCATGTTGACCACGGGCCCGCGGTCTAGCAATTCGCTAAAACGGGTTTTGTGCGATAATCGAACGCAAAACTAATCATTCCGTA < NB501016:282:H2V7GAFX2:3:21510:8175:2232/150‑1 (MQ=60)
GTTCCGCCTGAGGTTATGCCAATGCAGGAGGCAACGGTCGGTGTGCCTGCGTCTGTGGTCCATGTTGACCACGGGCCCGCGGTCTAGCAATTCGCTAAAACGGGTTTTGTGCGATAATCGAACGCAAAACTAATCATTCCGTACAAAGAGA < NB501016:282:H2V7GAFX2:1:21108:21969:3950/151‑1 (MQ=60)
GTTCCGCCAGAGGTTATGCCAAGGCAGGAGGCAACGGTCGGTGTGCCTGCGTCTGTGGTCCATGTTGACCACGGGCCCGCGGTCTAGCAATTCGCTAAAACGGGTTTTGTGCGATAATCGAACGCAAAACTAATCATTCCGTACAAAG > NB501016:282:H2V7GAFX2:4:21411:22107:7928/1‑148 (MQ=60)
AGAGGTTATGCCAAGGCAGGAGGCAACGGTCGGTGTGCCTGCGTCTGTGGTCCATGTTGACCACGGGCCCGCGGTCTAGCAATTCGCTAAAACGGGTTTTGTGCGATAATCGAACGCAAAACTAATCATTCCGTACAAAGAGATTGAAGCG > NB501016:282:H2V7GAFX2:3:21609:20254:8984/1‑151 (MQ=60)
CCAAGGCAGGAGGCAACGGTCGGTGTGCCTGCGTCTGTGGTCCATGTTGACCACGGGCCCGCGGTCTAGCAATTCGCTAAAACGGGTTTTGTGCGATAATCGAACGCAAAACTAATCATTCCGTACAAAGAGATTGAAGCGACGACTTTAC > NB501016:282:H2V7GAFX2:3:11604:1224:2249/1‑151 (MQ=60)
CCAAGGCAGGAGGCAACGGTCGGTGTGCCTGCGTCTGTGGTCCATGTTGACCACGGGCCCGCGGTCTAGCAATTCGCTAAAACGGGTTTTGTGCGATAATCGAACGCAAAACTAATCATTCCGTACAAAGAGATTGAAGCGACGACTTTAC > NB501016:282:H2V7GAFX2:3:11603:26718:2240/1‑151 (MQ=60)
GGTCGGTGTGCCTGCGTCTGTGGTCCATGTTGACCCCGGGCCCGCGGTCTAGCAATTCGCTAAACGGGGTTTTGTGCGATAATCGAACCAAAAACTAATCATTCCGAAAAAAGAGATTGAAGCGACGACTTTACCTGCGAATAATCGATCG < NB501016:282:H2V7GAFX2:1:11306:18381:7038/151‑1 (MQ=60)
CCTGCGTCTGTGGTCCATGTTGACCACGGGCCCGCGGTCTAGCAATTCGCTAAAACGGGTTTTGTGCGATAATCGAACGCAAAACTAATCATTCCGTACAAAGAGATTGAAGCGACGACTTTACCTGCGAATAATCGATCGTGCCATAAAC > NB501016:282:H2V7GAFX2:3:21503:4187:7309/1‑151 (MQ=60)
CCTGCGTCTGTGGTCCATGTTGACCACGGGCCCGCGGTCTAGCAATTCGCTAAAACGGGTTTTGTGCGATAATCGAACGCAAAACTAATCATTCCGTACAAAGAGATTGAAGCGACGACTTTACCTGCGAATAATCAATCGTGCCATAAA > NB501016:282:H2V7GAFX2:1:11110:17817:3558/1‑150 (MQ=60)
CTGCGTCTGTGGTCCATGTTGACCACGGGCCCGCGGTCTAGCAATTCGCTAAAACGGGTTTTGTGCGATAATCGAACGCAAAACTAATCATTCCGTACAAAGAGATTGAAGCGACGACTTTACCTGCGAATAATCGATCGTGCCATAAACT > NB501016:282:H2V7GAFX2:1:21101:11378:18427/1‑151 (MQ=60)
TGTGGTCCATGTTGACCACGGGCCCGCGGTCTAGCAATTCGCTAAAACGGGTTTTGTGCGATAATCGAACGCAAAACTAATCATTCCGTACAAAGAGATTGAAGCGACGACTTTACCTGCGAATAATCGATCGTGCCATAAACTGTGAC > NB501016:282:H2V7GAFX2:2:11105:8205:15369/1‑149 (MQ=60)
GTGGTCCATGTTGACCCCGGGCCCGCGGTCTAGCAATTCGCTAAAACGGGTTTTGTGCGATAATCGAACGCAAAACTAATCATTCCGTACAAAGAGATTGAAGCGACGACTTTACCTGCGAATAATCGATCGTGCCATAAACTGTGACAGG > NB501016:282:H2V7GAFX2:3:11407:7249:4296/1‑151 (MQ=60)
TGGTCAATGTTGTCCTCGGGCCCGCGGTCTAGCAATTCGCTAAAACGGTTTTTGTGCGATAATCGAACGAAAAACTAATCTTTGCTTACAAAGACTTTGAAGCGACGACTTTACCTGCGAATAATCGATCGTGCCATAAACTGTGACAGG < NB501016:282:H2V7GAFX2:2:21101:17332:12423/150‑1 (MQ=60)
GTCCATGTTGACCACGGGCCCGCGGTCTAGCAATTCGCTAAAACGGGTTTTGTGCGATAATCGAACGCAAAACTAATCATTCCGTACAAAGAGATTGAAGCGACGACTTTACCTGCGAATAATCGATCGTGCCATAAACTGTGACAGGGGT < NB501016:282:H2V7GAFX2:3:11609:20216:10039/151‑1 (MQ=60)
CCATGTTGACCACGGGCCCGCGGTCTAGCAATTCGCTAAAACGGGTTTTGTGCGATAATCGAACGCAAAACTAATCATTCCGTACAAAGAGATTGAAGCGACGACTTTACCTGCGAATAATCGATCGTGCCATAAACTGTGACAGGGGTTG < NB501016:282:H2V7GAFX2:4:11412:12061:11357/151‑1 (MQ=60)
CATGTTGACCACGGGCCCGCGGTCTAGCAATTCGCTAAAACGGGTTTTGTGCGATAATCGAACGCAAAACTAATCATTCCGTACAAAGAGATTGAAGCGACGACTTTACCTGCGAATAATCGATCGTGC > NB501016:282:H2V7GAFX2:1:21303:23887:17946/1‑129 (MQ=60)
TGACCACGGGCCCGCGGTCTAGCAATTCGCTAAAACGGGTTTTGTGCGATAATCGAACGCAAAACTAATCATTCCGTACAAAGAGATTGAAGCGACGACTTTACCTGCGAATAATCGATCGTGCCATAAACTGTGACAGGGGTTGTTTGCC > NB501016:282:H2V7GAFX2:3:11505:19214:7394/1‑151 (MQ=60)
GGGGCCGGCGGTTTAGAAATTCGCTAAAACGGTTTTTGTCAGATAATCGACCGCAAAATTATCATTTCGCTACAAAGAATTTGAAGCGACGACTTTACCTGCGAATAATCGATCGTGCCATAAACTGTGACAGGGGTTGTTTGCCCGAATG < NB501016:282:H2V7GAFX2:3:11410:23175:14183/151‑1 (MQ=60)
GACCGCGGTCTAGCAATTCGCTAAAACGGGTTTTGTTCGATAATAGAACGCAAAACTAATCATTCCGTACAAAGAGATTGAAGCGACGACTTTACATGCGAATAATCGATCGTGCCATAAACTGTGACAGGGGTTGTTTGACCGAATGGC > NB501016:282:H2V7GAFX2:2:11111:2310:19464/1‑150 (MQ=60)
CCCGCGGTCTAGCAATTCGCTAAAACGGGTTTTGTGCGATAATCGAACGCAAAACTAATCATTCCGTACAAAGAGATTGAAGCGACGACTTTACCTGCGAATAATCGATCGTGCCATAAACTGTGACAGGGGTTGTTTGCCCGAATGGCAC > NB501016:282:H2V7GAFX2:4:21412:9032:20028/1‑151 (MQ=60)
CTAGCAATTCGCTAAAACGGGTTTTGTGCGATAATCGAACGCAAAACTAATCATTCCGTACAAAGAGATTGAAGCGACGACTTTACCTGCGAATAATCGATCGTGCCATAAACTGTGACAGGGGTTGTTTGCCCGAATGGCACCGTATTCC > NB501016:282:H2V7GAFX2:2:11112:20188:8680/1‑151 (MQ=60)
GCAATTCGCTAAAACGGGTTTTGTGCGATAATCGAACGCAAAACTAATCATTCCGTACAAAGAGATTGAAGCGACGACTTTACCTGCGAATAATCGATCGTGCCATAAACTGTGACAGGGGTTGTTTGCCCGAATGGCACAGTATTCCTCC < NB501016:282:H2V7GAFX2:4:21601:3420:13738/151‑1 (MQ=60)
ATTCGCTAAAACGGGTTTTGTGCGATAATCGAACGCAAAACTAATCATTCCGTACAAAGAGATTGAAGCGACGACTTTACCTGCGAATAATCGATCGTGCCATAAACTGTGACAGGGGTTGTTTGCCCGAATGGCACCGTATTCCTCCAAC > NB501016:282:H2V7GAFX2:4:21511:24458:6646/1‑151 (MQ=60)
ATTCGCTAAAACGGGTTTTGTGCGATAATCGAACGCAAAACTAATCATTCCGTACAAAGAGATTGAAGCGACGACTTTACCTGCGAATAATCGATCGTGCCATAAACTGTGACAGGGGTTGTTTGCCCGAATGGCACCGTATTCCTCCAAC > NB501016:282:H2V7GAFX2:4:21508:6644:1350/1‑151 (MQ=60)
GCTAAAACGGGTTTTGTGCGATAATCGAACGCAAAACTAATCATTCCGTACAAAGAGATTGAAGCGACGACTTTACCTGCGAATAATCGATCGTGCCATAAACTGTGACAGGGGTTGTTTGCCCGAATGGCACCGTATTCCTCCAACA > NB501016:282:H2V7GAFX2:1:21112:18032:15780/1‑148 (MQ=60)
AAAACGGGTTTTGTGCGATAATCGAACGCAAAACTAATCATTCCGTACAAAGAGATTGAAGCGACGACTTTACCTGCGAATAATCGATCGTGCCATAAACTGTGACAGGGGTTGTTTGCCCGAATGGCACCGTATTCCTCCAACAACAAG < NB501016:282:H2V7GAFX2:1:11101:18396:7188/150‑1 (MQ=60)
GTTTTGTGCGATAATCGAACGCAAAACTAATCATTCCGTACAAAGAGATTGAAGCGACGACTTTACCTGCGAATAATCGATCGTGCCATAAACTGTGACAGGGGTTGTTTGCCCGAATGGCACCGTATTCCTCCAACAACAAGGAACTCCC > NB501016:282:H2V7GAFX2:4:21406:19703:2870/1‑151 (MQ=60)
GTGCGATAATCGAACGCAAAACTAATCATTCCGTACAAAGAGATTGAAGCGACGACTTTACCTGCGAATAATCGATCGTGCCATAAACTGTGACAGGGGTTGTTTGCCCGAATGGCACCGTATTCCTCCAACAACAAGGAACTCCCGCCA < NB501016:282:H2V7GAFX2:4:21610:20742:7731/150‑1 (MQ=60)
TAATCGAACGCAAAACTAATCATTCCGTACAAAGAGATTGAAGCGACGACTTTACCTGCGAATAATCGATCGTGCCATAAACTGTGACAGGGGTTGTTTGCCCGAATGGCACCGTATTCCTCCAACAACAAGGAACTCCCGCCATGCAGCG > NB501016:282:H2V7GAFX2:3:21401:23554:17111/1‑151 (MQ=60)
TAATCGAACGCAAAACTAATCATTCCGTACAAAGAGATTGAAGCGACGACTTTACCTGCGAATAATCGATCGTGCCATAAACTGTGACAGGGGTTGTTTGCCCGAATGGCACCGTATT < NB501016:282:H2V7GAFX2:4:11609:3017:5968/118‑1 (MQ=60)
AATCGAACGCAAAACTAATCATTCCGTACAAAGAGATTGAAGCGACGACTTTACCTGCGAATAATCGATCGTGCCATAAACTGTGACAGGGGTTGTTTGCCCGAATGGCACCGTATTCCTCCAACAACAAGGAAC < NB501016:282:H2V7GAFX2:3:11603:5852:15750/135‑1 (MQ=60)
ATCGAACGCAAAACTAATCATTCCGTACAAAGAGATTGAAGCGACGACTTTACCTGCGAATAATCGATCGTGCCATAAACTGTGACAGGGGTTGTTTGCCCGAATGGCACCGTATTCCTCCAACAACAAGGAACTCCCGCCATGCAGCGTT < NB501016:282:H2V7GAFX2:4:11509:10451:13468/151‑1 (MQ=60)
CGAACGCAAAACTAATCATTCCGTACAAAGAGATTGAAGCGACGACTTTACCTGCGAATAATCGATCGTGCCATAAACTGTGACAGGGGTTGTTTGCCCGAATGGCACCGTATTCCTCCAACAACAAGGAACTCCCGCCATGCAGCGTTCG > NB501016:282:H2V7GAFX2:4:21402:19326:15782/1‑151 (MQ=60)
CGCAAAACTAATCATTCCGTACAAAGAGATTGAAGCGACGACTTTACCTGCGAATAATCGATCGTGCCATAAACTGTGACAGGGGTTGTTTGCCCGAATGGCACCATATTCCTCCAACAACAAGGAACTCCCGCCATGCAGCGTTCGATCG > NB501016:282:H2V7GAFX2:1:11311:2199:13400/1‑151 (MQ=60)
CTAATCATTCCGTACAAAGAGATTGAAGCGACGACTTTACCTGCGAATAATCGATCGTGCCATAAACTGTGACAGGGGTTGTTTGCCCGAATGGCACCGTATTCCTCCAACAACAAGGAACTCCCGCCATGCAGCGTTCGATCGCTACCGT > NB501016:282:H2V7GAFX2:4:21507:5218:6182/1‑151 (MQ=60)
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ATTGTTGTTTGCGCAGGTTCCGCCAGAGGTTATGCCAAGGCAGGAGGCAACGGTCGGTGTGCCTGCGTCTGTGGTCCATGTTGACCACGGGCCCGCGGTCTAGCAATTCGCTAAAACGGGTTTTGTGCGATAATCGAACGCAAAACTAACCATTCCGTACAAAGAGATTGAAGCGACGACTTTACCTGCGAATAATCGATCGTGCCATAAACTGTGACAGGGGTTGTTTGCCCGAATGGCACCGTATTCCTCCAACAACAAGGAACTCCCGCCATGCAGCGTTCGATCGCTACCGT > NC_002947_CJ‑RC/2900646‑2900941
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| Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 0 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
