Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A1 F64 I1 R1
|
60 |
70.4 |
2989830 |
98.5% |
2944982 |
146.7 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| RA |
NC_002947_CJ‑RC |
5,545,841 |
G→A |
T78I (ACC→ATC) |
rplI ← |
50S ribosomal protein L9 |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NC_002947_CJ‑RC | 5,545,841 | 0 | G | A | 100.0%
| 311.6
/ NA
| 89 | T78I (ACC→ATC) | rplI | 50S ribosomal protein L9 |
| Reads supporting (aligned to +/- strand): ref base G (0/0); new base A (50/39); total (50/39) |
CGCCAACCTGACGGATGGTGCCGTTCGGCAGACGAACTTCAGCCTTGGCCACTTCAACGCCGGAGGCGGTCAGGGCGTCAGCGATGTCGTGGGTGCCGATCGAACCGAACAGCTTGCCTTCGTCGCCAGCGGTGGCAGTGATGGTCACTTCCAGCTCGGCCAGTTGGGCAGCGCGGCTTTCAGCCGAAGCTTTCTTGTCAGCGGCTGCTTTTTCCAGCTCGGCACGACGCTCTTCGAACGCAGCCAGGTTGGCGGCGTTGGCAACGGTGGCCTTGCCGAATGGCAGCAG > NC_002947_CJ‑RC/5545698‑5545986
|
cGCCAACCTGACGGATGGTGCCGTTCGGCAGACGAACTTCAGCCTTGGCCACTTCAACGCCGGAGGCGGTCAGGGCGTCACCGATGTCGTGGGTGCCGATCGAACCGAACAGCTTGCCTTCGTCGCCAGCGGTGGCAGTGATGATCAc < 2:324921/148‑1 (MQ=255)
gCCAACCTGACGGATGGTGCCGTTCGGCAGACGAACTTCAGCCTTGGCCACTTCAACGCCGGAGGCGGTCAGGGCGTCAGCGATGTCGTGGGTGCCGATCGAACCGAACAGCTTGCCTTCGTCGCCAGCGGTGGCAGTGATGATCGCtt > 5:101816/1‑149 (MQ=255)
gCCAACCTGACGGATGGTGCCGTTCGGCAGACGAACTTCAGCCTTGGCCACTTCAACGCCGGAGGCGGTCAGGGCGTCAGCGATGTCGTGGGTGCCGATCGAACCGAACAGCTTGCCTTCGTCGCCAGCGGTGGCAGTGATGATCACtt > 3:70466/1‑149 (MQ=255)
gCCAACCTGACGGATGGTGCCGTTCGGCAGACGAACTTCAGCCTTGGCCACTTCAACGCCGGAGGCGGTCAGGGCGTCAGCGATGTCGTGGGTGCCGATCGAACCGAACAGCTTGCCTTCGTCGCCAGCGGTGGCAGTGATGATCACtt > 6:165765/1‑149 (MQ=255)
gCCAACCTGACGGATGGTGCCGTTCGGCAGACGAACTTCAGCCTTGGCCACTTCAACGCCGGAGGCGGTCAGGGCGTCAGCGATGTCGTGGGTGCCGATCGAACCGAACAGCTTGCCTTCGTCGCCAGCGGTGGCAGTGATGATCACt < 4:353585/148‑1 (MQ=255)
aaCCTGACGGATGGTGCCGTTCGGCAGACGAACTTCAGCCTTGGCCACTTCAACGCCGGAGGCGGTCAGGGCGTCAGCGATGTCGTGGGTGCCGATCGAACCGAACAGCTTGCCTTCGTCGCCAGCGGTGGCAGTGATGATCACTTc > 5:365063/1‑147 (MQ=255)
aCCTGACGGATGGTGCCGTTCGGCAGACGAACTTCAGCCTTGGCCACTTCAACGCCGGAGGCGGTCAGGGCGTCAGCGATGTCGTGGGTGCCGATCGAACCGAACAGCTTGCCTTCGTCGCCAGCGGTGGCAGTGATGATCACTTCCAg > 2:207341/1‑149 (MQ=255)
aCCTGACGGATGGTGCCGTTCGGCAGACGAACTTCAGCCTTGGCCACTTCAACGCCGGAGGCGGTCAGGGCGTCAGCGATGTCGTGGGTGCCGATCGAACCGAACAGCTTGCCTTCGTCGCCAGCGGTGGCAGTGATGATCACTTCCAg > 3:96387/1‑149 (MQ=255)
ccTGACGGATGGTGCCGTTCGGCAGACGAACTTCAGCCTTGGCCACTTCAACGCCGGAGGCGGTCAGCGCGTCAGCGATGTCGTGGGTGCCGCTCGAACCGAACAGCTTGCCTTCGTCGCCAGCGGTGGCAGTGATGATCACTTCCAGc > 7:150579/1‑149 (MQ=255)
cTGACGGATGGTGCCGTTCGGCAGACGAACTTCAGCCTTGGCCACTTCAACGCCGGAGGCGGTCAGGGCGTCAGCGATGTCGTGGGTGCCGATCGAACCGAACAGCTTGCCTTCGTCGCCAGCGGTGGCAGTGATGATCACTTCCAGCt < 6:42844/149‑1 (MQ=255)
cGGATGGTGCCGTTCGGCAGACGAACTTCAGCCTTGGCCACTTCAACGCCGGAGGCGGTCAGGGCGTCAGCGATGGCGTGGGTGCCGATCGAACCGAACAGCTTGCCTTCGTCGCCAGCGGTGGCAGTGATGATCACTTCCAGCTCGGc < 2:239423/149‑1 (MQ=255)
gTGCCGTTCGGCAGACGAACTTCAGCCTTGGCCACTTCAACGCCGGAGGCGGTCAGGGCGTCAGCGATGTCGTGGGTGCCGATCGAACCGAACAGCTTGCCTTCGTCGCCAGCGGTGGCAGTGATGATCACTTCCAGCTCGGCCAGtt < 1:123892/148‑1 (MQ=255)
cGTTCGGCAGACGAACTTCAGCCTTGGCCACTTCAACGCCGGAGGCGGTCAGGGCGTCAGCGATGTCGTGGGTGCCGATCGAACCGAACAGCTTGCCTTCGTCGCCAGCGGTGGCAGTGATGATCACTTCCAGCTCGGCCAGTTGGGCa < 3:156876/149‑1 (MQ=255)
ggCAGACGAACTTCAGCCTTGGCCACTTCAACGCCGGAGGCGGTCAGGGCGTCAGCGATGTCGTGGGTGCCGATCGAACCGAACAGCTTGCCTTCGTCGCCAGCGGTGGCAGTGATGATCACTTCCAGCTCGGCCAGTTGGGCAGcgcg > 1:207024/1‑149 (MQ=255)
gCAGACGAACTTCAGCCTTGGCCACTTCAACGCCGGAGGCGGTCAGGGCGTCAGCGATGTCGTGGGTGCCGATCGAACCGAACAGCTTGCCTTCGTCGCCAGCGGTGGCAGTGATGATCACTTCCAGCTCGGCCAGTTGGGCAGCGCgg > 8:181495/1‑149 (MQ=255)
aGACGAACTTCAGCCTTGGCCACTTCAACGCCGGAGGCGGTCAGGGCGTCAGCGATGTCGTGGGTGCCGATCGAACCGAACAGCTTGCCTTCGTCGCCAGCGGTGGCAGTGATGATCACTTCCAGCTCGGCCAGTTGGGCAGCGCGGCt < 1:220612/149‑1 (MQ=255)
gACGAACTTCAGCCTTGGCCACTTCAACGCCGGAGGCGGTCAGGGCGTCAGCGATGTCGTGGGTGCCGATCGAACCGAACAGCTTGCCTTCGTCGCCAGCGGTGGCAGTGATGATCACTTCCAGCTCGGCCAGTTCGGCAGCGCGGCtt > 7:310009/1‑149 (MQ=255)
gAACTTCAGCCTTGGCCACTTCAACGCCGGAGGCGGTCAGGGCGTCAGCGATGTCGTGGGTGCCGATCGAACCGAACAGCTTGCCTTCGTCGCCAGCGGTGGCAGTGATGATCACTTCCAGCTCGGCCAGTTGGGCAGCGCGGCttt > 1:367521/1‑147 (MQ=255)
gAACTTCAGCCTTGGCCACTTCAACGCCGGAGGCGGTCAGGGCGTCAGCGATGTCGTGGGTGCCGATCGAACCGAACAGCTTGCCTTCGTCGCCAGCGGTGGCAGTGATGATCACTTCCAGCTCGGCCAGTTGGGCAGCGCGGCttt > 7:317645/1‑147 (MQ=255)
gAACTTCAGCCTTGGCCACTACAACGCCGGAGGCGGTCAGGGCGTCAGCGATCTCGTGGGTGCCGATCGAACCGAACAGCTTGCCTTCGTCGCCAGCGGTGGCAGTGATGATCACTTCCAGCTCGGCCAGTTGGGCAGCGCGGCttt > 1:261625/1‑147 (MQ=255)
cAGCCTTGGCCACTTCAACGCCGGAGGCGGTCAGGGCGTCAGCGATGTCGTGGGTGCCGATCGAACCGAACAGCTTGCCTTCGTCGCCAGCGGTGGCAGTGATGATCACTTCCAGCTCGGCCAGTTGGGCAGCGCGGCTTTCAGCCg < 6:199122/147‑1 (MQ=255)
aGCCTTGGCCACTTCAACGCCGGAGGCGGTCAGGGCGTCAGCGATGTCGTGGGTGCCGATCGAACCGAACAGCTTGCCTTCGTCGCCAGCGGTGGCAGTGATGATCACTTCCAGCTCGGCCAGTTGGGCAGCGCGGCTTTCAGCCGAAg < 6:50888/149‑1 (MQ=255)
ccTTGGCCACTTCAACGCCGGAGGCGGTCAGGGCGTCAGCGATGTCGTGGGTGCCGATCGAACCGAACAGCTTGCCTTCGTCGCCAGCGGTGGCAGTGATGATCACTTCCAGCTCGGCCAGTTGGGCAGCGCGGCTTTCAGCCGAAGCt > 8:221816/1‑149 (MQ=255)
ccTTGGCCACTTCAACGCCGGAGGCGGTCAGGGCGTCAGCGATGTCGTGGGTGCCGATCGAACCGAACAGCTTGCCTTCGTCGCCAGCGGTGGCAGTGATGATCACTTCCAGCTCGGCCAGTTGGGCAGCGCGGCTTTCAGCCGAAGCt > 4:227676/1‑149 (MQ=255)
ttGGCCACTTCAACGCCGGAGGCGGTCAGGGCGTCAGCGATGTCGTGGGTGCCGATCGAACCGAACAGCTTGCCTTCGTCGCCAGCGGTGGCAGTGATGATCACTTCCAGCTCGGCCAGTTGGGCAGCGCGGCTTTCAGCCGAAGCttt > 4:45056/1‑149 (MQ=255)
ggCCACTTCAACGCCGGAGGCGGTCAGGGCGTCAGCGATGTCGTGGGTGCCGATCGAACCGAACAGCTTGCCTTCGTCGCCAGCGGTGGCAGTGATGATCACTTCCAGCTCGGCCAGTTGGGCAGCGCGGCTTTCAGCCGAAGCttt < 4:163962/147‑1 (MQ=255)
ggCCACTTCAACGCCGGAGGCGGTCAGGGCGTCAGCGATGTCGTGGGTGCCGATCGAACCGAACAGCTTGCCTTCGTCGCCAGCGGTGGCAGTGATGATCACTTCCAGCTCGGCCAGTTGGGCAGCGCGGCTTTCAGCCGAAGCttt < 1:264512/147‑1 (MQ=255)
ggCCACTTCAACGCCGGAGGCGGTCAGGGCGTCAGCGATGTCGTGGGTGCCGATCGAACCGAACAGCTTGCCTTCGTCGCCAGCGGTGGCAGTGATGATCACTTCCAGCTCGGCCAGTTGGGCAGCGCGGCTTTCAGCCGAAGCTTTc < 5:165765/148‑1 (MQ=255)
gCCACTTCAACGCCGGAGGCGGTCAGGGCGTCAGCGATGTCGTGGGTGCCGATCGAACCGAACAGCTTGCCTTCGTCGCCAGCGGTGGCAGTGATGATCACTTCCAGCTCGGCCAGTTGGGCAGCGCGGCTTTCAGCCGAAGCTTTCt < 8:329005/148‑1 (MQ=255)
cACTTCAACGCCGGAGGCGGTCAGGGCGTCAGCGATGTCGTGGGTGCCGATCGAACCGAACAGCTTGCCTTCGTCGCCAGCGGTGGCAGTGATGATCACTTCCAGCTCGGCCAGTTGGGCAGCGCGGCTTTCAGCCGAAGCTTTCTTg > 3:212819/1‑148 (MQ=255)
cACTTCAACGCCGGAGGCGGTCAGGGCGTCAGCGATGTCGTGGGTGCCGATCGAACCGAACAGCTTGCCTTCGTCGCCAGCGGTGGCAGTGATGATCACTTCCAGCTCGGCCAGTTGGGCAGCGCGGCTTTCAGCCGAAGCTTTCTTGt < 1:132580/149‑1 (MQ=255)
cACTTCAACGCCGGAGGCGGTCAGGGCGTCAGCGATGTCGTGGGTGCCGATCGAACCGAACAGCTTGCCTTCGTCGCCAGCGGTGGCAGTGATGATCACTTCCAGCTCGGCCAGTTGGGCAGCGCGGCTTTCAGCCGAAGCTTTCTTGt > 7:26667/1‑149 (MQ=255)
tCAACGCCGGAGGCGGTCAGGGCGTCAGCGATGTCGTGGGTGCCGATCGAACCGAACAGCTTGCCTTCGTCGCCAGCGGTGGCAGTGATGATCACTTCCAGCTCGGCCAGTTGGGCAGCGCGGCTTTCAGCCGAAGCTTTCTTGTCAGc > 6:99160/1‑149 (MQ=255)
cAACGCCGGAGGCGGTCAGGGCGTCAGCGATGTCGTGGGTGCCGATCGAACCGAACAGCTTGCCTTCGTCGCCAGCGGTGGCAGTGATGATCACTTCCAGCTCGGCCAGTTGGGCAGCGCGGCTTTCAGCCGAAGCTTTCTTGTCAGCg > 5:76937/1‑149 (MQ=255)
aaCGCCGGAGGCGGTCAGGGCGTCAGCGATGTCGTGGGTGCCGATCGAACCGAACAGCTTGCCTTCGTCGCCAGCGGTGGCAGTGATGATCACTTCCAGCTCGGCCAGTTGGGCAGCGCGGCTTTCAGCCGAAGCTTTCTTGTCAGCgg < 4:103838/149‑1 (MQ=255)
aaCGCCGGAGGCGGTCAGGGCGTCAGCGATGTCGTGGGTGCCGATCGAACCGAACAGCTTGCCTTCGTCGCCAGCGGTGGCAGTGATGATCACTTCCAGCTCGGCCAGTTGGGCAGCGCGGCTTTCAGCCGAAGCTTTCTTGTCAGCgg > 4:300307/1‑149 (MQ=255)
aaCGCCGGAGGCGGTCAGGGCGTCAGCGATGTCGTGGGTGCCGATCGAACCGAACAGCTTGCCTTCGTCGCCAGCGGTGGCAGTGATGATCACTTCCAGCTCGGCCAGTTGGGCAGCGCGGCTTTCAGCCGAAGCTTTCTTGTCAGCgg > 1:258761/1‑149 (MQ=255)
aCGCCGGAGGCGGTCAGGGCGTCAGCGATGTCGTGGGTGCCGATCGAACCGAACAGCTTGCCTTCGTCGCCAGCGGTGGCAGTGATGATCACTTCCAGCTCGGCCAGTTGGGCAGCGCGGCTTTCAGCCGAAGCTTTCTTGTCAGCGgc > 8:5450/1‑149 (MQ=255)
gCCGGAGGCGGTCAGGGCGTCAGCGATGTCGTGGGTGCCGATCGAACCGAACAGCTTGCCTTCGTCGCCAGCGGTGGCAGTGATGATCACTTCCAGCTCGGCCAGTTGGGCAGCGCGGCTTTCAGCCGAAGCTTTCTTGTCAGCGgctg > 6:241622/1‑149 (MQ=255)
gCCGGAGGCGGTCAGGGCGTCAGCGATGTCGTGGGTGCCGATCGAACCGAACAGCTTGCCTTCGTCGCCAGCGGTGGCAGTGATGATCACTTCCAGCTCGGCCAGTTGGGCAGCGCGGCTTTCAGCCGAAGCTTTCTTGTCAGCGgctg > 4:25475/1‑149 (MQ=255)
cGGAGGCGGTCAGGGCGTCGGCGATGTCGTGGGTGCCGATCGAACCGAACAGCTTGCCTTCGTCGCCAGCGGTGGCAGTGATGATCACTTCCAGCTCGGCCAGTTGGGCAGCGCGGCTTTCa < 4:124998/122‑1 (MQ=255)
cGGAGGCGGTCAGGGCGTCGGCGATGTCGTGGGTGCCGATCGAACCGAACAGCTTGCCTTCGTCGCCAGCGGTGGCAGTGATGATCACTTCCAGCTCGGCCAGTTGGGCAGCGCGGCTTTCa > 3:124998/1‑122 (MQ=255)
gCGGTCAGGGCGTCAGCGATGTCGTGGGTGCCGATCGAACCGAACAGCTTGCCTTCGTCGCCAGCGGTGGCAGTGATGATCTCTTCCAGCTCGGCCAGTTGGGCAGCGCGGCTTTCAGCCGAAGCTTTCTTGTCAGCGGCTGCTTTTTc < 8:271117/149‑1 (MQ=255)
gCGGTCAGGGCGTCAGCGATGTCGTGGGTGCCGATCGAACCGAACAGCTTGCCTTCGTCGCCAGCGGTGGCAGTGATGATCACTTCCAGCTCGGCCAGTTGGGCAGCGCGGCTTTCCGCCGAAGCTTTCTTGTCAGCGGCTGCTTTTTc < 5:294483/149‑1 (MQ=255)
gCGGTCAGGGCGTCAGCGATGTCGTGGGTGCCGATCGAACCGAACAGCTTGCCTTCGTCGCCAGCGGTGGCAGTGATGATCACTTCCAGCTCGGCCAGTTGGGCAGCGCGGCTTTCAGCCGAAGCTTTCTTGTCAGCGGCTGCTTTTTc < 8:251277/149‑1 (MQ=255)
ggTCAGGGCGTCAGCGATGTCGTGGGTGCCGATCGAACCGAACAGCTTGCCTTCGTCGCCAGCGGTGGCAGTGATGATCACTTCCAGCTCGGCCAGTTGGGCAGCGCGGCTTTCAGCCGAAGCTTTCTTGTCAGCGGCTGCTTTTTc > 8:357019/1‑147 (MQ=255)
ggTCAGGGCGTCAGCGATGTCGTGGGTGCCGATCGAACCGAACAGCTTGCCTTCGTCGCCAGCGGTGGCAGTGATGATCACTTCCAGCTCGGCCAGTTGGGCAGCGCGGCTTTCAGCCGAAGCTTTCTTGTCAGCGGCTGCTTTTTCCa < 1:68279/149‑1 (MQ=255)
tCAGGGCGTCAGCGATGTCGTGGGTGCCGATCGAACCGAACAGCTTGCCTTCGTCGCCAGCGGTGGCAGTGATGATCACTTCCAGCTCGGCCAGTTGGGCAGCGCGGCTTTCAGCCGAAGCTTTCTTGTCAGCGGCTGCTTTTTCCAGc > 5:78815/1‑149 (MQ=255)
aGGGCGTCAGCGATGTCGTGGGTGCCGATCGAACCGAACAGCTTGCCTTCGTCGCCAGCGGTGGCAGTGATGATCACTTCCAGCTCGGCCAGTTGGGCAGCGCGGCTTTCAGCCGAAGCTTTCTTGTCAGCGGCTGCTTTTTCCAGCTc < 2:111903/149‑1 (MQ=255)
ggCGTCAGCGATGTCGTGGGTGCCGATCGAACCGAACAGCTTGCCTTCGTCGCCAGCGGTGGCAGTGATGATCACTTCCAGCTCGGCCAGTTGGGCAGCGCGGCTTTCAGCCGAAGCTTTCTTGTCAGCGGCTGCTTTTTCCAGCTCgg > 6:261947/1‑149 (MQ=255)
cGTCAGCGATGTCGTGGGTGCCGATCGAACCGAACAGCTTGCCTTCGTCGCCAGCGGTGGCAGTGATGATCACTTCCAGCTCGGCCAGTTGGGCAGCGCGGCTTTCAGCCGAAGCTTTCTTGTCAGCGGCTGCTTTTTCCAGCTCGGCa < 1:148169/149‑1 (MQ=255)
gTCAGCGATGTCGTGGGTGCCGATCGAACCGAACAGCTTGCCTTCGTCGCCAGCGGTGGCAGTGATGATCACTTCCAGCTCGGCCAGTTGGGCAGCGCGGCTTTCAGCCGAAGCTTTCTTGTCAGCGGCTGCTTTTTCCAGCTCGGCac < 3:245322/149‑1 (MQ=255)
tCAGCGATGTCGTGGGTGCCGATCGAACCGAACAGCTTGCCTTCGTCGCCAGCGGTGGCAGTGATGATCACTTCCAGCTCGGCCAGTTGGGCAGCGCGGCTTTCAGCCGAAGCTTTCTTGTCAGCGGCTGCTTTTTCCAGCTCGGCac > 5:319121/1‑148 (MQ=255)
gCGATGTCGTGGGTGCCGATCGAACCGAACAGCTTGCCTTCGTCGCCAGCGGTGGCAGTGATGATCACTTCCAGCTCGGCCAGTTGGGCAGCGCGGCTTTCAGCCGAAGCTTTCTTGTCAGCGGCTGCTTTTTCCAGCTCGGCacgacg > 7:143681/1‑149 (MQ=255)
gtGTCGTGGGTGCCGATCGAACCGAACAGCTTGCCTTCGTCGCCAGCGGTGGCAGTGATGAACACTTCCAGCTCGGCCAGTTGGGAAGCGCGGCTTTCAGCCGAAGCTTTCTTGTCAGCGGCTGCTTTTTCCAGCTCGGAACGACGctc > 3:212721/2‑149 (MQ=255)
tCGTGGGTGCCGATCGAACCGAACAGCTTGCCTTCGTCGCCAGCGGTGGCAGTGATGATCACTTCCAGCTCGGCCAGTTGGGCAGCGCGGCTTTCAGCCGAAGCTTTCTTGTCAGCGGCTGCTTTTTCCAGCTCGGCACGACGCTCtt < 4:44373/148‑1 (MQ=255)
tGGGTGCCGATCGAACCGAACAGCTTGCCTTCGTCGCCAGCGGTGGCAGTGATGATCACTTCCAGCTCGGCCAGTTGGGCAGCGCGGCTTTCAGCCGAAGCTTTCTTGTCAGCGGCTGCTTTTTCCAGCTCGGCACGACGCTCTTCGaa > 4:158452/1‑149 (MQ=255)
tGGGTGCCGATCGAACCGAACAGCTTGCCTTCGTCGCCAGCGGTGGCAGTGATGATCACTTCCAGCTCGGCCAGTTGGGCAGCGCGGCTTTCAGCCGAAGCTTTCTTGTCAGCGGCTACTTTTTCCAGCGCGGCACGACGCTCTTCGaa < 8:310009/149‑1 (MQ=255)
ggTGCCGATCGAACCGAACAGCTTGCCTTCGTCGCCAGCGGTGGCAGTGATGATCACTTCCAGCTCGGCCAGTTGGGCAGCGCGGCTTTCAGCCGAAGCTTTCTTGTCAGCGGCTGCTTTTTCCAGCTCGGCACGACGCTCTTCGAAc < 2:228673/148‑1 (MQ=255)
gTGCCGATCGAACCGAACAGCTTGCCTTCGTCGCCAGCGGTGGCAGTGATGATCACTTCCAGCTCGGCCAGTTGGGCAGCGCGGCTTTCAGCCGAAGCTTTCTTGTCAGCGGCTGCTTTTTCCAGCTCGGCACGACGCTCTTCGAACg > 8:339378/1‑148 (MQ=255)
cGATCGAACCGAACAGCTTGCCTTCGTCGCCAGCGGTGGCAGTGATGATCACTTCCAGCTCGGCCAGTTGGGCAGCGCGGCTTTCAGCCGAAGCTTTCTTGTCAGCGGCTGCTTTTTCCAGCTCGGCACGACGCTCTTCGAACGCAGcc < 7:325002/149‑1 (MQ=255)
aTCGAACCGAACAGCTTGCCTTCGTCGCCAGCGGTGGCAGTGATGATCACTTCCAGCTCGGCCAGTTGGGCAGCGCGGCTTTCAGCCGAAGCTTTCTTGTCAGCGGCTGCTTTTTCCAGCTCGGCACGACGCTCTTCGAACGCAGCCAg < 2:213697/149‑1 (MQ=255)
aTCGAACCGAACAGCTTGCCTTCGTCGCCAGCGGTGGCAGTGATGATCACTTCCAGCTCGGCCAGTTGGGCAGCGCGGCTTTCAGCCGAAGCTTTCTTGTCAGCGGCTGCTTTTTCCAGCTCGGCACGACGCTCTTCGAACGCAGCCAg > 5:203844/1‑149 (MQ=255)
cgaaccgaacAGCTTGCCTTCGTCGCCAGCGGTGGCAGTGATGATCACTTCCAGCTCGGCCAGTTGGGCAGCGCGGCTTTCAGCCGAAGCTTTCTTGTCAGCGGCTGCTTTTTCCAGCTCGGCACGACGCTCTTCGAACGCAGCCAGGt > 1:77221/1‑149 (MQ=255)
gaaccgaacAGCTTGCCTTCGTCGCCAGCGGTGGCAGTGATGATCACTTCCAGCTCGGCCAGTTGGGCAGCGCGGCTTTCAGCCGAAGCTTTCTTGTCAGCGGCTGCTTTTTCCAGCTCGGCACGACGCTCTTCGAACGCAGCCAGGtt > 1:101354/1‑149 (MQ=255)
aGCTTGCCTTCGTCGCCAGCGGTGGCAGTGATGATCACTTCCAGCTCGGCCAGTTGGGCAGCGCGGCTTTCAGCCGAAGCTTTCTTGTCAGCGGCTGCTTTTTCCAGCTCGGCACGACGCTCTTCGAACGCAGCCAGGTTGGCGGCGtt < 3:45056/149‑1 (MQ=255)
aGCTTGCCTTCGTCGCCAGCGGTGGCAGTGATGATCACTTCCAGCTCGGCCAGTTGGGCAGCGCGGCTTTCAGCCGAAGCTTTCTTGTCAGCGGCTGCTTTTTCCAGCTCGGCACGACGCTCTTCGAACGCAGCCAGGTTGGCGGCGtt < 1:184339/149‑1 (MQ=255)
aGCTTGCCTTCGTCGCCAGCGGTGGCAGTGATGATCACTTCCAGCTCGGCCAGTTGGGCAGCGCGGCTTTCAGCCGAAGCTTTCTTGTCAGCGGCTGCTTTTTCCAGCTCGGCACGACGCTCTTCGAACGCAGCCAGGTTGGCGGCGtt > 3:346307/1‑149 (MQ=255)
gCTTGCCTTCGTCGCCAGCGGTGGCAGTGATGATCACTTCCAGCTCGGCCAGTTGGGCAGCGCGGCTTACAGCCGAAGCTTTCTTGTCAGCGGCTGCTTTTTCCAGCTCGGCACGACGCTCTTCGAACGCAGCCAGGTTGGCGGCGTTg > 7:19293/1‑149 (MQ=255)
ttGCCTTCGTCGCCAGCGGTGGCAGTGATGATCACTTCCAGCTCGGCCAGTTGGGCAGCGCGGCTTTCAGCCGAAGCTTTCTTGTCAGCGGCTGTTTTTTCCAGCTCGGCACGACGCTCTTCGAACGCAGCCAGGTTGGCGGCGTTgg > 5:253586/1‑148 (MQ=255)
cTTCGTCGCCAGCGGTGGCAGTGATGATCACTTCCAGCTCGGCCAGTTGGGCAGCGCGGCTTTCAGCCGAAGCTTTCTTGTCAGCGGCTGCTTTTTCCAGCTCGGCACGACGCTCTTCGAACGCAGCCAGGTTGGCGGCGTTGGCAACg > 6:225800/1‑149 (MQ=255)
ttCGTCGCCAGCGGTGGCAGTGATGATCACTTCCAGCTCGGCCAGTTGGGCAGCGCGGCTTTCAGCCGAAGCTTTCTTGTCAGCGGCTGCTTTTTCCAGCTCGGCACGACGCTCTTCGAACGCAGCCAGGTTGGCGGCGTTGGCAACgg > 6:57110/1‑149 (MQ=255)
cgtcgCCAGCGGTGGCAGTGATGATCACTTCCAGCTCGGCCAGTTGGGCAGCGCGGCTTTCAGCCGAAGCTTTCTTGTCAGCGGCTGCTTTTTCCAGCTCGGCACGACGCTCTTCGAACGCAGCCAGGTTGGCGGCGTTGGCAACGGt < 4:212819/148‑1 (MQ=255)
cgtcgCCAGCGGTGGCAGTGATGATCACTTCCAGCTCGGCCAGTTGGGCAGCGCGGCTTTCAGCCGAAGCTTTCTTGTCAGCGGCTGCTTTTTCCAGCTCGGCACGACGCTCTTCGAACGCAGCCAGGTTGGCGGCGTTGGCAACGGt < 7:357019/148‑1 (MQ=255)
tcgCCAGCGGTGGCAGTGATGATCTCTTCCAGCTCGGCCAGTTGGGCAGCGCGGCTTTCAGCCGAAGCTTTCTTGTCAGCGGCTGCTTTTTCGAGCTCGGCACGACGCTCTTCGAACGCAGCCAGGTTGGCGGCGTTGGCAACGGTGGc < 2:261625/149‑1 (MQ=255)
tcgCCAGCGGTGGCAGTGATGATCACTTCCAGCTCGGCCAGTTGGGCAGCGCGGCTTTCAGCCGAAGCTTTCTTGTCAGCGGCTGCTTTTTCCAGCTCGGCACGACGCTCTTCGAACGCAGCCAGGTTGGCGGCGTTGGCAACGGTGGc < 8:317645/149‑1 (MQ=255)
gCCAGCGGTGGCAGTGATGATCACTTCCAGCTCGGCCAGTTGGGCAGCGCGGCTTTCAGCCGAAGCTTTCTTGTCAGCGGCTGCTTTTTCCAGCTCGGCACGACGCTCTTCGAACGCAGCCAGGTTGGCGGCGTTGGCAACGGTGGCCt > 1:231504/1‑149 (MQ=255)
ccAGCGGTGGCAGTGATGATCACTTCCAGCTCGGCCAGTTGGGCAGCGCGGCTTTCAGCCGAAGCTTTCTTGTCAGCGGCTGCTTTTTCCAGCTCGGCACGACGCTCTTCGAACGCAGCCAGGTTGGCGGCGTTGGCAACGGTGGCCtt > 1:108540/1‑149 (MQ=255)
ccAGCGGTGGCAGTGATGATCACTTCCAGCTCGGCCAGTTGGGCAGCGCGGCTTTCAGCCGAAGCTTTCTTGTCAGCGGCTGCTTTTTCCAGCTCGGCACGACGCTCTTCGAACGCAGCCAGGTTGGCGGCGTTGGCAACGGTGGCCtt > 1:231833/1‑149 (MQ=255)
ccAGCGGTGGCAGTGATGATCACTTCCAGCTCGGCCAGTTGGGCAGCGCGGCTTTCAGCCGAAGCTTTCTTGTCAGCGGCTGCTTTTTCCAGCTCGGCACGACGCTCTTCGAACGCAGCCAGGTTGGCGGCGTTGGCAACGGTGGCCtt < 3:1716/149‑1 (MQ=255)
ccAGCGGTGGCAGTGATGATCACTTCCAGCTCGGCCAGATGGGCAGCGCGGCTTTCAGCCGAAGCTTTCTTGTCAGCGGCTGCTTTTTCCAGCACGGCACGACGCTCTTCGAACGCAGCCAGGTAGGCGGCGTTGGCAACGCTGGCCtt > 2:154947/1‑149 (MQ=255)
cAGCGGTGGCAGTGATGATCACTTCCAGCTCGGCCAGTTGGGCAGCGCGGCTTTCAGCCGAAGCTTTCTTGTCAGCGGCTGCTTTTTCCAGCTCGGCACGACGCTCTTCGAACGCAGCCAGGTTGGCGGCGTTGGCAACGGTGGCCTTg > 2:370288/1‑149 (MQ=255)
cAGCGGTGGCAGTGATGATCACTTCCAGCTCGGCCAGTTGGGCAGCGCGGCTTTCAGCCGAAGCTTTCTTGTCAGCGGCTGCTTTTTCCAGCTCGGCACGACGCTCTTCGAACGCAGCCAGGTTGGCGGCGTTGGCAACGGTGGCCTTg > 2:212119/1‑149 (MQ=255)
aGCGGTGGCAGTGATGATCACTTCCAGCTCGGCCAGTTGGGCAGCGCGGCTTTCAGCCGAAGCTTTCTTGTCAGCGGCTGCTTTTTCCAGCTCGGCACGACGCTCTTCGAACGCAGCCAGGTTGGCGGCGTTGGCAACGGTGGCCTTGc < 1:207341/149‑1 (MQ=255)
cGGTGGCAGTGATGATCACTTCCAGCTCGGCCAGTTGGGCAGCGCGGCTTTCAGCCGAAGCTTTCTTGTCAGCGGCTGCTTTTTCCAGCTCGGCACGACGCTCTTCGAACGCAGCCAGGTTGGCGGCGTTGGCAACGGTGGCCTTGCCg < 1:347641/149‑1 (MQ=255)
tGGCAGTTATGATCACTTCCAGCTCGGCCAGTTGGGCAGCGCGGCTTTCAGCCGATGCTTTCTTGTCAGCGGCTGCTTTTTCCAGCTCGGCACGACGCTCTTCGAACGCAGCCAGGTTGGCGGCGTTGGCAACGGTGGCCTTGCCGAAt < 7:171721/149‑1 (MQ=255)
aGTGATGATCACTTCCAGCTCGGCCAGTTGGGCAGCGCGGCTTTCAGCCGAAGCTTTCTTGTCAGCGGCTGCTTTTTCCAGCTCGGCACGACGCTCTTCGAACGCAGCCAGGTTGGCGGCGTTGGCAACGGTGGCCTTGCCGAATgg > 7:325880/1‑147 (MQ=255)
gatgatCACTTCCAGCTCGGCCAGTTGGGCAGCGCGGCTTTCAGCCGAAGCTTTCTTGTCAGCGGCTGCTTTTTCCAGCTCGGCACGACGCTCTTCGAACGCAGCCAGGTTGGCGGCGTTGGCAACGGTGGCCTTGCCGAATGgcag > 7:374376/1‑147 (MQ=255)
aTGATCACTTCCAGCTCGGCCAGTTGGGCAGCGCGGCTTTCAGCCGAAGCTTTCTTGTCAGCGGCTGCTTTTTCCAGCTCGGCACGACGCTCTTCGAACGCAGCCAGGTTGGCGGCGTTGGCAACGGTGGCCTTGCCGAATGgcagca < 2:108540/148‑1 (MQ=255)
aTGATCACTTCCAGCTCGGCCAGTTGGGCAGCGCGGCTTTCAGCCGAAGCTTTCTTGTCAGCGGCTGCTTTTTCCAGCTCGGCACGACGCTCTTCGAACGCAGCCAGGTTGGCGGCGTTGGCAACGGTGGCCTTGCCGAATGGcagcag > 5:246446/1‑149 (MQ=255)
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CGCCAACCTGACGGATGGTGCCGTTCGGCAGACGAACTTCAGCCTTGGCCACTTCAACGCCGGAGGCGGTCAGGGCGTCAGCGATGTCGTGGGTGCCGATCGAACCGAACAGCTTGCCTTCGTCGCCAGCGGTGGCAGTGATGGTCACTTCCAGCTCGGCCAGTTGGGCAGCGCGGCTTTCAGCCGAAGCTTTCTTGTCAGCGGCTGCTTTTTCCAGCTCGGCACGACGCTCTTCGAACGCAGCCAGGTTGGCGGCGTTGGCAACGGTGGCCTTGCCGAATGGCAGCAG > NC_002947_CJ‑RC/5545698‑5545986
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| Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
BRESEQ :: bam2aln output
GTATTCGCCAACCTGACGGATGGTGCCGTTCGGCAGACGAACTTCAGCCTTGGCCACTTCAACGCCGGAGGCGGTCAGGGCGTCAGCGATGTCGTGGGTGCCGATCGAACCGAACAGCTTGCCTTCGTCGCCAGCGGTGGCAGTGATGGTCACTTCCAGCTCGGCCAGTTGGGCAGCGCGGCTTTCAGCCGAAGCTTTCTTGTCAGCGGCTGCTTTTTCCAGCTCGGCACGACGCTCTTCGAACGCAGCCAGGTTGGCGGCGTTGGCAACGGTGGCCTTGCCGAATGGCAGCAGG > NC_002947_CJ‑RC/5545693‑5545987
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GTATTCGCCAACCTGACGGATGGTGCCGTTCGGCAGACGAACTTCAGCCTTGGCCACTTCAACGCCGGAGGCGGTCAGGGCGTCAGCGATGTCGTGGGTGCCGATCGAACCGAACAGCTTGCCTTCGTCGCCAGCGGTGGCAGTGATGATC > NB501016:282:H2V7GAFX2:1:21107:5470:13864/1‑151 (MQ=60)
CGCCAACCTGACGGATGGTGCCGTTCGGCAGACGAACTTCAGCCTTGGCCACTTCAACGCCGGAGGCGGTCAGGGCGTCAGCGATGTCGTGGGTGCCGATCGAACCGAACAGCTTGCCTTCGTCGCCAGCGGTGGCAGTGATGATCGCTTC > NB501016:282:H2V7GAFX2:3:11508:20264:14203/1‑151 (MQ=60)
CGCCAACCTGACGGATGGTGCCGTTCGGCAGACGAACTTCAGCCTTGGCCACTTCAACGCCGGAGGCGGTCAGGGCGTCAGCGATGTCGTGGGTGCCGATCGAACCGAACAGCTTGCCTTCGTCGCCAGCGGTGGCAGTGATGATCACTTC > NB501016:282:H2V7GAFX2:2:11202:5550:14822/1‑151 (MQ=60)
CAACCTGACGGATGGTGCCGTTCGGCAGACGAACTTCAGCCTTGGCCACTTCAACGCCGGAGGCGGTCAGGGCGTCAGCGATGTCGTGGGTGCCGATCGAACCGAACAGCTTGCCTTCGTCGCCAGCGGTGGCAGTGATGATCACTTCC > NB501016:282:H2V7GAFX2:3:21610:8200:18701/1‑149 (MQ=60)
AACCTGACGGATGGTGCCGTTCGGCAGACGAACTTCAGCCTTGGCCACTTCAACGCCGGAGGCGGTCAGGGCGTCAGCGATGTCGTGGGTGCCGATCGAACCGAACAGCTTGCCTTCGTCGCCAGCGGTGGCAGTGATGATCACTTCCAGC > NB501016:282:H2V7GAFX2:2:11207:6627:13961/1‑151 (MQ=60)
ACCTGACGGATGGTGCCGTTCGGCAGACGAACTTCAGCCTTGGCCACTTCAACGCCGGAGGCGGTCAGCGCGTCAGCGATGTCGTGGGTGCCGCTCGAACCGAACAGCTTGCCTTCGTCGCCAGCGGTGGCAGTGATGATCACTTCCAGCT > NB501016:282:H2V7GAFX2:4:11605:26729:2585/1‑151 (MQ=60)
GGTGCCGTTCGGCAGACGAACTTCAGCCTTGGCCACTTCAACGCCGGAGGCGGTCAGGGCGTCTGCGATGTCGTGGGTGCCGATCGAACCGAACAGCTTGCCTTCGTCGCCAGCGGTGGCAGTGATGATCACTTCCAGCTCGGCCAGTTG < NB501016:282:H2V7GAFX2:1:11211:1929:10527/150‑1 (MQ=60)
CCGTTCGGCAGACGAACTTCAGCCTTGGCCACTTCAACGCCGGAGGCGGTCAGGGCGTCAGCGATGTCGTGGGTGCCGATCGAACCGAACAGCTTGCCTTCGTCGCCAGCGGTGGCAGTGATGATCACTTCCAGCTCGGCCAGTTGGGCAG < NB501016:282:H2V7GAFX2:2:11307:22164:2400/151‑1 (MQ=60)
CGGCAGACGAACTTCAGCCTTGGCCACTTCAACGCCGGAGGCGGTCAGGGCGTCAGCGATGTCGTGGGTGCCGATCGAACCGAACAGCTTGCCTTCGTCGCCAGCGGTGGCAGTGATGATCACTTCCAGCTCGGCCAGTTGGGCAGCGCGG > NB501016:282:H2V7GAFX2:1:21103:17664:12777/1‑151 (MQ=60)
CAGACGAACTTCAGCCTTGGCCACTTCAACGCCGGAGGCGGTCAGGGCGTCAGCGATGTCGTGGGTGCCGATCGAACCGAACAGCTTGCCTTCGTCGCCAGCGGTGGCAGTGATGATCACTTCCAGCTCGGCCAGTTGGGCAGCGCGGCTT < NB501016:282:H2V7GAFX2:1:21106:26092:3588/151‑1 (MQ=60)
AGACGAACTTCAGCCTTGGCCACTTCAACGCCGGAGGCGGTCAGGGCGTCAGCGATGTCGTGGGTGCCGATCGAACCGAACAGCTTGCCTTCGTCGCCAGCGGTGGCAGTGATGATCACTTCCAGCTCGGCCAGTTCGGCAGCGCGGCTTT > NB501016:282:H2V7GAFX2:4:21510:17509:16793/1‑151 (MQ=60)
CGAACTTCAGCCTTGGCCACTTCAACGCCGGAGGCGGTCAGGGCGTCAGCGATGTCGTGGGTGCCGATCGAACCGAACAGCTTGCCTTCGTCGCCAGCGGTGGCAGTGATGATCACTTCCAGCTCGGCCAGTTGGGCAGCGCGGCTTTC > NB501016:282:H2V7GAFX2:4:21512:26700:4970/1‑149 (MQ=60)
CGAACTTCAGCCTTGGCCACTTCAACGCCGGAGGCGGTCAGGGCGTCAGCGATGTCGTGGGTGCCGATCGAACCGAACAGCTTGCCTTCGTCGCCAGCGGTGGCAGTGATGATCACTTCCAGCTCGGCCAGTTGGGCAGCGCGGCTTTC > NB501016:282:H2V7GAFX2:1:21311:8697:14094/1‑149 (MQ=60)
CGAACTTCAGCCTTGGCCACTACAACGCCGGAGGCGGTCAGGGCGTCAGCGATCTCGTGGGTGCCGATCGAACCGAACAGCTTGCCTTCGTCGCCAGCGGTGGCAGTGATGATCACTTCCAGCTCGGCCAGTTGGGCAGCGCGGCTTTC > NB501016:282:H2V7GAFX2:1:21202:1920:4077/1‑149 (MQ=60)
TGGCCACTTCAACGCCGGAGGCGGTCAGGGCGTCAGCGATGTCGTGGGTGCCGATCGAACCGAACAGCTTGCCTTCGTCGCCAGCGGTGGCAGTGATGATCACTTCCAGCTCGGCCAGTTGGGCAGCGCGGCTTTCAGCCGAAGCTTTCT < NB501016:282:H2V7GAFX2:3:11608:2040:5617/150‑1 (MQ=60)
TGGCCACTTCAACGCCGGAGGCGGTCAGGGCGTCAGCGATGTCGTGGGTGCCGATCGAACCGAACAGCTTGCCTTCGTCGCCAGCGGTGGCAGTGATGATCACTTCCAGCTCGGCCAGTTGGGCAGCGCGGCTTTCAGCCGAAGCTTTC < NB501016:282:H2V7GAFX2:1:21202:6521:14727/149‑1 (MQ=60)
CCACTTCAACGCCGGAGGCGGTCAGGGCGTCAGCGATGTCGTGGGTGCCGATCGAACCGAACAGCTTGCCTTCGTCGCCAGCGGTGGCAGTGATGATCACTTCCAGCTCGGCCAGTTGGGCAGCGCGGCTTTCAGCCGAAGCTTTCTTGTC > NB501016:282:H2V7GAFX2:4:11405:12079:19567/1‑151 (MQ=60)
CCACTTCAACGCCGGAGGCGGTCAGGGCGTCAGCGATGTCGTGGGTGCCGATCGAACCGAACAGCTTGCCTTCGTCGCCAGCGGTGGCAGTGATGATCACTTCCAGCTCGGCCAGTTGGGCAGCGCGGCTTTCAGCCGAAGCTTTCTTGTC < NB501016:282:H2V7GAFX2:1:11301:15905:3438/151‑1 (MQ=60)
CCACTTCAACGCCGGAGGCGGTCAGGGCGTCAGCGATGTCGTGGGTGCCGATCGAACCGAACAGCTTGCCTTCGTCGCCAGCGGTGGCAGTGATGATCACTTCCAGCTCGGCCAGTTGGGCAGCGCGGCTTTCAGCCGAAGCTTTCTTGT > NB501016:282:H2V7GAFX2:2:21105:2122:16941/1‑150 (MQ=60)
TCAACGCCGGAGGCGGTCAGGGCGTCAGCGATGTCGTGGGTGCCGATCGAACCGAACAGCTTGCCTTCGTCGCCAGCGGTGGCAGTGATGATCACTTCCAGCTCGGCCAGTTGGGCAGCGCGGCTTTCAGCCGAAGCTTTCTTGTCAGCGG > NB501016:282:H2V7GAFX2:3:11504:13666:1826/1‑151 (MQ=60)
CAACGCCGGAGGCGGTCAGGGCGTCAGCGATGTCGTGGGTGCCGATCGAACCGAACAGCTTGCCTTCGTCGCCAGCGGTGGCAGTGATGATCACTTCCAGCTCGGCCAGTTGGGCAGCGCGGCTTTCAGCCGAAGCTTTCTTGTCAGCGGC > NB501016:282:H2V7GAFX2:1:21201:9352:12855/1‑151 (MQ=60)
CCGGAGGCGGTCAGGGCGTCGGCGATGTCGTGGGTGCCGATCGAACCGAACAGCTTGCCTTCGTCGCCAGCGGTGGCAGTGATGATCACTTCCAGCTCGGCCAGTTGGGCAGCGCGGCTTTCAG > NB501016:282:H2V7GAFX2:2:11301:10268:4042/1‑124 (MQ=60)
GGCGGTCAGGGCGTCAGCGATGTCGTGGGTGCCGATCGAACCGAACAGCTTGCCTTCGTCGCCAGCGGTGGCAGTGATGATCACTTCCAGCTCGGCCAGTTGGGCAGCGCGGCTTTCCGCCGAAGCTTTCTTGTCAGCGGCTGCTTTTTCC < NB501016:282:H2V7GAFX2:3:21509:19528:15511/151‑1 (MQ=60)
CGGTCAGGGCGTCAGCGATGTCGTGGGTGCCGATCGAACCGAACAGCTTGCCTTCGTCGCCAGCGGTGGCAGTGATGATCACTTCCAGCTCGGCCAGTTGGGCAGCGCGGCTTTCAGCCGAAGCTTTCTTGTCAGCGGCTGCTTTTTCCAG < NB501016:282:H2V7GAFX2:1:11201:23943:3318/151‑1 (MQ=60)
GTCAGGGCGTCAGCGATGTCGTGGGTGCCGATCGAACCGAACAGCTTGCCTTCGTCGCCAGCGGTGGCAGTGATGATCACTTCCAGCTCGGCCAGTTGGGCAGCGCGGCTTTCAGCCGAAGCTTTCTTGTCAGCGGCTGCTTTTTCCAGCT > NB501016:282:H2V7GAFX2:3:11504:16957:8272/1‑151 (MQ=60)
GCGTCAGCGATGTCGTGGGTGCCGATCGAACCGAACAGCTTGCCTTCGTCGCCAGCGGTGGCAGTGATGATCACTTCCAGCTCGGCCAGTTGGGCAGCGCGGCTTTCAGCCGAAGCTTTCTTGTCAGCGGCTGCTTTTTCCAGCTCGGCAC < NB501016:282:H2V7GAFX2:1:11304:6904:3908/151‑1 (MQ=60)
CGTCAGCGATGTCGTGGGTGCCGATCGAACCGAACAGCTTGCCTTCGTCGCCAGCGGTGGCAGTGATGATCACTTCCAGCTCGGCCAGTTGGGCAGCGCGGCTTTCAGCCGAAGCTTTCTTGTCAGCGGCTGCTTTTTCCAGCTCGGCACG < NB501016:282:H2V7GAFX2:2:21112:16816:10710/151‑1 (MQ=60)
GTCAGCGATGTCGTGGGTGCCGATCGAACCGAACAGCTTGCCTTCGTCGCCAGCGGTGGCAGTGATGATCACTTCCAGCTCGGCCAGTTGGGCAGCGCGGCTTTCAGCCGAAGCTTTCTTGTCAGCGGCTGCTTTTTCCAGCTCGGCACG > NB501016:282:H2V7GAFX2:3:21602:1596:8660/1‑150 (MQ=60)
AGCGATGTCGTGGGTGCCGATCGAACCGAACAGCTTGCCTTCGTCGCCAGCGGTGGCAGTGATGATCACTTCCAGCTCGGCCAGTTGGGCAGCGCGGCTTTCAGCCGAAGCTTTCTTGTCAGCGGCTGCTTTTTCCAGCTCGGCACGACGC > NB501016:282:H2V7GAFX2:4:11603:11118:15283/1‑151 (MQ=60)
GGTGTCGTGGGTGCCGATCGAACCGAACAGCTTGCCTTCGTCGCCAGCGGTGGCAGTGATGAACACTTCCAGCTCGGCCAGTTGGGAAGCGCGGCTTTCAGCCGAAGCTTTCTTGTCAGCGGCTGCTTTTTCCAGCTCGGAACGACGCTCT > NB501016:282:H2V7GAFX2:2:21105:7695:16543/1‑151 (MQ=60)
CCGATCGAACCGAACAGCTTGCCTTCGTCGCCAGCGGTGGCAGTGATGATCACTTCCAGCTCGGCCAGTTGGGCAGCGCGGCTTTCAGCCGAAGCTTTCTTGTCAGCGGCTGCTTTTTCCAGCTCGGCACGACGCTCTTCGAACGCAGCCA < NB501016:282:H2V7GAFX2:4:21601:25319:12110/151‑1 (MQ=60)
GATCGAACCGAACAGCTTGCCTTCGTCGCCAGCGGTGGCAGTGATGATCACTTCCAGCTCGGCCAGTTGGGCAGCGCGGCTTTCAGCCGAAGCTTTCTTGTCAGCGGCTGCTTTTTCCAGCTCGGCACGACGCTCTTCGAACGCAGCCAGG > NB501016:282:H2V7GAFX2:3:21403:2000:12507/1‑151 (MQ=60)
TCGAACCGAACAGCTTGCCTTCGTCGCCAGCGGTGGCAGTGATGATCACTTCCAGCTCGGCCAGTTGGGCAGCGCGGCTTTCAGCCGAAGCTTTCTTGTCAGCGGCTGCTTTTTCCAGCTCGGCACGACGCTCTTCGAACGCAGCCAGGTT > NB501016:282:H2V7GAFX2:1:11202:11663:15672/1‑151 (MQ=60)
CGAACCGAACAGCTTGCCTTCGTCGCCAGCGGTGGCAGTGATGATCACTTCCAGCTCGGCCAGTTGGGCAGCGCGGCTTTCAGCCGAAGCTTTCTTGTCAGCGGCTGCTTTTTCCAGCTCGGCACGACGCTCTTCGAACGCAGCCAGGTTG > NB501016:282:H2V7GAFX2:1:11207:4281:6512/1‑151 (MQ=60)
CAGCTTGCCTTCGTCGCCAGCGGTGGCAGTGATGATCACTTCCAGCTCGGCCAGTTGGGCAGCGCGGCTTTCAGCCGAAGCTTTCTTGTCAGCGGCTGCTTTTTCCAGCTCGGCACGACGCTCTTCGAACGCAGCCAGGTTGGCGGCGTTG > NB501016:282:H2V7GAFX2:2:21310:24683:5562/1‑151 (MQ=60)
CAGCTTGCCTTCGTCGCCAGCGGTGGCAGTGATGATCACTTCCAGCTCGGCCAGTTGGGCAGCGCGGCTTTCAGCCGAAGCTTTCTTGTCAGCGGCTGCTTTTTCCAGCTCGGCACGACGCTCTTCGAACGCAGCCAGGTTGGCGGCGTTG < NB501016:282:H2V7GAFX2:2:11109:1663:16021/151‑1 (MQ=60)
CAGCTTGCCTTCGTCGCCAGCGGTGGCAGTGATGATCACTTCCAGCTCGGCCAGTTGGGCAGCGCGGCTTTCAGCCGAAGCTTTCTTGTCAGCGGCTGCTTTTTCCAGCTCGGCACGACGCTCTTCGAACGCAGCCAGGTTGGCGGCGTTG < NB501016:282:H2V7GAFX2:1:11311:4936:7887/151‑1 (MQ=60)
AGCTTGCCTTCGTCGCCAGCGGTGGCAGTGATGATCACTTCCAGCTCGGCCAGTTGGGCAGCGCGGCTTACAGCCGAAGCTTTCTTGTCAGCGGCTGCTTTTTCCAGCTCGGCACGACGCTCTTCGAACGCAGCCAGGTTGGCGGCGTTGG > NB501016:282:H2V7GAFX2:4:11404:14766:12321/1‑151 (MQ=60)
CTTGCCTTCGTCGCCAGCGGTGGCAGTGATGATCACTTCCAGCTCGGCCAGTTGGGCAGCGCGGCTTTCAGCCGAAGCTTTCTTGTCAGCGGCTGTTTTTTCCAGCTCGGCACGACGCTCTTCGAACGCAGCCAGGTTGGCGGCGTTGGC > NB501016:282:H2V7GAFX2:3:21501:15305:14746/1‑150 (MQ=60)
TCGTCGCCAGCGGTGGCAGTGATGATCACTTCCAGCTCGGCCAGTTGGGCAGCGCGGCTTTCAGCCGAAGCTTTCTTGTCAGCGGCTGCTTTTTCCAGCTCGGCACGACGCTCTTCGAACGCAGCCAGGTTGGCGGCGTTGGCAACGGTG < NB501016:282:H2V7GAFX2:4:21607:25200:16377/150‑1 (MQ=60)
CGCCAGCGGTGGCAGTGATGATCACTTCCAGCTCGGCCAGTTGGGCAGCGCGGCTTTCAGCCGAAGCTTTCTTGTCAGCGGCTGCTTTTTCCAGCTCGGCACGACGCTCTTCGAACGCAGCCAGGTTGGCGGCGTTGGCAACGGTGGCCTT > NB501016:282:H2V7GAFX2:1:21108:13202:5783/1‑151 (MQ=60)
GCCAGCGGTGGCAGTGATGATCACTTCCAGCTCGGCCAGTTGGGCAGCGCGGCTTTCAGCCGAAGCTTTCTTGTCAGCGGCTGCTTTTTCCAGCTCGGCACGACGCTCTTCGAACGCAGCCAGGTTGGCGGCGTTGGCAACGGTGGCCTTG < NB501016:282:H2V7GAFX2:2:11101:22345:7874/151‑1 (MQ=60)
GCCAGCGGTGGCAGTGATGATCACTTCCAGCTCGGCCAGTTGGGCAGCGCGGCTTTCAGCCGAAGCTTTCTTGTCAGCGGCTGCTTTTTCCAGCTCGGCACGACGCTCTTCGAACGCAGCCAGGTTGGCGGCGTTGGCAACGGTGGCCTTG > NB501016:282:H2V7GAFX2:1:21108:19335:7159/1‑151 (MQ=60)
GCCAGCGGTGGCAGTGATGATCACTTCCAGCTCGGCCAGTTGGGCAGCGCGGCTTTCAGCCGAAGCTTTCTTGTCAGCGGCTGCTTTTTCCAGCTCGGCACGACGCTCTTCGAACGCAGCCAGGTTGGCGGCGTTGGCAACGGTGGCCTTG > NB501016:282:H2V7GAFX2:1:11208:5038:12846/1‑151 (MQ=60)
CAGCGGTGGCAGTGATGATCACTTCCAGCTCGGCCAGTTGGGCAGCGCGGCTTTCAGCCGAAGCTTTCTTGTCAGCGGCTGCTTTTTCCAGCTCGGCACGACGCTCTTCGAACGCAGCCAGGTTGGCGGCGTTGGCAACGGTGGCCTTGCC < NB501016:282:H2V7GAFX2:1:21103:21348:13847/151‑1 (MQ=60)
GCGGTGGCAGTGATGATCACTTCCAGCTCGGCCAGTTGGGCAGCGCGGCTTTCAGCCGAAGCTTTCTTGTCAGCGGCTGCTTTTTCCAGCTCGGCACGACGCTCTTCGAACGCAGCCAGGTTGGCGGCGTTGGCAACGGTGGCCTTGCCGA < NB501016:282:H2V7GAFX2:1:21307:24188:14160/151‑1 (MQ=60)
GTGGCAGTTATGATCACTTCCAGCTCGGCCAGTTGGGCAGCGCGGCTTTCAGCCGATGCTTTCTTGTCAGCGGCTGCTTTTTCCAGCTCGGCACGACGCTCTTCGAACGCAGCCAGGTTGGCGGCGTTGGCAACGGTGGCCTTGCCGAATG < NB501016:282:H2V7GAFX2:4:11609:10105:4775/151‑1 (MQ=60)
CAGTGATGATCACTTCCAGCTCGGCCAGTTGGGCAGCGCGGCTTTCAGCCGAAGCTTTCTTGTCAGCGGCTGCTTTTTCCAGCTCGGCACGACGCTCTTCGAACGCAGCCAGGTTGGCGGCGTTGGCAACGGTGGCCTTGCCGAATGGC > NB501016:282:H2V7GAFX2:4:21601:5475:15383/1‑149 (MQ=60)
GTGATTATCACTTCCAGCTCGGCCAGTTGGGCAGCGCGGCTTTCAGCCGAAGCTTTCTTGTCAGCGGCTGCTTTTTCCAGCTCGGCACGACGCTCTTCGAACGCAGCCAGGTTGGCGGCGTTGGCAACGGTGGCCTTGCCGAATGGCAGCA < NB501016:282:H2V7GAFX2:3:21411:25539:7206/151‑1 (MQ=60)
TGATGATCACTTCCAGCTCGGCCAGTTGGGCAGCGCGGCTTTCAGCCGAAGCTTTCTTGTCAGCGGCTGCTTTTTCCAGCTCGGCACGACGCTCTTCGAACGCAGCCAGGTTGGCGGCGTTGGCAACGGTGGCCTTGCCGAATGGCAGC > NB501016:282:H2V7GAFX2:4:21611:18548:3449/1‑149 (MQ=60)
GATGATCACTTCCAGCTCGGCCAGTTGGGCAGCGCGGCTTTCAGCCGAAGCTTTCTTGTCAGCGGCTGCTTTTTCCAGCTCGGCACGACGCTCTTCGAACGCAGCCAGGTTGGCGGCGTTGGCAACGGTGGCCTTGCCGAATGGCAGCAGG > NB501016:282:H2V7GAFX2:3:21412:19122:6852/1‑151 (MQ=60)
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GTATTCGCCAACCTGACGGATGGTGCCGTTCGGCAGACGAACTTCAGCCTTGGCCACTTCAACGCCGGAGGCGGTCAGGGCGTCAGCGATGTCGTGGGTGCCGATCGAACCGAACAGCTTGCCTTCGTCGCCAGCGGTGGCAGTGATGGTCACTTCCAGCTCGGCCAGTTGGGCAGCGCGGCTTTCAGCCGAAGCTTTCTTGTCAGCGGCTGCTTTTTCCAGCTCGGCACGACGCTCTTCGAACGCAGCCAGGTTGGCGGCGTTGGCAACGGTGGCCTTGCCGAATGGCAGCAGG > NC_002947_CJ‑RC/5545693‑5545987
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| Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 0 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
