Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A1 F64 I1 R1
|
60 |
70.4 |
2989830 |
98.5% |
2944982 |
146.7 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| RA |
NC_002947_CJ‑RC |
5,677,568 |
G→C |
intergenic (+115/+25) |
rhlE‑II → / ← yceI |
ATP‑dependent RNA helicase/polyisoprene‑binding acidic stress response factor |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NC_002947_CJ‑RC | 5,677,568 | 0 | G | C | 98.7%
| 279.2
/ NA
| 78 | intergenic (+115/+25) | rhlE‑II/yceI | ATP‑dependent RNA helicase/polyisoprene‑binding acidic stress response factor |
| Reads supporting (aligned to +/- strand): ref base G (0/0); major base C (43/34); minor base A (1/0); total (44/34) |
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 |
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 |
AGCGCTGCTGACCCGCAAGGGCTGATAGAAGTACCGAGGGGGCTGCTTCGCAGCCCTATCACGACACAAGGCCGCTCCTGCAGAGAATTTCTTGATCTCTACAGGAGCGGCCTTGTGTCGTGATAGGGCCGCAAAG‑C‑GCGCCCTCGGTTTTCAGCTGGCAGAAATTACTTCTGCTTCACACCTTCGACACTGATATCCAGGTCCAGGGTCTGCGAAGTAGCACCCGGGCCTTTGATGCCGAAGTCGTTCAGGTTCAGCGTGGTGGTGGCGTTGAAGCCA > NC_002947_CJ‑RC/5677429‑5677707
|
aGCGCTGCTGACCCGCAAGGGCTGATAGAAGTACCGAGGGGGCTGCTTCGCAGCCCTATCACGACACAAGGCCGCTCCTGCAGAGAATTTCTTGATCTCTACAGGAGCGGCCTTGTGTCGTGATAGGGCCGCAAAG‑CGGCCCCCTCGGt > 5:148980/1‑149 (MQ=255)
ctgACCCGCAAGGGATGTTATATGTACCGTGGGGGCTGCTTCGAAGCCCTATCACGACACATGGCCGCTCCTGCAGATAATTTCTTGATATCTACAGGAGCGGCCTTGTGTCGTTATTGGGCCGCAAAG‑CGGCCCCCTCGGTTTTCAGc < 8:329479/149‑1 (MQ=25)
ccGCAAGGGCTGATAGAAGTACCGAGGGGGCTGCTTCGCAGCCCTATCACGACACAAGGCCGCTCCTGCAGAGAATTTCTTGATCTCTACAGGAGCGGCCTTGTGTCGTGATAGGGCCGCAAAG‑CGGCCCCCTCGGTTTTCAGCTgg > 2:284739/1‑147 (MQ=255)
ccGCAAGGGCTGATAGAAGTACCGAGGGGGCTGCTTCGCAGCCCTATCACGACACAAGGCCGCTCCTGCAGAGAATTTCTTGATCTCTAAAGGAGCGGCCTTGTGTCGTGATAGGGCCGCAAAG‑CGGCCCCCTCGGTTTTCAGCTgg > 6:105731/1‑147 (MQ=255)
tGATAGAAGTACCGAGGGGGCTGCTTCGCAGCCCTATCACGACACAAGGCCGCTCCTGCAGAGAATTTCTTGATCTCTACAGGAGCGGCCTTGTGTCGTGATAGGGCCGCAAAG‑CGGCCCCCTCGGTTTTCAGCTGGCAGATATTACtt < 4:298705/149‑1 (MQ=255)
aTAGAAGTACCGAGGGGGCTGCTTCGCAGCCCTATCACGACACAAGGCCGCTCCTGCAGAGAATTTCTTGATCTCTACAGGAGCGGCCTTGTGTCGTGATAGGGCCGCAAAG‑CGGCCCCCTCGGTTTTCAGCTGGCAGAAATTACtt < 7:239380/147‑1 (MQ=255)
aTAGAAGTACCGAGGGGGCTGCTTCGCAGCCCTATCACGACACAAGGCCGCTCCTGCAGAGAATTTCTTGATCTCTACAGGAGCGGCCTTGTGTCGTGATAGGGCCGCAAAG‑CGGCCCCCTCGGTTTTCAGCTGGCAGAAATTACtt < 2:195812/147‑1 (MQ=255)
aTAGAAGTACCGAGGGGGCTGCTTCGCAGCCCTATCACGACACAAGGCCGCTCCTGCAGAGAATTTCTTGATCTCTACAGGAGCGGCCTTGTGTCGTGATAGGGCCGCAAAG‑CGGCCCCCTCGGTTTTCAGCTGGCAGAAATTACtt < 2:212835/147‑1 (MQ=255)
gAAGTACCGAGGGGGCTGCTTCGCAGCCCTATCACGACACAAGGCCGCTCCTGCAGAGAATTTCTTGATCTCTACAGGAGCGGCCTTGTGTCGTGATAGGGCCGCAAAG‑CGGCCCCCTCGGTTTTCAGCTGGCAGAAATTACTTCTGc < 8:382863/148‑1 (MQ=255)
cGAGGGGGCTGCTTCGCAGCCCTATCACGACACAAGGCCGCTCCTGCAGAGAATTTCTTGATCTCTACAGGAGCGGCCTTGTGTCGTGATAGGGCCGCAAAG‑CGGCCCCCTCGGTTTTCAGCTGGCAGAAATTACTTCTGCTTCacac > 6:23743/1‑148 (MQ=255)
cGAGGGGGCTGCTTCGCAGCCCTATCACGACACAAGGCCGCTCCTGCAGAGAATTTCTTGATCTCTACAGGAGCGGCCTTGTGTCGTGATAGGGCCGCAAAG‑CGGCCCCCTCGGTTTTCAGCTGGCAGAAATTACTTCTGCTTCACAcc < 4:307141/149‑1 (MQ=255)
gggggCTGCTTCGCAGCCCTATCACGACACAAGGCCGCTCCTGCAGAGAATTTCTTGATCTCTACAGGAGCGGCCTTGTGTCGTGATAGGGCCGCAAAG‑CGGCCCCCTCGGTTTTCAGCTGGCAGAAATTACTTCTGCTTCACACCTTc < 7:162051/149‑1 (MQ=255)
gggggCTGCTACGCAGCCCAACCACCACACAAGGCCGCTCCTGCAGAGAATTTCTTCACCTCTACCGGCGCGGCCTTGTGTCGTGATAGGGCCGCAAAG‑CGGCCCCCTCGGTTTTCAGCTGGCAGAAATTACTTCTGCTTCACACCTTc < 3:206649/149‑1 (MQ=37)
ggggaCTTCTTCGCATCCCTATCACGACACAATGCCGCTCCTGCAGAGAATTTCTTGATCTCTACAGGAGCTGCCTTGTGTCTTGATAGGGCCGCAAAG‑CGGCCCCCTCGGTTTTCAGCTGGCAGAAATTACTTCTGCTTCACACCTTc < 3:104216/149‑1 (MQ=255)
ggCTGCTTCGCAGCCCTATCACGACACAAGGCCGCTCCTGCAGAGAATTTCTTGATCTCTACAGGAGCGGCCTTGTGTCGTGATAGGGCCGCAAAG‑CGGCCCCCTCGGTTTTCAGCTGGCAGAAATTACTTCTGCTTCACACCTTCGac < 8:79240/149‑1 (MQ=255)
ttCGCAGCCCTATCACGACACAAGGCCGCTCCTTCAGAGAATTTCTTGATCTATACAGGAGCGGCCTTGTGTCGTGAAAGGGCCGCAAAG‑CGGCCCCCAAGGGTTTCAGCTGGCAGAAATTAATAAAGCATCACAACTTCGTCACTGa > 8:133612/1‑148 (MQ=25)
ttCGCAGCCCTATCACGACACAAGGCCGCTCCTGCAGAGAATTTCTTGATCTCTACAGGAGCGGCCTTGTGTCGTGATAGGGCCGCAAAG‑CGGCCCCCTCGGTTTTCAGCTGGCAGAAATTACTTCTGCTTCACACCTTCGACACTGat < 5:5769/149‑1 (MQ=255)
ttCGCAGCCCTATCACGACACAAGGCCGCTCCTGCAGAGAATTTCTTGATCTCTACAGGAGCGGCCTTGTGTCGTGATAGGGCCGCAAAG‑CGGCCCCCTCGGTTTTCAGCTGGCAGAAATTACTTCTGCTTCACACCTTCGACACTGa > 6:337187/1‑148 (MQ=255)
ttCGCAGCCCTATCACGACACAAGGCCGCTCCTGCAGAGAATTTCTTGATCTCTACAGGAGCGGCCTTGTGTCGTGATAGGGCCGCAAAG‑CGGCCCCCTCGGTTTTCAGCTGGCAGAAATTACTTCTGCTTCACACCTTCGACACTGa > 2:4563/1‑148 (MQ=255)
cGCAGCCCTATCACGACACAAGGCCGCTCCTGCAGAGAATTTCTTGATCTCTACAGGAGCGGCCTTGTGTCGTGATAGGGCCGCAAAG‑CGGCCCCCTCGGTTTTCAGCTGGCAGAAATTACTTCTGCTTCACACCTTCGACACTGat < 5:96362/147‑1 (MQ=255)
gCAGCCCTATCACGACACAAGGCCGCTCCTGCAGAGAATTTCTTGATCTCTACAGGAGCGGCCTTGTGTCGTGATAGGGCCGCAAAG‑CGGCCCCCTCGGTGTTCAGCTGGGAGAAATTACTTCTGCTTCACACCTTCGACACTGATAtc > 1:128870/1‑149 (MQ=37)
cccTATCACGACACAAGGCCGCTCCTGCAGAGAATTTCTTGATCTCTACAGGAGCGGCCTTGTGTCGTGATAGGGCCGCAAAG‑CGGCCCCCTCGGTTTTCAGCTGGCAGAAATTACTTCTGCTTCACACCTTCGACACTGATAtccagg > 2:216787/1‑149 (MQ=255)
cccTATCACGACACAAGGCCGCTCCTGCAGAGAATTTCTTGATCTCTACAGGAGCGGCCTTGTGTCGTGATAGGGCCGCAAAG‑CGGCACCCTCGGTTTTAAGCTGGCAGAAATTACTTCTGCTTCACACCTTCGACACTGATAtccagg > 6:294654/1‑149 (MQ=255)
ccTATCACGACACAAGGCCGCTCCTGCAGAGAATTTCTTGATCTCTACAGGAGCGGCCTTGTGTCGTGATAGGGCCGCAAAG‑CGGCCCCCTCGGTTTTCAGCTGGCAGAAATTACTTCTGCTTCACACCTTCGACACTGATAtccaggt > 8:138590/1‑149 (MQ=255)
cTATCACGACACAAGGCCGCTCCTGCAGAGAATTTCTTGATCTCTACAGGAGCGGCCTTGTGTCGTGATAGGGCCGCAAAG‑CGGCCCCCTCGGTTTTCAGCTGGCAGAAATTACTTCTGCTTCACACCTTCGACACTGATAtccaggtc > 7:211187/1‑149 (MQ=255)
cTATCACGACACAAGGCCGCTCCTGCAGAGAATTTCTTGATCTCTACAGGAGCGGCCTTGTGTCGTGATAGGGCCGCAAAG‑CGGCCCCCTCGGTTTTCAGCTGGCAGAAATTACTTCTGCTTCACACCTTCGACACTGATAtccaggtc > 2:3203/1‑149 (MQ=255)
tATCACGACACAAGGCCGCTCCTGCAGAGAATTTCTTGATCTCTACAGGAGCGGCCTTGTGTCGTGATAGGGCCGCAAAG‑CGGCCCCCTCGGTTTTCAGCTGGCAGAAATTACTTCTGCTTCACACCTTCGACACTGATAtccaggtc > 8:161247/1‑148 (MQ=255)
cACGACACAAGGCCGCTCCTGCAGAGAATTTCTTGATCTCTACAGGAGCGGCCTTGTGTCGTGATAGGGCCGCAAAG‑CGGCCCCCTCGGTTTTCAGCTGGCAGAAATTACTTCTGCTTCACACCTTCGACACTGATAtccaggtccagg < 5:23743/149‑1 (MQ=255)
aCGACACAAGGCCGCTCCTGCAGAGAATTTCTTGATCTCTACAGGAGCGGCCTTGTGTCGTGATAGGGCCGCAAAG‑CGGCCCCCTCGGTTTTCAGCTGGCAGAAATTACTTCTGCTTCACACCTTCGACACTGATAtccaggtccagg < 8:272890/148‑1 (MQ=255)
aCGACACAAGGCCGCTCCTGCAGAGAATTTCTTGATCTCTACAGGAGCGGCCTTGTGTCGTGATAGGGCCGCAAAG‑CGGCCCCCTCGGTTTTCAGCTGGCAGAAATTACTTCTGCTTCACACCTTCGACACTGATAtccaggtccagg < 2:301886/148‑1 (MQ=255)
gACACAAGGCCGCTCCTGCAGAGAATTTCTTGATCTCTACAGGAGCGGCCTTGTGTCGTGATAGGGCCGCAAAG‑CGGCCCCCTCGGGTTTCAGCTGGCAGAAATTACTTATGCTTCACACCTTCGACACGGATATCCAGGTCCAGGGTc > 4:197892/1‑149 (MQ=38)
cacaAGGCCGCTCCTGCAGAGAATTTCTTGATCTCTACAGGAGCGGCCTTGTGTCGTGATAGGGCCGCAAAG‑CGGCCCCCTCGGTTTTCAGCTGGCAGAAATTACTTCTGCTTCACACCTTCGACACTGATATCCAGGTCCAGGGTCTg < 2:39495/149‑1 (MQ=255)
cacaAGGCCGCACCAGCAGAGAATTTCTTGATCTCTACAGGAACCGCCTTGTGTCGTGATAGGGCCGCAAAGAC‑GCCCCCTCGGTTTTCAGCTGGCAGAAAATAATTATGCTTCACACCTTCGACACTGATATCCAGGTCCAGGGTCTg > 6:63110/1‑149 (MQ=255)
aaGGCCGCTCCTGCAGAGAATTTCTTGATCTCTACAGGAGCGGCCTTGTGTCGTGATAGGGCCGCAAAG‑CGGCCCCCTCGGTTTTCAGCTGGCAGAAATTACTTCTGCTTCACACCTTCGACACTGATATCCAGGTCCAGGGTCTGCg > 1:315879/1‑148 (MQ=255)
gCCGCTCCTGCAGAGAATTTCTTGATCTCTACAGGAGCGGCCTTGTGTCGTGATAGGGCCGCAAAG‑CGGCCCCCTCGGTTTTCAGCTGGCAGAAATTACTTCTGCTTCACACCTTCGACACTGATATCCAGGTCCAGGGTCTGCGAAGt < 8:340009/149‑1 (MQ=255)
ccGCTCCTGCAGAGAATTTCTTGATCTCTACAGGAGCGGCCTTGTGTCGTGATAGGGCCGCAAAG‑CGGCCCCCTCGGTTTTCAGCTGGCAGAAATTACTTCTGCTTCACACCTTCGACACTGATATCCAGGTCCAGGGTCTGCGAAGTa < 4:291777/149‑1 (MQ=255)
ccGCTCCTGCAGAGAATTTCTTGATCTCTACAGGAGCGGCCTTGTGTCGTGATAGGGCCGCAAAG‑CGGCCCCCTCGGTTTTCAGCTGGCAGAAATTACTTCTGCTTCACACCTTCGACACTGATATCCAGGTCCAGGGTCTGCGAAGTa < 7:33289/149‑1 (MQ=255)
cAGAGAATTTCTTGATCTCTACAGGAGCGGCCTTGTGTCGTGATAGGGCCGCAAAG‑CGGCCCCCTCGGTTTTCAGCTGGCAGAAATTACTTCTGCTTCACACCTTCGACACTGATATCCAGGTCCAGGGTCTGCGAAGTAGCACCCggg > 2:78120/1‑149 (MQ=255)
gagaATTTCTTGATCTCTACAGGAGCGGCCTTGTGTCGTGATAGGGCCGCAAAG‑CGGCCCCCTCGGTTTTCAGCTGGCAGAAATTACTTCTGCTTCACACCTTCGACACTGATATCCAGGTCCAGGGTCTGCGAAGTAGCACCCGGGcc < 5:170493/149‑1 (MQ=255)
agaATTTCTTGATCTCTACAGGAGCGGCCTTGTGTCGTGATAGGGCCGCAAAG‑CGGCCCCCTCGGTTTTCAGCTGGCAGAAATTACTTCTGCTTCACACCTTCGACACTGATATCCAGGTCCAGGGTCTGCGAAGTAGCACCCGGGCCt > 8:138357/1‑149 (MQ=255)
aTTTCTTGATCTCTACAGGAGCGGCCTTGTGTCGTGATAGGGCCGCAAAG‑CGGCCCCCTCGGTTTTCAGCTGGCAGAAATTACTTCTGCTTCACACCTTCGACACTGATATCCAGGTCCAGGGTCTGCGAAGTAGCACCCGGGCCttt < 5:105731/148‑1 (MQ=255)
tttCTTGATCTCTACAGGAGCGGCCTTGTGTCGTGATAGGGCCGCAAAG‑CGGCCCCCTCGGTTTTCAGCTGGCAGAAATTACTTCTGCTTCACACCTTCGACACTGATATCCAGGTCCAGGGTCTGCGAAGTAGCACCCGGGCCttgat < 3:361347/149‑4 (MQ=255)
tttCTTGATCTCTACAGGAGCGGCCTTGTGTCGTGATAGGGCCGCAAAG‑CGGCCCCCTCGGTTTTCAGCTGGCAGAAATTACTTCTGCTTCACACCTTCGACACTGATATCCAGGTCCAGGGTCTGCGAAGTAGCACCCGGGCCTTTGa > 5:40319/1‑149 (MQ=255)
gATCTCTACAGGAGCGGCCTTGTGTCGTGATAGGGCCGCAAAG‑CGGCCCCCTCGGTTTTCAGCTGGCAGAAATTACTTCTGCTTCACACCTTCGACACTGATATCCAGGTCCAGGGTCTGCGAAGTAGCACCCGGGCCTTTGATGc < 1:78120/146‑1 (MQ=255)
gATCTCTACAGGAGCGGCCTTGTGTCGTGATAGGGCCGCAAAG‑CGGCCCCCTCGGTTTTCAGCTGGCAGAAATTACTTCTGCTTCACACCTTCGACACTGATATCCAGGTCCAGGGTCTGCGAAGTAGCACCCGGGCCTTTGATGCCg < 8:211187/148‑1 (MQ=255)
gATCTCTACAGGAGCGGCCTTGTGTCGTGATAGGGCCGCAAAG‑CGGCCCCCTCGGTTTTCAGCTGGCAGAAATTACTTCTGCTTCACACCTTCGACACTGATATCCAGGTCCAGGGTCTGCGAAGTAGCACCCGGGCCTTTGATGCCg > 6:126626/1‑148 (MQ=255)
aTCTCTACAGGAGCGGCCTTGTGTCGTGATAGGGCCGCAAAG‑CGGCCCCCTCGGTTTTCAGCTGGCAGAAATTACTTCTGCTTCACACCTTCGACACTGATATCCAGGTCCAGGGTCTGCGAAGTAGCACCCGGGCCTTTGATGCCGa < 5:307016/148‑1 (MQ=255)
aTCTCTACAGGAGCGGCCTTGTGTCGTGATAGGGCCGCAAAG‑CGGCCCCCTCGGTTTTCAGCTGGCAGAAATTACTTCTGCTTCACACCTTCGACACTGATATCCAGGTCCAGGGTCTGCGAAGTAGCACCCGGGCCTTTGATGCCGa < 5:118959/148‑1 (MQ=255)
aTCTCTACAGGAGCGGCCTTGTGTCGTGATAGGGCCCCAAAG‑CGGCCCCCTCCGTTTTCAGCTGGCAGAAATTACTTCTGCTTCACACATTCGACACTGAAATCCAGGTCCAGGGTCTGCGAAGTAGCACCCGGGCCTTTGATGCCg > 6:253824/1‑147 (MQ=39)
tctACAGGAGCGGCCTTGTGTCGTGATAGGGCCGCAAAG‑CGGCCCCCTCGGTTTTCAGCTGGCAGAAATTACTTCTGCTTCACACCTTCGACACTGATATCCAGGTCCAGGGTCTGCGAAGTAGCACCCGGGCCTTTGATGCCGAAGTc > 5:46546/1‑149 (MQ=255)
ctACAGGAGCGGCCTTGTGTCGTGATAGGGCCGCAAAG‑CGGCCCCCTCGGTTTTCAGCTGGCAGAAATTACTTCTGCTTCACACCTTCGACACTGATATCCAGGTCCAGGGTCTGCGAAGTAGCACCCGGGCCTTTGATGCCGAAGTCg > 1:25584/1‑149 (MQ=255)
ctACAGGAGCGGCCTTGTGTCGTGATAGGGCCGCAAAG‑CGGCCCCCTCGGTTTTCAGCTGGCAGAAATTACTTCTGCTTCACACCTTCGACACTGATATCCAGGTCCAGGGTCTGCGAAGTAGCACCCGGGCCTTTGATGCCGAAGTCg > 2:243439/1‑149 (MQ=255)
cAGGAGCGGCCTTGTGTCGTGATAGGGCCGCAAAG‑CGGCCCCCTCGGTTTTCAGCTGGCAGAAATTACTTCTGCTTCACACCTTCGACACTGATATCCAGGTCCAGGGTCTGCGAAGTAGCACCCGGGCCTTTGATGCCGAAGTCg < 7:34882/146‑1 (MQ=255)
cAGGAGCGGCCTTGTGTCGTGATAGGGCCGCAAAG‑CGGCCCCCACGGTTTTCAGCAGGCAGAAATTAATTATGCATAACACCTTCGACACAGATATCCAGGTCCAGGGTCAGCCAAGTAGCACCCGGGCCTTTGATGCCGAAGTCgtt > 3:298063/1‑148 (MQ=37)
ggAGCGGCCTTGTGTCGTGATAGGGCCGCAAAG‑CGGCCCCCTCGTTTTTCAGCTGGCAGAAATTACTTCTGCTTCACACCTTCGACACTGATATCCAGGTCCAGGGTCTGCGAAGTAGCACCCGGGCCTTTGATGCCGAAGTCgttcag < 2:315879/149‑1 (MQ=255)
gCCTTGTGTCGTGATAGGGCCGCAAAG‑CGGCCCCCTCGGTTTTCAGCTGGCAGAAATTACTTCTGCTTCACACCTTCGACACTGATATCCAGGTCCAGGGTCTGCGAAGTAGCACCCGGGCCTTTGATGCCGAAGTCgttcaggatcag > 8:30058/1‑149 (MQ=255)
ttGTGTCGTGATAGGGCCGCAAAG‑CGGCCCCCTCGGTTTTCAGCTGGCAGAAATTACTTCTGCTTCACACCTTCGACACTGATATCCAGGTCCAGGGTCTGCGAAGTAGCACCCGGGCCTTTGATGCCGAAGTCGTTCAGGTTCAGCgt > 2:220540/1‑149 (MQ=255)
gtCGTGATAGGGCCGCAAAG‑CGGCCCCCTCGGTTTTCAGCTGGCAGAAATTACTTCTGCTTCACACCTTCGACACTGATATCCAGGTCCAGGGTCTGCGAAGTAGCACCCGGGCCTTTGATGCCGAAGTCGTTCAGGTTCAGCgtggtg > 1:270051/1‑149 (MQ=255)
tCGTGATAGGGCCGCAAAG‑CGGCCCCCTCGGTTTTCAGCTGGCAGAAATTACTTCTGCTTCACACCTTCGACACTGATATCCAGGTCCAGGGTCTGCGAAGTAGCACCCGGGCCTTTGATGCCGAAGTCGTTCAGGTTCAGCgtggtgg > 6:220055/1‑149 (MQ=255)
tCGTGATAGGGCCGCAAAG‑CGGCCCCCTCGGTTTTCAGCTGGCAGAAATTACTTCTGCTTCACACCTTCGACACTGATATCCAGGTCCAGGGTCTGCGAAGTAGCACCCGGGCCTTTGATGCCGAAGTCGTTCAGGTTCAGCgtggtgg > 6:282065/1‑149 (MQ=255)
gTGATAGGGCCGCAAAG‑CGGCCCCCTCGGTTTTCAGCTGGCAGAAATTACTTCTGCTTCACACCTTCGACACTGATATCCAGGTCCAGGGTCTGCGAAGTAGCACCCGGGCCTTTGATGCCGAAGTCGTTCAGGTTCAGCgtggtggtg > 1:258186/1‑149 (MQ=255)
gTGATAGGGCCGCAAAG‑CGGCCCCCTCGGTTTTCAGCTGGCAGAAATTACTTCTGCTTCACACCTTCGACACTGATATCCAGGTCCAGGGTCTGCGAAGTAGCACCCGGGCCTTTGATGCCGAAGTCGTTCAGGTTCAGCgtggtggtg > 8:102437/1‑149 (MQ=255)
tGATAGGGCCGCAAAG‑CGGCCCCCTCGGTTTTCAGCTGGCAGAAATTACTTCTGCTTCACACCTTCGACACTGATATCCAGGTCCAGGGTCTGCGAAGTAGCACCCGGGCCTTTGATGCCGAAGTCGTTCAGGTTCAGCGtggtggtgg > 8:81736/1‑149 (MQ=255)
tGATAGGGCCGCAAAG‑CGGCCCCCTCGGTTTTCAGCTGGCAGAAATTACTTCTGCTTCACACCTTCGACACTGATATCCAGGTCCAGGGTCTGCGAAGTAGCACCCGGGCCTTTGATGCCGAAGTCGTTCAGGTTCAGCGtggtggtgg > 8:141012/1‑149 (MQ=255)
tGATAGGGCCGCAAAG‑CGGCCCCCTCGGTTTTCAGCTGGCAGAAATTACTTCTGCTTCACACCTTCGACACTGATATCCAGGTCCAGGGTCTGCGAAGTAGCACCCGGGCCTTTGATGCCGAAGTCGTTCAGGTTCAGCGtggtggtgg > 3:262939/1‑149 (MQ=255)
tGATAGGGCCGCAAAG‑CGGCCCCCTCGGTTTTCAGCTGGCAGAAATTACTTCTGCTTCACACCTTCGACACTGATATCCAGGTCCAGGGTCTGCGAAGTAGCACCCGGGCCTTTGATGCCGAAGTCGTTCAGGTTCAGCGtggtggtgg > 5:303229/1‑149 (MQ=255)
gggCCGCAAAG‑CGGCCCCCTCGGTTTTCAGCTGGCAGAAATTACTTCTGCTTCACACCTTCGACACTGATATCCAGGTCCAGGGTCTGCGAAGTAGCACCCGGGCCTTTGATGCCGAAGTCGTTCAGGTTCAGCGTGGTGGTGGCGTTg < 4:58836/149‑1 (MQ=255)
ggCCGCAAAG‑CGGCCCCCTCGGTTTTCAGCTGGCAGAAATTACTTCTGCTTCACACCTTCGACACTGATATCCAGGTCCAGGGTCTGCGAAGTAGCACCCGGGCCTTTGATTCCGAAGTCGTTCAGGTTCAGCGTGGTGGTGGCGTTg > 2:206140/1‑148 (MQ=255)
gCCGCAAAG‑CGGCCCCCTCGGTTTTCAGCTGGCAGAAATTACTTCTGCTTCACACCTTCGACACTGATATCCAGGTCCAGGGTCTGCGAAGTAGCACCCGGGCCgttta > 2:341893/1‑107 (MQ=255)
gCCGCAAAG‑CGGCCCCCTCGGTTTTCAGCTGGCAGAAATTACTTCTGCTTCACACCTTCGACACTGATATCCAGGTCCAGGGTCTGCGAAGTAGCACCCGGGCCTTTTATGCCGAAGTCGTTCAGGTTCAGCGTGGTGGTGGCGTTGaa < 5:63110/149‑1 (MQ=255)
gCCGCAAAG‑CGGCCCCCTCGGTTTTCAGCTGGCAGAAATTACTTCTGCTTCACACCTTCGACACTGATATCCAGGTCCAGGGTCTGCGAAGTAGCACCCGGGCCTTTGATGCCGAAGTCGTTCAGGTTCAGCGTGGTGGTGGCGTTg > 3:42868/1‑147 (MQ=255)
gCCGCAAAG‑CGGCCCCCTCGGTTTTCAGCTGGCAGAAATTACTTCTGCTTCACACCTTCGACACTGATATCCAGGTCCAGGGTCTGCGAAGTAGCACCCGGGCCTTTGATGCCGAAGTCGTTCAGGTTCAGCGTGGTGGTGGCGTTg > 8:350448/1‑147 (MQ=255)
gCCGCAAAG‑CGGCCCCCTCGGTTTTCAGCTGGCAGAAATTACTTCTGCTTCACACCTTCGACACTGATATCCAGGTCCAGGGTCTGCGAAGTAGCACCCGGGCCTTTGATGCCGAAGTCGTTCAGGTTCAGCGTGGTGGTGGCGTTGaa < 5:220055/149‑1 (MQ=255)
gCCGCAAAG‑CGGCCCCCTCGGTTTTCAGCTGGCAGAAATTACTTCTGCTTCACACCTTCGACACTGATATCCAGGTCCAGGGTCTGCGAAGTAGCACCCGGGCCTTTGATGCCGAAGTCGTTCAGGTTCAGCGTGGTGGTGGCGTTGaa < 7:106221/149‑1 (MQ=255)
cGCAAAG‑CGGCCCCCTCGGTTTTCAGCTGGCAGAAATTACTTCTGCTTCACACCTTCGACACTGATATCCAGGTCCAGGGTCTGCGAAGTAGCACCCGGGCCTTTGATGCCGAAGTCGTTCAGGTTCAGCGTGGTGGTGGCGTTGAAGc > 7:64083/1‑149 (MQ=255)
gCAAAG‑CGGCCCCCTCGGTTTTCAGCTGGCAGAAATTACTTCTGCTTCACACCTTCGACACTGATATCCAGGTCCAGGGTCTGCGAAGTAGCACCCGGGCCTTTGATGCCGAAGTCGTTCAGGTTCAGCGTGGTGGTGGCGTTGAAGc > 4:190993/1‑148 (MQ=255)
gCAAAG‑CGGCCCCCTCGGTTTTCAGCTGGCAGAAATTACTTCTGCTTCACACCTTCGACACTGATATCCAGGTCCAGGGTCTGCGAAGTAGCACCCGGGCCTTTGATGCCGAAGTCGTTCAGGTTCAGCGTGGTGGTGGCGTTGAAGc > 5:58001/1‑148 (MQ=255)
cAAAG‑CGGCCCCCTCGGTTTTCAGCTGGCAGAAATTACTTCTGCTTCACACCTTCGACACTGATATCCAGGTCCAGGGTCTGCTAAGTAGCACCCGGGCCTTTGATGCCGAAGTCGTTCAGGTTCTGCGTGGTGGTGGCGTTGAAGCCa < 7:31956/149‑1 (MQ=255)
|
AGCGCTGCTGACCCGCAAGGGCTGATAGAAGTACCGAGGGGGCTGCTTCGCAGCCCTATCACGACACAAGGCCGCTCCTGCAGAGAATTTCTTGATCTCTACAGGAGCGGCCTTGTGTCGTGATAGGGCCGCAAAG‑C‑GCGCCCTCGGTTTTCAGCTGGCAGAAATTACTTCTGCTTCACACCTTCGACACTGATATCCAGGTCCAGGGTCTGCGAAGTAGCACCCGGGCCTTTGATGCCGAAGTCGTTCAGGTTCAGCGTGGTGGTGGCGTTGAAGCCA > NC_002947_CJ‑RC/5677429‑5677707
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
BRESEQ :: bam2aln output
CAGCGCTGCTGACCCGCAAGGGCTGATAGAAGTACCGAGGGGGCTGCTTCGCAGCCCTATCACGACACAAGGCCGCTCCTGCAGAGAATTTCTTGATCTCTACAGGAGCGGCCTTGTGTCGTGATAGGGCCGCAAAGC‑GCGCC‑‑CTCGGTTTTCAGCTGGCAGAAATTACTTCTGCTTCACACCTTCGACACTGATATCCAGGTCCAGGGTCTGCGAAGTAGCACCCGGGCCTTTGATGCCGAAGTCGTTCAGGTTCAGCGTGGTGGTGGCGTTGAAGCCAGCG > NC_002947_CJ‑RC/5677428‑5677710
|
CAGCGCTGCTGACCCGCAAGGGCTGATAGAAGTACCGAGGGGGCTGCTTCGCAGCCCTATCACGACACAAGGCCGCTCCTGCAGAGAATTTCTTGATCTCTACAGGAGCGGCCTTGTGTCGTGATAGGGCCGCAAAGCGGCCCC‑‑CTCGGTT > NB501016:282:H2V7GAFX2:3:11605:16441:6510/1‑151 (MQ=60)
GTGACCCGCACGGGCTGATCGACGTACCGAGGGGGCGGCTTCGCAGCCCTAGCACGACACAAGGCCGCTCCTGCAGAGAATTTCTTGATCTCTACAGGAGCGGCCTTGTGTCGTGATAGGGCCGCAAAGCGGCCCC‑‑CTCGGTTTTCAGCTG < NB501016:282:H2V7GAFX2:3:11402:3098:16709/151‑1 (MQ=60)
gctttacgacgtacggtgggggcggctgcgccgccctaccaccacacacggccgcgccgccagacAATTTCTTTATCTCTACTGGCGGGGCCTTGTGTCGTTATAGGGCCGCAAAGCGGCCCC‑‑CGCGGTTTTCAGCTGGCAGAAATTACTT < NB501016:282:H2V7GAFX2:2:11204:7814:16713/86‑1 (MQ=39)
GATAGAAGTACCGAGGGGGCTGCTTCGCAGCCCTATCACGACACAAGGCCGCTCCTGCAGAGAATTTCTTGATCTCTACAGGAGCGGCCTTGTGTCGTGATAGGGCCGCAAAGCGGCCCC‑‑CTCGGTTTTCAGCTGGCAGAAATTACTTC < NB501016:282:H2V7GAFX2:4:21409:14977:17867/149‑1 (MQ=60)
aacttcccctgggggcggaatcccccccatacaaccacccaacgccgcccctgaacacaatttcttcaaataaacagcagcggcattgtgtggttattGGGCCGCAAAGCGGCCCC‑‑CTCGGTTTTCAGCTGGCAGAAATTACTTCTGCTTC < NB501016:282:H2V7GAFX2:1:11306:12813:2229/53‑1 (MQ=53)
GAAGTACCGAGGGGGCTGCTTCGCAGCCCTATCACGACACAAGGCCGCTCCTGCAGAGAATTTCTTGATGTCTACAGGAGCGGCCGTGTGTCGTGATAGGGCCGCAAAGCGGCCCC‑‑CTCGGTTTTCAGCTGGCAGAAATTTCGTCTGCTTG > NB501016:282:H2V7GAFX2:4:11401:6351:19131/1‑151 (MQ=60)
TACCGAGGGGGCTGCTTCGCAGCCCTATCACGACACAAGGCCGCTCCTGCAGAGAATTTCTTGATCTCTACAGGAGCGGCCTTGTGTCGTGATAGGGGCGCAAAGCGGCCCC‑‑CTGGGTTTTCAGCTGGCAGAAATTACTTCTGGTTCACAC > NB501016:282:H2V7GAFX2:2:21106:6522:3264/1‑151 (MQ=60)
cggggacttCTTCGCATCCCTATCACGACACAATGCCGCTCCTGCAGAGAATTTCTTGATCTCTACAGGAGCTGCCTTGTGTCTTGATAGGGCCGCAAAGCGGCCCC‑‑CTCGGTTTTCAGCTGGCAGAAATTACTTCTGCTTCACACCTTCG < NB501016:282:H2V7GAFX2:2:11209:10222:4345/142‑1 (MQ=60)
GGGGGGCTGCTTCGCAGCCCTATCACTACACAAGGCCGCTCCTGCAGAGAATTTCTTGATCTCTACAGGAGCGGCCTTGTGTCGTGATAGGGCCGCAAAGCGGCCCC‑‑CTCGGTTTTCAGCTGGCAGAAATTACTTCTGCTTCACACCTTCG < NB501016:282:H2V7GAFX2:4:11607:7017:6840/151‑1 (MQ=60)
CGGGGGCTGCTACGCAGCCCAACCACCACACAAGGCCGCTCCTGCAGAGAATTTCTTCACCTCTACCGGCGCGGCCTTGTGTCGTGATAGGGCCGCAAAGCGGCCCC‑‑CTCGGTTTTCAGCTGGCAGAAATTACTTCTGCTTCACACCTTCG < NB501016:282:H2V7GAFX2:2:21104:17779:11140/151‑1 (MQ=60)
GGGCTGCTTCGCAGCCCTATCACGACACAAGGCCGCACCTGCAGAGAATTTGTTGATCTCTACAGGAGCGGCCTTGGGTCGTGATAGGGCCGCAAAGC‑G‑GCCCGCTCGGGTTTCAGCTCGCAGAAATTACTTCTGCTTCACGCCTTCGACC > NB501016:282:H2V7GAFX2:3:21501:5888:5345/1‑151 (MQ=60)
GTTCGCAGCCCTATCACGACACAAGGCCGCTCCTGCAGAGAATTTCTTGATCTCTACAGGAGCGGCCTTGTGTCGTGATAGGGCCGCAAAGCGGCCCC‑‑CTCGGTTTTCAGCTGGCAGAAATTACTTCTGCTTCACACCTTCGACACTGATA < NB501016:282:H2V7GAFX2:3:11402:2862:3388/151‑1 (MQ=60)
TCGCAGCCCTATCACGACACAAGGCCGCTCCTGCAGAGAATTTCTTGATCTCTACAGGAGCGGCCTTGTGTCGTGATAGGGCCGCAAAGCGGCCCC‑‑CTCGGTTTTCAGCTGGCAGAAATTACTTCTGCTTCACACCTTCGACACTGATA < NB501016:282:H2V7GAFX2:3:11507:14323:13976/149‑1 (MQ=60)
CGCAGCCCTATCACGACACAAGGCCGCTCCTGCAGAGAATTTCTTGATCTCTACAGGAGCGGCCTTGTGTCGTGATAGGGCCGCAAAGCGGCCCC‑‑CTCGGTGTTCAGCTGGGAGAAATTACTTCTGCTTCACACCTTCGACACTGATATCC > NB501016:282:H2V7GAFX2:1:11212:25829:9069/1‑151 (MQ=60)
CCTATCACGACACAAGGCCGCTCCTGCAGAGAATTTCTTGATCTCTACAGGAGCGGCCTTGTGTCGTGATAGGGCCGCAAAGCGGCCCC‑‑CTCGGTTTTCAGCTGGCAGAAATTACTTCTGCTTCACACCTTCGACACTGATATCCAGGTCC > NB501016:282:H2V7GAFX2:4:21404:2872:14866/1‑151 (MQ=60)
ACACGACACAAGGCCGCTCCTGCAGAGATTTTCTTGATCTCTACAGGAGCGGCCTTGTGTCGTGATAGGGCCGCAAAGCGGCCCC‑‑CTCGGTTTTCAGCTGGCAGAAATTACTTCTGCTTCACACCTTCGACACTGATATCCAGGTCCAGGG < NB501016:282:H2V7GAFX2:3:11405:16068:13456/151‑1 (MQ=60)
ACACAAGGCCGCTCCTGCAGAGAATTTCTTGATCTCTACAGGAGCGGCCTTGTGTCGTGATAGGGCCGCAAAGCGGCCCC‑‑CTCGGTTTTAAGCTGGCAGAAATTACTTATGCTTAACACCTTCGCAACTGATATACAGGTCCAGGGTGTGC > NB501016:282:H2V7GAFX2:4:21407:8280:1069/1‑151 (MQ=60)
CAAGGCCGCTCCTGCAGAGAATTTCTTGATCTCTACAGGAGCGGCCTTGTGTCGTGATAGGGCCGCAAAGCGGCCCC‑‑CTCGGTTTTCAGCTGGCAGAAAATACTTCTGCTTCACACCTTCGACACTGATATCCAGGGCCAGGGTCTGCGA > NB501016:282:H2V7GAFX2:1:21212:21270:12609/1‑150 (MQ=60)
GCCGCTCCTGCAGAGAATTTCTTGATCTCTACAGGAGCGGCCTTGTGTCGTGATAGGGCCGCAAAGCGGCCCC‑‑CTCGGTTTTCAGCTGGCAGAAATTACTTCTGCTTCACACCTTCGACACTGATATCCAGGTCCAGGGTCTGCGAAGTAG < NB501016:282:H2V7GAFX2:4:11407:4950:4122/151‑1 (MQ=60)
AGAGAATTTCTTGATCTCTACAGGAGCGGCCTTGTGTCGTGATAGGGCCGCAAAGCGGCCCC‑‑CTCGGTTTTCAGCTGGCAGAAATTACTTCTGCTTCACACCTTCGACACTGATATCCAGGTCCAGGGTCTGCGAAGTAGCACCCGGGCCT < NB501016:282:H2V7GAFX2:3:11609:16027:3004/151‑1 (MQ=60)
AATTTCTTGATCTCTACAGGAGCGGCCTTGTGTCGTGATAGGGCCGCAAAGCGGCCCC‑‑CTCGGTTTTCAGCTGGCAGAAATTACTTCTGCTTCACACCTTCGACACTGATATCCAGGTCCAGGGTCTGCGAAGTAGCACCCGGGCCTTTG < NB501016:282:H2V7GAFX2:3:11509:7533:8636/150‑1 (MQ=60)
gcgagagttactggagttcagacgtgggcgcttccgagctGGCCGCAAAGCGGCCCC‑‑CTCGGTTTTCAGCTGGCAGAAATTACTTCTGCTTCACACCTTCGACACTGATATCCAGGTCCAGGGTCTGCGAAGTAGCACCCGGGCCTTTGAT < NB501016:282:H2V7GAFX2:1:21306:16952:10670/111‑1 (MQ=60)
ATTTCTTGATCTCTACAGGAGCGGCCTTGTGTCGTGATAGGGCCGCAAAGCGGCCCC‑‑CTCGGTTTTCAGCTGGCAGAAATTACTTCTGCTTCACACCTTCGACACTGATATCCAGGTCCAGGGTCTGCGAAGTAGCACCCGGGCCTTTGAT > NB501016:282:H2V7GAFX2:3:11408:1812:18996/1‑151 (MQ=60)
ATTTCTTGATCTCTACAGGAGCGGCCTTGTGTCGTGATAGGGCCGCAAAGCGGCCCC‑‑CTCGGTTTTCAGCTGGCAGAAATTACTTCTGCTTCACACCTTCGACACTGATATCCAGGTCCAGGGTCTGCGAAGTAGCACCCGGGCC‑TTGATG < NB501016:282:H2V7GAFX2:2:21312:18605:19759/151‑1 (MQ=60)
TGATCTCTACAGGAGCGGCCTTGTGTCGTGATAGGGCCGCAAAGCGGCCCC‑‑CTCGGTTTTCAGCTGGCAGAAATTACTTCTGCTTCACACCTTCGACACTGATATCCAGGTCCAGGGTCTGCGAAGTAGCACCCGGGCCTTTGATGCC < NB501016:282:H2V7GAFX2:1:11202:4989:18949/148‑1 (MQ=60)
GATCTCTACAGGAGCGGCCTTGTGTCGTGATAGGGCCGCAAAGCGGCCCC‑‑CTCGGTTTTCAGCTGGCAGAAATTACTTCTGCTTCACACCTTCGACACTGATATCCAGGTCCAGGGTCTGCGAAGTAGCACCCGGGCCTTTGATGCCGAA < NB501016:282:H2V7GAFX2:3:11511:8053:17924/150‑1 (MQ=60)
GATCTCTACAGGAGCGGCCTTGTGTCGTGATAGGGCCGCAAAGCGGCCCC‑‑CTCGGTTTTCAGCTGGCAGAAATTACTTCTGCTTCACACCTTCGACACTGATATCCAGGTCCAGGGTCTGCGAAGTAGCACCCGGGCCTTTGATGCCGAA < NB501016:282:H2V7GAFX2:3:21512:1769:4882/150‑1 (MQ=60)
CTCTACAGGAGCGGCCTTGTGTCGTGATAGGGCCGCAAAGCGGCCCC‑‑CTCGGTTTTCAGCTGGCAGAAATTACTTCTGCTTCACACCTTCGACACTGATATACAGGTCCAGGGTCTGCGAAGTAGCACCCGGGCCTTTGATGCCGAAGTCG > NB501016:282:H2V7GAFX2:3:11410:11538:4543/1‑151 (MQ=60)
TCTACAGGAGCGGCCTTGTGTCGTGATAGGGCCGCAAAGCGGCCCC‑‑CTCGGTTTTCAGCTGGCAGAAATTACTTCTGCTTCACACCTTCGACACTGATATCCAGGTCCAGGGTCTGCGAAGTAGCACCCGGGCCTTTGATGCCGAAGTCGT > NB501016:282:H2V7GAFX2:1:11105:22464:11174/1‑151 (MQ=60)
ACAGGAGCGGCCTTGTGTCGTGATAGGGCCGCAAAGCGGCCCC‑‑CTCGGTTTTCAGCTGGCAGAAATTACTTCTGCTTCACACCTTCGACACTGATATCCAGGTCCAGGGTCTGCGAAGTAGCACCCGGGCCTTTGATGCCGAAGTCGT < NB501016:282:H2V7GAFX2:4:11407:5207:9508/148‑1 (MQ=60)
ACAGGAGCGGCCTTGTGTCGTGATAGGGCCGCAAAGCGGCCCC‑‑CTCCGTTTTAATCAGGCAGAAAATAATTCTGCTTCACACCATCGACACTGATATACAGGTCCAGGGTCTGCGAAGTAGCAACCCGCCCATTGAAGCCGAAGTAGTTC > NB501016:282:H2V7GAFX2:2:21212:17694:17026/1‑150 (MQ=55)
ACAGGAGCGGCCTTGTGTCGTGATAGGGCCGCAAAGCGGCCCC‑‑CACGGTTTTCAGCAGGCAGAAATTAATTATGCATAACACCTTCGACACAGATATCCAGGTCCAGGGTCAGCCAAGTAGCACCCGGGCCTTTGATGCCGAAGTCGTTC > NB501016:282:H2V7GAFX2:2:21212:18557:13330/1‑150 (MQ=60)
TGTCGTGATAGGGCCGCAAAGCGGCCCC‑‑CTCGGTTTTCAGCTGGCAGAAATTACTTCTGCTTCACACCTTCGACACTGATATCCAGGTCCAGGGTCTGCGAAGTAGCACCCGGGCCTTTGATGCCGAAGTCGTTCAGGTTCAGCGTGGTGG > NB501016:282:H2V7GAFX2:1:21203:18411:15764/1‑151 (MQ=60)
CGTGATAGGGCCGCAAAGCGGCCCC‑‑CTCGGTTTTCAGCTGGCAGAAATTACTTCTGCTTCACACCTTCGACACTGATATCCAGGTCCAGGGTCTGCGAAGTAGCACCCGGGCCTTTGATGCCGAAGTCGTTCAGGTTCAGCGTGGTGGTGG > NB501016:282:H2V7GAFX2:1:21201:22650:10808/1‑151 (MQ=60)
GTGATAGGGCCGCAAAGCGGCCCC‑‑CTCGGTTTTCAGCTGGCAGAAATTACTTCTGCTTCACACCTTCGACACTGATATCCAGGTCCAGGGTCTGCGAAGTAGCACCCGGGCCTTTGATGCCGAAGTCGTTCAGGTTCAGCGTGGTGGTGGC > NB501016:282:H2V7GAFX2:3:21511:26722:10038/1‑151 (MQ=60)
GTGATAGGGCCGCAAAGCGGCCCC‑‑CTCGGTTTTCAGCTGGCAGAAATTACTTCTGCTTCACACCTTCGACACTGATATCCAGGTCCAGGGTCTGCGAAGTAGCACCCGGGCCTTTGATGCCGAAGTCGTTCAGGTTCAGCGTGGTGGTGGC > NB501016:282:H2V7GAFX2:2:21205:24462:13867/1‑151 (MQ=60)
GGCCGCAAAGCGGCCCC‑‑CTCGGTTTTCAGCTGGCAGAAATTACTTCTGCTTCACACCTTCGACACTGATATCCAGGTCCAGGGTCTGCGAAGTAGCACCCGGGCCTTTTATGCCGAAGTCGTTCAGGTTCAGCGTGGTGGTGGCGTTGAAG < NB501016:282:H2V7GAFX2:3:11501:15597:10500/151‑1 (MQ=60)
GGCCGCAAAGCGGCCCC‑‑CTCGGTTTTCAGCTGGCAGAAATTACTTCTGCTTCACACCTTCGACACTGATATCCAGGTCCAGGGTCTGCGAAGTAGCACCCGGGCCTTTGATGCCGAAGTCGTTCAGGTTCAGCGTGGTGGTGGCGTTGAAG < NB501016:282:H2V7GAFX2:3:21406:13775:18146/151‑1 (MQ=60)
GGCCGCAAAGCGGCCCC‑‑CTCGGTTTTCAGCTGGCAGAAATTACTTCTGCTTCACACCTTCGACACTGATATCCAGGTCCAGGGTCTGCGAAGTAGCACCCGGGCCTTTGATGCCGAAGTCGTTCAGGTTCAGCGTGGTGGTGGCGTTGAAG < NB501016:282:H2V7GAFX2:4:11508:17474:13295/151‑1 (MQ=60)
GGCCGCAAAGCGGCCCC‑‑CTCGGTTTTCAGCTGGCAGAAATTACTTCTGCTTCACACCTTCGACACTGATATCCAGGTCCAGGGTCTGCGAAGTAGCACCCGGGCCTTTGATGCCGAAGTCGTTCAGGTTCAGCGTGGTGGTGGCGTTGA > NB501016:282:H2V7GAFX2:2:11109:6828:8124/1‑149 (MQ=60)
CCGCAAAGCGGCCCC‑‑CTCGGTTTTCAGCTGGCAGAAATTACTTCTGCTTCACACCTTCGACACTGATATCCAGGTCCAGGGTCTGCGAAGTAGCACCCGGGCCTTTGATGCCGAAGTCGTTCAGGTTCAGCGTGGTGGTGGCGTTGAAGCC > NB501016:282:H2V7GAFX2:4:11412:15363:13978/1‑151 (MQ=60)
CGCAAAGCGGCCCC‑‑CTCGGTTTTCAGCTGGCAGAAATTACTTCTGCTTCACACCTTCGACACTGATATCCAGGTCCAGGGTCTGCGAAGTAGCACCCGGGCCTTTGATGCCGAAGTCGTTCAGGTTCAGCGTGGTGGTGGCGTTGAAGCC > NB501016:282:H2V7GAFX2:3:11412:20240:10892/1‑150 (MQ=60)
GCAAAGCGGCCCC‑‑CTCGGTTTTCAGCTGGCAGAAATTACTTCTGCTTCACACCTTCGACACTGATATCCAGGTCCAGGGTCTGCTAAGTAGCACCCGGGCCTTTGATGCCGAAGTCGTTCAGGTTCTGCGTGGTGGTGGCGTTGAAGCCAG < NB501016:282:H2V7GAFX2:4:11406:10774:18697/151‑1 (MQ=60)
AAAGCGGCCCC‑‑CTCGGTTTTCAGCTGGCAGAAATTACTTCTGCTTCACACCTTCGACACTGATATCCAGGTCCAGGGTCTGCGAAGTAGCACCCGGGCCTTTGATGCCGAAGTCGTTCAGGTTCAGCGTGGTGGTGGCGTTGAAGCCAGCG < NB501016:282:H2V7GAFX2:4:11602:22421:14623/151‑1 (MQ=60)
AAAGCGGCCCC‑‑CTCGGTTTTCAGCTGGCAGAAATTACTTCTGCTTCACACCTTCGACACTGATATCCAGGTCCAGGGTCTGCGAAGTAGCACCCGGGCCTTTGATGCCGAAGTCGTTCAGGTTCAGCGTGGTGGTGGCGTTGAAGCCAGCG > NB501016:282:H2V7GAFX2:4:21612:21861:2497/1‑151 (MQ=60)
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CAGCGCTGCTGACCCGCAAGGGCTGATAGAAGTACCGAGGGGGCTGCTTCGCAGCCCTATCACGACACAAGGCCGCTCCTGCAGAGAATTTCTTGATCTCTACAGGAGCGGCCTTGTGTCGTGATAGGGCCGCAAAGC‑GCGCC‑‑CTCGGTTTTCAGCTGGCAGAAATTACTTCTGCTTCACACCTTCGACACTGATATCCAGGTCCAGGGTCTGCGAAGTAGCACCCGGGCCTTTGATGCCGAAGTCGTTCAGGTTCAGCGTGGTGGTGGCGTTGAAGCCAGCG > NC_002947_CJ‑RC/5677428‑5677710
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| Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 0 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
