Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A4 F58 I1 R1
|
60 |
66.0 |
2910360 |
98.3% |
2860883 |
145.7 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| RA |
NC_002947_CJ‑RC |
5,502,776 |
A→C |
intergenic (+19/‑116) |
cobK → / → PP_4833 |
precorrin‑6x reductase/SURF1 domain‑containing protein |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NC_002947_CJ‑RC | 5,502,776 | 0 | A | C | 98.1%
| 185.2
/ ‑3.2
| 52 | intergenic (+19/‑116) | cobK/PP_4833 | precorrin‑6x reductase/SURF1 domain‑containing protein |
| Reads supporting (aligned to +/- strand): ref base A (0/0); major base C (26/25); minor base . (1/0); total (27/25) |
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 |
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.13e-01 |
CCGAAGCTGGAAGTGGCGCGGGAGCTTGGCGTGCCGGTGCTTGTCCTGAAACGTCCGACGCTGCCGGAGGTGGACAGGGCATTCGACTCACTGACGGATCTGGCCACAGCGCTCGCCCTTTAGGCGCTGCCCTTTCACAACACAAAGGCACTCCTACAAGGATTTCAGACTTTTCTTCCAACCAACCCAGTGGCCCGTTGCCGATCTGCTGCCTTAAACTCGACGCCCCTCCCCCGGAAGGTTTCACCCATATGGAAATGCAATGGTGGATCTGGCTGGTCTTCG > NC_002947_CJ‑RC/5502635‑5502919
|
ccGAAGCTGGAAGTGGCGCGGGAGCTTGGCGTGCCGGTGCTTGTCCTGAAACGTCCGACGCTGCCGGAGGTGGACAGGGCATTCGACTCACTGACGGATCTGGCCACAGCGCTCGCCCTTTAGGCGCTGCCCTTTCACAACCCAAAgg > 6:167521/1‑148 (MQ=255)
aaGCTGGAAGTGGCGCGGGAGCTTGGCGTGCCGGTGCTTGTCCTGAAACGTCCGACGCTGCCGGAGGTGGACAGGGCATTCGACTCACTGACGGATCTGGCCACAGCGCTCGCCCTTTAGGCGCTGCCCTTTCACAACCCAAAGGCAc > 6:254247/1‑148 (MQ=255)
aGCTAGAAGTGGCGCGGGAGCTTGGCGTGCCGGTGCTTGTCCTGAAACGTCCGACGCTGCCGGAGGTGGACAGGGCATTCGACTCACTGACGGATCTGGCCACAGCGCTCGCCCTTTAGGCGCTGCCCTTTCACAACCCAAAGGCACt < 4:349915/148‑1 (MQ=255)
aaGTGGCGCGGGAGCTTGGCGTGCCGGTGCTTGTCCTGAAACGTCCGACGCTGCCGGAGGTGGACAGGGCATTCGACTCACTGACGGATCTGGCCACAGCGCTCGCCCTTTAGGCGCTGCCCTTTCACAACCCAAAGGCACTCCTAc > 4:128788/1‑147 (MQ=255)
tGGCGCGGGAGCTTGGCGTGCCGGTGCTTGTCCTGAAACGTCCGACGCTGCCGGAGGTGGACAGGGCATTCGACTCACTGACGGATCTGGCCACAGCGCTCGCCCTTTAGGCGCTGCCCTTTCACAACCCAAAGGCACTCCTACAAgg < 4:75697/148‑1 (MQ=255)
cgcgGGAGCTTGGCGTGCCGGTGCTTGTCCTGAAACGTCCGACGCTGCCGGAGGTGGACAGGGCATTCGACTCACTGACGGATCTGGCCACAGCGCTCGCCCTTTAGGCGCTGCCCTTTCACAACCCAAAGGCACTCCTACAAGGAtt > 5:216619/1‑148 (MQ=255)
cgGGAGCTTGGCGTGCCGGTGCTTGTCCTGAAACGTCCGACGCTGCCGGAGGTGGACAGGGCATTCGACTCACTGACGGATCTGGCCACAGCGCTCGCCCTTTAGGCGCTGCCCTTTCACAACCCAAAGGCACTCCTACAAGGATTTc < 1:331194/148‑1 (MQ=255)
cgGGAGCTTGGCGTGCCGGTGCTTGTCCTGAAACGTCCGACGCTGCCGGAGGTGGACAGGGCATTCGACTCACTGACGGATCTGGCCACAGCGCTCGCCCTTTAGGCGCTGCCCTTTCACAACCCAAAGGCACTCCTACAAGGATTTCa < 7:110949/149‑1 (MQ=255)
gAGNTTGGCGTGCCGGTGCTTGTCCTGAAACGTCCGACGCTGCCGGAGGTGGACAGGGCATTCGACTCACTGACGGATCTGGCCACAGCGCTCGCCCTTTAGGCGCTGCCCTTTCACAACCCAAAGGCACTCCTACAAGGATTTCAGa > 5:222428/1‑148 (MQ=255)
gAGCTTGGCGTGCCGGTGCTTGTCCTGAAACGTCCGACGCTGCCGGAGGTGGACAGGGCATTCGACTCACTGACGGATCTGGCCACAGCGCTCGCCCTTTAGGCGCTGCCCTTTCACAACCGAAAGGCACTCCTACAAGGATTTCAGa > 5:217785/1‑148 (MQ=255)
ccGGTGCTTGTCCTGAAACGTCCGACGCTGCCGGAGGTGGACAGGGCATTCGACTCACTGACGGATCTGGCCACAGCGCTCGCCCTTTAGGCGCTGCCCTTTCACAACCCAAAGGCACTCCTACAAGGATTTCAGACTTTTCTTccaa < 5:254247/148‑1 (MQ=255)
cGGTGCTTGTCCTGAAACGTCCGACGCTGCCGGAGGTGGACAGGGCATTCGACTCACTGACGGATCTGGCCACAGCGCTCGCCCTTTAGGCGCTGCCCTTTCACAACCCAAAGGCACTCCTACAAGGATTTCAGACTTTTCTTccaac > 5:785/1‑148 (MQ=255)
cGGTGCTTGTCCTGAAACGTCCGACGCTGCCGGAGGTGGACAGGGCATTCGACTCACTGACGGATCTGGCCACAGCGCTCGCCCTTTAGGCGCTGCCCTTTCACAACCCAAAGGCACTCCTACAAGGATTTCAGACTTTTCTTccaac < 3:22382/148‑1 (MQ=255)
cTTGTCCTGAAACGTCCGACGCTGCCGGAGGTGGACAGGGCATTCGACTCACTGACGGATCTGGCCACAGCGCTCGCCCTTTAGGCGCTGCCCTTTCACAACCCAAAGGCACTCCTACAAGGATTTCAGACTTTTCTTCCaaccaacc > 4:149681/1‑148 (MQ=255)
ttGTCCTGAAACGTCCGACGCTGCCGGAGGTGGACAGGGCATTCGACTCACTGACGGATCTGGCCACAGCGCTCGCCCTTTAGGCGCTGCCCTTTCACAACCCAAAGGCACTCCTACAAGGATTTCAGACTTTTCTTCCaaccaacc > 8:226790/1‑147 (MQ=255)
tCCTGAAACGTGCGACGCTGCCGGTGGTGGTCAGGGCATTCGTCTCACTGACGGATCTGGCCACAGCGCTCGCCCTTTAGGCGCTGCCCTTTCACAACCCAAAGGGACTCCTACAAGGATTTCAGACTTTTCTTCCAACCAACCCAg < 6:299678/147‑1 (MQ=255)
tGAAACGTCCGACGCTGCCGGAGGTGGACAGGGCATTCGACTCACTGACGGATCTGGCCACAGCGCTCGCCCTTTAGGCGCTGCCCTTTCACAACCCAAAGGCACTCCTACAAGGATTTCAGACTTTTCTTCCAACCAACCCAGTGGc > 2:154630/1‑148 (MQ=255)
gAAACGTCCGACGCTGCCGGAGGTGGACAGGGCATTCGACTCACTGACGGATCTGGCCACAGCGCTCGCCCTTTAGGCGCTGCCCTTTCACAACCCAAAGGCACTCCTACAAGGATTTCAGACTTTTCTTCCAACCAACCCAGTGGcc > 3:16204/1‑148 (MQ=255)
aaCGTCCGACGCTGCCGGAGGTGGACAGGGCATTCGACTCACTGACGGATCTGGCCACAGCGCTCGCCCTTTAGGCGCTGCCCTTTCACAACCCAAAGGCACTCCTACAAGGATTTCAGACTTTTCTTCCAACCAACCCAGTGGCCCg > 6:81628/1‑148 (MQ=255)
aCGTCCGACGCTGCCGGAGGTGGACAGGGCATTCGACTCACTGACGGATCTGGCCACAGCGCTCGCCCTTTAGGCGCTGCCCTTTCACAACCCAAAGGCACTCCTACAAGGATTTCAGACTTTTCTTCCAACCAACCCAGTGGCCCGt < 3:311436/148‑1 (MQ=255)
tCCGACGCTGCCGGAGGTGGACAGGGCATTCGACTCACTGACGGATCTGGCCACAGCGCTCGCCCTTTAGGCGCTGCCCTTTCACAACCCAAAGGCACTCCTACAAGGATTTCAGACTTTTCTTCCAACCAACCCAGTGGCCCGTTGcc < 7:226790/149‑1 (MQ=255)
gCCGGAGGTGGACAGGGCATTCGACTCACTGACGGATCTGGCCACAGCGCTCGCCCTTTAGGCGCTGCCCTTTCACAACCCAAAGGCACTCCTACAAGGATTTCAGACTTTTCTTCCAACCAACCCAGTGGCCCGTTGCCGATctgct > 4:148702/1‑148 (MQ=255)
aGGTGGACAGGGCATTCGACTCACTGACGGATCTGGCCACAGCGCTCGCCCTTTAGGCGCTGCCCTTTCACAACCCAAAGGCACTCCTACAAGGATTTCAGACTTTTCTTCCAACCAACCCAGTGGCCCGTTGCCGATCTGCTGCCt > 5:238672/1‑147 (MQ=255)
tGGACAGGGCATTCGACTCACTGACGGATCTGGCCACAGCGCTCGCCCTTTAGGCGCTGCCCTTTCACAACCCAAAGGCACTCCTACAAGGATTTCAGACTTTTCTTCCAACCAACCCAGTGGCCCGTTGCCGATCTGCTGCCTTaaa < 1:233500/148‑1 (MQ=255)
aCAGGGCATTCGACTCACTGACGGATCTGGCCACAGCGCTCGCCCTTTAGGCGCTGCCCTTTCACAAC‑CAAAGGCACTCCTACAAGGATTTCAGACTTTTCTTCCAACCAACCCAGTGGCCCGTTGCCGATCTGCTGCCTTAAACTc > 3:186300/1‑147 (MQ=255)
cAGGGCATTCGACTCACTGACGGATCTGGCCACAGCGCTCGCCCTTTAGGCGCTGCCCTTTCACAACCCAAAGGCACTCCTACAAGGATTTCAGACTTTTCTTCCAACCAACCCAGTGGCCCGTTGCCGATCTGCTGCCTTAAACTc > 5:324046/1‑147 (MQ=255)
cAGGGCATTCGACTCACTGACGGATCTGGCCACAGCGCTCGCCCTTTAGGCGCTGCCCTTTCACAACCCAAAGGCACTCCTACAAGGATTTCAGACTTTTCTTCCAACCAACCCAGTGGCCCGTTGCCGATCTGCTGCCTTAAACTc > 3:90486/1‑147 (MQ=255)
gggCATTCGACTCACTGACGGATCTGGCCACAGCGCTCGCCCTTTAGGCGCTGCCCTTTCACAACCCAAAGGCACTCCTACAAGGATTTCAGACTTTTCTTCCAACCAACCCAGTGGCCCGTTGCCGATCTGCTGCCTTAAACTCGACg < 8:287115/149‑1 (MQ=255)
gCATTCGACTCACTGACGGATCTGGCCACAGCGCTCGCCCTTTAGGCGCTGCCCTTTCACAACCCAAAGGCACTCCTACAAGGATTTCAGACTTTTCTTCCAACCAACCCAGTGGCCCGTTGCCGATCTGCTGCCTTAAACTCGACGc > 5:123246/1‑148 (MQ=255)
cTGACGGATCTGGCCACAGCGCTCGCCCTTTAGGCGCTGCCCTTTCACAACCCAAAGGCACTCCTACAAGGATTTCAGACTTTTCTTCCAACCAACCCAGTGGCCCGTTGCCGATCTGCTGCCTTAAACTCGACGCCCCTCCCCCGGa < 5:166974/148‑1 (MQ=255)
aCGGATCTGGCCACAGCGCTCGCCCTTTAGGCGCTGCCCTTTCACAACCCAAAGGCACTCCTACAAGGATTTCAGACTTTTCTTCCAACCAACCCAGTGGCCCGTTGCCGATCTGCTGCCTTAAACTCGACGCCCCTCCCCCGGAAgg < 6:337953/148‑1 (MQ=255)
aTCTGGCCACAGCGCTCGCCCTTTAGGCGCTGCCCTTTCACAACCCAAAGGCACTCCTACAAGGATTTCAGACTTTTCTTCCAACCAACCCAGTGGCCCGTTGCCGATCTGCTGCCTTAAACTCGACGCCCCTCCCCCGGAAGGttt > 5:197521/1‑147 (MQ=255)
tCTGGCCACAGCGCTCGCCCTTTAGGCGCTGCCCTTTCACAACCCAAAGGCACTCCTACAAGGATTTCAGACTTTTCTTCCAACCAACCCAGTGGCCCGTTGCCGATCTGCTGCCTTAAACTCGACGCCCCTCCCCCGGAAGGTTTCAc > 8:158665/1‑149 (MQ=255)
ggCCACAGCGCTCGCCCTTTAGGCGCTGCCCTTTCACAACCCAAAGGCACTCCTACAAGGATTTCAGACTTTTCTTCCAACCAACCCAGTGGCCCGTTGCCGATCTGCTGCCTTAAACTCGACGCCCCTCCCCCGGAAGGTTTCACCCa > 8:62604/1‑149 (MQ=255)
gcaaaaGCGATCGCGATTTAGGCGCTGCCCTTTCACAACCCAAAGGCACTCCTACAAGGATTTCAGACTTTTCTTCCAACCAACCCATTGGCCCGTTGCCTATCTGCTGCCTTTAACTCGACGCCCCTCCCCCGGAAGGTTTCAc < 2:171996/140‑1 (MQ=255)
gCCACAGCGCTCGCCCTTTAGGCGCTGCCCTTTCACAACCCAAAGGCACTCCTACAAGGATTTCAGACTTTTCTTCCAACCAACCCAGTGGCCCGTTGCCGATCTGCTGCCTTAAACTCGACGCCCCTCCCCCGGAAGGTTTc < 3:210932/143‑1 (MQ=255)
gCCACAGCGCTCGCCCTTTAGGCGCTGCCCTTTCACAACCCAAAGGCACTCCTACAAGGATTTCAGACTTTTCTTCCAACCAACCCAGTGGCCCGTTGCCGATCTGCTGCCTTAAACTCGACGCCCCTCCCCCGGAAGGTTTCa < 3:147963/144‑1 (MQ=255)
ccACAGCGCTCGCCCTTTAGGCGCTGCCCTTTCACAACCCAAAGGCACTCCTACAAGGATTTCAGACTTTTCTTCCAACCAACCCAGTGGCCCGTTGCCGATCTGCTGCCTTAAACTCGACGCCCCTCCCCCGGAAGGTTTc < 6:253674/142‑1 (MQ=255)
ccACAGCGCTCGCCCTTTAGGCGCTGCCCTTTCACAACCCAAAGGCACTCCTACAAGGATTTCAGACTTTTCTTCCAACCAACCCAGTGGCCCGTTGCCGATCTGCTGCCTTAAACTCGACGCCCCTCCCCCGGAAGGTTTc > 5:253674/1‑142 (MQ=255)
cacaGCGCTCGCCCTTTAGGCGCTGCCCTTTCACAACCCAAAGGCACTCCTACAAGGATTTCAGACTTTTCTTCCAACCAACCCAGTGGCCCGTTGCCGATCTGCTGCCTTAAACTCGACGCCCCTCCCCCGGAAGGTTTCACCCatat > 7:258449/1‑149 (MQ=255)
ccgcgcTCGCCCTTTCGGCGCTGCCCTTTCACAACCCAACGGCACTCCTACAATTATTTCAGCCTTTTCTTCAACCCACCCCCTTGTCCCGTGTCCGATCTGCTGCCTTAAACTCGCCGCCCCTCCCCCGGACGGTTTCACCCatattg < 8:148163/147‑3 (MQ=255)
cTCGCCCTTTAGGCGCTGCCCTTTCACAACCCAAAGGCACTCCTACAAGGATTTCAGACTTTTCTTCCAACCAACCCAGTGGCCCGTTGCCGATCTGCTGCCTTAAACTCGACGCCCCTCCCCCGGAAGGTTTCACCCATATGGAAAt < 1:154630/148‑1 (MQ=255)
gCCCTTTAGGCGCTGCCCTTTCACAACCCAAAGGCACTCCTACAAGGATTTCAGACTTTTCTTCCAACCAACCCAGTGGCCCGTTGCCGATCTGCTGCCTTAAACTCGACGCCCCTCCCCCGGAAGGTTTCACCCATATGGAAATGCaa > 8:258434/1‑149 (MQ=255)
gCCCTTTAGGCGCTGCCCTTTCACAACCCAAAGGCACTCCTACAAGGATTTCAGACTTTTCTTCCAACCAACCCAGTGGCCCGTTGCCGATCTGCTGCCTTAAACTCGACGCCCCTCCCCCGGAAGGTTTCACCCATATGGAAATGCa < 3:128788/148‑1 (MQ=255)
aGGCGCTGCCCTTTCACAACCCAAAGGCACTCCTACAAGGATTTCAGACTTTTCTTCCAACCAACCCAGTGGCCCGTTGCCGATCTGCTGCCTTAAACTCGACGCCCCTCCCCCGGAAGGTTTCACCCATATGGAAATGCAAtggtgg < 7:345585/148‑1 (MQ=255)
ggCGCTGCCCTTTCACAACCCAAAGGCACTCCTACAAAGATTTCAGACTTTTCTTCCAACCAACCCAGTGGCCCGTTGCCGATCTGCTGCCTTAAACTCGACGCCCCTCCCCCGGAAGGTTTCACCCATATGGAAATGCAATGGTGGa > 5:160209/1‑148 (MQ=255)
gcgcTGCCCTTTCACAACCGAAAGGCACTCCTACAAGGATTTCAGACTTTTCTTCCAACCAACCCAGTGGCCCGTTGCCGATCTGCTGCCTTAAACTCGACGCCCCTCCCCCGGAAGGTTTCACCCATATGGAAATGCAATGGTGGAt < 6:222428/148‑1 (MQ=255)
gcgcTGCCCTTTCACAACCCAAAGGCACTCCTACAAGGATTTCAGACTTTTCTTCCAACCAACCCAGTGGCCCGTTGCCGATCTGCTGCCTTAAACTCGACGCCCCTCCCCCGGAAGGTTTCACCCATATGGAAATGCAATGGTGGAt < 6:217785/148‑1 (MQ=255)
cgcTGCCCTTTCACAACCCAAAGGCACTCCTACAAGGATTTCAGACTTTTCTTCCAACCAACCCAGTGGCCCGTTGCCGATCTGCTTCCTTAAACTCGACGCCCCTCCCCCGGAAGGTTTCACCCATATGGAAATGCAATGGTGGATct < 7:282072/149‑1 (MQ=255)
cTGCCCTTTCACAACCCAAAGGCACTCCTACAAGGATTTCAGACTTTTCTTCCAACCAACCCAGTGGCCCGTTGCCGATCTGCTGCCTTAAACTCGACGCCCCTCCCCCGGAAGGTTTCACCCATATGGAAATGCAATGGTGGATctgg < 7:158665/149‑1 (MQ=255)
tttCACAACCCAAAGGCACTCCTACAAGGATTTCAGACTTTTCTTCCAACCAACCCAGTGGCCCGTTGCCGATCTGCTGCCTTAAACTCGACGCCCCTCCCCCGGAAGGTTTCACCCATATGGAAATGCAATGGTGGATCTGGCTGGt > 4:187800/1‑148 (MQ=255)
ttCACAACCCAAAGGCACTCCTACAAGGATTTCAGACTTTTCTTCCAACCAACCCAGTGGCCCGTTGCCGATCTGCTGCCTTAAACTCGACGCCCCTCCCCCGGAAGGTTTCACCCATATGGAAATGCAATGGTGGATCTGGCTGGTc > 5:238635/1‑148 (MQ=255)
acaacccaaAGGCACTCCTACAAGGATTTCAGACTTTTCTTCCAACCAACCCAGTGGCCCGTTGCCGATCTGCTGCCTTAAACTCGACGCCCCTCCCCCGGAAGGTTTCACCCATATGGAAATGCAATGGTGGATCTGGCTGGTCtt > 6:328238/1‑147 (MQ=255)
acaacccaaAGGCACTCCTACAAGGATTTCAGACTTTTCTTCCAACCAACCCAGTGGCCCGTTGCCGATCTGCTGCCTTAAACTCGACGCCCCTCCCCCGGAAGGTTTCACCCATATGGAAATGCAATGGTGGATCTGGCTGGTCtt < 5:328238/147‑1 (MQ=255)
caacccaaAGGCACTCCTACAAGGATTTCAGACTTTTCTTCCAACCAACCCAGTGGCCCGTTGCCGATCTGCTGCCTTAAACTCGACGCCCCTCCCCCGGAAGGTTTCACCCATATGGAAATGCAATGGTGGATCTGGCTGGTCTTCg < 5:167521/148‑1 (MQ=255)
|
CCGAAGCTGGAAGTGGCGCGGGAGCTTGGCGTGCCGGTGCTTGTCCTGAAACGTCCGACGCTGCCGGAGGTGGACAGGGCATTCGACTCACTGACGGATCTGGCCACAGCGCTCGCCCTTTAGGCGCTGCCCTTTCACAACACAAAGGCACTCCTACAAGGATTTCAGACTTTTCTTCCAACCAACCCAGTGGCCCGTTGCCGATCTGCTGCCTTAAACTCGACGCCCCTCCCCCGGAAGGTTTCACCCATATGGAAATGCAATGGTGGATCTGGCTGGTCTTCG > NC_002947_CJ‑RC/5502635‑5502919
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
BRESEQ :: bam2aln output
CGACCGAGCCGAAGCTGGAAGTGGCGCGGGAGCTTGGCGTGCCGGTGCTTGTCCTGAAACGTCCGACGCTGCCGGAGGTGGACAGGGCATTCGACTCACTGACGGATCTGGCCACAGCGCTCGCCCTTTAGGCGCTGCCCTTTCACAACACAAAGGCACTCCTACAAGGATTTCAGACTTTTCTTCCAACCAACCCAGTGGCCCGTTGCCGATCTGCTGCCTTAAACTCGACGCCCCTCCCCCGGAAGGTTTCACCCATATGGAAATGCAATGGTGGATCTGGCTGGTCTTCGGCATTGC > NC_002947_CJ‑RC/5502627‑5502926
|
CGACCGAGCCGAAGCTGGAAGTGGCGCGGGAGCTTGGCGTGCCGGTGCTTGTCCTGAAACGTCCGACGCTGCCGGAGGTGGACAGGGCATTCGACTCACTGACGGATCTGGCCACAGCGCTCGCCCTTTAGGCGCTGCCCTTTCACAACCC > NB501016:282:H2V7GAFX2:4:11510:18175:9674/1‑151 (MQ=60)
GGCGCGGGAGCTTGGCGTGCCGGTGCTTGTCCTGAAACGTCCGACGCTGCCGGAGGTGGACAGGGCATTCGACTCACTGACGGATCTGGCCACAGCGCTCGCCCTTTAGGCGCTGCCCTTTCACAACCCAAAGGCACTCCTACAAGGATTT > NB501016:282:H2V7GAFX2:3:21407:22123:9028/1‑151 (MQ=60)
GCGGGAGCTTGGCGTGCCGGTGCTTGTCCTGAAACGTCCGACGCTGCCGGAGGTGGACAGGGCATTCGACTCACTGACGGATCTGGCCACAGCGCTCGCCCTTTAGGCGCTGCCCTTTCACAACCCAAAGGCACTCCTACAAGGATTTCAG < NB501016:282:H2V7GAFX2:4:11510:13187:1165/151‑1 (MQ=60)
GCGGGAGCTTGGCGTGCCGGTGCTTGTCCTGAAACGTCCGACGCTGCCGGAGGTGGACAGGGCATTCGACTCACTGACGGATCTGGCCACAGCGCTCGCCCTTTAGGCGCTGCCCTTTCACAACCCAAAGGCACTCCTACAAGGATTTCAG < NB501016:282:H2V7GAFX2:1:21306:25144:2371/151‑1 (MQ=60)
GGGAGNTTGGCGTGCCGGTGCTTGTCCTGAAACGTCCGACGCTGCCGGAGGTGGACAGGGCATTCGACTCACTGACGGATCTGGCCACAGCGCTCGCCCTTTAGGCGCTGCCCTTTCACAACCCAAAGGCACTCCTACAAGGATTTCAGAC > NB501016:282:H2V7GAFX2:3:21408:1063:13549/1‑151 (MQ=60)
GGGAGCTTGGCGTGCCGGTGCTTGTCCTGAAACGTCCGACGCTGCCGGAGGTGGACAGGGCATTCGACTCACTGACGGATCTGGCCACAGCGCTCGCCCTTTAGGCGCTGCCCTTTCACAACCGAAAGGCACTCCTACAAGGATTTCAGAC > NB501016:282:H2V7GAFX2:3:21407:26604:13548/1‑151 (MQ=60)
GCCGGTGCTTGTCCTGAAACGTCCGACGCTGCCGGAGGTGGACAGGGCATTCGACTCACTGACGGATCTGGCCACAGCGCTCGCCCTTTAGGCGCTGCCCTTTCACAACCCAAAGGCACTCCTACAAGGATTTCAGACTTTTCTTCCAACC < NB501016:282:H2V7GAFX2:3:21503:24862:4199/151‑1 (MQ=60)
GCCGGTGCTTGTCCTGAAACGTCCGACGCTGCCGGAGGTGGACAGGGCATTCGACTCACTGACGGATCTGGCCACAGCGCTCGCCCTTTAGGCGCTGCCCTTTCACAACCCAAAGGCACTCCTACAAGGATTTCAGACTTTTCTTCCAACC > NB501016:282:H2V7GAFX2:3:11401:17524:4111/1‑151 (MQ=60)
CCGGTGCTTGTCCTGAAACGTCCGACGCTGCCGGAGGTGGACAGGGCATTCGACTCACTGACGGATCTGGCCACAGCGCTCGCCCTTTAGGCGCTGCCCTTTCACAACCCAAAGGCACTCCTACAAGGATTTCAGACTTTTCTTCCAACCA < NB501016:282:H2V7GAFX2:2:11105:2046:11522/151‑1 (MQ=60)
CTTGTCCTGAAACGTCCGACGCTGCCGGAGGTGGACAGGGCATTCGACTCACTGACGGATCTGGCCACAGCGCTCGCCCTTTAGGCGCTGCCCTTTCACAACCCAAAGGCACTCCTACAAGGATTTCAGACTTTTCTTCCAACCAACCC > NB501016:282:H2V7GAFX2:3:21603:19108:10854/1‑149 (MQ=60)
CTGAAACGTCCGACGCTGCCGGAGGTGGACAGGGCATTCGACTCACTGACGGATCTGGCCACAGCGCTCGCCCTTTAGGCGCTGCCCTTTCACAACCCAAAGGCACTCCTACAAGGATTTCAGACTTTTCTTCCAACCAACCCAGTGGCCC > NB501016:282:H2V7GAFX2:2:11104:7175:7081/1‑151 (MQ=60)
AACGTCCGACGCTGCCGGAGGTGGACAGGGCATTCGACTCACTGACGGATCTGGCCACAGCGCTCGCCCTTTAGGCGCTGCCCTTTCACAACCCAAAGGCACTCCTACAAGGATTTCAGACTTTTCTTCCAACCAACCCAGTGGCCCGTTG < NB501016:282:H2V7GAFX2:2:21305:3806:7949/151‑1 (MQ=60)
GTCCGACGCTGCCGGAGGTGGACAGGGCATTCGACTCACTGACGGATCTGGCCACAGCGCTCGCCCTTTAGGCGCTGCCCTTTCACAACCCAAAGGCACTCCTACAAGGATTTCAGACTTTTCTTCCAACCAACCCAGTGGCCCGTTGCCG < NB501016:282:H2V7GAFX2:4:21408:20312:13567/151‑1 (MQ=60)
GGAGGTGGACAGGGCATTCGACTCACTGACGGATCTGGCCACAGCGCTCGCCCTTTAGGCGCTGCCCTTTCACAACCCAAAGGCACTCCTACAAGGATTTCAGACTTTTCTTCCAACCAACCCAGTGGCCCGTTGCCGATCTGCTGCCTT > NB501016:282:H2V7GAFX2:3:21412:18021:2272/1‑150 (MQ=60)
GTGGACAGGGCATTCGACTCACTGACGGATCTGGCCACAGCGCTCGCCCTTTAGGCGCTGCCCTTTCACAACCCAAAGGCACTCCTACAAGGATTTCAGACTTTTCTTCCAACCAACCCAGTGGCCCGTTGCCGATCTGCTGCCTTAAACT < NB501016:282:H2V7GAFX2:1:21109:6972:16728/151‑1 (MQ=60)
GGACAGGGCATTCGACTCACTGACGGATCTGGCCACAGCGCTCGCCCTTTAGGCGCTGCCCTTTCACAAC‑CAAAGGCACTCCTACAAGGATTTCAGACTTTTCTTCCAACCAACCCAGTGGCCCGTTGCCGATCTGCTGCCTTAAACTCG > NB501016:282:H2V7GAFX2:2:21101:17450:8885/1‑150 (MQ=60)
GACAGGGCATTCGACTCACTGACGGATCTGGCCACAGCGCTCGCCCTTTAGGCGCTGCCCTTTCACAACCCAAAGGCACTCCTACAAGGATTTCAGACTTTTCTTCCAACCAACCCAGTGGCCCGTTGCCGATCTGCTGCCTTAAACTCG > NB501016:282:H2V7GAFX2:3:21604:12888:15796/1‑150 (MQ=60)
GACAGGGCATTCGACTCACTGACGGATCTGGCCACAGCGCTCGCCCTTTAGGCGCTGCCCTTTCACAACCCAAAGGCACTCCTACAAGGATTTCAGACTTTTCTTCCAACCAACCCAGTGGCCCGTTGCCGATCTGCTGCCTTAAACTCG > NB501016:282:H2V7GAFX2:2:11207:23517:3299/1‑150 (MQ=60)
GGGCATTCGACTCACTGACGGATCTGGCCACAGCGCTCGCCCTTTAGGCGCTGCCCTTTCACAACCCAAAGGCACTCCTACAAGGATTTCAGACTTTTCTTCCAACCAACCCAGTGGCCCGTTGCCGATCTGCTGCCTTAAACTCGACGCC > NB501016:282:H2V7GAFX2:3:11601:3403:3959/1‑151 (MQ=60)
ACTGACGGATCTGGCCACAGCGCTCGCCCTTTAGGCGCTGCCCTTTCACAACCCAAAGGCACTCCTACAAGGATTTCAGACTTTTCTTCCAACCAACCCAGTGGCCCGTTGCCGATCTGCTGCCTTAAACTCGACGCCCCTCCCCCGGAAG < NB501016:282:H2V7GAFX2:3:11609:17221:5783/151‑1 (MQ=60)
GGATCTGGCCACAGCGCTCGCCCTTTAGGCGCTGCCCTTTCACAACCCAAAGGCACTCCTACAAGGATTTCAGACTTTTCTTCCAACCAACCCAGTGGCCCGATGCCGATCTGCTGCCTTAAACTCGACGCCCCTCCCCCGGAAGGTTTC > NB501016:282:H2V7GAFX2:3:21403:5278:7283/1‑150 (MQ=60)
GGCCACAGCGCTCGCCCTTTAGGCGCTGCCCTTTCACAACCCAAAGGCACTCCTACAAGGATTTCAGACTTTTCTTCCAACCAACCCAGTGGCCCGTTGCCGATCTGCTGCCTTAAACTCGACGCCCCTCCCCCGGAAGGTTTCACC < NB501016:282:H2V7GAFX2:2:11306:7060:3728/147‑1 (MQ=60)
GGCCACAGCGCTCGCCCTTTAGGCGCTGCCCTTTCACAACCCAAAGGCACTCCTACAAGGATTTCAGACTTTTCTTCCAACCAACCCAGTGGCCCGTTGCCGATCTGCTGCCTTAAACTCGACGCCCCTCCCCCGGAAGGTTTCAC < NB501016:282:H2V7GAFX2:2:21106:1746:14182/146‑1 (MQ=60)
GGCCACAGCGCTCGCCCTTTAGGCGCTGCCCTTTCACAACCCAAAGGCACTCCTACAAGGATTTCAGACTTTTCTTCCAACCAACCCAGTGGCCCGTTGCCGATCTGCTGCCTTAAACTCGACGCCCCTCCCCCGGAAGGTTTCAC > NB501016:282:H2V7GAFX2:3:21503:10206:2009/1‑146 (MQ=60)
CCACAGCGCTCGCCCTTTAGGCGCTGCCCTTTCACAACCCAAAGGCACTCCTACAAGGATTTCAGACTTTTCTTCCAACCAACCCAGTGGCCCGTTGCCGATCTGCTGCCTTAAACTCGACGCCCCTCCCCCGGAAGGTTTCACCCATATG > NB501016:282:H2V7GAFX2:4:21502:9627:13774/1‑151 (MQ=60)
GCTCGCCCTTTAGGCGCTGCCATTTCACAACCCAAAGGCACTCATACAAGGATTTCAGACTTTTCTTCCAACCAACCCAGTGGCCCGTTGCCGATCTGCTGCCTTAAACTCGACGCCCCTCCCCCGGAAGGTTTCACCCATATGGAAATGC < NB501016:282:H2V7GAFX2:1:11306:12798:4508/151‑1 (MQ=60)
CGCCCTTTAGGCGCTGCCCTTTCACAACCCAAAGGCACTCCTACAAGGATTTCAGACTTTTCTTCCAACCAACCCAGTGGCCCGTTGCCGATCTGCTGCCTTAAACTCGACGCCCCTCCCCCGGAAGGTTTCACCCATATGGAAATGCAAT < NB501016:282:H2V7GAFX2:2:11302:9502:11233/151‑1 (MQ=60)
TAGGCGCTGCCCTTTCACAACCCAAAGGCACTCCTACAAGGATTTCAGACTTTTCTTCCAACCAACCCAGTGGCCCGTTGCCGATCTGCTGCCTTAAACTCGACGCCCCTCCCCCGGAAGGTTTCACCCATATGGAAATGCAATGGTGGA < NB501016:282:H2V7GAFX2:4:21607:16621:12168/150‑1 (MQ=60)
TAGGCGCTGCCCTTTCACAACCCAAAGGCACTCCTACAAAGATTTCAGACTTTTCTTCCAACCAACCCAGTGGCCCGTTGCCGATCTGCTGCCTTAAACTCGACGCCCCTCCCCCGGAAGGTTTCACCCATATGGAAATGCAATGGTGGAT > NB501016:282:H2V7GAFX2:3:11607:22254:20142/1‑151 (MQ=60)
GCGCTGCCCTTTCACAACCCAAAGGCACTCCTACAAGGATTTCAGACTTTTCTTCCAACCAACCCAGTGGCCCGTTGCCGATCTGCTTCCTTAAACTCGACGCCCCTCCCCCGGAAGGTTTCACCCATATGGAAATGCAATGGTGGATCTG < NB501016:282:H2V7GAFX2:4:21507:4365:5471/151‑1 (MQ=60)
GCTGCCCTTTCACAACCCAAAGGCACTCCTACAAGGATTTCAGACTTTTCTTCCAACCAACCCAGTGGCCCGTTGCCGATCTGCTGCCTTAAACTCGACGCCCCTCCCCCGGAAGGTTTCACCCATATGGAAATGCAATGGTGGATCTGGC < NB501016:282:H2V7GAFX2:4:11607:9641:8456/151‑1 (MQ=60)
CTTTCACAACCCAAAGGCACTCCTACAAGGATTTCAGACTTTTCTTCCAACCAACCCAGTGGCCCGTTGCCGATCTGCTGCCTTAAACTCGACGCCCCTCCCCCGGAAGGTTTCACCCATATGGAAATGCAATGGTGGATCTGGCTGGTCT > NB501016:282:H2V7GAFX2:3:21412:23397:2105/1‑151 (MQ=60)
CACAACCCAAAGGCACTCCTACAAGGATTTCAGACTTTTCTTCCAACCAACCCAGTGGCCCGTTGCCGATCTGCTGCCTTAAACTCGACGCCCCTCCCCCGGAAGGTTTCACCCATATGGAAATGCAATGGTGGATCTGGCTGGTCTTCG < NB501016:282:H2V7GAFX2:3:21605:24719:11703/150‑1 (MQ=60)
ACAACCCAAAGGCACTCCTACAAGGATTTCAGACTTTTCTTCCAACCAACCCAGTGGCCCGTTGCCGATCTGCTGCCTTAAACTCGACGCCCCTCCCCCGGAAGGTTTCACCCATATGGAAATGCAATGGTGGATCTGGCTGGTCTTCGGC < NB501016:282:H2V7GAFX2:3:11609:21736:7770/151‑1 (MQ=60)
AACCCAAAGGCACTCCTACAAGGATTTCAGACTTTTCTTCCAACCAACCCAGTGGCCCGTTGCCGATCTGCTGCCTTAAACTCGACGCCCCTCCCCCGGAAGGTTTCACCCATATGGAAATGCAATGGTGGATCTGGCTGGTCTTCGGCAT > NB501016:282:H2V7GAFX2:2:11312:4904:18006/1‑151 (MQ=60)
CCCAAAGGCACTCCTACAAGGATTTCAGACTTTTCTTCCAACCAACCCAGTGGCCCGTTGCCGATCTGCTGCCTTAAACTCGACGCCCCTCCCCCGGAAGGTTTCACCCATATGGAAATGCAATGGTGGATCTGGCTGGTCTTCGGCATTG > NB501016:282:H2V7GAFX2:1:21212:2498:3327/1‑151 (MQ=60)
CCCAAAGGCACTCCTACAAGGATTTCAGACTTTTCTTCCAACCAACCCAGTGGCCCGTTGCCGATCTGCTGCCTTAAACTCGACGCCCCTCCCCCGGAAGGTTTCACCCATATGGAAATGCAATGGTGGATCTGGCTGGTCTTCGGCATTG > NB501016:282:H2V7GAFX2:1:11204:11265:14308/1‑151 (MQ=60)
CCAAAGGCACTCCTACAAGGATTTCAGACTTTTCTTCCAACCAACCCAGTGGCCCGTTGCCGATCTGCTGCCTTAAACTCGACGCCCCTCCCCCGGAAGGTTTCACCCATATGGAAATGCAATGGTGGATCTGGCTGGTCTTCGGCATTGG > NB501016:282:H2V7GAFX2:1:11312:21301:11301/1‑151 (MQ=60)
CCAAAGGCACTCCTACAAGGATTTCAGACTTTTCTTCCAACCAACCCAGTGGCCCGTTGCCGATCTGCTGCCTTAAACTCGACGCCCCTCCCCCGGAAGGTTTCACCCATATGGAAATGCAATGGTGGATCTGGCTGGTCTTCGGCATTGC < NB501016:282:H2V7GAFX2:1:21111:3876:10275/151‑1 (MQ=60)
|
CGACCGAGCCGAAGCTGGAAGTGGCGCGGGAGCTTGGCGTGCCGGTGCTTGTCCTGAAACGTCCGACGCTGCCGGAGGTGGACAGGGCATTCGACTCACTGACGGATCTGGCCACAGCGCTCGCCCTTTAGGCGCTGCCCTTTCACAACACAAAGGCACTCCTACAAGGATTTCAGACTTTTCTTCCAACCAACCCAGTGGCCCGTTGCCGATCTGCTGCCTTAAACTCGACGCCCCTCCCCCGGAAGGTTTCACCCATATGGAAATGCAATGGTGGATCTGGCTGGTCTTCGGCATTGC > NC_002947_CJ‑RC/5502627‑5502926
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 0 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
