Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A3 F14 I1 R1
|
57 |
86.1 |
3667460 |
98.7% |
3619783 |
146.2 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| RA |
NC_002947_CJ‑RC |
1,124,125 |
G→T |
H340N (CAT→AAT) |
gcvT‑I ← |
aminomethyltransferase |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NC_002947_CJ‑RC | 1,124,125 | 0 | G | T | 99.1%
| 367.6
/ NA
| 106 | H340N (CAT→AAT) | gcvT‑I | aminomethyltransferase |
| Reads supporting (aligned to +/- strand): ref base G (0/0); major base T (57/48); minor base A (0/1); total (57/49) |
| Fisher's exact test for biased strand distribution p-value = 4.62e-01 |
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 |
Only 100 of 106 total aligned reads displayed.
ACGAATATGTCTATGCTGCCCAAAACCTTCACAAAGCCGTTTCAGCCACGGTAGTAACGTGGTGTCACGAAAGGCATTTTGCTGACTTTCAAGGCCACCTTCTTTCCACGCACCACGGCAAACAGTGCGGTGTCGAGTGCAGCATGTTCACTATCGATATAACCCATGGCGACAGGGGCAGCGAGTGTCGGGCCAAAGCCCCCGCTGCACACTTTACCCACCGGTTTATCGTTTGCGTCGACAATGTCCGCACCTTCACGAACAGGCGTACGCTCCTGCGGCAGCAGGCC > NC_002947_CJ‑RC/1123980‑1124269
|
aCGAATATGTCTATGCTGCCCAAAACCTTCACAAAGCCGTTTCAGCCACGGTAGTAACGTGGTGTCACGAAAGGCATTTTGCTGACTTTCAAGGCCACCTTCTTTCCACGCACCACGGCAAACAGTGCGGTGTCGAGTGCAGCATTTTc < 3:343469/149‑1 (MQ=255)
cGAATATGTCTATGCTGCCCAAAACCTTCACAAAGCCGTTTCAGCCACGGTAGTAACGTGGTGTCACGAAAGGCATTTTGCTGACTTTCAAGGCCACCTTCTTTCCACGCACCACGGCAAACAGTGCGGTGTCGAGTGCAGCATTTTCa < 2:255747/149‑1 (MQ=255)
gAATATGTCTATGCTGCCCAAAACCTTCACAAAGCCGTTTCAGCCACGGTAGTAACGTGGTGTCACGAAAGGCATTTTGCTGACTTTCAAGGCCACCTTCTTTCCACGCACCACGGCAAACAGTGCGGTGTCGAGTGCAGCATTTTCAc > 1:166363/1‑149 (MQ=255)
gAATATGTCTATGCTGCCCAAAACCTTCACAAAGCCGTTTCAGCCACGGTAGTAACGTGGTGTCACGAAAGGCATTTTGCTGACTTTCAAGGCCACCTTCTTTCCACGCACCACGGCAAACAGTGCGGTGTCGAGTGCAGCATTTTCAc > 6:395852/1‑149 (MQ=255)
gAATATGTCTATGCTGCCCAAAACCTTCACAAAGCCGTTTCAGCCACGGTAGTAACGTGGTGTCACGAAAGGCATTTTGCTGACTTTCAAGGCCACCTTCTTTCCACGCACCACGGCAAACAGTGCGGTGTCGAGTGCAGCATTTTCAc > 1:171718/1‑149 (MQ=255)
atatGTCTATGCTGCCCAAAACCTTCACAAAGCCGTTTCAGCCACGGTAGTAACGTGGTGTCACGAAAGGCATTTTGCTGACTTTCAAGGCCACCTTCTTTCCACGCACCACGGCAAACAGTGCGGTGTCGAGTGCAGCATTTTCACTa > 4:240894/1‑149 (MQ=255)
tatGTCTATGCTGCCCAAAACCTTCACAAAGCCGTTTCAGCCACGGTAGTAACGTGGTGTCACGAAAGGCATTTTGCTGACTTTCAAGGCCACCTTCTTTCCACGCACCACGGCAAACAGTGCGGTGTCGAGTGCAGCATTTTCACTAt < 6:47543/149‑1 (MQ=255)
tGTCTATGCTGCCCAAAACCTTCACAAAGCCGTTTCAGCCACGGTAGTAACGTGGTGTCACGAAAGGCATTTTGCTGACTTTCAAGGCCACCTTCTTTCCACGCACCACGGCAAACAGTGCGGTGTCGAGTGCAGCATTTTCACTATc < 4:295688/148‑1 (MQ=255)
tgtATGCTGCCCAAAACGATCACAAAGGCGTTTGAGGCTGGGTAGTAACGTGGTGTCACGATAGGCATTTTGCTGACTTTCATGGCGTCCTTCTTTCCACGCTCCACGGCAAACAGTGCGGTGTCGAGTGCAGCATTTTCACTATCGat < 5:303782/147‑1 (MQ=255)
tCTATGCTGCCCAAAACCTTCACAAAGCCGTTTCAGCCACGGTAGTAACGTGGTGTCACGAAAGGCATTTTGCTGACTTTCAAGGCCACCTTCTTTCCACGCACCACGGCAAACAGTGCGGTGTCGAGTGCAGCATTTTCACTATCg > 8:154181/1‑147 (MQ=255)
tCTATGCTGCCCAAAACCTTCACAAAGCCGTTTCAGCCACGGTAGTAACGTGGTGTCACGAAAGGCATTTTGCTGACTTTCAAGGCCACCTTCTTTCCACGCACCACGGCAAACAGTGCGGTGTCGAGTGCAGCATTTTCACTATCGat < 6:200818/149‑1 (MQ=255)
tCTATGCTGCCCAAAACCTTCACAAAGCCGTTTCAGCCACGGTAGTAACGTGGTGTCACGAAAGGCATTTTGCTGACTTTCAAGGCCACCTTCTTTCCACGCACCACGGCAAACAGTGCGGTGTCGAGTGCAGCATTTTCACTATCGa > 3:178224/1‑148 (MQ=255)
tCTATGCTGCCCAAAACCTTCACAAAGCCGTTTCAGCCACGGTAGTAACGTGGTGTCACGAAAGGCATTTTGCTGACTTTCAAGGCCACCTTCTTTCCACGCACCACGGCAAACAGTGCGGTGTCGAGTGCAGCATTTTCACTATCGa < 5:134850/148‑1 (MQ=255)
aTGCTGCCCAAAACCTTCACAAAGCCGTTTCAGCCACGGTAGTAACGTGGTGTCACGAAAGGCATTTTGCTGACTTTCAAGGCCACCTTCTTTCCACGCACCACGGCAAACAGTGCGGTGTCGAGTGCAGCATTTTCACTATCGatat > 1:264774/1‑148 (MQ=255)
cccAAAACCTTCACAAAGCCGTTTCAGCCACGGTAGTAACGTGGTGTCACGAAAGGCATTTTGCTGACTTTCAAGGCCACCTTCTTTCCACGCACCACGGCAAACAGTGCGGTGTCGAGTGCAGCATTTTCACTATCGATATAACCCa < 4:383234/148‑1 (MQ=255)
cAAAACCTTCACAAAGCCGTTTCAGCCACGGTAGTAACGTGGTGTCACGAAAGGCATTTTGCTGACTTTCAAGGCCACCTTCTTTCCACGCACCACGGCAAACAGTGCGGTGTCGAGTGCAGCATTTTCACTATCGATATAACCCATgg > 1:269866/1‑149 (MQ=255)
aaaaCCTTCACAAAGCCGTTTCAGCCACGGTAGTAACGTGGTGTCACGAAAGGCATTTTGCTGACTTTCAAGGCCACCTTCTTTCCACGCACCACGGCAAACAGTGCGGTGTCGAGTGCAGCATTTTCACTATCGATATATCCCATGGc > 6:313297/1‑149 (MQ=255)
aaaCCTTCACAAAGCCGTTTCAGCCACGGTAGTAACGTGGTGTCACGAAAGGCATTTTGCTGACTTTCAAGGCCACCTTCTTTCCACGCACCACGGCAAACAGTGCGGTGTCGAGTGCAGCATTTTCACTATCGATATAACCCATGGc > 3:95108/1‑148 (MQ=255)
aaaCCTTCACAAAGCCGTTTCAGCCACGGTAGTAACGTGGTGTCACGAAAGGCATTTTGCTGACTTTCAAGGCCACCTTCTTTCCACGCACCACGGCAAACAGTGCGGTGTCGAGTGCAGCATTTTCACTATCGATATAACCCATGGc > 6:241997/1‑148 (MQ=255)
aCCTTCACAAAGCCGTTTCAGCCACGGTAGTAACGTGGTGTCACGAAAGGCATTTTGCTGACTTTCAAGGCCACCTTCTTTCCACGCACCACGGCAAACAGTGCGGTGTCGAGTGCAGCATTTTCACTATCGATATAACCCATGGCGa < 7:79871/148‑1 (MQ=255)
ttCACAAAGCCGTTTCAGCCACGGTAGTAACGTGGTGTCACGAAAGGCATTTTGCTGACTTTCAAGGCCACCTTCTTTCCACGCACCACGGCAAACAGTGCGGTGTCGAGTGCAGCATTTTCACTATCGATATAACCCATGGCGACAgg > 6:271534/1‑149 (MQ=255)
ttCACAAAGCCGTTTCAGCCACGGTAGTAACGTGGTGTCACGAAAGGCATTTTGCTGACTTTCAAGGCCACCTTCTTTCCACGCACCACGGCAAACAGTGCGGTGTCGAGTGCAGCATTTTCACTATCGATATAACCCATGGCGACAg > 7:246761/1‑148 (MQ=255)
tCACAAAGCCGTTTCAGCCACGGTAGTAACGTGGTGTCACGAAAGGCATTTTGCTGACTTTCAAGGCCACCTTCTTTCCACGCACCACGGCAAACAGTGCGGTGTCGAGTGCAGCATTTTCACTATCGATATAACCCATGGCGACa > 1:840/1‑146 (MQ=255)
tCACAAAGCCGTTTCAGCCACGGTAGTAACGTGGTGTCACGAAAGGCATTTTGCTGACTTTCAAGGCCACCTTCTTTCCACGCACCACGGCAAACAGTGCGGTGTCGAGTGCAGCATTTTCACTATCGATATAACCCATGGCGACa < 2:840/146‑1 (MQ=255)
cacaAAGCCGTTTCAGCCACGGTAGTAACGTGGTGTCACGAAAGGCATTTTGCTGACTTTCAAGGCCACCTTCTTTCCACGCACCACGGCAAACAGTGCGGTGTCGAGTGCAGCATTTTCACTATCGATATaa < 1:451016/133‑1 (MQ=255)
cacaAAGCCGTTTCAGCCACGGTAGTAACGTGGTGTCACGAAAGGCATTTTGCTGACTTTCAAGGCCACCTTCTTTCCACGCACCACGGCAAACAGTGCGGTGTCGAGTGCAGCATTTTCACTATCGATATaa > 2:451016/1‑133 (MQ=255)
cacaAAGCCGTTTCAGCCACGGTAGTAACGTGGTGTCACGAAAGGCATTTTGCTGACTTTCAAGGCCACCTTCTTTCCACGCACCACGGCAAACAGTGCGGTGTCGAGTGCAGCATTTTCACAATCGATATAACCCATGGCGACAgg < 4:109974/147‑1 (MQ=255)
acaAAGCCGTTTCAGCCACGGTAGTAACGTGGTGTCACGAAAGGCATTTTGCTGACTTTCAAGGCCACCTTCTTTCCACGCACCACGGCAAACAGTGCGGTGTCGAGTGCAGCATTTTCACTATCGATATAACCCATGGCGACAgggg < 6:322367/148‑1 (MQ=255)
acaAAGCCGTTTCAGCCACGGTAGTAACGTGGTGTCACGAAAGGCATTTTGCTGACTTTCAAGGCCACCTTCTTTCCACGCACCACGGCAAACAGTGCGGTGTCGAGTGCAGCATTTTCACTATCGATATAACCCATGGCGACAgggg > 1:318474/1‑148 (MQ=255)
aaaGCCGTTTCAGCCACGGTAGTAACGTGGTGTCACGAAAGGCATTTTGCTGACTTTCAAGGCCACCTTCTTTCCACGCACCACGGCAAACAGTGCGGTGTCGAGTGCAGCATTTTCACTATCGATATAACCCATGGCGACAGGGGCa > 8:318862/1‑148 (MQ=255)
aaGCCGTTTCAGCCACGGTAGTAACGTGGTGTCACGAAAGGCATTTTGCTGACTTTCAAGGCCACCTTCTTTCCACGCACCACGGCAAACAGTGCGGTGTCGAGTGCAGCATTTTCACTATCGATATAACCCATGGCGACAGGGGCAGc < 2:318474/149‑1 (MQ=255)
aaGCCGTTTCAGCCACGGTAGTAACGTGGTGTCACGAAAGGCATTTTGCTGACTTTCAAGGCCACCTTCTTTCCACGCACCACGGCAAACAGTGCGGTGTCGAGTGCAGCATTTTCACTATCGATATAACCCATGGCGACAGGGGCAGc < 5:115654/149‑1 (MQ=255)
aGCCGTTTCAGCCACGGTAGTAACGTGGTGTCACGAAAGGCATTTTGCTGACTTTCAAGGCCACCTTCTTTCCACGCACCACGGCAAACAGTGCGGTGTCGAGTGCAGCATTTTCACTATCGATATAACCCATGGCGACAGGGGCAGc < 7:102192/148‑1 (MQ=255)
gCCGTTTCAGCCACGGTAGTAACGTGGTGTCACGAAAGGCATTTTGCTGACTTTCAAGGCCACCTTCTTTCCACGCACCACGGCAAACAGTGCGGTGTCGAGTGCAGCATTTTCACTATCGATATAACCCATGGCGACAGGGGCAGCGa < 1:279396/149‑1 (MQ=255)
ccGTTTCAGCCACGGTAGTAACGTGGTGTCACGAAAGGCATTTTGCTGACTTTCAAGGCCACCTTCTTTCCACGCACCACGGCAAACAGTGCGGTGTCGAGTGCAGCATTTTCACTATCGATATAACCCATGGCGACAGGGGCAGCGAg > 3:374355/1‑149 (MQ=255)
cGTTTCAGCCACGGTAGTAACGTGGTGTCACGAAAGGCATTTTGCTGACTTTCAAGGCCACCTTCTTTCCACGCACCACGGCAAACAGTGCGGTGTCGAGTGCAGCATTTTCACTATCGATATAACCCATGGCGACAGGGGCAGCGAgt < 6:291605/149‑1 (MQ=255)
tttCAGCCACGGTAGTAACGTGGTGTCACGAAAGGCATTTTGCTGACTTTCAAGGCCACCTTCTTTCCACGCACCACGGCAAACAGTGCGGTGTCGAGTGCAGCATTTTCACTATCGATATAACCCATGGCGACAGGGGCAGCGAgtgt > 6:346099/1‑149 (MQ=255)
tttCAGCCACGGTAGTAACGTGGTGTCACGAAAGGCATTTTGCTGACTTTCAAGGCCACCTTCTTTCCACGCACCACGGCAAACAGTGCGGTGTCGAGTGCAGCATTTTCACTATCGATATAACCCATGGCGACAGGGGCAGCGAgtgt > 5:57098/1‑149 (MQ=255)
tttCAGCCACGGTAGTAACGTGGTGTCACGAAAGGCATTTTGCTGACTTTCAAGGCCACCTTCTTTCCACGCACCACGGCAAACAGTGCGGTGTCGAGTGCAGCATTTTCACTATCGATATAACCCATGGCGACAGGGGCAGCGAgtg > 7:465792/1‑148 (MQ=255)
aGCCACGGTAGTAACGTGGTGTCACGAAAGGCATTTTGCTGACTTTCAAGGCCACCTTCTTTCCACGCACCACGGCAAACAGTGCGGTGTCGAGTGCAGCATTTTCACTATCGATATAACCCATGGCGACAGGGGCAGCGAGTGTCgg > 8:374557/1‑148 (MQ=255)
aGCCACGGTAGTAACGTGGTGTCACGAAAGGCATTTTGCTGACTTTCAAGGCCACCTTCTTTCCACGCACCACGGCAAACAGTGCGGTGTCGAGTGCAGCATTTTCACTATCGATATAACCCATGGCGACAGGGGCAGCGAGTGTCgg < 4:165015/148‑1 (MQ=255)
gCCACGGTAGTAACGTGGTGTCACGAAAGGCATTTTGCTGACTTTCAAGGCCACCTTCTTTCCACGCACCACGGCAAACAGTGCGGTGTCGAGTGCAGCATTTTCACTATCGATATAACCCATGGCGACAGGGGCAGCGAGTGTCgg < 8:433828/147‑1 (MQ=255)
gCCACGGTAGTAACGTGGTGTCACGAAAGGCATTTTGCTGACTTTCAAGGCCACCTTCTTTCCACGCACCACGGCAAACAGTGCGGTGTCGAGTGCAGCATTTTCACTATCGATATAACCCATGGCGACAGGGGCAGCGAGTGTCGGGc < 3:322495/149‑1 (MQ=255)
gCCACGGTAGTAACGTGGTGTCACGAAAGGCATTTTGCTGACTTTCAAGGCCACCTTCTTTCCACGCACCACGGCAAACAGTGCGGTGTCGAGTGCAGCATTTTCACTATCGATATAACCCATGGCGACAGGGGCAGCGAGTGTCGGGc < 4:184541/149‑1 (MQ=255)
ccACGGTAGTAACGTGGTGTCACGAAAGGCATTTTGCTGACTTTCAAGGCCACCTTCTTTCCACGCACCACGGCAAACAGTGCGGTGTCGAGTGCAGCATTTTCACTATCGATATAACCCATGGCGACAGGGGCAGCGAGTGTCGGGc > 2:42334/1‑148 (MQ=255)
ggTAGTAACGTGGTGTCACGAAAGGCATTTTGCTGACTTTCAAGGCCACCTTCTTTCCACGCACCACGGCAAACAGTGCGGTGTCGAGTGCAGCATTTTCACTATCGATATAACCCATGGCGACAGGGGCAGCGAGTGTCGGGCCaaa < 7:296744/148‑1 (MQ=255)
gtaACGTGGTGTCACGAAAGGCATTTTGCTGACTTTCAAGGCCACCTTCTTTCCACGCACCACGGCAAACAGTGCGGTGTCGAGTGCAGCATTTTCACTATCGATATAACCCATGGCGACAGGGGCAGCGAGTGTCGGGCCAAAGccc < 2:166363/148‑1 (MQ=255)
aCGTGGTGTCACGAAAGGCATTTTGCTGACTTTCAAGGCCACCTTCTTTCCACGCACCACGGCAAACAGTGCGGTGTCGAGTGCAGCATTTTCACTATCGATATAACCCATGGCGACAGGGGCAGCGAGTGTCGGGCCAAAGCCCCCg > 8:434741/1‑148 (MQ=255)
gtggtgTCACGAAAGGCATTTTGCTGACTTTCAAGGCCACCTTCTTTCCACGCACCACGGCAAACAGTGCGGTGTCGAGTGCAGCATTTTCACTATCGATATAACCCATGGCGACAGGGGCAGCGAGTGTCGGGCCAAAGCCCCCGCTg < 2:2665/149‑1 (MQ=255)
aCGAAAGGCATTTTGCTGACTTTCAAGGCCACCTTCTTTCCACGCACCACGGCAAACAGTGCGGTGTCGAGTGCAGCATTTTCACTATCGATATAACCCATGGCGACAGGGGCAGCGAGTGTCGGGCCAAAGCCCCCGCTGCACACtt > 2:125872/1‑148 (MQ=255)
cGAAAGGCATTTTGCTGACTTTCAAGGCCACCTTCTTTCCACGCACCACGGCAAACAGTGCGGTGTCGAGTGCAGCATTTTCACTATCGATATAACCCATGGCGACAGGGGCAGCGAGTGTCGGGCCAAAGCCCCCGCTGCACACttt < 7:227002/148‑1 (MQ=255)
cGAAAGGCATTTTGCTGACTTTCAAGGCCACCTTCTTTCCACGCACCACGGCAAACAGTGCGGTGTCGAGTGCAGCATTTTCACTATCGATATAACCCATGGCGACAGGGGCAGCGAGTGTCGGGCCAAAGCCCCCGCTGCACACTTTa < 1:35250/149‑1 (MQ=255)
gAAAGGCATTTTGCTGACTTTCAAGGCCACCTTCTTTCCACGCACCACGGCAAACAGTGCGGTGTCGAGTGCTGCATTTTCACTATCGATATAACCCATGGCGACAGGGGCAGCGAGTGTCGGGCCAAAGCCCCCGCTGCACACTTTAc > 2:359512/1‑149 (MQ=255)
gAAAGGCATTTTGCTGACTTTCAAGGCCACCTTCTTTCCACGCACCACGGCAAACAGTGCGGTGTCGAGTGCAGCATTTTCACTATCGATATAACCCATGGCGACAGGGGCAGCGAGTGTCGGGCCAAAGCCCCCGCTGCACACTTTa > 7:435128/1‑148 (MQ=255)
gAAAGGCATTTTGCTGACTTTCAAGGCCACCTTCTTTCCACGCACCACGGCAAACAGTGCGGTGTCGAGTGCAGCATTTTCACTATCGATATAACCCATGGCGACAGGGGCAGCGAGTGTCGGGCCAAAGCCCCCGCTGCACACTTTAc < 5:241997/149‑1 (MQ=255)
gAAAGGCATTTTGCTGACTTTCAAGGCCACCTTCTTTCCACGCACCACGGCAAACAGTGCGGTGTCGAGCGCAGCATTTTCACTATCGATATAACCCATGGCGACAGGGGCAGCGAGTGTCGGGCCAAAGCCCCCGCTGCACACTTTAc > 4:58831/1‑149 (MQ=255)
ggCATTTTGCTGACTTTCAAGGCCACCTTCTTTCCACGCACCACGGCAAACAGTGCGGTGTCGAGTGCAGCATTTTCACTATCGATATAACCCATGGCGACAGGGGCAGCGAGTGTCGGGCCAAAGCCCCCGCTGCACACTTTACCCAc < 2:264774/149‑1 (MQ=255)
gCATTTTGCTGACTTTCAAGGCCACCTTCTTTCCACGCACCACGGCAAACAGTGCGGTGTCGAGTGCAGCATTTTCACTATCGATATAACCCATGGCGACAGGGGCAGCGAGTGTCGGGCCAAAGCCCCCGCTGCACACTTTACCCAcc > 6:254067/1‑149 (MQ=255)
cATTTTGCTGACTTTCAAGGCCACCTTCTTTCCACGCACCACGGCAAACAGGGCGGTGTCGAGTGCTGCATTTTCACTATCGATATAACCCATGGCGACAGGGGCAGCGAGTGTCGGGCCAAAGCCCCCGCTGCACACTTTACCCACCg < 3:131617/149‑1 (MQ=255)
ttttGCTGACTTTCAAGGCCACCTTCTTTCCACGCACCACGGCAAACAGTGCGGTGTCGAGTGCAGCATTTTCACTATCGATATAACCCATGGCGACAGGGGCAGCGAGTGTCGGGCCAAAGCCCCCGCTGCACACTTTACCCACCGGt < 5:383724/149‑1 (MQ=255)
ttttGCTGACTTTCAAGGCCACCTTCTTTCCACGCACCACGGCAAACAGTGCGGTGTCGAGTGCAGCATTTTCACTATCGATATAACCCATGGCGACAGGGGCAGCGAGTGTCGGGCCAAAGCCCCCGCTGCACACTTTACCCACCGGt > 1:28266/1‑149 (MQ=255)
gCTGACTTTCAAGGCCACCTTCTTTCCACGCACCACGGCAAACAGTGCGGTGTCGAGTGCAGCATTTTCACTATCGATATAACCCATGGCGACAGGGGCAGCGAGTGTCGGGCCAAAGCCCCCGCTGCACACTTTACCCACCGGTTTa > 7:458116/1‑148 (MQ=255)
tGACTTTCAAGGCCACCTTCTTTCCACGCACCACGGCAAACAGTGCGGTGTCGAGTGCAGCATTTTCACTATCGATATAACCCATGGCGACAGGGGCAGCGAGTGTCGGGCCAAAGCCCCCGCTGCACACTTTACCCACCGGTTTATc > 8:150384/1‑148 (MQ=255)
tGACTTTCAAGGCCACCTTCTTTCCACGCACCACGGCAAACAGTGCGGTGTCGAGTGCAGCATTTTCACTATCGATATAACCCATGGCGACAGGGGCAGCGAGTGTCGGGCCAAAGCCCCCGCTGCACACTTTACCCACCGGTTTATc < 7:83466/148‑1 (MQ=255)
tGACTTTCAAGGCCACCTTCTTTCCACGCACCACGGCAAACAGTGCGGTGTCGAGTGCAGCATTTTCACTATCGATATAACCCATGGCGACAGGGGCAGCGAGTGTCGGGCCAAAGCCCCCGCTGCACACTTTACCCACCGGTTTATCg > 3:341729/1‑149 (MQ=255)
tGACTTTCAAGGCCACCTTCTTTCCACGCACCACGGCAAACAGTGCGGTGTCGAGTGCAGCATTTTCACTATCGATATAACCCATGGCGACAGGGGCAGCGAGTGTCGGGCCAAAGCCCCCGCTGCACACTTTACCCACCGGTTTATCg > 6:108878/1‑149 (MQ=255)
aCTTTCAAGGCCACCTTCTTTCCACGCACCACGGCAAACAGTGCGGTGTCGAGTGCAGCATTTTCACTATCGATATAACCCATGGCGACAGGGGCAGCGAGTGTCGGGCCAAAGCCCCCGCTGCACACTTTACCCACCGGTTTATCGtt > 4:349953/1‑149 (MQ=255)
cTTTCAAGGCCACCTTCTTTCCACGCACCACGGCAAACAGTGCGGTGTCGAGTGCAGCATTTTCACTATCGATATAACCCATGGCGACAGGGGCAGCGAGTGTCGGGCCAAAGCCCCCGCTGCACACTTTACCCACCGGTTTATCGttt < 4:168753/149‑1 (MQ=255)
cTTTCAAGGCCACCTTCTTTCCACGCACCACGGCAAACAGTGCGGTGTCGAGTGCAGCATTTTCACTATCGATATAACCCATGGCGACAGGGGCAGCGAGTGTCGGGCCAAAGCCCCCGCTGCACACTTTACCCACCGGTTTATCGttt < 1:115754/149‑1 (MQ=255)
cTTTCAAGGCCACCTTCTTTCCACGCACCACGGCAAACAGTGCGGTGTCGAGTGCAGCATTTTCACTATCGATATAACCCATGGCGACAGGGGCAGCGAGTGTCGGGCCAAAGCCCCCGCTGCACACTTTACCCACCGGTTTATCGttt < 4:95108/149‑1 (MQ=255)
cTTTCAAGGCCACCTTCTTTCCACGCACCACGGCAAACAGTGCGGTGTCGAGTGCAGCATTTTCACTATCGATATAACCCATGGCGACAGGGGCAGCGAGTGTCGGGCCAAAGCCCCCGCTGCACACTTTACCCACCGGTTTATCGttt < 4:178224/149‑1 (MQ=255)
tttCAAGGCCACCTTCTTTCCACGCACCACGGCAAACAGTGCGGTGTCGAGTGCAGCATTTTCACTATCGATATAACCCATGGCGACAGGGGCAGCGAGTGTCGGGCCAAAGCCCCCGCTGCACACTTTACCCACCGGTTTATCGTTTg > 2:303388/1‑149 (MQ=255)
cttCAACGCCACCTTCTTTCCCCGCACCAAGGCAAACAGTGCGGTGTCGAGTGCAGCATTTTCACTATCGATATAACCCATGGCGACAGGGGCAGCGAGTGTCGGGCCAAAGCCCCCGCTGCACACTTTACCCACCGGTTTATCGtt < 8:358847/146‑1 (MQ=255)
aaGGCCACCTTCTTTCCACGCACCACGGCAAACAGTGCGGTGTCGAGTGCAGCATTTTCACTATCGATATAACCCATGGCGACAGGGGCAGCGAGTGTCGGGCCAAAGCCCCCGCTGCACACTTTACCCACCGGTTTATCGTTTGCGt < 1:285672/148‑1 (MQ=255)
ccACCTTCTTTCCACGCACCACGGCAAACAGTGCGGTGTCGAGTGCAGCATTTTCACTATCGATATAACCCATGGCGACAGGGGCAGCGAGTGTCGGGCCAAAGCCCCCGCTGCACACTTTACCCACCGGTTTATCGTTTGCGTCGACa < 6:157817/149‑1 (MQ=255)
cACCTTCTTTCCACGCACCACGGCAAACAGTGCGGTGTCGAGTGCAGCATTTTCACTATCGATATAACCCATGGCGACAGGGGCAGCGAGTGTCGGGCCAAAGCCCCCGCTGCACACTTTACCCACCGGTTTATCGTTTGCGTCGACaa > 6:90423/1‑149 (MQ=255)
cACCTTCTTTCCACGCACCACGGCAAACAGTGCGGTGTCGAGTGCAGCATTTTCACTATCGATATAACCCATGGCGACAGGGGCAGCGAGTGTCGGGCCAAAGCCCCCGCTGCACACTTTACCCACCGGTTTATCGTTTGCGTCGACa < 8:458116/148‑1 (MQ=255)
ccTTCTTTCCACGCACCACGGCAAACAGTGCGGTGTCGAGTGCAGCATTTTCACTATCGATATAACCCATGGCGACAGGGGCAGCGAGTGTCGGGCCAAAGCCCCCGCTGCACACTTTACCCACCGGTTTATCGTTTGCGTCGACAATg > 1:350062/1‑149 (MQ=255)
cttcttTCCACGCACCACGGCAAACAGTGCGGTGTCGAGTGCAGCATTTTCACTATCGATATAACCCATGGCGACAGGGGCAGCGAGTGTCGGGCCAAAGCCCCCGCTGCACACTTTACCCACCGGTTTATCGTTTGCGTCGACAATg > 8:265995/1‑148 (MQ=255)
ttcttTCCACGCACCACGGCAAACAGTGCGGTGTCGAGTGCAGCATTTTCACTATCGATATAACCCATGGCGACAGGGGCAGCGAGTGCCGGGCCAAAGCCCCCGCTGCACACTTTACCCACCGGTTTATCGTTTGCGTCGACAATGTc > 4:78615/1‑149 (MQ=255)
tttCCACGCACCACGGCAAACAGTGCGGTGTCGAGTGCAGCATTTTCACTATCGATATAACCCATGGCGACAGGGGCAGCGAGTGTCGGGCCAAAGCCCCCGCTGCACACTTTACGCACCGGTTTATCGTTTGCGTCGACAATGTCCg > 6:100966/1‑148 (MQ=255)
tttCCACGCACCACGGCAAACAGTGCGGTGTCGAGTGCAGCATTTTCACTATCGATATAACCCATGGCGACAGGGGCAGCGAGTGTCGGGCCAAAGCCCCCGCTGCACACTTTACCCACCGGTTTATCGTTTGCGTCGACAATGTCCg > 2:95298/1‑148 (MQ=255)
ttCCACGCACCACGGCAAACAGTGCGGTGTCGAGTGCAGCATTTTCACTATCGATATAACCCATGGCGACAGGGGCAGCGAGTGTCGGGCCAAAGCCCCCGCTGCACACTTTACCCACCGGTTTATCGTTTGCGTCGACAATGTCCGc > 8:344966/1‑148 (MQ=255)
tCCACGCACCACGGCAAACAGTGCGGTGTCGAGTGCAGCATTTTCACTATCGATATAACCCATGGCGACAGGGGCAGCGAGTGTCGGGCCAAAGCCCCCGCTGCACACTTTACCCACCGGTTTATCGTTTGCGTCGACAATGTCCGc < 3:349953/147‑1 (MQ=255)
cACGCACCACGGCAAACAGTGCGGTGTCGAGTGCAGCATTTTCACTATCGATATAACCCATGGCGACAGGGGCAGCGAGTGTCGGGCCAAAGCCCCCGCTGCACACTTTACCCACCGGTTTATCGTTTGCGTCGACAATGTCCGCACCt > 4:345549/1‑149 (MQ=255)
aCGCACCACGGCAAACAGTGCGGTGTCGAGTGCAGCATTTTCACTATCGATATAACCCATGGCGACAGGGGCAGCGAGTGTCGGGCCAAAGCCCCCGCTGCACACTTTACCCACCGGTTTATCGTTTGCGTCGACAATGTCCGCACCtt > 4:26657/1‑149 (MQ=255)
aCGCACCACGGCAAACAGTGCGGTGTCGAGTGCAGCATTTTCACTATCGATATAACCCATGGCGACAGGGGCAGCGAGTGTCGGGCCAAAGCCCCCGCTGCACACTTTACCCACCGGTTTATCGTTTGCGTCGACAATGTCCGCACCtt > 5:148971/1‑149 (MQ=255)
aCGCACCACGGCAAACAGTGCGGTGTCGAGTGCAGCATTTTCACTATCGATATAACCCATGGCGACAGGGGCAGCGAGTGTCGGGCCAAAGCCCCCGCTGCACACTTTACCCACCGGTTTATCGTTTGCGTCGACAATGTCCGCACCt > 4:253233/1‑148 (MQ=255)
aCGCACCACGGCAAACAGTGCGGTGTCGAGTGCAGCATTTTCACTATCGATATAACCCATGGCGACAGGGGCAGCGAGTGTCGGGCCAAAGCCCCCGCTGCACACTTTACCCACCGGTTTATCGTTTGCGTCGACAATGTCCGCACCt > 3:433637/1‑148 (MQ=255)
cGGCAAACAGTGCGGTGTCGAGTGCTGCATTTTCACTATCGATATAACCCATCGCGACAGGGGCAGCGAGTGTCGGGCCAAAGCCCCCGCTGCACACTTTACCCACCGGTTTATCGTTTGCGTCGACAATGTCCGCACCTTCACGAACa < 1:359512/149‑1 (MQ=255)
cGGCAAACAGTGCGGTGTCGAGTGCAGCATTTTCACTATCGATATAACCCATGGCGACAGGGGCAGCGAGTGTCGGGCCAAAGCCCCCGCTGCACACTTTACCCACCGGTTTATCGTTTGCGTCGACAATGTCCGCACCTTCACGaa > 1:443442/1‑147 (MQ=255)
ggCAAACAGTGCGGTGTCGAGTGCAGCATTTTCACTATCGATATAACCCATGGCGACAGGGGCAGCGAGTGTCGGGCCAAAGCCCCCGCTGCACACTTTACCCACCGGTTTATCGTTTGCGTCGACAATGTCCGCACCTTCACGAACAg > 2:321175/1‑149 (MQ=255)
cAAACAGTGCGGAGTCGAGTGAAGCATTTTCACTATCGATATAACACATGGCGACAGGGGCAGCGAGTGTCGCGCCAAAGCCCCCGATGCACACTTTACCCACCGGTTTATCGTTTGCGTCGACAATGTCCCCAACATCACGAACAgg > 8:259872/1‑148 (MQ=255)
aGTGCGGTGTCGAGTGCAGCATTTTCACTATCGATATAACCCATGGCGACAGGGGCAGCGAGTGTCGGGCCAAAGCCCCCGCTGCACACTTTACCCACCGGTTTATCGTTTGCGTCGACAATGTCCGCACCTTCACGAACAGGCGTAc < 7:265995/148‑1 (MQ=255)
gTGCGGTGTCGAGTGCAGCATTTTCACTATCGATATAACCCATGGCGACAGGGGCAGCGAGTGTCGGGCCAAAGCCCCCGCTGCACACTTTACCCACCGGTTTATCGTTTGCGTCGACAATGTCCGCACCTTCACGAACAGGCGTACGc < 2:269866/149‑1 (MQ=255)
tgtCGAGTGCAGCATATTCACTATCGATATAACCCATGGCGACAGGGGCAGCGAGTGGCGGGCCAAAGCCCCCGCTGCACACTTTACCCACCGGTTTATCGTTTGCGTCGACAATGTCCGCACCTTCACGAAAAGGCGTACGCTCCTGc < 3:29243/149‑1 (MQ=255)
tCGAGTGCAGCATTTTCACTATCGATATAACCCATGGCGACAGGGGCAGCGAGTGTCGGGCCAAAGCCCCCGCTGCACACTTTACCCACCGGTTTATCGTTTGCGTCGACAATGTCCGCACCTTCACGAACAGGCGTACGCTCCTGCg < 3:240894/148‑1 (MQ=255)
gAGTGCAGCATTTTCACTATCGATATAACCCATGGCGACAGGGGCAGCGAGTGTCGGGCCAAAGCCCCCGCTGCACACTTTACCCACCGGTTTATCGTTTGCGTCGACAATGTCCGCACCTTCACGAACAGGCGTACGCTCCTGCg > 8:344989/1‑146 (MQ=255)
agcaTTTTCACTATCGATATAACCCATGGCGACAGGGGCAGCGAGTGTCGGGCCAAAGCCCCCGCTGCACACTTTACCCACCGGTTTATCGTTTGCGTCGACAATGTCCGCACCTTCACGAACAGGCGTACGCTCCTGCGGCAGCAGGc > 3:248259/1‑149 (MQ=255)
gcaTTTTCACTATCGATATAACCCATGGCGACAGGGGCAGCGAGTGTCGGGCCAAAGCCCCCGCTGCACACTTTACCCACCGGTTTATCGTTTGCGTCGACAATGTCCGCACCTTCACGAACAGGCGTACGCTCCTGCGGCAGCAGGcc > 6:53287/1‑149 (MQ=255)
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ACGAATATGTCTATGCTGCCCAAAACCTTCACAAAGCCGTTTCAGCCACGGTAGTAACGTGGTGTCACGAAAGGCATTTTGCTGACTTTCAAGGCCACCTTCTTTCCACGCACCACGGCAAACAGTGCGGTGTCGAGTGCAGCATGTTCACTATCGATATAACCCATGGCGACAGGGGCAGCGAGTGTCGGGCCAAAGCCCCCGCTGCACACTTTACCCACCGGTTTATCGTTTGCGTCGACAATGTCCGCACCTTCACGAACAGGCGTACGCTCCTGCGGCAGCAGGCC > NC_002947_CJ‑RC/1123980‑1124269
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| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
BRESEQ :: bam2aln output
AACGAATATGTCTATGCTGCCCAAAACCTTCACAAAGCCGTTTCAGCCACGGTAGTAACGTGGTGTCACGAAAGGCATTTTGCTGACTTTCAAGGCCACCTTCTTTCCACGCACCACGGCAAACAGTGCGGTGTCGAGTGCAGCATGTTCACTATCGATATAACCCATGGCGACAGGGGCAGCGAGTGTCGGGCCAAAGCCCCCGCTGCACACTTTACCCACCGGTTTATCGTTTGCGTCGACAATGTCCGCACCTTCACGAACAGGCGTACGCTCCTGCGGCAGCAGGCCGACA > NC_002947_CJ‑RC/1123979‑1124273
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AACGAATATGTCTATGCTGCCCAAAACCTTCACAAAGCCGTTTCAGCCACGGTAGTAACGTGGTGTCACGAAAGGCATTTTGCTGACTTTCAAGGCCACCTTCTTTCCACGCACCACGGCAAACAGTGCGGTGTCGAGTGCAGCATTTTCA < NB501016:282:H2V7GAFX2:2:21209:4505:6035/151‑1 (MQ=60)
CGAATATGTCTATGCTGCCCAAAACCTTCACAAAGCCGTTTCAGCCACGGTAGTAACGTGGTGTCACGAAAGGCATTTTGCTGACTTTCAAGGCCACCTTCTTTCCACGCACCACGGCAAACAGTGCGGTGTCGAGTGCAGCATTTTCACT > NB501016:282:H2V7GAFX2:1:11301:12704:16481/1‑151 (MQ=60)
CGAATATGTCTATGCTGCCCAAAACCTTCACAAAGCCGTTTCAGCCACGGTAGTAACGTGGTGTCACGAAAGGCATTTTGCTGACTTTCAAGGCCACCTTCTTTCCACGCACCACGGCAAACAGTGCGGTGTCGAGTGCAGCATTTTCACT > NB501016:282:H2V7GAFX2:1:11302:14158:13689/1‑151 (MQ=60)
GTGTATGCTGCCCAAAACGATCACAAAGGCGTTTGAGGCTGGGTAGTAACGTGGTGTCACGATAGGCATTTTGCTGACTTTCATGGCGTCCTTCTTTCCACGCTCCACGGCAAACAGTGCGGTGTCGAGTGCAGCATTTTCACTATCGATA < NB501016:282:H2V7GAFX2:3:21412:24328:2042/151‑1 (MQ=60)
GTCTATGCTGCCCAAAACCTTCACAAAGCCGTTTCAGCCACGGTAGTAACGTGGTGTCACGAAAGGCATTTTGCTGACTTTCAAGGCCACCTTCTTTCCACGCACCACGGCAAACAGTGCGGTGTCGAGTGCAGCATTTTCACTATCGAT < NB501016:282:H2V7GAFX2:3:11509:18462:18851/150‑1 (MQ=60)
GTCTATGCTGCCCAAAACCTTCACAAAGCCGTTTCAGCCACGGTAGTAACGTGGTGTCACGAAAGGCATTTTGCTGACTTTCAAGGCCACCTTCTTTCCACGCACCACGGCAAACAGTGCGGTGTCGAGTGCAGCATTTTCACTATCGAT > NB501016:282:H2V7GAFX2:2:11305:17034:3381/1‑150 (MQ=60)
GTCTATGCTGCCCAAAACCTTCACAAACCCGTTTCAGCCACGGTAGTAACGTGGTGTCACGAAAGGCATTTTGCTGACTTTCAAGGCCACCTTCTTTCCACGCACCACGGCAAACAGTGCGGTGTCGAGTGCAGCATTTTCACTATCGATA < NB501016:282:H2V7GAFX2:4:21610:24977:18698/151‑1 (MQ=60)
TATGCTGCCCAAAACCTTCACAAAGCCGTTTCAGCCACGGTAGTAACGTGGTGTCACGAAAGGCATTTTGCTGACTTTCAAGGCCACCTTCTTTCCACGCACCACGGCAAACAGTGCGGTGTCGAGTGCAGCATTTTCACTATCGATATA > NB501016:282:H2V7GAFX2:1:21105:8921:3713/1‑150 (MQ=60)
CCAAAACCTTCACAAAGCCGTTTCAGCCACGGTAGTAACGTGGTGTCACGAAAGGCATTTTGCTGACTTTCAAGGCCACCTTCTTTCCACGCACCACGGCAAACAGTGCGGTGTCGAGTGCAGCATTTTCACTATCGATATAACCCATGGC > NB501016:282:H2V7GAFX2:1:21105:9299:18665/1‑151 (MQ=60)
AAAACCTTCACAAAGCCGTTTCAGCCACGGTAGTAACGTGGTGTCACGAAAGGCATTTTGCTGACTTTCAAGGCCACCTTCTTTCCACGCACCACGGCAAACAGTGCGGTGTCGAGTGCAGCATTTTCACTATCGATATAACCCATGGCG > NB501016:282:H2V7GAFX2:2:11204:14939:5657/1‑150 (MQ=60)
AAACCTTCACAAAGCCGTTTCAGCCACGGTAGTAACGTGGTGTCACGAAAGGCATTTTGCTGACTTTCAAGGCCACCTTCTTTCCACGCACCACGGCAAACAGTGCGGTGTCGAGTGCAGCATTTTCACTATCGATATAACCCATGGCGAC < NB501016:282:H2V7GAFX2:4:11412:25631:14091/151‑1 (MQ=60)
CTTCACAAAGCCGTTTCAGCCACGGTAGTAACGTGGTGTCACGAAAGGCATTTTGCTGACTTTCAAGGCCACCTTCTTTCCACGCACCACGGCAAACAGTGCGGTGTCGAGTGCAGCATTTTCACTATCGATATAACCCATGGCGACAGGG > NB501016:282:H2V7GAFX2:4:21402:7105:14717/1‑151 (MQ=60)
TTCACAAAGCCGTTTCAGCCACGGTAGTAACGTGGTGTCACGAAAGGCATTTTGCTGACTTTCAAGGCCACCTTCTTTCCACGCACCACGGCAAACAGTGCGGTGTCGAGTGCAGCATTTTCACTATCGATATAACCCATGGCGACAG > NB501016:282:H2V7GAFX2:1:11101:12930:3517/1‑148 (MQ=60)
TCACAAAGCCGTTTCAGCCACGGTAGTAACGTGGTGTCACGAAAGGCATTTTGCTGACTTTCAAGGCCACCTTCTTTCCACGCACCACGGCAAACAGTGCGGTGTCGAGTGCAGCATTTTCACTATCGATATAAC < NB501016:282:H2V7GAFX2:1:21311:12555:11624/135‑1 (MQ=60)
CACAAAGCCGTTTCAGCCACGGTAGTAACGTGGTGTCACGAAAGGCATTTTGCTGACTTTCAAGGCCACCTTCTTTCCACGCACCACGGCAAACAGTGCGGTGTCGAGTGCAGCATTTTCACTATCGATATAACCCATGGCGACAGGGGC > NB501016:282:H2V7GAFX2:1:21201:16509:13104/1‑150 (MQ=60)
AAAGCCGTTTCAGCCACGGTAGTAACGTGGTGTCACGAAAGGCATTTTGCTGACTTTCAAGGCCACCTTCTTTCCACGCACCACGGCAAACAGTGCGGTGTCGAGTGCAGCATTTTCACTATCGATATAACCCATGGCGACAGGGGCAGCG < NB501016:282:H2V7GAFX2:3:11507:3169:1328/151‑1 (MQ=60)
AAAGCCGTTTCAGCCACGGTAGTAACGTGGTGTCACGAAAGGCATTTTGCTGACTTTCAAGGCCACCTTCTTTCCACGCACCACGGCAAACAGTGCGGTGTCGAGTGCAGCATTTTCACTATCGATATAACCCATGGCGACAGGGGCAGCG < NB501016:282:H2V7GAFX2:4:11504:22326:3222/151‑1 (MQ=60)
AGCCGTTTCAGCCACGGTAGTAACGTGGTGTCACGAAAGGCATTTTGCTGACTTTCAAGGCCACCTTCTTTCCACGCACCACGGCAAACAGTGCGGTGTCGAGTGCAGCATTTTCACTATCGATATAACCCATGGCGACAGGGGCAGCGAG < NB501016:282:H2V7GAFX2:1:21107:20614:8590/151‑1 (MQ=60)
GCCGTTTCAGCCACGGTAGTAACGTGGTGTCACGAAAGGCATTTTGCTGACTTTCAAGGCCACCTTCTTTCCACGCACCACGGCAAACAGTGCGGTGTCGAGTGCAGCATTTTCACTATCGATATAACCCATGGCGACAGGGGCAGCGAGT > NB501016:282:H2V7GAFX2:2:21302:11685:14059/1‑151 (MQ=60)
GTTTCAGCCACGGTAGTAACGTGGTGTCACGAAAGGCATTTTGCTGACTTTCAAGGCCACCTTCTTTCCACGCACCACGGCAAACAGTGCGGTGTCGAGTGCAGCATTTTCACTATCGATATAACCCATGGCGACAGGGGCAGCGAGTGTC > NB501016:282:H2V7GAFX2:3:11409:2277:20330/1‑151 (MQ=60)
GTTTCAGCCACGGTAGTAACGTGGTGTCACGAAAGGCATTTTGCTGACTTTCAAGGCCACCTTCTTTCCACGCACCACGGCAAACAGTGCGGTGTCGAGTGCAGCATTTTCACTATCGATATAACCCATGGCGACAGGGGCAGCGAGTGTC > NB501016:282:H2V7GAFX2:4:21612:2948:9004/1‑151 (MQ=60)
AGCCACGGTAGTAACGTGGTGTCACGAAAGGCATTTTGCTGACTTTCAAGGCCACCTTCTTTCCACGCACCACGGCAAACAGTGCGGTGTCGAGTGCAGCATTTTCACTATCGATATAACCCATGGCGACAGGGGCAGCGAGTGTCGGGCC < NB501016:282:H2V7GAFX2:2:21205:9090:18957/151‑1 (MQ=60)
ACGGTAGTAACGTGGTGTCACGAAAGGCATTTTGCTGACTTTCAAGGCCACCTTCTTTCCACGCACCACGGCAAACAGTGCGGTGTCGAGTGCAGCATTTTCACTATCGATATAACCCATGGCGACAGGGGCAGCGAGTGTCGGGCCAAAG < NB501016:282:H2V7GAFX2:4:21410:3329:3660/151‑1 (MQ=60)
CACGAAAGGCATTTTGCTGACTTTCAAGGCCACCTTCTTTCCACGCACCACGGCAAACAGTGCGGTGTCGAGTGCAGCATTTTCACTATCGATATAACCCATGGCGACAGGGGCAGCGAGTGTCGGGCCAAAGCCCCCGCTGCACACTTTA < NB501016:282:H2V7GAFX2:4:11611:17790:13580/151‑1 (MQ=60)
ACGAAAGGCATTTTGCTGACTTTCAAGGCCACCTTCTTTCCACGCACCACGGCAAACAGTGCGGTGTCGAGTGCAGCATTTTCACTATCGATATAACCCATGGCGACAGGGGCAGCGAGTGTCGGGCCAAAGCCCCCGCTGCACACTTTAC < NB501016:282:H2V7GAFX2:1:11105:9978:20348/151‑1 (MQ=60)
CGAAAGGCATTTTGCTGACTTTCAAGGCCACCTTCTTTCCACGCACCACGGCAAACAGTGCGGTGTCGAGTGCAGCATTTTCACTATCGATATAACCCATGGCGACAGGGGCAGCGAGTGTCGGGCCAAAGCCCCCGCTGCACACTTTACC < NB501016:282:H2V7GAFX2:3:21401:17062:16018/151‑1 (MQ=60)
CGAAAGGCATTTTGCTGACTTTCAAGGCCACCTTCTTTCCACGCACCACGGCAAACAGTGCGGTGTCGAGTGCAGCATTTTCACTATCGATATAACCCATGGCGACAGGGGCAGCGAGTGTCGGGCCAAAGCCCCCGCTGCACACTTTACC > NB501016:282:H2V7GAFX2:4:21607:20589:10853/1‑151 (MQ=60)
AAGGCATTTTGCTGACTTTCAAGGCCACCTTCTTTCCACGCACCACGGCAAACAGTGCGGTGTCGAGTGCAGCATTTTCACTATCGATATAACCCATGGCGACAGGGGCAGCGAGTGTCGGGCCAAAGCCCCCGCTGCACACTTTACCCAC > NB501016:282:H2V7GAFX2:2:21203:9561:14117/1‑151 (MQ=60)
GCATTTTGCTGACTTTCAAGGCCACCTTCTTTCCACGCACCACGGCAAACAGGGCGGTGTCGAGTGCTGCATTTTCACTATCGATATAACCCATGGCGACAGGGGCAGCGAGTGTCGGGCCAAAGCCCCCGCTGCACACTTTACCCACCGG < NB501016:282:H2V7GAFX2:2:11209:26223:19327/151‑1 (MQ=60)
ATTTTGCTGACTTTCAAGGCCACCTTCTTTCCACGCACCACGGCAAACAGTGCGGTGTCGAGTGCAGCATTTTCACTATCGATATAACCCATGGCGACAGGGGCAGCGAGTGTCGGGCCAAAGCCCCCGCTGCACACTTTACCCACCGGTT < NB501016:282:H2V7GAFX2:3:21512:21494:16199/151‑1 (MQ=60)
ATTTTGCTGACTTTCAAGGCCACCTTCTTTCCACGCACCACGGCAAACAGTGCGGTGTCGAGTGCAGCATTTTCACTATCGATATAACCCATGGCGACAGGGGCAGCGAGTGTCGGGCCAAAGCCCCCGCTGCACACTTTACCCACCGGTT > NB501016:282:H2V7GAFX2:1:11104:6806:20219/1‑151 (MQ=60)
TGCTGACTTTCAAGGCCACCTTCTTTCCACGCACCACGGCAAACAGTGCGGTGTCGAGTGCAGCATTTTCACTATCGATATAACCCATGGCGACAGGGGCAGCGAGTGTCGGGCCAAAGCCCCCGCTGCACACTTTACCCACCGGTTTATC > NB501016:282:H2V7GAFX2:4:21611:25316:4400/1‑151 (MQ=60)
GCTGACTTTCAAGGCCACCTTCTTTCCACGCACCACGGCAAACAGTGCGGTGTCGAGTGCAGCATTTTCACTATCGATATAACCCATGGCGACAGGGGCAGCGAGTGTCGGGCCAAAGCCCCCGCTGCACACTTTACCCACCGGTTTATCG < NB501016:282:H2V7GAFX2:4:11501:16987:5308/151‑1 (MQ=60)
CTGACTTTCAAGGCCACCTTCTTTCCACGCACCACGGCAAACAGTGCGGTGTCGAGTGCAGCATTTTCACTATCGATATAACCCATGGCGACAGGGGCAGCGAGTGTCGGGCCAAAGCCCCCGCTGCACACTTTACCCACCGGTTTATCGT > NB501016:282:H2V7GAFX2:2:21208:21740:19953/1‑151 (MQ=60)
ACTTTCAAGGCCACCTTCTTTCCACGCACCACGGCAAACAGTGCGGTGTCGAGTGCAGCATTTTCACTATCGATATAACCCATGGCGACAGGGGCAGCGAGTGTCGGGCCAAAGCCCCCGCTGCACACTTTACCCACCGGTTTATCGTTTG < NB501016:282:H2V7GAFX2:1:11205:25275:19797/151‑1 (MQ=60)
CAAGGCCACCTTCTTTCCACGCACCACGGCAAACAGTGCGGTGTCGAGTGCAGCATTTTCACTATCGATATAACCCATGGCGACAGGGGCAGCGAGTGTCGGGCCAAAGCCCCCGCTGCACACTTTACCCACCGGTTTATCGTTTGCGTC < NB501016:282:H2V7GAFX2:1:21108:9298:8851/150‑1 (MQ=60)
TCCTTCTTTCCACGCACCACGGCAAACAGTGCGGTGTCGAGTGCAGCATTTTCACTATCGATATAACCCATGGCGACAGGGGCAGCGAGTGTCGGGCCAAAGCCCCCGCTGCACACTTTACCCACCGGTTTATCGTTTGCGTCGACAATGT > NB501016:282:H2V7GAFX2:1:21206:9809:10967/1‑151 (MQ=60)
TTCCACGCACCACGGCAAACAGTGCGGTGTCGAGTGCAGCATTTTCACTATCGATATAACCCATGGCGACAGGGGCAGCGAGTGTCGGGCCAAAGCCCCCGCTGCACACTTTACCCACCGGTTTATCGTTTGCGTCGACAATGTCCGCA < NB501016:282:H2V7GAFX2:2:21210:16977:6621/149‑1 (MQ=60)
CACGCACCACGGCAAACAGTGCGGTGTCGAGTGCAGCATTTTCACTATCGATATAACCCATGGCGACAGGGGCAGCGAGTGTCGGGCCAAAGCCCCCGCTGCACACTTTACCCACCGGTTTATCGTTTGCGTCGACAATGTCCGCACCTTC > NB501016:282:H2V7GAFX2:3:11512:14246:2075/1‑151 (MQ=60)
CACGCACCACGGCAAACAGTGCGGTGTCGAGTGCAGCATTTTCACTATCGATATAACCCATGGCGACAGGGGCAGCGAGTGTCGGGCCAAAGCCCCCGCTGCACACTTTACCCACCGGTTTATCGTTTGCGTCGACAATGTCCGCACCTT > NB501016:282:H2V7GAFX2:2:21311:7564:17526/1‑150 (MQ=60)
ACGGCAAACAGTGCGGTGTCGAGTGCTGCATTTTCACTATCGATATAACCCATCGCGACAGGGGCAGCGAGTGTCGGGCCAAAGCCCCCGCTGCACACTTTACCCACCGGTTTATCGTTTGCGTCGACAATGTCCGCACCTTCACGAACAG < NB501016:282:H2V7GAFX2:1:21208:7539:2462/151‑1 (MQ=60)
ACGGCAAACAGTGCGGTGTCGAGTGCAGCATTTTCACTATCGATATAACCCATGGCGACAGGGGCAGCGAGTGTCGGGCCAAAGCCCCCGCTGCACACTTTACCCACCGGTTTATCGTTTGCGTCGACAATGTCCGCACCTTCACGAAC > NB501016:282:H2V7GAFX2:1:21310:16931:6867/1‑149 (MQ=60)
ACAGTGCGGTGTCGAGTGCAGCATTTTCACTATCGATATAACCCATGGCGACAGGGGCAGCGAGTGTCGGGCCAAAGCCCCCGCTGCACACTTTACCCACCGGTTTATCGTTTGCGTCGACAATGTCCGCACCTTCACGAACAGGCGTACG < NB501016:282:H2V7GAFX2:4:21405:3849:12742/151‑1 (MQ=60)
GTGTCGAGTGCAGCATATTCACTATCGATATAACCCATGGCGACAGGGGCAGCGAGTGGCGGGCCAAAGCCCCCGCTGCACACTTTACCCACCGGTTTATCGTTTGCGTCGACAATGTCCGCACCTTCACGAAAAGGCGTACGCTCCTGCG < NB501016:282:H2V7GAFX2:2:11105:4815:15159/151‑1 (MQ=60)
GTCGAGTGCAGCATTTTCACTATCGATATAACCCATGGCGACAGGGGCAGCGAGTGTCGGGCCAAAGCCCCCGCTGCACACTTTACCCACCGGTTTATCGTTTGCGTCGACAATGTCCGCACCTTCACGAACAGGCGTACGCTCCTGCGG < NB501016:282:H2V7GAFX2:2:21102:13952:10532/150‑1 (MQ=60)
CAGCATTTTCACTATCGATATAACCCATGGCGACAGGGGCAGCGAGTGTCGGGCCAAAGCCCCCGCTGCACACTTTACCCACCGGTTTATCGTTTGCGTCGACAATGTCCGCACCTTCACGAACAGGCGTACGCTCCTGCGGCAGCAGGCC > NB501016:282:H2V7GAFX2:2:21103:16102:15314/1‑151 (MQ=60)
ATTTTCACTATCGATATAACCCATGGCGACAGGGGCAGCGAGTGTCGGGCCAAAGCCCCCGCTGCACACTTTACCCACCGGTTTATCGTTTGCGTCGACAATGTCCGCACCTTCACGAACAGGCGTACGCTCCTGCGGCAGCAGGCCGACA < NB501016:282:H2V7GAFX2:4:21401:23248:6961/151‑1 (MQ=60)
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AACGAATATGTCTATGCTGCCCAAAACCTTCACAAAGCCGTTTCAGCCACGGTAGTAACGTGGTGTCACGAAAGGCATTTTGCTGACTTTCAAGGCCACCTTCTTTCCACGCACCACGGCAAACAGTGCGGTGTCGAGTGCAGCATGTTCACTATCGATATAACCCATGGCGACAGGGGCAGCGAGTGTCGGGCCAAAGCCCCCGCTGCACACTTTACCCACCGGTTTATCGTTTGCGTCGACAATGTCCGCACCTTCACGAACAGGCGTACGCTCCTGCGGCAGCAGGCCGACA > NC_002947_CJ‑RC/1123979‑1124273
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| Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 0 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
