Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A3 F14 I1 R1
|
57 |
86.1 |
3667460 |
98.7% |
3619783 |
146.2 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| RA |
NC_002947_CJ‑RC |
3,845,705 |
+G |
intergenic (‑72/+26) |
PP_3394 ← / ← PP_3395 |
3‑hydroxy‑3‑methylglutaryl‑CoA lyase/LysR family transcriptional regulator |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NC_002947_CJ‑RC | 3,845,703 | 1 | . | G | 100.0%
| 80.7
/ NA
| 24 | intergenic (‑70/+28) | PP_3394/PP_3395 | 3‑hydroxy‑3‑methylglutaryl‑CoA lyase/LysR family transcriptional regulator |
| Reads supporting (aligned to +/- strand): ref base . (0/0); new base G (12/12); total (12/12) |
GCTGCTGTCGGCATGATCACTTGCAGGCTCTGCAAGCCATCGCGCAGGCCGACTTCATTGATTGTTATTGTTGTCATCGCGGTCTCTCTGTCTGAAGCGTTGCGCCAGACTAAGAGCTGGATGACGGGCAGAAAAGACGTGTTTCGC‑GGC‑TGATCCATCGTCAGCCACGATGGATCAGCCCGCGCCCTGCCAGGCCGGTGCACGCAGCAACAGGTGGTCAAGCAGGCGCCGAGCCGACAGCGAGAGCGTG‑TGCCGGTCGCGCATGCAGATGACG > NC_002947_CJ‑RC/3845557‑3845830
|
gctgctGTCGGCATGATCACTTGCAGGCTCTGCAAGCCATCGCGCAGGCCGACTTCATTGATTGTTATTGTTGTCATCGCGGTCTCTCTGTCTGAAGCGTTGCGCCAGACTAAGAGCTGGATGACGGGCAGAAAAGACGTGTTTcgc < 7:414448/147‑1 (MQ=255)
ctgctgTCGGCATGATCACTTGCAGGCTCTGCAAGCCATCGCGCAGGCCGACTTCATTGATTGTTATTGTTGTCATCGCGGTCTCTCTGTCTGAAGCGTTGCGCCAGACTAAGAGCTGGATGACGGGCAGAAAAGACGTGTTTCGC‑ggg < 6:361999/149‑2 (MQ=255)
tgctgTCGGCATGATCACTTGCAGGCTCTGCAAGCCATCGCGCAGGCCGACTTCATTGATTGTTATTGTTGTCATCGCGGTCTCTCTGTCTGAAGCGTTGCGCCAGACTAAGAGCTGGATGACGGGCAGAAAAGACGTGTTTCGC‑ggg < 8:64393/148‑2 (MQ=255)
gctgTCGGCATGATCACTTGCAGGCTCTGCAAGCCATCGCGCAGGCCGACTTCATTGATTGTTATTGTTGTCATCGCGGTCTCTCTGTCTGAAGCGTTGCGCCAGACTAAGAGCTGGATGACGGGCAGAAAAGACGTGTTTCGC‑ggg > 6:17397/1‑146 (MQ=255)
ctgTCGGCATGATCACTTGCAGGCTCTGCAAGCCATCGCGCAGGCCGACTTCATTGATTGTTATTGTTGTCATCGCGGTCTCTCTGTCTGAAGCGTTGCGCCAGACTAAGAGCTGGATGACGGGCAGAAAAGACGTGTTTCGC‑gggct < 5:289945/148‑4 (MQ=255)
gTCGGCATGATCACTTGCAGGCTCTGCAAGCCATCGCGCAGGCCGACTTCATTGATTGTTATTGTTGTCATCGCGGTCTCTCTGTCTGAAGCGTTGCGCCAGACTAAGAGCTGGATGACGGGCAGAAAAGACGTGTTTcgccggctta > 4:181828/1‑141 (MQ=255)
tCGGCATGATCACTTGCAGGCTCTGCAAGCCATCGCGCAGGCCGACTTCATTGATTGTTATTGTTGTCATCGCGGTCTCTCTGTCTGAAGCGTTGCGCCAGACTAAGAGCTGGATGACGGGCAGAAAAGACGTGTTTCGC‑gggcatat > 8:185589/1‑142 (MQ=255)
tCGGCATGATCACTTGCAGGCTCTGCAAGCCATCGCGCAGGCCGACTTCATTGATTGTTATTGTTGTCATCGCGGTCTCTCTGTCTGAAGCGTTGCGCCAGACTAAGAGCTGGATGACGGGCAAAAAAGACGTGTTTCGC‑gggcggttg > 1:363500/1‑142 (MQ=255)
cGGCATGATCACTTGCAGGCTCTGCAAGCCATCGCGCAGGCCGACTTCATTGATTGTTATTGTTGTCATCGCGGTCTCTCTGTCTGAAGCGTTGCGCCAGACTAAGAGCTGTATGACGGGAAGAAAAGACGTGTTTCGCGGGC‑TGAt < 7:75968/147‑1 (MQ=255)
cGGCATGATCACTTGCAGGCTCTGCAAGCCATCGCGCAGGCCGACTTCATTGATTGTTATTGTTGTCATCGCGGTCTCTCTGTCTGAAGCGTTGCGCCAGACTAAGAGCTGGATGACGGGCAGAAAAGACGTGTTTCGCGGGC‑TGATc < 8:307144/148‑1 (MQ=255)
ggCATGATCACTTGCAGGCTCTGCAAGCCATCGCGCAGGCCGACTTCATTGATTGTTATTGTTGTCATCGCGGTCTCTCTGTCTGAAGCGTTGCGCCAGACTAAGAGCTGGATGACGGGCAGAAAAGACGTGTTTCGCGGGC‑TGATcc < 4:331125/148‑1 (MQ=255)
cATGATCACTTGCAGGCTCTGCAAGCCATCGCGCAGGCCGACTTCATTGATTGTTATTGTTGTCATCGCGGTCTCTCTGTCTGAAGCGTTGCGCCAGACTAAGAGCTGGATGACGGGCAGAAAAGACGTGTTTCGCGGGC‑TGATCCATc < 5:97850/149‑1 (MQ=255)
aTCACTTGCAGGCTCTGCAAGCCATCGCGCAGGCCGACTTCATTGATTGTTATTGTTGTCATCGCGGTCTCTCTGTCTGAAGCGTTGCGCCAGACTAAGAGCTGGATGACGGGCAGAAAAGACGTGTTTCGCGGGC‑TGATCCATCGTc < 2:400999/148‑1 (MQ=255)
aTCACTTGCAGGCTCTGCAAGCCATCGCGCAGGCCGACTTCATTGATTGTTATTGTTGTCATCGCGGTCTCTCTGTCTGAAGCGTTGCGCCAGACTAAGAGCTGGATGACGGGCAGAAAAGACGTGTTTCGCGGGC‑TGATCCATCGTCa < 4:176596/149‑1 (MQ=255)
cAGGCTCTGCAAGCCATCGCGCAGGCCGACTTCATTGTTTGTTATTGTTGTCATCGCGGTCTCTCTGTCTGAAGCGTTGCGCCAGACTAAGAGCTGGATGACGGGCAGAAAAGACGTGTTTCGCGGGC‑TGATCCATCGTCAGCCACGa < 2:171683/148‑1 (MQ=255)
aGGCTCTGCAAGCCATCGCGCAGGCCGACTTCATTGATTGTTATTGTTGTCATCGCGGTCTCTCTGTCTGAAGCGTTGCGCCAGACTAAGAGCTGGATGACGGGCAGAAAAGACGTGTTTCGCGGGC‑TGATCCATCGTCAGCCACGAt < 7:323129/148‑1 (MQ=255)
aGGCTCTGCAAGCCATCGCGCAGGCCGACTTCATTGATTGTTATTGTTGTCATCGCGGTCTCTCTGTCTGAAGCGTTGCGCCAGACTAAGAGCTGGATGACGGGCAGAAAAGACGTGTTTCGCGGGC‑TGATCCATCGTCAGCCACGATg < 1:293590/149‑1 (MQ=255)
gCTCTGCAAGCCATCGCGCAGGCCGACTTCATTGATTGTTATTGTTGTCATCGCGGTCTCTCTGTCTGAAGCGTTGCGCCAGACTAAGAGCTGGATGACGGGCAGAAAAGACGTGTTTCGCGGGC‑TGATCCATCGTCAGCCACGATgg < 8:314443/148‑1 (MQ=255)
gCTCTGCAAGCCATCGCGCAGGCCGACTTCATTGATTGTTATTGTTGTCATCGCGGTCTCTCTGTCTGAAGCGTTGCGCCAGACTAAGAGCTGGATGACGGGCAGAAAAGACGTGTTTCGCGGGC‑TGATCCATCGTCAGCCACGATGGa < 6:429662/149‑1 (MQ=255)
gCAAGCCATCGCGCAGGCCGACTTCATTGATTGTTATTGTTGTCATCGCGGTCTCTCTGTCTGAAGCGTTGCGCCAGACTAAGAGCTGGATGACGGGCAGAAAAGACGTGTTTCGCGGGC‑TGATACATAGTGAGGCACGATgggtaaa > 7:262866/1‑143 (MQ=255)
cAAGCCATCGCGCAGGCCGACTTCATTGATTGTTATTGTTGTCATCGCGGTCTCTCTGTCTGAAGCGTTGCGCCAGACTAAGAGCTGGATGACGGGCAGAAAAGACGTGTTTCGCGGGC‑TGATACATCGTCAGCCACGATGGATCAGc > 7:354907/1‑148 (MQ=255)
cATCGCGCAGGCCGACTTCATTGATTGTTATTGTTGTCATCGCGGTCTCTCTGTCTGAAGCGTTGCGCCAGACTAAGAGCTGGATGACGGGCAGAAAAGACGTGTTTCGCGGGC‑TGATCCATAGTCAGCCACGATGGATAAGCCcgcg > 8:394348/1‑148 (MQ=255)
tCGCGCAGGCCGACTTCATTGATTGTTATTGTTGTCATCGCGGTCTCTCTGTCTGAAGCGTTGCGCCAGACTAAGAGCTGGATGACGGGCAGAAAAGACGTGTTTCGCGGGC‑TGAACCATAGTAAGCCACCATGGATAAGCCCCCGcc > 8:260382/1‑148 (MQ=255)
ttCATTGATTGTTATTGTTGTCATCGCGGTCTCTCTGTCTGAAGCGTTGCGCCAGACTAAGAGCTGGATGACGGGCAGAAAAGACGTGTTTCGCGGGC‑TTATCCATAGTCAGCCACGATGGATAAGCCCGCCCCCAGCCCCGCCGGt > 8:455412/1‑147 (MQ=255)
attgattgTTATTGTTGTCATCGCGGTCTCTCTGTCTGAAGCGTTGCGCCAGACTAAGAGCTGGATGACGGGCAGAAAAGACGTGTTTCGCGGGC‑TGATACATAGTGAGCCCCGATGGATCAGCCCGCCCCCAGCCCGGCCGGTGCACg > 6:100206/1‑149 (MQ=255)
gttattgttGTCATCGCGGTCTCTCTGTCTGAAGCGTTGCGCCAGACTAAGAGCTGGATGACGGGCAGAAAAGACGTGTTTCGCGGGC‑TGAAACATAGTCAGCCCCGATGGATCAGCCCGCGCCCAGCCAGGCCCGTGCACGCCGCaa > 6:334324/1‑148 (MQ=255)
tctgtcagAAGCGTTGCGCCAGACTAAGAGCTGGATGACGGGCAGAAAAGACGTGTTTCGCGGGC‑ATATACAAAGTCAGCCCCCAAAGATAAACCCCCCCCCTGCCACGCCCGTGCACCCCGCCACAAGTTGTAAAACACGCgccgacc > 2:95728/1‑147 (MQ=255)
acgCGTTCCGCCAGACTAAGAGCTGGCTCACGGGCACAAAAGACCTGTTTCGCGGGC‑TCATCCATCGCCAGCCACGATGGATCAGCCCGCGCCCTGCCAGGCCGGTGCACGCAGCAACAGGTGGTCAAGCAGGCGCCGAGCCGACAGCg < 2:358864/147‑1 (MQ=255)
aaGCGTTGCGCCAGACTAAGAGCTGGATGACGGGCAGAAAAGACGTGTTTCGCGGGC‑ATATACATAGTCAGCCACCATGGATAAGCCCCCGCCCAGCCACGCCCGTGCACGCAGCAACAGGTGGGCAAGCACGCGCCCCGCCGACAGCg > 2:7006/1‑149 (MQ=255)
gcCAGACTAAGAGCTGGATGACGGGCAGAAAAGACGTGTTTCGCGGGCATAAACAAACG‑GACCCCCCCAGGATAAGCCCCCCCCCTACCAAGCCCGTGGACGCCGCAACAGCTGGTGAAACAGGCGCCCCCCCCACAACGACAGCgtg‑t > 6:78796/1‑149 (MQ=255)
agagCTGGATGACGGGCAGAAAAGACGTGTTTCGCGGGC‑TGATACAAAGTCAGCCACCCAGGGTAAACCCCCCCCCAGCCCAGCCCGTGGACCCCCCCACACGTGGTGAAACACGCGCCCCGCCGACCACCAGAGCGTGTTGCCggagc > 2:100548/1‑146 (MQ=255)
cAGAAAAGACGTGTTTCGCGGGC‑TGATACAAAGTGAGCCACCATGGATAACCCCCCCCCCAGCCACGCCGGTGGCCGCAGCAAAAGGTGGTCAAACAGGCGCCGCGCCGACACCGCGAGCGTG‑TGGCGGGCGCGCCAGCAGATGAcc > 8:93293/1‑146 (MQ=255)
|
GCTGCTGTCGGCATGATCACTTGCAGGCTCTGCAAGCCATCGCGCAGGCCGACTTCATTGATTGTTATTGTTGTCATCGCGGTCTCTCTGTCTGAAGCGTTGCGCCAGACTAAGAGCTGGATGACGGGCAGAAAAGACGTGTTTCGC‑GGC‑TGATCCATCGTCAGCCACGATGGATCAGCCCGCGCCCTGCCAGGCCGGTGCACGCAGCAACAGGTGGTCAAGCAGGCGCCGAGCCGACAGCGAGAGCGTG‑TGCCGGTCGCGCATGCAGATGACG > NC_002947_CJ‑RC/3845557‑3845830
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
N/A
