Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A5 F61 I1 R1 63 66.6 2847048 98.6% 2807189 146.5

Breseq alignment

N/A

GATK/CNVnator alignment

BRESEQ :: bam2aln output
GTTTGGTGGCTACACAGGGACTTGAACCCCGGACCCCAGCATTATGAATGCTATGCTCTAACCAACTGAGCTATGTAGCCGATGGCGCGCATTATTCTCTTGAACGCCCCCTCTGTCAACACTCATTTC‑AAAAAAAATTTGCACGCTTTCAAAAACTTAGCGGCCAGCCCCGGTTTCAGCGCACCACAAGCCAGTGCCCGAGCACGCCCAGCAACTGCAACTGCTGGGCTGCAGCCAGGGATTGCAGGCTTTGGCCAGGCTGGTCGAGGTTGAAGTCGCCGCT  >  NC_002947_CJ‑RC/813221‑813503
                                                                                                                                         |                                                                                                                                                  
GTTTGGTGGCTACACAGGGACTTGAACCCCGGACCCCAGCATTATGAATGCTATGCTCTAACCAACTGAGCTATGTAGCCGATGGCGCGCATTATTCTCTTGAACGCCCCCTCTGTCAACACTCATTTC‑‑AAAAAAATTTGCACGCTTTCA                                                                                                                                      >  NB501016:282:H2V7GAFX2:4:21403:22248:2128/1‑150 (MQ=60)
     GTGGCTACACAGGGACTTGAACCCCGGACCCCAGCATTATGAATGCTATGCTCTAACCAACTGAGCTATGTAGCCGATGGCGCGCATTATTCTCTTGAACGCCCCCTCTGTCAACACTCATTTC‑AAAAAAAATTTGCACGCTTTCAAAAAC                                                                                                                                 <  NB501016:282:H2V7GAFX2:4:11408:9311:13859/151‑1 (MQ=60)
            CACAGGGACTTGAACCCCGGACCCCAGCATTATGAATGCTATGCTCTAACCAACTGAGCTATGTAGCCGATGGCGCGCATTATTCTCTTGAACGCCCCCTCTGTCAACACTCATTTC‑AAAAAAAATTTGCACGCTTTCAAAAACTTAGCGG                                                                                                                          >  NB501016:282:H2V7GAFX2:4:11510:15795:12922/1‑151 (MQ=60)
            CACAGGGACTTGAACCCCGGACCCCAGCATTATGAATGCTATGCTCTAACCAACTGAGCTATGTAGCCGATGGCGCGCATTATTCTCTTGAACGCCCCCTCTGTCAACACTCATTTC‑‑AAAAAAATTTGCACGCTTTC                                                                                                                                       <  NB501016:282:H2V7GAFX2:4:21501:4205:13662/137‑1 (MQ=60)
                   ACTTGAACCCCGGACCCCAGCATTATGAATGCTATGCTCTAACCAACTGAGCTATGTAGCCGATGGCGCGCATTATTCTCTTGAACGCCCCCTCTGTCAACACTCATTTC‑‑AAAAAAATTTGCACGCTTTCAAAAACTTAGCGGCCAGCCCC                                                                                                                  >  NB501016:282:H2V7GAFX2:4:11403:22364:19409/1‑151 (MQ=60)
                      TGAACCCCGGACCCCAGCATTATGAATGCTATGCTCTAACCAACTGAGCTATGTAGCCGATGGCGCGCATTATTCTCTTGAACGCCCCCTCTGTCAACACTCATTTC‑‑AAAAAAATTTGCACGCTTTCAAAAACTTAGCGGCCAGCCCCGGT                                                                                                               >  NB501016:282:H2V7GAFX2:4:21504:18533:9227/1‑151 (MQ=60)
                      TGAACCCCGGACCCCAGCATTATGAATGCTATGCTCTAACCAACTGAGCTATGAAGCCGATGGCGCGCATTATTCTCTTGAACGCCCCCTCTGTCAACACTCATTTC‑AAAAAAAATTTGCACGCTTTCAAAAACTTAGCGGCCAGCCCCGG                                                                                                                >  NB501016:282:H2V7GAFX2:4:21402:1776:12444/1‑151 (MQ=60)
                          CCCCGGACCCCAGCATTATGAATGCTATGCTCTAACCAACTGAGCTATGTAGCCGATGGCGCGCATTATTCTCTTGAACGCCCCCTCTGTCAACACTCATTTC‑‑AAAAAAATTTGCACGCTTTCAAAAACTTAGCGGCCAGCCCCGGTTTCA                                                                                                           <  NB501016:282:H2V7GAFX2:2:11203:22414:4708/151‑1 (MQ=60)
                           CCCGGACCCCAGCATTATGAATGCTATGCTCTAACCAACTGAGCTATGTAGCCGATGGCGCGCATTATTCTCTTGAACGCCCCCTCTGTCAACACTCATTTC‑‑AAAAAAATTTGCACGCTTTCAAAAACTTAGCGGCCAGCCCCGGTTTCAG                                                                                                          <  NB501016:282:H2V7GAFX2:4:11403:9625:1696/151‑1 (MQ=60)
                           CCCGGACCCCAGCATTATGAATGCTATGCTCTAACCAACTGAGCTATGTAGCCGATGGCGCGCATTATTCTCTTGAACGCCCCCTCTGTCAACACTCATTTC‑‑AAAAAAATTTGCACGCTTTCAAAAACTTAGCGGCCAGCCCCGGTTTCAG                                                                                                          <  NB501016:282:H2V7GAFX2:3:11503:3496:7345/151‑1 (MQ=60)
                             CGGACCCCAGCATTATGAATGCTATGCTCTAACCAACTGAGCTATGTAGCCGATGGCGCGCATTATTCTCTTGAACGCCCCCTCTGTCAACACTCATTTC‑AAAAAAAATTTGCACGCTTTCAAAAACTTAGCGGCCAGCCCCGGTTTCAGC                                                                                                         <  NB501016:282:H2V7GAFX2:3:21406:17082:3720/151‑1 (MQ=60)
                               GACCCCAGCATTATGAATGCTATGCTCTAACCAACTGAGCTATGTAGCCGATGGCGCGCATTATTCTCTTGAACGCCCCCTCTGTCAACACTCATTTC‑‑AAAAAAATTTGCACGCTTTCAAAAACTTAGCGGCCAGCCCCGGTTTCAGCGCA                                                                                                      <  NB501016:282:H2V7GAFX2:3:21402:22085:10255/151‑1 (MQ=60)
                                 CCCCAGCATTATGAATGCTATGCTCTAACCAACTGAGCTATGTAGCCGATGGCGCGCATTATTCTCTTGAACGCCCCCTCTGTCAACACTCATTTC‑AAAAAAAATTTGCACGCTTTCAAAAACTTAGCGGCCAGCCCCGGTTTCAGCGCAC                                                                                                     <  NB501016:282:H2V7GAFX2:2:11207:15185:3682/151‑1 (MQ=60)
                                   CCAGCATTATGAATGCTATGCTCTAACCAACTGAGCTATGTAGCCGATGGCGCGCATTATTCTCTTGAACGCCCCCTCTGTCAACACTCATTTC‑AAAAAAAATTTGCACGCTTTCAAAAACTTAGCGGCCAGCCCCGGTTTCAGCGCACC                                                                                                    >  NB501016:282:H2V7GAFX2:3:21509:9908:7868/1‑150 (MQ=60)
                                   CCAGCATTATGAATGCTATGCTCTAACCAACTGAGCTATGTAGCCGATGGCGCGCATTATTCTCTTGAACGCCCCCTCTGTCAACACTCATTTC‑‑AAAAAAATTTGCACGCTTTCAAAAACTTAGCGGCCAGCCCCGGTTTCAGCGCACCAC                                                                                                  <  NB501016:282:H2V7GAFX2:3:21406:26134:3847/151‑1 (MQ=60)
                                    CAGCATTATGAATGCTATGCTCTAACCAACTGAGCTATGTAGCCGATGGCGCGCATTATTCTCTTGAACGCCCCCTCTGTCAACACTCATTTC‑AAAAAAAATTTGCACGCTTTCAAAAACTTAGCGGCCAGCCCCGGTTTCAGCGCACCAC                                                                                                  <  NB501016:282:H2V7GAFX2:1:11206:4713:3710/151‑1 (MQ=60)
                                      GCATTATGAATGCTATGCTCTAACCAACTGAGCTATGTAGCCGATGGCGCGCATTATTCTCTTGAACGCCCCCTCTGTCAACACTCATTTC‑‑AAAAAAATTTGCACGCTTTCAAAAACTTAGCGGCCAGCCCCGGTTTCAGCGCACCACA                                                                                                 >  NB501016:282:H2V7GAFX2:4:21405:21417:10078/1‑149 (MQ=60)
                                                     TGCTCTAACCAACTGAGCTATGTAGCCGATGGCGCGCATTATTCTCTTGAACGCCCCCTCTGTCAACACTCATTTC‑AAAAAAAATTTGCACGCTTTCAAAAACTTAGCGGCCAGCCCCGGTTTCAGCGCACCACAAGCCAGTGCCCGAGC                                                                                  >  NB501016:282:H2V7GAFX2:3:11512:12686:9399/1‑150 (MQ=60)
                                                      CCTCTAACCAACTGAGCTATTTAGCCTATTGCGCGCATTATTCTCATGAACGCCCCCTCTGTCAACACTCATTTC‑‑AAAAAAATTTCCACGCTTTCAAAACCTTAGCGTCCAGCCCCGGTTTCAGCGCACCACAAGCCAGTGCCCGAGCACG                                                                               <  NB501016:282:H2V7GAFX2:3:21406:21211:11541/151‑1 (MQ=60)
                                                           AACCAACTGAGCTATGTAGCCGATGGCGCGCATTATTCTCTTGAACGCCCCCTCTGTCAACACTCATTTC‑‑AAAAAAATTTGCACGCTTTCAAAAACTTAGCGGCCAGCCCCGGTTTCAGCGCACCACAAGCCAGTGCCCGAGCACGCCCAG                                                                          <  NB501016:282:H2V7GAFX2:2:11103:9768:9232/151‑1 (MQ=60)
                                                           AACCAACTGAGCTATGTAGCCGATGGCGCGCATTATTCTCTTGAACGCCCCCTCTGTCAACACTCATTTC‑‑AAAAAAATTTGCACGCTTTCAAAAACTTAGCGGCCAGCCCCGGTTTCAGCGCACCACAAGCCAGTGCCCGAGCACGCCC                                                                            <  NB501016:282:H2V7GAFX2:2:11107:14363:11240/149‑1 (MQ=60)
                                                                      CTATGTAGCCGATGGCGCGCATTATTCTCTTGAACGCCCCCTCTGTCAACACTCATTTC‑AAAAAAAATTTGCACGCTTTCAAAAACTTAGCGGCCAGCCCCGGTTTCAGCGCACCACAAGCCAGTGCCCGAGCACGCCCAGCAACTGCAAC                                                                >  NB501016:282:H2V7GAFX2:2:11307:5715:5253/1‑151 (MQ=60)
                                                                       TATGTAGCCGATGGCGCGCATTATTCTCTTGAACGCCCCCTCTGTCAACACTCATTTC‑AAAAAAAATTTGCACGCTTTCAAAAACTTAGCGGCCAGCCCCGGTTTCAGCGCACCACAAGCCAGTGCCCGAGCACGCCCAGCAACTGCAACT                                                               >  NB501016:282:H2V7GAFX2:2:21210:23335:8483/1‑151 (MQ=60)
                                                                              CCGATGGCGCGCATTATTCTCTTGAACGCCCCCTCTGTCAACACTCATTTC‑AAAAAAAATTTGCACGCTTTCAAAAACTTAGCGGCCAGCCCCGGTTTCAGCGCACCACAAGCCAGTGCCCGAGCACGCCCAGCAACTGCAACTGCTGGGC                                                        <  NB501016:282:H2V7GAFX2:4:11409:6237:7541/151‑1 (MQ=60)
                                                                               CGATGGCGCGCATTATTCTCTTGAACGCCCCCTCTGTCAACACTCATTTC‑AAAAAAAATTTGCACGCTTTCAAAAACTTAGCGGCCAGCCCCGGTTTCAGCGCACCACAAGCCAGTGCCCGAGCACGCCCAGCAACTGCAACTGCTGGGCT                                                       >  NB501016:282:H2V7GAFX2:2:21308:6233:1370/1‑151 (MQ=60)
                                                                                GATGGCGCGCATTATTCTCTTGAACGCCCCCTCTGTCAACACTCATTTC‑‑AAAAAAATTTGCACGCTTTCAAAAACTTAGCGGCCAGCCCCGGTTTCAGCGCACCACAAGCCAGTGCCCGAGCACGCCCAGCAACTGCAACTGCTGGGCTGC                                                     >  NB501016:282:H2V7GAFX2:1:11104:9998:5324/1‑151 (MQ=60)
                                                                                             ATTCTCTTGAACGCCCCCTCTGTCAACACTCATTTC‑‑AAAAAAATTTGCACGCTTTCAAAAACTTAGCGGCCAGCCCCGGTTTCAGCGCACCACAAGCCAGTGCCCGAGCACGCCCAGCAACTGCAACTGCTGGGCTGCAGCCAGGGATTG                                         <  NB501016:282:H2V7GAFX2:3:11608:5621:4171/150‑1 (MQ=60)
                                                                                             ATTCTCTTGAACGCCCCCTCTGTCAACACTCATTTC‑‑AAAAAAATTTGCACGCTTTCAAAAACTTAGCGGCCAGCCCCGGTTTCAGCGCACCACAAGCCAGTGCCCGAGCACGCCCAGCAACTGCAACTGCTGGGCTGCAGCCAGGGATTG                                         <  NB501016:282:H2V7GAFX2:3:11504:21950:5103/150‑1 (MQ=60)
                                                                                              TTCTCTTGAACGCCCCCTCTGTCAACACTCATTTC‑‑AAAAAAATTTGCACGCTTTCAAAAACTTAGCGGCCAGCCCCGGTTTCAGCGCACCACAAGCCAGTGCCCGAGCACGCCCAGCAACTGCAACTGCTGGGCTGCAGCCAGGGATTGC                                        >  NB501016:282:H2V7GAFX2:4:11507:7106:9422/1‑150 (MQ=60)
                                                                                                    TGAACGCCCCCTCTGTCAACACTCATTTC‑‑AAAAAAATTTGCACGCTTTCAAAAACTTAGCGGCCAGCCCCGGTTTCAGCGCACCACAAGCCAGTGCCCGAGCACGCCCAGCAACTGCAACTGCTGGGCTGCAGCCAGGGATTGCAGGCTTT                                 >  NB501016:282:H2V7GAFX2:1:21211:1362:2854/1‑151 (MQ=60)
                                                                                                     GAACGCCCCCTCTGTCAACACTCATTTCAAAAAAAAATTTGCACGCTTTCAAAAACTTAGCGGCCAGCCCCGGTTTCAGCGCACCACAAGCCAGTGCCCGAGCACGCCCAGCAACTGCAACTGCTGGGCTGCAGCCAGGGATTGCAGGCTT                                  >  NB501016:282:H2V7GAFX2:4:11607:13574:18746/1‑151 (MQ=60)
                                                                                                      AACGCCCCCTCTGTCAACACTCATTTC‑AAAAAAAATTTGCACGCTTTCAAAAACTTAGCGGCCAGCCCCGGTTTCAGCGCACCACAAGCCAGTGCCCGAGCACGCCCAGCAACTGCAACTGCTGGGCTGCAGCCAGGGATTGCAGGCTTTG                                >  NB501016:282:H2V7GAFX2:3:21407:19376:12653/1‑151 (MQ=60)
                                                                                                        CGCCCCCTCTGTCAACACTCATTTC‑‑AAAAAAATTTGCACGCTTTCAAAAACTTAGCGGCCAGCCCCGGTTTCAGCGCACCACAAGCCAGTGCCCGAGCACGCCCAGCAACTGCAACTGCTGGG                                                         >  NB501016:282:H2V7GAFX2:3:11603:11461:15567/1‑123 (MQ=60)
                                                                                                          CCCCCTCTGTCAACACTCATTTC‑‑AAAAAAATTTGCACGCTTTCAAAAACTTAGCGGCCAGCCCCGGTTTCAGCGCACCACAAGCCAGTGCCCGAGCACGCCCAGCAACTGCAACTGCTGGGCTGCAGCCAGGGATTGCAGGCTTTGGCC                             >  NB501016:282:H2V7GAFX2:1:11105:25749:15977/1‑149 (MQ=60)
                                                                                                           CCCCTCTGTCAACACTCATTTC‑‑AAAAAAATTTGCACGCTTTCAAAAACTTAGCGGCCAGCCCCGGTTTCAGCGCACCACAAGCCAGTGCCCGAGCACGCCCAGCAACTGCAACTGCTGGGCTGCAGCCAGGGATTGCAGGCTTTGGCCAGG                          <  NB501016:282:H2V7GAFX2:1:21307:20370:19643/151‑1 (MQ=60)
                                                                                                                    CAACACTCATTTC‑AAAAAAAATTTGCACGCTTTCAAAAACTTAGCGGCCAGCCCCGGTTTCAGCGCACCACAAGCCAGTGCCCGAGCACGCCCAGCAACTGCAACTGCTGGGCTGCAGCCAGGGATTGAAGGCTTTGGCCAGGCTGGTCG                   >  NB501016:282:H2V7GAFX2:1:11208:21048:7378/1‑150 (MQ=60)
                                                                                                                     AACACTCATTTC‑‑AAAAAAATTTGCACGCTTTCAAAAACTTAGCGGCCAGCCCCGGTTTCAGCGCACCACAAGCCAGTGCCCGAGCACGCCCAGCAACTGCAACTGCTGGGCTGCAGCCAGGGATTGCAGGCTTTGGCCAGGCTGGTCGAGG                <  NB501016:282:H2V7GAFX2:4:11507:24735:12771/151‑1 (MQ=60)
                                                                                                                            ATTTC‑AAAAAAAATTTGCACGCTTTCAAAAACTTAGCGGCCAGCCCCGGTTTCAGCGCACCACAAGCCAGTGCCCGAGCACGCCCAGCAACTGCAACTGCTGGGCTGCAGCCAGGGATTGCAGGCTTTGGCCAGGCTGGTCGAG                 >  NB501016:282:H2V7GAFX2:4:11408:1289:19522/1‑144 (MQ=60)
                                                                                                                            ATTTC‑AAAAAAAATTTGCACGCTTTCAAAAACTTAGCGGCCAGCCCCGGTTTCAGCGCACCACAAGCAAGTGCCCGAGCACGCCCAGCAACTGCAACTGCTGGGCTGCAGCCAGGGATTGCAGGCTTTGGCCAGGCTGGTCGAG                 >  NB501016:282:H2V7GAFX2:4:11407:26874:19527/1‑144 (MQ=60)
                                                                                                                            ATTTC‑‑AAAAAAATTTGCACGCTTTCAAAAACTTAGCGGCCAGCCCCGGTTTCAGCGCACCACAAGCCAGTGCCCGAGCACGCCCAGCAACTGCAACTGCTGGGCTGCAGCCAGGGATTGCAGGCTTTGGCCAGGCTGGTCGAGGTTGAAGT         >  NB501016:282:H2V7GAFX2:3:21401:17597:2724/1‑151 (MQ=60)
                                                                                                                                C‑AAAAAAAATTTGCACGCTTTCAAAAACTTAGCGGCCAGCCCCGGTTTCAGCGCACCACAAGCCAGTGCCCGAGCACGCCCAGCAACTGCAACTGCTGGGCTGCAGCCAGGGATTGCAGGCTTTGGCCAGGCTGGTCGAGGTTGAAGTCGC      >  NB501016:282:H2V7GAFX2:2:21102:14478:6738/1‑151 (MQ=60)
                                                                                                                                  CAAAAAAATTTGCACGCTTTCAAAAACTTAGCGGCCAGCCCCGGTTTCAGCGCACCACAAGCCAGTGCCCGAGCACGCCCAGCAACTGCAACTGCTGGGCTGCAGCCAGGGATTGCAGGCTTTGGCCAGGCTGGTCGAGG                >  NB501016:282:H2V7GAFX2:3:21612:4110:8680/1‑140 (MQ=60)
                                                                                                                                     AAAAATTTGCACGCTTTCAAAAACTTAGCGGCCAGCCCCGGTTTCAGCGCACCACAAGCCAGTGCCCGAGCACGCCCAGCAACTGCAACTGCTGGGCTGCAGCCAGGGATTGCAGGCTTTGGCCAGGCTGGTCGAGGTTGAAGTCGCCGCT  >  NB501016:282:H2V7GAFX2:1:21103:12663:3815/1‑151 (MQ=60)
                                                                                                                                         |                                                                                                                                                  
GTTTGGTGGCTACACAGGGACTTGAACCCCGGACCCCAGCATTATGAATGCTATGCTCTAACCAACTGAGCTATGTAGCCGATGGCGCGCATTATTCTCTTGAACGCCCCCTCTGTCAACACTCATTTC‑AAAAAAAATTTGCACGCTTTCAAAAACTTAGCGGCCAGCCCCGGTTTCAGCGCACCACAAGCCAGTGCCCGAGCACGCCCAGCAACTGCAACTGCTGGGCTGCAGCCAGGGATTGCAGGCTTTGGCCAGGCTGGTCGAGGTTGAAGTCGCCGCT  >  NC_002947_CJ‑RC/813221‑813503

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 0 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑