Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A5 F61 I1 R1 63 66.6 2847048 98.6% 2807189 146.5

Breseq alignment

N/A

GATK/CNVnator alignment

BRESEQ :: bam2aln output
GATGGGGCGGAAGCGGGCGGCAAGGGATTCGTAGTGGGTACCGGTAGACAGGTGGGGCAGTGGGGCTTGGGCGGTCATCGCAGTTCTCCTCGATTGATGCGATTGCTGACGGTGACGCTCTCGCAAACTTCGTGCCTTGCAGTGAATTCCTTTTAAATCAATGGGTTGTGATCATTCTGGTGGGGCGGGCTGTTCGCTCGCCGACAGCTTGCTGAATGACTGTTGGTGGGCGGTCAATTGCGTTTTCCGGGGCAACTGTTGGCCGAGGGTCAGTGGTTCAACAGCTTGTTGGC  >  NC_002947_CJ‑RC/3147791‑3148083
                                                                                                                                               |                                                                                                                                                     
GATGGGGCGGAAGCGGGCGGCAAGGGATTCGTAGTGGGTACCGGTAGACAGGTGGGGCAGTGGGGCTTGGGCGGTCATCGCAGTTCTCCTCGATTGATGCGATTGCTGACGGTGACGCTCTCGCAAACTTCGTGCCTTGCAGTGAATTCCT                                                                                                                                                >  NB501016:282:H2V7GAFX2:1:21109:23441:19603/1‑151 (MQ=60)
   GGGGCGGAAGCGGGCGGCAAGGGATTCGTAGTGGGTACCGGTAGACAGGTGGGGCAGTGGGGCTTGGGCGGTCATCGCAGTTCTCCTCGATTGATGCGATTGCTGACGGTGACGCTCTCGCAAACTTCGTGCCTTGCAGTAAATTCCTTT                                                                                                                                              <  NB501016:282:H2V7GAFX2:2:11110:13619:3598/150‑1 (MQ=60)
    GGGCGGAAGCGGGCGGCAAGGGATTCGTAGTGGGTACCGGTAGACAGGTGGGGCAGTGGGGCTTGGGCGGTCATCGCAGTTCTCCTCGATTGATGCGATTGCTGACGGTGACGCTCTCGCAAACTTCGTGCCTTGCAGTAAATTCCTTTTA                                                                                                                                            <  NB501016:282:H2V7GAFX2:4:21407:13000:10294/151‑1 (MQ=60)
     GGCGGAAGCGGGCGGCAAGGGATTCGTAGTGGGTACCGGTAGACAGGTGGGGCAGTGGGGCTTGGGCGGTCATCGCAGTTCTCCTCGATTGATGCGATTGCTGACGGTGACGCTCTCGCAAACTTCGTGCCTTGCAGTAAATTCCTTTTAA                                                                                                                                           <  NB501016:282:H2V7GAFX2:3:11501:14297:10424/151‑1 (MQ=60)
     GGCGGAAGCGGGCGGCAAGGGATTCGTAGTGGGTACCGGTAGACAGGTGGGGCAGTGGGGCTTGGGCGGTCATCGCAGTTCTCCTCGATTGATGCGATTGCTGACGGTGACGCTCTCGCAAACTTCGTGCCTTGCAGTAAATTCCTTTTA                                                                                                                                            >  NB501016:282:H2V7GAFX2:2:11205:19858:17691/1‑150 (MQ=60)
       CGGAAGCGGGCGGCAAGGGATTCGTAGTGGGTACCGGTAGACAGGTGGGGCAGTGGGGCTTGGGCGGTCATCGCAGTTCTCCTCGATTGATGCGATTGCTGACGGTGACGCTCTCGCAAACTTCGTGCCTTGCAGTAAATTCCTTTTAAAT                                                                                                                                         <  NB501016:282:H2V7GAFX2:1:21208:6527:2900/151‑1 (MQ=60)
                   GCAAGGGATTCGTAGTGGGTACCGGTAGACAGGTGGGGCAGTGGGGCTTGGGCGGTCATCGCAGTTCTCCTCGATTGATGCGATTGCTGACGGTGACGCTCTCGCAAACTTCGTGCCTTGCAGTGAATTCCTTTTAAATCAATGGGTGGTG                                                                                                                             >  NB501016:282:H2V7GAFX2:1:21208:19059:1316/1‑151 (MQ=60)
                       GGGATTCGTAGTGGGTACCGGTAGACAGGTGGGGCAGTGGGGCTTGGGCGGTCATCGCAGTTCTCCTCGATTGATGCGATTGCTGACGGTGACGCTCTCGCAAACTTCGTGCCTTGCAGTGAATTCCTTTTAAATCAATG                                                                                                                                    >  NB501016:282:H2V7GAFX2:4:21511:19162:12641/1‑140 (MQ=60)
                       GGGATTCGTAGTGGGTACCGGTAGACAGGTGGGGCAGTGGGGCTTGGGCGGTCATCGCAGTTCTCCTCGATTGATGCGATTGCTGACGGTGACGCTCTCGCAAACTTCGTGCCTTGCAGTAAATTCCTTTTAAATCAATGGGTTGTGATCA                                                                                                                         <  NB501016:282:H2V7GAFX2:3:11412:24629:4193/151‑1 (MQ=60)
                          ATTCGTAGTGGGTACCGGTAGACAGGTGGGGCAGTGGGTCTTGGGCGGTCATCGCAGTTCTCCTCGATTGATGCGATTGCTGACGGTGACGCTCTCGCAAACTTCGTGCCTTGCAGTGAATTCCTTTTAAATCAATGGGTTGTGATCATTC                                                                                                                      >  NB501016:282:H2V7GAFX2:4:21505:20783:15492/1‑151 (MQ=60)
                                     GTACCGGTAGACAGGTGGGGCAGTGGGGCTTGGGCGGTCATCGCAGTTCTCCTCGATTGATGCGATTGCTGACGGTGACGCTCTCGCAAACTTCGTGCCTTGCAGTGAATTCCTTTTAAATCAATGGGTTGTGATCATTCTGGTGGGGCGG                                                                                                           >  NB501016:282:H2V7GAFX2:3:11505:2987:3437/1‑151 (MQ=60)
                                     GTACCGGTAGACAGGTGGGGCAGTGGGGCTTGGGCGGTCATCGCAGTTCTCCTCGATTGATGCGATTGCTGACGGTGACGCTCTCGCAAACTTCGTGCCTTGCAGTGAATTCCTTTTAAATCAATGGGTTGTGATCATTCTGGTGGGGCGG                                                                                                           >  NB501016:282:H2V7GAFX2:4:11406:11042:3990/1‑151 (MQ=60)
                                          GGTAGACAGGTGGGGCAGTGGGGCTTGGGCGGTCATCGCAGTTCTCCTCGATTGATGCGATTGCTGACGGTGACGCTCTCGCAAACTTCGTGCCTTGCAGTGAATTCCTTTTAAATCAATGGGTTGTGATCATTCTGGTGGGGCGGGCTGT                                                                                                      <  NB501016:282:H2V7GAFX2:1:11310:8897:9798/151‑1 (MQ=60)
                                             AGACAGGTGGGGCAGTGGGGCTTGGGCGGTCATCGCAGTTCTCCTCGATTGATGCGATTGCTGACGGTGACGCTCTCGCAAACTTCGTGCCTTGCAGTAAATTCCTTTTAAATCAATGGGTTGTGATCATTCTGGTGGGGCGGGCTGTTCG                                                                                                   <  NB501016:282:H2V7GAFX2:3:11502:11840:6837/151‑1 (MQ=60)
                                                   GTGGGGCAGTGGGGCTTGGGCGGTCATCGCAGTTCTCCTCGATTGATGCGATTGCTGACGGTGACGCTCTCGCAAACTTCGTGCCTTGCAGTAAATTCCTTTTAAATCAATGGGTTGTGATCATTCTGGTGGGGCGGGCTGTTCGCTCGCC                                                                                             <  NB501016:282:H2V7GAFX2:4:11510:20611:7588/151‑1 (MQ=60)
                                                   GTGGGGCAGTGGGGCTTGGGCGGTCATCGCAGTTCTCCTCGATTGATGCGATTGCTGACGGTGACGCTCTCGCAAACTTCGTGCCTTGCAGTAAATTCCTTTTAAATCAATGGGTTGTGATCATTCTGGTGGGGCGGGCTGTTCGCTCGCC                                                                                             >  NB501016:282:H2V7GAFX2:3:21606:20227:12725/1‑151 (MQ=60)
                                                           GTGGGGCTTGGGCGGTCATCGCAGTTCTCCTCGATTGATGCGATTGCTGACGGTGACGCTCTCGCAAACTTCGTGCCTTGCAGTGAATTCCTTTTAAATCAATGGGTTGTGATCATTCTGGTGGGGCGGGCTGTTCGCTCGCCGACAGCTT                                                                                     <  NB501016:282:H2V7GAFX2:3:11402:7683:3694/151‑1 (MQ=60)
                                                                GCTTGGGCGGTCATCGCAGTTCTCCTCGATTGATGCGATTACTGACGGTGACGCTCTCGCAAACTTCGTGCCTTGCAGTAAATTCCTTTTAAATCAATGGGTTGTGATCATTCTGGTGGGGCGGGCTGTTCGCTCGCCGACAGCTTGCTG                                                                                 >  NB501016:282:H2V7GAFX2:4:21402:25650:5008/1‑150 (MQ=60)
                                                                   TGGGCGGTCATCGCAGTTCTCCTCGATTGATGCGATTGCTGACGGTGACGCTCTCGCAAACTTCGTGCCTTGCAGTAAATTCCTTTTAAATCAATGGGTTGTGATCATTCTGGTGGGGCGGGCTGTTCGCTCGCCGACAGCTTGCTGAATG                                                                             >  NB501016:282:H2V7GAFX2:3:11604:20278:7755/1‑151 (MQ=60)
                                                                   TGGGCGGTCATCGCAGTTCTCCTCGATTGATGCGATTGCTGACGGTGACGCTCTCGCAAACTTCGTGCCTTGCAGTAAATTCCTTTTAAACCAATGGGTTGTGATCATTCTGGTGGGGCGGGCTGTTCGCTCGCCGACAGCTTGCTGAAT                                                                              <  NB501016:282:H2V7GAFX2:4:21602:5078:6113/150‑1 (MQ=60)
                                                                     GGCGGTCATCGCAGTTCTCCTAGATTGATGCGATTGCTGACGGTGACGCTCTCGCAAACTTCGTGCCTTTCAGTAAATTCCTTTTAAATCAATGGGTTGTGATCATTCTGGTGGGGCGGGCTGTTCGCTCGCCGACAGCTTGCTGAATGAC                                                                           <  NB501016:282:H2V7GAFX2:1:11201:20180:5537/151‑1 (MQ=60)
                                                                           CATCGCAGTTCTCCTCGATTGATGCGATTGCTGACGGTGACGCTCTCGCAAACTTCGTGCCTTGCAGTAAATTCCTTTTAAATCAATGGGTTGTGATCATTCTGGTGGGGCGGGCTGTTCGCTCGCCGACAGCTTGCTGAATGACTGTTGG                                                                     >  NB501016:282:H2V7GAFX2:2:11208:5144:12869/1‑151 (MQ=60)
                                                                              CGCAGTTCTCCTCGATTGATGCGATTGCTGACGGTGACGCTCTCGCAAACTTCGTGCCTTGCAGTAAATTCCTTTTAAATCAATGGGTTGTGATCATTCTGGTGGGGCTGGCTGTTCGCTCGCCGACAGCTTGCTGAATGACTGTTGGTG                                                                   <  NB501016:282:H2V7GAFX2:1:11304:14315:16265/150‑1 (MQ=60)
                                                                                CAGTTCTCCTCGATTGATGCGATTGCTGACGGTGACGCTCTCGCAAACTTCGTGCCTTGCAGTGAATTCCTTTTAAATCAATGGGTTGTGATCATTCTGGTGGGGCGGGCTGTTCGCTCGCCGACAGCTTGCTGAATGACTGTTGGTGGGC                                                                <  NB501016:282:H2V7GAFX2:2:21112:8372:8719/151‑1 (MQ=60)
                                                                                 AGTTCTCCTCGATTGATGCGATTGCTGACGGTGACGCTCTCGCAAACTTCGTGCCTTGCAGTAAATTCCTTTTAAATCAATGGGTTGTGATCATTCTGGTGGGGCGGGCTGTTCGCTCGCCGACAGCTTGCTGAATGACTGTTGGTGGGCG                                                               <  NB501016:282:H2V7GAFX2:3:21512:2526:16104/151‑1 (MQ=60)
                                                                                       CCTCGATTGATGCGATTGCTGACGGTGACGCTCTCGCAAACTTCGTGCCTTGCAGTTAATTCCTTTTAAATCAATGGGTTGTGATCATTCTGGTGGGGCGGGCTGTTCGCccaccaacagtcattcagcaagctgtcggcgagcgaacag                                                          <  NB501016:282:H2V7GAFX2:2:21207:21677:7521/150‑41 (MQ=60)
                                                                                       CCTCGATTGATGCGATTGCTGACGGTGACGCTCTCGCAAACTTCGTGCCTTGCAGTAAATTCCTTTTAAATCAATGGGTTGTGATCATTCTGGTGGGGCGGGCTGTTCGCTCGCCGACAGCTTGCTGAATGACTGTTGGTGGGCGGTCAAT                                                         >  NB501016:282:H2V7GAFX2:1:11306:12749:16559/1‑151 (MQ=60)
                                                                                        CTCGATTGATGCGATTGCTGACGGTGACGCTCTCGCAAACTTCGTGCCTTGCAGTGAATTCCTTTTAAATCAATGGGTTGTGATCATTCTGGTGGGGCGGGCTGTTCGCTCGCCGACAGCTTGCTGAATGACTGTTGGTGGGCGGTCAATT                                                        >  NB501016:282:H2V7GAFX2:4:21510:24425:5701/1‑151 (MQ=60)
                                                                                              TGATGCGATTGCTGACGGTGACGCTCTCGCAAACTTCGTGCCTTGCAGTGAATTCCTTTTAAATCAATGGGTTGTGATCATTCTGGTGGGGCGGGCTGTTCGCTCGCCGACAGCTTGCTGAATGACTGTTGGTGGGCGGTCAATTGCGTTT                                                  >  NB501016:282:H2V7GAFX2:1:11312:18568:3063/1‑151 (MQ=60)
                                                                                              TGATGCGATTGCTGACGGTGACGCTCTCGCAAACTTCGTGCCTTGCAGTGAATTCCTTTTAAATCAATGGGTTGTGATCATTCTGGTCGGGCGGGCTGTTCGCTCGCCGACAGCTTGCTGAATGACTGTTGGTGGGCGGTCAATTGCGTTT                                                  >  NB501016:282:H2V7GAFX2:3:11401:16832:18009/1‑151 (MQ=60)
                                                                                              TGATGCGATTGCTGACGGTGACGCTCTCGCAAACTTCGTGCCTTGCAGTAAATTCCTTTTAAATCAATGGGTTGTGATCATTCTGGTGGGGCGGGCTGTTCGCTCGCCGACAGCTTGCTGAATGACTGTTGGTGGGCGGTCAATTGCGTTT                                                  >  NB501016:282:H2V7GAFX2:3:11509:13720:17448/1‑151 (MQ=60)
                                                                                                ATGCGATTGCTGACGGTGACGCTCTCGCAAACTTCGTGCCTTGCAGTAAATTCCTTTTAAATCAATGGGTTGTGATCATTCTGGTGGGGCGGGCTGTTCGCTCGCCGACAGCTTGCTGAATGACTGTTGGTGGGCGGTCAATTGCGTTTTC                                                >  NB501016:282:H2V7GAFX2:2:21303:25159:13890/1‑151 (MQ=60)
                                                                                                ATGCGATTGCTGACGGTGACGCTCTCGCAAACTTCGTGCCTTGCAGTAAATTCCTTTTAAATCAATGGGTTGTGATCATTCTGGTGGGGCGGGCTGTTCGCTCGCCGACAGCTTGCTGAATGACTGTTGGTGGGCGGTCAATTGCGTTTTC                                                >  NB501016:282:H2V7GAFX2:4:11405:9841:11282/1‑151 (MQ=60)
                                                                                                  GCGATTGCTGACGGTGACGCTCTCGCAAACTTCGTGCCTTGCAGTGAATTCCTTTTAAATCAATGGGTTGTGATCATTCTGGTGGGGCGGGCTGTTCGCTCGCCGACAGCTTGCTGAATGACTGTTGGTGGGCGGTCAATTGCGTTTTCCG                                              <  NB501016:282:H2V7GAFX2:1:21208:19412:5024/151‑1 (MQ=60)
                                                                                                  GCGATTGCTGACGGTGACGCTCTCGCAAACTTCGTGCCTTGCAGTAAATTCCTTTTAAATCAATGGGTTGTGATCATTCTGGTGGGGCGGGCTGTTCGCTCGCCGACAGCTTGCTGAATGACTGTTGGTGGGCGGTCAATTGCGTTTTCC                                               <  NB501016:282:H2V7GAFX2:2:21111:14980:2674/150‑1 (MQ=60)
                                                                                                        GCTGACGGTGACGCTCTCGCAAACTTCGTGCCTTGCAGTAAATTCCTTTTAAATCAATGGGTTGTGATCATTCTGGTGGGGCGGGCTGTTCGCTCGCCGACAGCTTGCTGAATGACTGTTGGTGGGCGGTCAATTGCGTTTTCCGGGGCA                                         >  NB501016:282:H2V7GAFX2:2:11205:10020:5666/1‑150 (MQ=60)
                                                                                                                   CGCTCTCGCAAACTTCGTGCCTTGCAGTGAATTCCTTTTAAATCAATGGGTTGTGATCATTCTGGTGGGGCGGGCTGTTCGCTCGCCGACAGCTTGCTGAATGACTGTTGGTGGGCGGTCAATTGCGTTTTCCGGGGCAACTGTTGGCCG                              >  NB501016:282:H2V7GAFX2:4:11607:4985:11612/1‑150 (MQ=60)
                                                                                                                    GCTCTCGCAAACTTCGTGCCTTGCAGTAAATTCCTTTTAAATCAATGGGTTGTGATCATTCTGGTGGGGCGGGCTGTTCGCTCGCCGACAGCTTGCTGAATGACTGTTGGTGGGCGGTCAATTGCGTTTTCCGGGGCAACTGTTGGCCGAG                            <  NB501016:282:H2V7GAFX2:1:21305:7582:3217/151‑1 (MQ=60)
                                                                                                                       CTCGCAAACTTCGTGCCTTGCAGTGAATTCCTTTTAAATCAATGGGTTGTGATCATTCTGGTGGGGCGGGCTGTTCGCTCGCCGACAGCTTGCTGAATGACTGTTGGTGGGCGGTCAATTGCGTTTTCCGGGGCAACTGTTGGCCGAGGGT                         >  NB501016:282:H2V7GAFX2:1:21204:25071:6892/1‑151 (MQ=60)
                                                                                                                         CGCAAACTTCGTGCCTTGCAGTAAATTCCTTTTAAATCAATGGGTTGTGATCATTCTGGTGGGGCGGGCTGTTCGCTCGCCGACAGCTTGCTGAATGACTGTTGGTGGGCGGTCAATTGCGTTTTCCGGGGCAACTGTTGGCCGAGGG                          <  NB501016:282:H2V7GAFX2:3:11606:13734:13788/148‑1 (MQ=60)
                                                                                                                           CAAACTTCGTGCCTTGCAGTAAATTCCTTTTAAATCAATGGGTTGTGATCATTCTGGTGGGGCGGGCTGTTCGCTCGCCGACAGCTTGCTGAATGACTGTTGGTGGGCGGTCAATTGCGTTTTCCGGGGCAACTGTTGGCCGAGGGTCAGT                     >  NB501016:282:H2V7GAFX2:1:11102:25034:19138/1‑151 (MQ=60)
                                                                                                                           CAAACTTCGTGCCTTGAAGTGAATTCCTTTTAAATCAATGGGTTGTGATCATTCTGGTGGGGCGGGCTGTTCGCTCGCCGACAGCTTGCTGAATGACTGTTGGTGGGCGGTCAATTGCTTTTTCCGGGGCAACTGTTGGCCGAGGGTCAGT                     >  NB501016:282:H2V7GAFX2:1:21306:25857:14830/1‑151 (MQ=60)
                                                                                                                                    TGCCTTGCAGTGAATTCCTTTTAAATCAATGGGTTGTGATCATTCTGGTGGGGCGGGCTGTTCGCTCGCCGACAGCTTGCTGAATGACTGTTGGTGGGCGGTCAATTGCGTTTTCCGGGGCAACTGTTGGCCGAGGGTCAGTGGTTCAAC             >  NB501016:282:H2V7GAFX2:1:11106:3062:8089/1‑150 (MQ=60)
                                                                                                                                      CCTTGCAGTAAATTCCTTTTAAATCAATGGGTTGTGATCATTCTGGTGGGGCGGGCTGTTCGCTCGCCGACAGCTTGCTGAATGACTGTTGGTGGGCGGTCAATTGCGTTTTCCGGGGCAACTGTTGGCCGAGGGTCAGTGGTTCAACAGC          >  NB501016:282:H2V7GAFX2:3:11511:17720:10935/1‑151 (MQ=60)
                                                                                                                                      CCTTGCAGTAAATTCCTTTTAAATCAATGGGTTGTGATCATTCTGGTGGGGCGGGCTGTTCGCTCGCCGACAGCTTGCTGAATGACTGTTGGTGGGCGGTCAATTGCGTTTTCCGGGGCAACTGTTGGCCGAGGGTCAGTGGTTCAACAGC          >  NB501016:282:H2V7GAFX2:2:21206:3590:17080/1‑151 (MQ=60)
                                                                                                                                          GCAGTGAATTCCTTTTAAATCAATGGGTTGTGATCATTCTGGTGGGGCGGGCTGTTCGCTCGCCGACAGCTTGCTGAATGACTGTTGGTGGGCGGTCAATTGCGTTTTCCGGGGCAACTGTTGGCCGAGGGTCAGTGGTTCAACAGCTTG       <  NB501016:282:H2V7GAFX2:2:21101:24088:8139/150‑1 (MQ=60)
                                                                                                                                               AAATTCCTTTTAAATCAATGGGTTGTGATCATTCTGGTGGGGCGGGCTGTTCGCTCGCCGACAGCTTGCTGTATGACTGTTGGTGGGCGGTCAATTGCGTTTTCCGGGGCAACTGTTGGCCGAGGGTCAGTGGTTCAACAGCTTGTTGGC  <  NB501016:282:H2V7GAFX2:1:21203:26013:15483/150‑1 (MQ=60)
                                                                                                                                               |                                                                                                                                                     
GATGGGGCGGAAGCGGGCGGCAAGGGATTCGTAGTGGGTACCGGTAGACAGGTGGGGCAGTGGGGCTTGGGCGGTCATCGCAGTTCTCCTCGATTGATGCGATTGCTGACGGTGACGCTCTCGCAAACTTCGTGCCTTGCAGTGAATTCCTTTTAAATCAATGGGTTGTGATCATTCTGGTGGGGCGGGCTGTTCGCTCGCCGACAGCTTGCTGAATGACTGTTGGTGGGCGGTCAATTGCGTTTTCCGGGGCAACTGTTGGCCGAGGGTCAGTGGTTCAACAGCTTGTTGGC  >  NC_002947_CJ‑RC/3147791‑3148083

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 0 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑