«

Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.

ALE, Flask, Isolate	Predicted Mutations	Mean Coverage	Total Reads	Percent Mapped	Mapped Reads	Average Read Length
A3 F53 I1 R1	62	81.2	3465250	98.6%	3416736	145.3

Breseq alignment

BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
MC JC	NC_002947_CJ‑RC	5,400,039	Δ32,910 bp		[hsdS]–[PP_4769]	28 genes [hsdS], PP_5711, PP_4743, PP_4745, PP_4746, PP_4748, PP_4749, PP_4750, PP_4751, PP_4752, stcD, PP_4754, PP_4755, gabP‑V, gudD, PP_4758, PP_4759, PP_4760, PP_4761, tesB, PP_4763, PP_5712, PP_4764, PP_4765, rhlE‑I, yedA, PP_4768, [PP_4769]

Missing coverage evidence...
			seq id	start	end	size	←reads	reads→	gene	description
*	*	÷	NC_002947_CJ‑RC	5400039	5432948	32910	98 [1]	[0] 96	[hsdS]–[PP_4769]	[hsdS],PP_5711,PP_4743,PP_4745,PP_4746,PP_4748,PP_4749,PP_4750,PP_4751,PP_4752,stcD,PP_4754,PP_4755,gabP‑V,gudD,PP_4758,PP_4759,PP_4760,PP_4761,tesB,PP_4763,PP_5712,PP_4764,PP_4765,rhlE‑I,yedA,PP_4768,[PP_4769]

New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947_CJ‑RC	= 5400038	1 (0.010)	95 (1.200)	75/286	0.1	99.5%	coding (235/1731 nt)	hsdS	type I restriction modification system specificity protein
*	?	NC_002947_CJ‑RC	5432949 =	0 (0.000)	95 (1.200)	75/286	0.1	99.5%	coding (185/480 nt)	PP_4769	hypothetical protein

GATK/CNVnator alignment

N/A