Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A5 F25 I1 R1 61 74.4 3161000 98.6% 3116746 146.7

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation annotation gene description
RA NC_002947_CJ‑RC 5,192,123 G→A intergenic (‑155/+19) PP_4570 ← / ← cysK hypothetical protein/cysteine synthase A

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_002947_CJ‑RC5,192,1230GA100.0% 298.3 / NA 85intergenic (‑155/+19)PP_4570/cysKhypothetical protein/cysteine synthase A
Reads supporting (aligned to +/- strand):  ref base G (0/0);  new base A (39/46);  total (39/46)

TTGAGGAAGAGTCACGGCTGCGCTGCCTGCTCTCCAGAAAATCATCCTGCCATCATAAACCGATCCCGCCGCGGTAAAAACAACCCGGGCGGGATCGCATTCATGAAGATTTTGCAATAAACCAGTCCGCCGATCGTTGCGCCGGATCAGCGGCAAGGCCGATTACTGCTGGGTTTCCTGCTCGCTGAACATGTCGCTGAACAGCATGCTCGACAAGTATCGCTCGCCCGAATCGGGCAGGATTACGACGATGGTCTTACCCTGCATTTCCGGTTTTTCGGCCAGACG  >  NC_002947_CJ‑RC/5191980‑5192267
                                                                                                                                               |                                                                                                                                                
ttGAGGAAGAGTCACGGCTGCGCTGCCTGCTCTCCAGAAAATCATCCTGCCATCATAAACCGATCCCGCCGCGGTAAAAACAACCCGGGCGGGATCGCATTCATGAAGATTTTGCAATAAACCAGTCCGCCGATCGTTGCGCCAGAt                                                                                                                                               >  4:124883/1‑147 (MQ=255)
ttGAGGAAGAGTCACGGCTGCGCTGCCTGCTCTCCAGAAAATCATCCTGCCATCATAAACCGATCCCGCCGCGGTAAAAACAACCCGGGCGGGATCGCATTCATGAAGATTTTGCAATAAACCAGTCCGCCGATCGTAGCGCCAGAt                                                                                                                                               >  5:111863/1‑147 (MQ=255)
  gAGGAAGAGTCACGGCTGCGCTGCCTGCTCTCCAGAAAATCATCCTGCCATCATAAACCGATCCCGCCGCGGTAAAAACAACCCGGGCGGGATCGCATTCATGAAGATTTTGCAATAAACCAGTCCGCCGATCGTTGCGCCAGATCAGc                                                                                                                                           >  4:290845/1‑149 (MQ=255)
   aGGAAGAGTCACGGCTGCGCTGCCTGCTCTCCAGAAAATCATCCTGCCATCATAAACCGATCCCGCCGCGGTAAAAACAACCCGGGCGGGATCGCATTCATGAAGATTTTGCAATAAACCAGTCCGCCGATCGTTGCGCCAGATCAGCg                                                                                                                                          <  6:275622/149‑1 (MQ=255)
           tCACGGCTGCGCTGCCTGCTCTCCAGAAAATCATCCTGCCATCATAAACCGATCCCGCCGCGGTAAAAACAACCCGGGCGGGATCGCATTCATGAAGATTTTGCAATAAACCAGTCCGCCGATCGTTGCGCCAGATCAGCGGCAAGGcc                                                                                                                                  <  4:99222/149‑1 (MQ=255)
           tCACGGCTGCGCTGCCTGCTCTCCAGAAAATCATCCTGCCATCATAAACCGATCCCGCCGCGGTAAAAACAACCCGGGCGGGATCGCATTCATGAAGATTTTGCAATAAACCAGTCCGCCGATCGTTGCGCCAGATCAGCGGCAAGGcc                                                                                                                                  >  3:163525/1‑149 (MQ=255)
           tCACGGCTGCGCTGCCTGCTCTCCAGAAAATCATCCTGCCATCATAAACCGATCCCGCCGCGGTAAAAACAACCCGGGCGGGATCGCATTCATGAAGATTTTGCAATAAACCAGTCCGCCGATCGTTGCGCCAGATCAGCGGCAAGGcc                                                                                                                                  >  5:153298/1‑149 (MQ=255)
             aCGGCTGCGCTGCCTGCTCTCCAGAAAATCATCCTGCCATCATAAACCGATCCCGCCGCGGTAAAAACAACCCGGGCGGGATCGCATTCATGAAGATTTTGCAATAAACCAGTCCGCCGATCGTTGCGCCAGATCAGCGGCAAGGCCGa                                                                                                                                >  7:345429/1‑149 (MQ=255)
                    cgctgcCTGCTCTCCAGAAAATCATCCTGCCATCATAAACCGATCCCGCCGCGGTAAAAACAACCCGGGCGGGATCGCATTCATGAAGATTTTGCAATAAACCAGTCCGCCGATCGTTGCGCCAGATCAGCGGCAAGGCCGATTAct                                                                                                                           <  8:198113/147‑1 (MQ=255)
                      ctgcctgcTCTCCAGAAAATCATCCTGCCATCATAAACCGATCCCGCCGCGGTAAAAACAACCCGGGCGGGATCGCATTCATGAAGATTTTGCAATAAACCAGTCCGCCGATCGTTGCGCCAGATCAGCGGCAAGGCCGATTActgctg                                                                                                                       <  8:368351/149‑1 (MQ=255)
                         cctgcTCTCCAGAAAATCATCCTGCCATCATAAACCGATCCCGCCGCGGTAAAAACAACCCGGGCGGGATCGCATTCATGAAGATTTTGCAATAAACCAGTCCGCCGATCGTTGCGCCAGATCAGCGGCAAGGCCGATTACTGCTGGGt                                                                                                                    >  4:11152/1‑149 (MQ=255)
                         cctgcTCTCCAGAAAATCATCCTGCCATCATAAACCGATCCCGCCGCGGTAAAAACAACCCGGGCGGGATCGCATTCATGAAGATTTTGCAATAAACCAGTCCGCCGATCGTTGCGCCAGATCAGCGGCAAGGCCGATTACTGCTGGGt                                                                                                                    >  4:94930/1‑149 (MQ=255)
                          ctgcTCTCCAGAAAATCATCCTGCCATCATAAACCGATCCCGCCGCGGTAAAAACAACCCGGGCGGGATCGCATTCATGAAGATTTTGCAATAAACCAGTCCGCCGATCGTTGCGCCAGATCAGCGGCAAGGCCGATTACTGCTGGGtt                                                                                                                   <  3:177976/149‑1 (MQ=255)
                             ctctCCAGAAAATCATCCTGCCATCATAAACCGATCCCGCCGCGTTAAAAACAACCCGGGCGGGATCGCATTCATGAAGATTTTGCAATAAACCAGTCCGCCGATCGTTGCGCCAGATCAGCGGCAAGGCCGATTACTGCTGGGTTTcc                                                                                                                <  6:57876/149‑1 (MQ=255)
                             ctctCCAGAAAATCATCCTGCCATCATAAACCGATCCCGCCGCGGTAAAAACAACCCGGGCGGGATCGCATTCATGAAGATTTTGCAATAAACCAGTCCGCCGATCGTTGCGCCAGATCAGCGGCAAGGCCGATTACTGCTGGGTTTc                                                                                                                 <  3:11152/148‑1 (MQ=255)
                             ctctCCAGAAAATCATCCTGCCATCATAAACCGATCCCGCCGCGGTAAAAACAACCCGGGCGGGATCGCATTCATGAAGATTTTGCAATAAACCAGTCCGCCGATCGTTGCGCCAGATCAGCGGCAAGGCCGATTACTGCTGGGTTTc                                                                                                                 <  6:367225/148‑1 (MQ=255)
                             ctctCCAGAAAATCATCCTGCCATCATAAACCGATCCCGCCGCGGTAAAAACAACCCGGGCGGGATCGCATTCATGAAGATTTTGCAATAAACCAGTCCGCCGATCGTTGCGCCAGATCAGCGGCAAGGCCGATTACTGCTGGGTTTc                                                                                                                 <  6:97991/148‑1 (MQ=255)
                             ctctCCAGAAAATCATCCTGCCATCATAAACCGATCCCGCCGCGGTAAAAACAACCCGGGCGGGATCGCATTCATGAAGATTTTGCAATAAACCAGTCCGCCGATCGTTGCGCCAGATCAGCGGCAAGGCCGATTACTGCTGGGTTTc                                                                                                                 <  4:69725/148‑1 (MQ=255)
                             ctctCCAGAAAATCATCCTGCCATCATAAACCGATCCCGCCGCGGTAAAAACAACCCGGGCGGGATCGCATTCATGAAGATTTTGCAATAAACCAGTCCGCCGATCGTTGCGCCAGATCAGCGGCAAGGCCGATTACTGCTGGGTTTc                                                                                                                 <  8:341673/148‑1 (MQ=255)
                                tcCAGAAAATCATCCTGCCATCATAAACCGATCCCGCCGCGGTAAAAACAACCCGGGCGGGATCGCATTCATGAAGATTTTGCAATAAACCAGTCCGCCGATCGTTGCGCCAGATCAGCGGCAAGGCCGATTACTGCTGGGTTTCCt                                                                                                               <  6:191432/147‑1 (MQ=255)
                                tcCAGAAAATCATCCTGCCATCATAAACCGATCCCGCCGCGGTAAAAACAACCCGGGCGGGATCGCATTCATGAAGATTTTGCAATAAACCAGTCCGCCGATCGTTGCGCCAGATCAGCGGCAAGGCCGATTACTGCTGGGTTTCCTGc                                                                                                             >  5:361044/1‑149 (MQ=255)
                                  cAGAAAATCATCCTGCCATCATAAACCGATCCCGCCGCGGTAAAAACAACCCGGGCGGGATCGCATTCATGAAGATTTTGCAATAAACCAGTCCGCCGATCGTTGCGCCAGATCAGCGGCAAGGCCGATTACTGCTGGGTTTCCTGCt                                                                                                            <  4:163525/148‑1 (MQ=255)
                                  cAGAAAATCATCCTGCCATCATAAACCGATCCCGCCGCGGTAAAAACAACCCGGGCGGGATCGCATTCATGAAGATTTTGCAATAAACCAGTCCGCCGATCGTTGCGCCAGATCAGCGGCAAGGCCGATTACTGCTGGGTTTCCTGCTc                                                                                                           <  5:48099/149‑1 (MQ=255)
                                  cAGAAAATCATCCTGCCATCATAAACCGATCCCGCCGCGGTAAAAACAACCCGGGCGGGATCGCATTCATGAAGATTTTGCAATAAACCAGTCCGCCGATCGTTGCGCCAGATCAGCGGCAAGGCCGATTACTGCTGGGTTTCCTGCTc                                                                                                           <  7:294156/149‑1 (MQ=255)
                                  cAGAAAATCATCCTGCCATCATAAACCGATCCCGCCGCGGTAAAAACAACCCGGGCGGGATCGCATTCATGAAGATTTTGCAATAAACCAGTCCGCCGATCGTTGCGCCAGATCAGCGGCAAGGCCGATTACTGCTGGGTTTCCTGCTc                                                                                                           >  8:89055/1‑149 (MQ=255)
                                              cTGCCATCATAAACCGATCCCGCCGCGGTAAAAACAACCCGGGCGGGATCGCATTCATGAAGATTTTGCAATAAACCAGTCCGCCGATCGTTGCGCCAGATCAGCGGCAAGGCCGATTACTGCTGGGTTTCCTGCTCGCTGAACATGTc                                                                                               >  5:380238/1‑149 (MQ=255)
                                              cTGCCATCATAAACCGATCCCGCCGCGGTAAAAACAACCCGGGCGGGATCGCATTCATGAAGATTTTGCAATAAACCAGTCCGCCGATCGTTGCGCCAGATCAGCGGCAAGGCCGATTACTGCTGGGTTTCCTGCTCGCTGAACATGTc                                                                                               >  8:146962/1‑149 (MQ=255)
                                                 ccATCATAAACCGATCCCGCCGCGGTAAAAACAACCCGGGCGGGATCGCATTCATGAAGATTTTGCAATAAACCAGTCCGCCGATCGTTGCGCCAGATCAGCGGCAAGGCCGATTACTGCTGGGTTTCCTGCTCGCTGAACATGTCGCt                                                                                            <  6:153298/149‑1 (MQ=255)
                                                  catcatAAACCGATCCCGCCGCGGTAAAAACAACCCGGGCGGGATCGCATTCATGAAGATTTTGCAATAAACCAGTCCGCCGATCGTTGCGCCAGATCAGCGGCAAGGCCGATTACTGCTGGGTTTCCTGCTCGCTGAACATGTCGCTg                                                                                           <  4:166060/149‑1 (MQ=255)
                                                   atcatAAACCGATCCCGCCGCGGTAAAAACAACCCGGGCGGGATCGCATTCATGAAGATTTTGCAATAAACCAGTCCGCCGATCGTTGCGCCAGATCAGCGGCAAGGCCGATTACTGCTGGGTTTCCTGCTCGCTGAACATGTCGCTg                                                                                           >  6:91130/1‑148 (MQ=255)
                                                      atAAACCGATCCCGCCGCGGTAAAAACAACCCGGGCGGGATCGCATTCATGAAGATTTTGCAATAAACCAGTCCGCCGATCGTTGCGCCAGATCAGCGGCAAGGCCGATTACTGCTGGGTTTCCTGCTCGCTGAACATGTCGCTGaa                                                                                         >  6:387110/1‑147 (MQ=255)
                                                       tAAACCGATCCCGCCGCGGTAAAAACAACCCGGGCGGGATCGCATTCATGAAGATTTTGCAATAAACCAGTCCGCCGATCGTTGCGCCAGATCAGCGGCAAGGCCGATTACTGCTGGGTTTCCTGCTCGCTGAACATGTCGCTGAACAg                                                                                      >  4:111666/1‑149 (MQ=255)
                                                         aaCCGATCCCGCCGCGGTAAAAACAACCCGGGCGGGATCGCATTCATGAAGATTTTGCAATAAACCAGTCCGCCGATCGTTGCGCCAGATCAGCGGCAAGGCCGATTACTGCTGGGTTTCCTGCTCGCTGAACATGTCGCTGAACAGc                                                                                     <  8:254872/148‑1 (MQ=255)
                                                         aaCCGATCCCGCCGCGGTAAAAACAACCCGGGCGGGATCGCATTCATGAAGATTTTGCAATAAACCAGTCCGCCGATCGTTGCGCCAGATCAGCGGCAAGGCCGATTACTGCTGGGTTTCCTGCTCGCTGAACATGTCGCTGAACAGCa                                                                                    >  5:164494/1‑149 (MQ=255)
                                                         aaCCGATCCCGCCGAGGTAAAAACAACCCGGGCGGGATCGCATTCATGAAGATTTTGCAATAAACCAGTCCGCCGATCGTTGCGCCAGATCAGCGGCAAGGCCGATTACTGCTGTGTTTCCTGCTCGCTGAACATGTCGCTGAACAGc                                                                                     <  7:171882/148‑1 (MQ=255)
                                                          aCCGATCCCGCCGCGGTAAAAACAACCCGGGCGGGATCGCATTCATGAAGATTTTGCAATAAACCAGTCCGCCGATCGTTGCGCCAGATCAGCGGCAAGGCCGATTACTGCTGGGTTTCCTGCTCGCTGAACATGTCGCTGAACa                                                                                       <  8:136536/145‑1 (MQ=255)
                                                          aCCGATCCCGCCGCGGTAAAAACAACCCGGGCGGGATCGCATTCATGAAGATTTTGCAATAAACCAGTCCGCCGATCGTTGCGCCAGATCAGCGGCAAGGCCGATTACTGCTGGGTTTCCTGCTCGCTGAACATGTCGCTGAACa                                                                                       >  7:136536/1‑145 (MQ=255)
                                                               tCCCGCCGC‑GTAAAAACAACCCGGGCGGGATCGCATTCATGAAGATTTTGCAATAAACCAGTCCGCCGATCGTTGCGCCAGATCAGCGGCAAGGCCGATTACTGCTGGGTTTCCTGCTCGCTGAACATGTCGCTGAACAGCATGCTCGa                                                                             >  1:318919/1‑149 (MQ=255)
                                                                  cgccgcGGTAAAAACAACCCGGGCGGGATCGCATTCATGAAGATTTTGCAATAAACCAGTCCGCCGATCGTTGCGCCAGATCAGCGGCAAGGCCGATTACTGCTGGGTTTCCTGCTCGCTGAACATGTCGCTGAACAGCATGCTc                                                                               <  7:104539/145‑1 (MQ=255)
                                                                  cgccgcGGTAAAAACAACCCGGGCGGGATCGCATTCATGAAGATTTTGCAATAAACCAGTCCGCCGATCGTTGCGCCAGATCAGCGGCAAGGCCGATTACTGCTGGGTTTCCTGCTCGCTGAACATGTCGCTGAACAGCATGCTc                                                                               >  8:104539/1‑145 (MQ=255)
                                                                   gccgcGGTAAAAACAACCCGGGCGGGATCGCATTCATGAAGATTTTGCAATAAACCAGTCCGCCGATCGTTGCGCCAGATCAGCGGCAAGGCCGATTACTGCTGGGTTTCCTGCTCGCTGAACATGTCGCTGAACAGCATGCTCGAc                                                                            >  1:315666/1‑147 (MQ=255)
                                                                   gccgcGGTAAAAACAACCCGGGCGGGATCGCATTCATGAAGATTTTGCAATAAACCAGTCCGCCGATCGTTGCGCCAGATCAGCGGCAAGGCCGATTACTGCTGGGTTTCCTGCTCGCTGAACATGTCGCTGAACAGCATGCTCGACaa                                                                          <  6:16959/149‑1 (MQ=255)
                                                                          tAAAAACAACCCGGGCGGGATCGCATTCATGAAGATTTTGCAATAAACCAGTCCGCCGATCGTTGCGCCAGATCAGCGGCAAGGCCGATTACTGCTGGGTTTCCTGCTCGCTGAACATGTCGCTGAACAGCATGCTCGACAAGTAtcgc                                                                   >  5:312085/1‑149 (MQ=255)
                                                                          tAAAAACAACCCGGGCGGGATCGCATTCATGAAGATTTTGCAATAAACCAGTCCGCCGATCGTTGCGCCAGATCAGCGGCAAGGCCGATTACTGCTGGGTTTCCTGCTCGCTGAACATGTCGCTGAACAGCATGCTCGACAAGTAtcgc                                                                   <  4:147925/149‑1 (MQ=255)
                                                                              aacaacCCGGGCGGGATCGCATTCATGAAGATTTTGCAATAAACCAGTCCGCCGATCGTTGCGCCAGATCAGCGGCAAGGCCGATTACTGCTGGGTTTCCTGCTCGCTGAACATGTCGCTGAACAGCATGCTCGACAAGTAtcgctcgc                                                               >  8:66939/1‑149 (MQ=255)
                                                                               acaacCCGGGCGGGATCGCATTCATGAAGATTTTGCAATAAACCAGTCCGCCGATCGTTGCGCCAGATCAGCGGCAAGGCCGATTACTGCTGGGTTTCCTGCTCGCTGAACATGTCGCTGAACAGCATGCTCGACAAGTATCGCTCGcc                                                              <  6:53674/149‑1 (MQ=255)
                                                                                    ccGGGCGGGATCGCATTCATGAAGATTTTGCAATAAACCAGTCCGCCGATCGTTGCGCCAGATCAGCGGCAAGGCCGATTACTGCTGGGTTTCCTGCTCGCTGa                                                                                                      >  7:265383/1‑104 (MQ=255)
                                                                                    ccGGGCGGGATCGCATTCATGAAGATTTTGCAATAAACCAGTCCGCCGATCGTTGCGCCAGATCAGCGGCAAGGCCGATTACTGCTGGGTTTCCTGCTCGCTGa                                                                                                      <  8:265383/104‑1 (MQ=255)
                                                                                     cgggctggATCGCATTCATGAAGATTTTGCAATAAACCAGTGCGCCGATCGTTGCGCCAGATCAGCGGCAAGGCCGATTACTGCTGGGTTTCCTGCTCGCTGAACATGTCGCTGATCAGCATGCTCGACAAGTATCGCTCGCCCGAATc                                                        <  4:343128/149‑1 (MQ=255)
                                                                                         cgggATCGCATTCATGAAGATTTTGCAATAAACCAGTCCGCCGATCGTTGCGCCAGATCAGCGGCAAGGCCGATTACTGCTGGGTTTCCTGCTCGCTGAACATGTCGCTGAACAGCATGCTCGACAAGTATCGCTCGCCCGAATCGGGc                                                    <  3:286076/149‑1 (MQ=255)
                                                                                          gggATCGCATTCATGAAGATTTTGCAATAAACCAGTCCGCCGATCGTTGCGCCAGATCAGCGGCAAGGCCGATTACTGCTGGGTTTCCTGCTCGCTGAACATGTCGCTGAACAGCATGCTCGACAAGTATCGCTCGCCCGAATCGGGCa                                                   <  3:227821/149‑1 (MQ=255)
                                                                                            gATCGCATTCATGAAGATTTTGCAATAAACCAGTCCGCCGATCGTTGCGCCAGATCAGCGGCAAGGCCGATTACTGCTGGGTTTCCTGCTCGCTGAACATGTCGCTGAACAGCATGCTCGACAAGTATCGCTCGCCCGAATCGGGCAg                                                  >  2:26544/1‑148 (MQ=255)
                                                                                             aTCGCATTCATGAAGATTTTGCAATAAACCAGTCCGCCGATCGTTGCGCCAGATCAGCGGCAAGGCCGATTACTGCTGGGTTTCCTGCTCGCTGAACATGTCGCTGAACAGCATGCTCGACAAGTATCGCTCGCCCGAATCGGGCAGGa                                                >  5:382104/1‑149 (MQ=255)
                                                                                              tCGCATTCATGAAGATTTTGCAATAAACCAGTCCGCCGATCGTTGCGCCAGATCAGCGGCAAGGCCGATTACTGCTGGGTTTCCTGCTCGCTGAACATGTCGCTGAACAGCATGCTCGACAAGTATCGCTCGCCCGAATCGGGCAGGa                                                <  3:369845/148‑1 (MQ=255)
                                                                                                gCATTCATGAAGATTTTGCAATAAACCAGTCCGCCGATCGTTGCGCCAGATCAGCGGCAAGGCCGATTACTGCTGGGTTTCCTGCTCGCTGAACATGTCGCTGAACAGCATGCTCGACAAGTATCGCTCGCCCGAATCGGGCAGGAtt                                              <  6:97599/148‑1 (MQ=255)
                                                                                                gCATTCATGAAGATTTTGCAATAAACCAGTCCGCCGATCGTTGCGCCAGATCAGCGGCAAGGCCGATTACTGCTGGGTTTCCTGCTCGCTGAACATGTCGCTGAACAGCATGCTCGACAAGTATCGCTCGCCCGAATCGGGCAGGATTa                                             <  2:315666/149‑1 (MQ=255)
                                                                                                   ttCATGAAGATTTTGCAATAAACCAGTCCGCCGATCGTTGCGCCAGATCAGCGGCAAGGCCGATTACTGCTGGGTTTCCTGCTCGCTGAACATGTCGCTGAACAGCATGCTCGACAAGTATCGCTCGCCCGAATCGGGCAGGATTacga                                          <  4:109689/149‑1 (MQ=255)
                                                                                                     cATGAAGATTTTGCAATAAACCAGTCCGCCGATCGTTGCGCCAGATCAGCGGCAAGGCCGATTACTGCTGGGTTTCCTGCTCGCTGAACATGTCGCTGAACAGCATGCTCGACAAGTATCGCTCGCCCGAATCGGGCAGGATTacgac                                         <  2:139920/148‑1 (MQ=255)
                                                                                                      aTGAAGATTTTGCAATAAACCAGTCCGCCGATCGTTGCGCCAGATCAGCGGCAAGGCCGATTACTGCTGGGTTTCCTGCTCGCTGAACATGTCGCTGAACAGCATGCTCGACAAGTATCGCTCGCCCGAATCGGGCAGGATTAcgacga                                       >  5:255963/1‑149 (MQ=255)
                                                                                                        gAAGATTTTGCAATAAACCAGTCCGCCGATCGTTGCGCCAGATCAGCGGCAAGGCCGATTACTGCTGGGTTTCCTGCTCGCTGAACATGTCGCTGAACAGCATGCTCGACAAGTATCGCTCGCCCGAATCGGGCAGGATTACGACGATg                                     >  8:117412/1‑149 (MQ=255)
                                                                                                        gAAGATTTTGCAATAAACCAGTCCGCCGATCGTTGCGCCAGATCAGCGGCAAGGCCGATTACTGCTGGGTTTCCTGCTCGCTGAACATGTCGCTGAACAGCATGCTCGACAAGTATCGCTCGCCCGAATCGGGCAGGATTACGACGATg                                     >  7:193055/1‑149 (MQ=255)
                                                                                                        gAAGATTTTGCAATAAACCAGTCCGCCGATCGTTGCGCCAGATCAGCGGCAAGGCCGATTACTGCTGGGTTTCCTGCTCGCTGAACATGTCGCTGAACAGCATGCTCGACAAGTATCGCTCGCCCGAATCGGGCAGGATTACGACGATg                                     >  4:66992/1‑149 (MQ=255)
                                                                                                         aaGATTTTGCAATAAACCAGTCCGCCGATCGTTGCGCCAGATCAGCGGCAAGGCCGATTACTGCTGGGTTTCCTGCTCGCTGAACATGTCGCTGAACAGCATGCTCGACAAGTATCGCTCGCCCGAATCGGGCAGGATTACGACGATgg                                    >  7:109614/1‑149 (MQ=255)
                                                                                                          aGATTTTGCAATAAACCAGTCCGCCGATCGTTGCGCCAGATCAGCGGCAAGGCCGATTACTGCTGGGTTTCCTGCTCGCTGAACATGTCGCTGAACAGCATGCTCGACAAGTATCGCTCGCCCGAATCGGGCAGGATTACGACGATGGt                                   <  6:164494/149‑1 (MQ=255)
                                                                                                             ttttGCAATAAACCAGTCCGCCGATCGTTGCGCCAGATCAGCGGCAAGGCCGATTACTGCTGGGTTTCCTGCTCGCTGAACATGTCGCTGAACAGCATGCTCGACAAGTATCGCTCGCCCGAATCGGGCAGGATTACGACGATGGTCt                                 >  7:11556/1‑148 (MQ=255)
                                                                                                               ttGCAATAAACCAGTCCGCCGATCGTTGCGCCAGATCAGCGGCAAGGCCGATTACTGCTGGGTTTCCTGCTCGCTGAACATGTCGCTGAACAGCATGCTCGACAAGTATCGCTCGCCCGAATCGGGCAGGATTACGACGATGGTCTTa                               <  3:94930/148‑1 (MQ=255)
                                                                                                                   aaTAAACCAGTCCGCCGATCGTTGCGCCAGATCAGCGGCAAGGCCGATTACTGCTGGGTTTCCTGCTCGCTGAACATGTCGCTGAACAGCATGCTCGAc                                                                            <  5:223779/99‑1 (MQ=255)
                                                                                                                   aaTAAACCAGTCCGCCGATCGTTGCGCCAGATCAGCGGCAAGGCCGATTACTGCTGGGTTTCCTGCTCGCTGAACATGTCGCTGAACAGCATGCTCGAc                                                                            >  6:223779/1‑99 (MQ=255)
                                                                                                                   aaTAAACCAGTCCGCCGATCGTTGCGCCAGATCAGCGGCAAGGCCGATTACTGCTGGGTTTCCTGCTCGCTGAACATGTCGCTGAACAGCATGCTCGACAAGTATCGCTCGCCCGAATCGGGCAGGATTACGACGATGGTCTTACCCTg                          >  2:152800/1‑149 (MQ=255)
                                                                                                                   aaTAAACCAGTCCGCCGATCGTTGCGCCAGATCAGCGGCAAGGCCGATTACTGCTGGGTTTCCTGCTCGCTGAACATGTCGCTGAACAGCATGCTCGACAAGTATCGCTCGCCCGAATCGGGCAGGATTACGACGATGGTCTTACCCTg                          >  7:89051/1‑149 (MQ=255)
                                                                                                                    aTAAACCAGTCCGCCGATCGTTGCGCCAGATCAGCGGCAAGGCCGATTACTGCTGGGTTTCCTGCTCGCTGAACATGTCGCTGAACAGCATGCTCGACAAGTATCGCTCGCCCGAATCGGGCAGGATTACGACGATGGTCTTACCCTg                          >  7:356912/1‑148 (MQ=255)
                                                                                                                    aTAAACCAGTCCGCCGATCGTTGCGCCAGATCAGCGGCAAGGCCGATTACTGCTGGGTTTCCTGCTCGCTGAACATGTCGCTGAACAGCATGCTCGACAAGTATCGCTCGCCCGAATCGGGCAGGATTACGACGATGGTCTTACCCTGc                         <  6:64599/149‑1 (MQ=255)
                                                                                                                           aGTCCGCCGATCGTTGCGCCAGATCAGCGGCAAGGCCGATTACTGCTGGGTTTCCTGCTCGCTGAACATGTCGCTGAACAGCATGCTCGACAAGTATCGCTCGCCCGAATCGGGCAGGATTACGACGATGGTCTTACCCTGCATTTCCg                  <  1:26544/149‑1 (MQ=255)
                                                                                                                           aGTCCGCCGATCGTTGCGCCAGATCAGCGGCAAGGCCGATTACTGCTGGGTTTCCTGCTCGCTGAACATGTCGCTGAACAGCATGCTCGACAAGTATCGCTCGCCCGAATCGGGCAGGATTACGACGATGGTCTTACCCTGCATTTCCg                  <  7:42372/149‑1 (MQ=255)
                                                                                                                            gTCCGCCGATCGTTGCGCCAGATCAGCGGCAAGGCCGATTACTGCTGGGTTTCCTGCTCGCTGAACATGTCGCTGAACAGCATGCTCGACAAGTATCGCTCGCCCGAATCGGGCAGGATTACGACGATGGTCTTACCCTGCATTTCCgg                 <  7:300961/149‑1 (MQ=255)
                                                                                                                            gTCCGCCGATCGTTGCGCCAGATCAGCGGCAAGGCCGATTACTGCTGGGTTTCCTGCTCGCTGAACATGTCGCTGAACAGCATGCTCGACAAGTATCGCTCGCCCGAATCGGGCAGGATTACGACGATGGTCTTACCCTGCATTTCCgg                 >  6:374245/1‑149 (MQ=255)
                                                                                                                               cgccgATCGTTGCGCCAGATCAGCGGCAAGGCCGATTACTGCTGGGTTTCCTGCTCGCTGAACATGTCGCTGAACAGCATGCTCGACAAGTATCGCTCGCCCGAATCGGGCAGGATTACGACGATGGTCTTACCCTGCATTTCCGGttt              <  1:351950/149‑1 (MQ=255)
                                                                                                                               cgccgATCGTTGCGCCAGATCAGCGGCAAGGCCGATTACTGCTGGGTTTCCTGCTCGCTGAACATGTCGCTGAACAGCATGCTCGACAAGTATCGCTCGCCCGAATCGGGCAGGATTACGACGATGGTCTTACCCTGCATTTCCGGttt              >  7:20420/1‑149 (MQ=255)
                                                                                                                               cgccgATCGTTGCGCCAGATCAGCGGCAAGGCCGATTACTGCTGGGTTTCCTGCTCGCTGAACATGTCGCTGAACAGCATGCTCGACAAGTATCGCTCGCCCGAATCGGGCAGGATTACGACGATGGTCTTACCCTGCATTTCCGGtt               <  2:18664/148‑1 (MQ=255)
                                                                                                                                gccgATCGTTGCGCCAGATCAGCGGCAAGGCCGATTACTGCTGGGTTTCCTGCTCGCTGAACATGTCGCTGAACAGCATGCTCGACAAGTATCGCTCGCCCGAATCGGGCAGGATTACGACGATGGTCTTACCCTGCATTTCCGGtttt             >  3:189882/1‑149 (MQ=255)
                                                                                                                                  cgATCGTTGCGCCAGATCAGCGGCAAGGCCGATTACTGCTGGGTTTCCTGCTCGCTGAACATGTCGCTGAACAGCATGCTCGACAAGTATCGCTCGCCCGAATCGGGCAGGATTACGACGATGGTCTTACCCTGCATTTCCGGTTTTTc           <  4:189882/149‑1 (MQ=255)
                                                                                                                                    aTCGTAGCGCCAGATCAGCGGCAAGGCCGATTACTGCTGGGTTTCCTGCTCGCTGAACATGTCGCTGAACAGCATGCTCGACAAGTATCGCTCGCCCGAATCGGGCAGGATTACGACGATGGTCTTACCCTGCATTTCCGGTTTTTCgg         <  6:111863/149‑1 (MQ=255)
                                                                                                                                     tCGTTGCGCCAGATCAGCGGCAAGGCCGATTACTGCTGGGTTTCCTGCTCGCTGAACATGTCGCTGAACAGCATGCTCGACAAGTATCGCTCGCCCGAATCGGGCAGGATTACGACGATGGTCTTACCCTGCATTTCCGGTTTTTCGGc        <  3:124883/149‑1 (MQ=255)
                                                                                                                                       gTTGCGCCAGATCAGCGGCAAGGCCGATTACTGCTGGGTTTCCTGCTCGCTGAACATGTCGCTGAACAGCATGCTCGACAAGTATCGCTCGCCCGAATCGGGCAGGATTACGACGATGGTCTTACCCTGCATTTCCGGTTTTTCGGcc       <  7:66939/148‑1 (MQ=255)
                                                                                                                                            gcCAGATCAGCGGCAAGGCCGATTACTGCTGGGTTTCCTGCTCGCTGAACATGTCGCTGAACAGCATGCTCGACAAGTATCGCTCGCCCGAATCGGGCAGGATTACGACGATGGTCTTACCCTGCATTTCCGGTTTTTCGGCCAGACg  >  8:99777/1‑148 (MQ=255)
                                                                                                                                               |                                                                                                                                                
TTGAGGAAGAGTCACGGCTGCGCTGCCTGCTCTCCAGAAAATCATCCTGCCATCATAAACCGATCCCGCCGCGGTAAAAACAACCCGGGCGGGATCGCATTCATGAAGATTTTGCAATAAACCAGTCCGCCGATCGTTGCGCCGGATCAGCGGCAAGGCCGATTACTGCTGGGTTTCCTGCTCGCTGAACATGTCGCTGAACAGCATGCTCGACAAGTATCGCTCGCCCGAATCGGGCAGGATTACGACGATGGTCTTACCCTGCATTTCCGGTTTTTCGGCCAGACG  >  NC_002947_CJ‑RC/5191980‑5192267

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑

GATK/CNVnator alignment

BRESEQ :: bam2aln output
CTTGAGGAAGAGTCACGGCTGCGCTGCCTGCTCTCCAGAAAATCATCCTGCCATCATAAACCGATCCCGCCGCGGTAAAAACAACCCGGGCGGGATCGCATTCATGAAGATTTTGCAATAAACCAGTCCGCCGATCGTTGCGCCGGATCAGCGGCAAGGCCGATTACTGCTGGGTTTCCTGCTCGCTGAACATGTCGCTGAACAGCATGCTCGACAAGTATCGCTCGCCCGAATCGGGCAGGATTACGACGATGGTCTTACCCTGCATTTCCGGTTTTTCGGCCA  >  NC_002947_CJ‑RC/5191979‑5192263
                                                                                                                                                |                                                                                                                                            
CTTGAGGAAGAGTCACGGCTGCGCTGCCTGCTCTCCAGAAAATCATCCTGCCATCATAAACCGATCCCGCCGCGGTAAAAACAACCCGGGCGGGATCGCATTCATGAAGATTTTGCAATAAACCAGTCCGCCGATCGTAGCGCCAGATC                                                                                                                                          >  NB501016:282:H2V7GAFX2:3:11509:3269:5012/1‑149 (MQ=60)
           GTCACGGCTGCGCTGCCTGCTCTCCAGAAAATCATCCTGCCATCATAAACCGATCCCGCCGCGGTAAAAACAACCCGGGCGGGATCGCATTCATGAAGATTTTGCAATAAACCAGTCCGCCGATCGTTGCGCCAGATCAGCGGCAAGGCCG                                                                                                                             >  NB501016:282:H2V7GAFX2:3:11604:26679:9121/1‑151 (MQ=60)
           GTCACGGCTGCGCTGCCTGCTCTCCAGAAAATCATCCTGCCATCATAAACCGATCCCGCCGCGGTAAAAACAACCCGGGCGGGATCGCATTCATGAAGATTTTGCAATAAACCAGTCCGCCGATCGTTGCGCCAGATCAGCGGCAAGGCCG                                                                                                                             >  NB501016:282:H2V7GAFX2:2:11306:10049:18307/1‑151 (MQ=60)
             CACGGCTGCGCTGCCTGCTCTCCAGAAAATCATCCTGCCATCATAAACCGATCCCGCCGCGGTAAAAACAACCCGGGCGGGATCGCATTCATGAAGATTTTGCAATAAACCAGTCCGCCGATCGTTGCGCCAGATCAGCGGCAAGGCCGAT                                                                                                                           >  NB501016:282:H2V7GAFX2:4:21601:12486:8861/1‑151 (MQ=60)
                          CCTGCTCTCCAGAAAATCATCCTGCCATCATAAACCGATCCCGCCGCGGTAAAAACAACCCGGGCGGGATCGCATTCATGAAGATTTTGCAATAAACCAGTCCGCCGATCGTTGCGCCAGATCAGCGGCAAGGCCGATTACTGCTGGGTTT                                                                                                              <  NB501016:282:H2V7GAFX2:2:11309:18301:8417/151‑1 (MQ=60)
                             GCTCTCCAGAAAATCATCCTGCCATCATAAACCGATCCCGCCGCGGTAAAAACAACCCGGGCGGGATCGCATTCATGAAGATTTTGCAATAAACCAGTCCGCCGATCGTTGCGCCAGATCAGCGGCAAGGCCGATTACTGCTGGGTTTCC                                                                                                            <  NB501016:282:H2V7GAFX2:2:11103:10268:3764/150‑1 (MQ=60)
                                CTCCAGAAAATCATCCTGCCATCATAAACCGATCCCGCCGCGGTAAAAACAACCCGGGCGGGATCGCATTCATGAAGATTTTGCAATAAACCAGTCCGCCGATCGTTGCGCCAGATCAGCGGCAAGGCCGATTACTGCTGGGTTTCCTGCT                                                                                                        >  NB501016:282:H2V7GAFX2:3:21606:7647:1870/1‑151 (MQ=60)
                                  CCAGAAAATCATCCTGCCATCATAAACCGATCCCGCCGCGGTAAAAACAACCCGGGCGGGATCGCATTCATGAAGATTTTGCAATAAACCAGTCCGCCGATCGTTGCGCCAGATCAGCGGCAAGGCCGATTACTGCTGGGTTTCCTGCTCG                                                                                                      <  NB501016:282:H2V7GAFX2:4:21504:25941:8773/151‑1 (MQ=60)
                                  CCAGAAAATCATCCTGCCATCATAAACCGATCCCGCCGCGGTAAAAACAACCCGGGCGGGATCGCATTCATGAAGATTTTGCAATAAACCAGTCCGCCGATCGTTGCGCCAGATCAGCGGCAAGGCCGATTACTGCTGGGTTTCCTGCTCG                                                                                                      <  NB501016:282:H2V7GAFX2:3:11409:5456:15985/151‑1 (MQ=60)
                                              CCTGCCATCATAAACCGATCCCGCCGCGGTAAAAACAACCCGGGCGGGATCGCATTCATGAAGATTTTGCAATAAACCAGTCCGCCGATCGTTGCGCCAGATCAGCGGCAAGGCCGATTACTGCTGGGTTTCCTGCTCGCTGAACATGTCG                                                                                          >  NB501016:282:H2V7GAFX2:3:21609:16235:9780/1‑151 (MQ=60)
                                                         AAACCGATCCCGCCGCGGTAAAAACAACCCGGGCGGGATCGCATTCATGAAGATTTTGCAATAAACCAGTCCGCCGATCGTTGCGCCAGATCAGCGGCAAGGCCGATTACTGCTGGGTTTCCTGCTCGCTGAACATGTCGCTGAACAGCAT                                                                               >  NB501016:282:H2V7GAFX2:3:11606:9587:7673/1‑151 (MQ=60)
                                                         AAACCGATCCCGCCGAGGTAAAAACAACCCGGGCGGGATCGCATTCATGAAGATTTTGCAATAAACCAGTCCGCCGATCGTTGCGCCAGATCAGCGGCAAGGCCGATTACTGCTGTGTTTCCTGCTCGCTGAACATGTCGCTGAACAGCA                                                                                <  NB501016:282:H2V7GAFX2:4:11607:11742:5649/150‑1 (MQ=60)
                                                          AACCGATCCCGCCGCGGTAAAAACAACCCGGGCGGGATCGCATTCATGAAGATTTTGCAATAAACCAGTCCGCCGATCGTTGCGCCAGATCAGCGGCAAGGCCGATTACTGCTGGGTTTCCTGCTCGCTGAACATGTCGCTGAACAG                                                                                  >  NB501016:282:H2V7GAFX2:4:11512:13131:14585/1‑147 (MQ=60)
                                                               ATCCCGCCGC‑GTAAAAACAACCCGGGCGGGATCGCATTCATGAAGATTTTGCAATAAACCAGTCCGCCGATCGTTGCGCCAGATCAGCGGCAAGGCCGATTACTGCTGGGTTTCCTGCTCGCTGAACATGTCGCTGAACAGCATGCTCGAC                                                                        >  NB501016:282:H2V7GAFX2:1:21210:13751:3951/1‑151 (MQ=60)
                                                                  CCGCCGCGGTAAAAACAACCCGGGCGGGATCGCATTCATGAAGATTTTGCAATAAACCAGTCCGCCGATCGTTGCGCCAGATCAGCGGCAAGGCCGATTACTGCTGGGTTTCCTGCTCGCTGAACATGTCGCTGAACAGCATGCTCG                                                                          <  NB501016:282:H2V7GAFX2:4:11507:4140:1339/147‑1 (MQ=60)
                                                                   CGCCGCGGTAAAAACAACCCGGGCGGGATCGCATTCATGAAGATTTTGCAATAAACCAGTCCGCCGATCGTTGCGCCAGATCAGCGGCAAGGCCGATTACTGCTGGGTTTCCTGCTCGCTGAACATGTCGCTGAACAGCATGCTCGACA                                                                       >  NB501016:282:H2V7GAFX2:1:21209:20475:11676/1‑149 (MQ=60)
                                                                          GTAAAAACAACCCGGGCGGGATCGCATTCATGAAGATTTTGCAATAAACCAGTCCGCCGATCGTTGCGCCAGATCAGCGGCAAGGCCGATTACTGCTGGGTTTCCTGCTCGCTGAACATGTCGCTGAACAGCATGCTCGACAAGTATCGCT                                                              >  NB501016:282:H2V7GAFX2:3:21509:8471:10953/1‑151 (MQ=60)
                                                                                    CCCGGGCGGGATCGCATTCATGAAGATTTTGCAATAAACCAGTCCGCCGATCGTTGCGCCAGATCAGCGGCAAGGCCGATTACTGCTGGGTTTCCTGCTCGCTGAA                                                                                                 >  NB501016:282:H2V7GAFX2:4:21411:11330:9764/1‑106 (MQ=60)
                                                                                         GCGGGATCGCATTCATGAAGATTTTGCAATAAACCAGTCCGCCGATCGTTGCGCCAGATCAGCGGCAAGGCCGATTACTGCTGGGTTTCCTGCTCGCTGAACATGTCGCTGAACAGCATGCTCGACAAGTATCGCTCGCCCGAATCGGGCA                                               <  NB501016:282:H2V7GAFX2:2:21207:22899:12209/151‑1 (MQ=60)
                                                                                          CGGGATCGCATTCATGAAGATTTTGCAATAAACCAGTCCGCCGATCGTTGCGCCAGATCAGCGGCAAGGCCGATTACTGCTGGGTTTCCTGCTCGCTGAACATGTCGCTGAACAGCATGCTCGACAAGTATCGCTCGCCCGAATCGGGCAG                                              <  NB501016:282:H2V7GAFX2:2:21106:25620:13299/151‑1 (MQ=60)
                                                                                             GATCGCATTCATGAAGATTTTGCAATAAACCAGTCCGCCGATCGTTGCGCCAGATCAGCGGCAAGGCCGATTACTGCTGGGTTTCCTGCTCGCTGAACATGTCGCTGAACAGCATGCTCGACAAGTATCGCTCGCCCGAATCGGGCAGGAT                                           >  NB501016:282:H2V7GAFX2:3:21609:8696:16215/1‑151 (MQ=60)
                                                                                              ATCGCATTCATGAAGATTTTGCAATAAACCAGTCCGCCGATCGTTGCGCCAGATCAGCGGCAAGGCCGATTACTGCTGGGTTTCCTGCTCGCTGAACATGTCGCTGAACAGCATGCTCGACAAGTATCGCTCGCCCGAATCGGGCAGGAT                                           <  NB501016:282:H2V7GAFX2:2:21311:15332:4941/150‑1 (MQ=60)
                                                                                                      CATGAAGATTTTGCAATAAACCAGTCCGCCGATCGTTGCGCCAGATCAGCGGCAAGGCCGATTACTGCTGGGTTTCCTGCTCGCTGAACATGTCGCTGAACAGCATGCTCGACAAGTATCGCTCGCCCGAATCGGGCAGGATTACGACGAT                                  >  NB501016:282:H2V7GAFX2:3:21411:6895:2323/1‑151 (MQ=60)
                                                                                                        TGAAGATTTTGCAATAAACCAGTCCGCCGATCGTTGCGCCAGATCAGCGGCAAGGCCGATTACTGCTGGGTTTCCTGCTCGCTGAACATGTCGCTGAACAGCATGCTCGACAAGTATCGCTCGCCCGAATCGGGCAGGATTACGACGATGG                                >  NB501016:282:H2V7GAFX2:4:11611:15596:3531/1‑151 (MQ=60)
                                                                                                         GAAGATTTTGCAATAAACCAGTCCGCCGATCGTTGCGCCAGATCAGCGGCAAGGCCGATTACTGCTGGGTTTCCTGCTCGCTGAACATGTCGCTGAACAGCATGCTCGACAAGTATCGCTCGCCCGAATCGGGCAGGATTACGACGATGGT                               >  NB501016:282:H2V7GAFX2:4:11507:8100:19262/1‑151 (MQ=60)
                                                                                                             ATTTTGCAATAAACCAGTCCGCCGATCGTTGCGCCAGATCAGCGGCAAGGCCGATTACTGCTGGGTTTCCTGCTCGCTGAACATGTCGCTGAACAGCATGCTCGACAAGTATCGCTCGCCCGAATCGGGCAGGATTACGACGATGGTCTT                            >  NB501016:282:H2V7GAFX2:4:11402:7207:19982/1‑150 (MQ=60)
                                                                                                               TTTGCAATAAACCAGTCCGCCGATCGTTGCGCCAGATCAGCGGCAAGGCCGATTACTGCTGGGTTTCCTGCTCGCTGAACATGTCGCTGAACAGCATGCTCGACAAGTATCGCTCGCCCGAATCGGGCAGGATTACGACGATGGTCTTAC                          <  NB501016:282:H2V7GAFX2:2:11206:11390:14365/150‑1 (MQ=60)
                                                                                                                   CAATAAACCAGTCCGCCGATCGTTGCGCCAGATCAGCGGCAAGGCCGATTACTGCTGGGTTTCCTGCTCGCTGAACATGTCGCTGAACAGCATGCTCGACAAGTATCGCTCGCCCGAATCGGGCAGGATTACGACGATGGTCTTACCCTGC                     >  NB501016:282:H2V7GAFX2:4:11504:14996:5285/1‑151 (MQ=60)
                                                                                                                   CAATAAACCAGTCCGCCGATCGTTGCGCCAGATCAGCGGCAAGGCCGATTACTGCTGGGTTTCCTGCTCGCTGAACATGTCGCTGAACAGCATGCTCGACA                                                                       <  NB501016:282:H2V7GAFX2:3:21405:1646:1874/101‑1 (MQ=60)
                                                                                                                    AATAAACCAGTCCGCCGATCGTTGCGCCAGATCAGCGGCAAGGCCGATTACTGCTGGGTTTCCTGCTCGCTGAACATGTCGCTGAACAGCATGCTCGACAAGTATCGCTCGCCCGAATCGGGCAGGATTACGACGATGGTCTTACCCTGC                     >  NB501016:282:H2V7GAFX2:4:21603:6278:10521/1‑150 (MQ=60)
                                                                                                                           CAGTCCGCCGATCGTTGCGCCAGATCAGCGGCAAGGCCGATTACTGCTGGGTTTCCTGCTCGCTGAACATGTCGCTGAACAGCATGCTCGACAAGTATCGCTCGCCCGAATCGGGCAGGATTACGACGATGGTCTTACCCTGCATTTCCGG             <  NB501016:282:H2V7GAFX2:4:11408:15988:5260/151‑1 (MQ=60)
                                                                                                                           CAGTCCGCCGATCGTTGCGCCAGATCAGCGGCAAGGCCGATTACTGCTGGGTTTCCTGCTCGCTGAACATGTCGCTGAACAGCATGCTCGACAAGTATCGCTCGCCCGAATCGGGCAGGATTACGACGATGGTCTTACCCTGCATTTCCGG             <  NB501016:282:H2V7GAFX2:1:11105:4006:8952/151‑1 (MQ=60)
                                                                                                                            AGTCCGCCGATCGTTGCGCCAGATCAGCGGCAAGGCCGATTACTGCTGGGTTTCCTGCTCGCTGAACATGTCGCTGAACAGCATGCTCGACAAGTATCGCTCGCCCGAATCGGGCAGGATTACGACGATGGTCTTACCCTGCATTTCCGGT            <  NB501016:282:H2V7GAFX2:4:21505:9829:12450/151‑1 (MQ=60)
                                                                                                                               CCGCCGATCGTTGCGCCAGATCAGCGGCAAGGCCGATTACTGCTGGGTTTCCTGCTCGCTGAACATGTCGCTGAACAGCATGCTCGACAAGTATCGCTCGCCCGAATCGGGCAGGATTACGACGATGGTCTTACCCTGCATTTCCGGTTTT         >  NB501016:282:H2V7GAFX2:4:11404:24651:10590/1‑151 (MQ=60)
                                                                                                                               CCGCCGATCGTTGCGCCAGATCAGCGGCAAGGCCGATTACTGCTGGGTTTCCTGCTCGCTGAACATGTCGCTGAACAGCATGCTCGACAAGTATCGCTCGCCCGAATCGGGCAGGATTACGACGATGGTCTTACCCTGCATTTCCGGTTTT         <  NB501016:282:H2V7GAFX2:1:21305:17006:1881/151‑1 (MQ=60)
                                                                                                                                CGCCGATCGTTGCGCCAGATCAGCGGCAAGGCCGATTACTGCTGGGTTTCCTGCTCGCTGAACATGTCGCTGAACAGCATGCTCGACAAGTATCGCTCGCCCGAATCGGGCAGGATTACGACGATGGTCTTACCCTGCATTTCCGGTTTTT        >  NB501016:282:H2V7GAFX2:2:11311:22198:9531/1‑151 (MQ=60)
                                                                                                                                     ATCGTTGCGCCAGATCAGCGGCAAGGCCGATTACTGCTGGGTTTCCTGCTCGCTGAACATGTCGCTGAACAGCATGCTCGACAAGTATCGCTCGCCCGAATCGGGCAGGATTACGACGATGGTCTTACCCTGCATTTCCGGTTTTTCGGCC   <  NB501016:282:H2V7GAFX2:2:11212:17918:2732/151‑1 (MQ=60)
                                                                                                                                       CGTTGCGCCAGATCAGCGGCAAGGCCGATTACTGCTGGGTTTCCTGCTCGCTGAACATGTCGCTGAACAGCATGCTCGACAAGTATCGCTCGCCCGAATCGGGCAGGATTACGACGATGGTCTTACCCTGCATTTCCGGTTTTTCGGCCA  <  NB501016:282:H2V7GAFX2:4:11412:17093:6542/150‑1 (MQ=60)
                                                                                                                                                AGATCAGCGGCAAGGCCGATTACTGCTGGGTTTCCTGCTCGCTGAACATGTCGCTGAACAGCATGCTCGACAAGTATCGCTCGCCCGAATCGGGCAGGATTACGACGATGGTCTTACCCTGCATTTCCGGTTTTTCGG     <  NB501016:282:H2V7GAFX2:3:21511:12718:15834/138‑1 (MQ=60)
                                                                                                                                                |                                                                                                                                            
CTTGAGGAAGAGTCACGGCTGCGCTGCCTGCTCTCCAGAAAATCATCCTGCCATCATAAACCGATCCCGCCGCGGTAAAAACAACCCGGGCGGGATCGCATTCATGAAGATTTTGCAATAAACCAGTCCGCCGATCGTTGCGCCGGATCAGCGGCAAGGCCGATTACTGCTGGGTTTCCTGCTCGCTGAACATGTCGCTGAACAGCATGCTCGACAAGTATCGCTCGCCCGAATCGGGCAGGATTACGACGATGGTCTTACCCTGCATTTCCGGTTTTTCGGCCA  >  NC_002947_CJ‑RC/5191979‑5192263

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 0 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑