Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A0 F0 I1 R1
|
59 |
79.3 |
3391134 |
98.6% |
3343658 |
146.3 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| RA |
NC_002947_CJ‑RC |
5,677,568 |
G→C |
intergenic (+115/+25) |
rhlE‑II → / ← yceI |
ATP‑dependent RNA helicase/polyisoprene‑binding acidic stress response factor |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NC_002947_CJ‑RC | 5,677,568 | 0 | G | C | 98.7%
| 262.9
/ NA
| 75 | intergenic (+115/+25) | rhlE‑II/yceI | ATP‑dependent RNA helicase/polyisoprene‑binding acidic stress response factor |
| Reads supporting (aligned to +/- strand): ref base G (1/0); new base C (36/38); total (37/38) |
| Fisher's exact test for biased strand distribution p-value = 4.93e-01 |
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 |
CCAGCGCTGCTGACCCGCAAGGGCTGATAGAAGTACCGAGGGGGCTGCTTCGCAGCCCTATCACGACACAAGGCCGCTCCTGCAGAGAATTTCTTGATCTCTACAGGAGCGGCCTTGTGTCGTGATAGGGCCGCAAA‑GC‑GCGCCCTCGGTTTTCAGCTGGCAGAAATTACTTCTGCTTCACACCTTCGACACTGATATCCAGGTCCAGGGTCTGCGAAGTAGCACCCGGGCCTTTGATGCCGAAGTCGTTCAGGTTCAGCGTGGTGGTGGCGTTGAAGC > NC_002947_CJ‑RC/5677427‑5677705
|
ccAGCGCTGCTGACCCGCAAGGGCTGATAGAAGTACCGAGGGGGCTGCTTCGCAGCCCTATCACGACACAAGGCCGCTCCTGCAGAGAATTTCTTGATCTCTACAGGAGCGGCCTTGTGTCGTGATAGGGCCGCAAA‑GCGGCCCCCTCg > 4:134313/1‑149 (MQ=255)
gcgcTGCTGACCCGCAAGGGCTGATAGAAGTACCGAGGGGGCTGCTTCTCAGCCCTATCACGACACAAGGCCGCTCCTGCAGATAATTTCTTGATCTCTACAGGAGCGGCCTTGTGTCGTGATAGGGCCGCAAA‑GCGGCCCCCTCGGtt < 2:292462/149‑1 (MQ=38)
cgcTGCTGACCCGCAAGGGCTGATAGAAGTACCGAGGGGGCTGCTTCGCAGCCCTATCACGACACAAGGCCGCTCCTGCAGAGAATTTCTTGATCTCTACAGGAGCGGCCTTGTGTCGTGATAGGGCCGCAAA‑GCGGCCCCCTCGGttt > 2:303188/1‑149 (MQ=255)
gctgctGACCCGCAAGGGCTGATAGAAGTACCGAGGGGGCTGCTTCGCAGCCCTATCACGACACAAGGCCGCTCCTGCAGAGAATTTCTTGATCTCTACAGGAGCGGCCTTGTGTCGTGATAGGGCCGCAAA‑GCGGCCCCCTCGGtttt < 3:121184/149‑1 (MQ=255)
tgctgACCCGCAAGGGCTGATAGAAGTACCGAGGGGGCTGCTTCGCAGCCCTATCACGACACAAGGCCGCTCCTGCAGAGAATTTCTTGATCTCTACAGGAGCGGCCTTGTGTCGTGATAGGGCCGCAAA‑GCGGCCCCCTCGGtttt > 1:168437/1‑147 (MQ=255)
cggACCCGCAAGGGCTGATAGACGAACCGAGGGGGCTGCTTCGCAGCCCAATCACGACACAAGGCCGCTCCTGCAGAGAATTTCTTGATCTCTACAGCAGCGGCCTTGTGTCGTGATAGGGCCGCAAA‑GCGGCCCCCTCGGTTTTCa < 7:23645/145‑1 (MQ=37)
ccGCAAGGGCTGATAGAAGTACCGAGGGGGCTGCTTCGCCGCCCTATCACGACACAAGGCCGCTCCTGCAGAGAATTTCTTGATCTCTACAGGAGCGGCCTTGTGTCGTGATAGGGCCGCAAA‑GCGGCCCCCTCGGTTTTCAGCTgg > 4:58950/1‑147 (MQ=255)
cGCAAGGGCTGATAGAAGTACCGAGGGGGCTGCTTCGCAGCCCTATCACGACACAAGGCCGCTCCTGCAGAGAATTTCTTGATCTCTACAGGAGCGGCCTTGTGTCGTGATAGGGCCGCAAA‑GCGGCCCCCTCGGTTTTCAGCTgg > 8:8987/1‑146 (MQ=255)
aGGGCTGATAGAAGTACCGAGGGGGCTGCTTCGCAGCCCTATCACGACACAAGGCCGCTCCTGCAGAGAATTTCTTGATCTCTACAGGAGCGGCCTTGTGTCGTGATAGGGCCGCAAA‑GCGGCCCCCTCGGTTTTCAGCTGGCAGAAAt < 3:164750/149‑1 (MQ=255)
ggCTGATAGTAGTACGGAGGGGGCTGCTTCGCAGCCCTATCACGTCACTTGGCCGCTCCTGATGAGAATTTCTTGATCTCTACAGGAGCGGCCTTGTGTCGTGATATGGCCGCAAA‑GCGGCCCCCTCGGTTTTCAGCTGGCAGAAATTa < 5:381753/149‑1 (MQ=37)
cTGATAGAAGTACCGAGGGGGCTGCTTCGCAGCCCTATCACGCCACAAGGCCGCTCCTGCAGAGAAGTTCTTGCTCTGTTCAGGGGCGGCCTTGTGTCGTGATCGGGCCGCAAA‑GCGGCCCCCTCGGGTTTCAGCTGGCAGCAATTTCt > 1:331773/1‑149 (MQ=255)
aTAGACGCACCGCGGGGGCTGCTCCGCAGCCCTAGCACGACACACGGCCGCTCCTGCAGAGAATTTCTTGATCTCTACAGGAGCGGCCTTGTGTCGTGATAGGGCCGCAAA‑GCGGCCCCCTCGGTTTTCAGCTGGCAGAAATTACTTc < 4:270265/148‑1 (MQ=37)
aTAGAAGTACCGATGGGGCTGCTTCGCTGCCCTATCACGACACAAGGCCGCTCCTGCAGAGAATTTCTTGATCTCTACAGGAGCGGCCTTGTGTCTTGATAGGGCCGCAAA‑GCGGCCCCCTCGGTTTTCAGCTGGCAGAAATTACtt < 8:174728/147‑1 (MQ=37)
gAAGTCCCGAGGGGGCTGCTTCGCAGCCCTATCACGACACAAGGCCGCTCCTGCAGAGAATTTCTTGATCTCTACAGGAGCGGCCTTGTGTCGTGATAGGGCCGCAAA‑GCGGCCCCCTCGGTTTTCAGCTGGCAGAAATTACTTCTGc < 4:7056/148‑1 (MQ=255)
gAAGTACCGAGGGGGCTGCTTCGCAGCCCTATCACGACACAAGGCCGCTCCTGCAGAGAATTTCTTGATCTCTACAGGAGCGGCCTTGTGTCGTGATAGGGCCGCAAA‑GCGGCCCCCTCGGTTTTCAGCTGGCAGAAATTACTTCTGc < 2:168437/148‑1 (MQ=255)
gAAGTACCGAGGGGGCTGCTTCGCAGCCCTATCACGACACAAGGCCGCTCCTGCAGAGAATTTCTTGATCTCTACAGGAGCGGCCTTGTGTCGTGATAGGGCCGCAAA‑GCGGCCCCCTCGGTTTTCAGCTGGCAGAAATTACTTCTGCt < 4:35174/149‑1 (MQ=255)
aGTACCGAGGGGGCTGCTTCGCAGCCCTATCACGACACAAGGCCGCTCCTGCAGAGAATTTCTTGATCTCTACAGGAGCGGCCTTGTGTCGTGATAGGGCCGCAAA‑GCGGCCCCCTCGGTTTTCAGCTGGCAGAAATTACTTCTGCTTc < 2:90954/149‑1 (MQ=255)
tACCGAGGGGGCTGCTTCGCAGCCCTATCACGACACAAGGCCGCTCCTGCAGAGAATTTCTTGATCTCTACAGGAGCGGCCTTGTGTCGTGATAGGGCCGCAAAGGG‑GCGCCCGCGGGTTTCAGGTGGCAGAAATTACTTCTGCTTca > 4:232200/1‑148 (MQ=38)
tgctTCGCAGCCCTATCACGACACAAGGCCGCTCCTGCAGAGAATTTCTTGATCTCTACAGGAGCGGCCTTGTGTCGTGATAGGGCCGCAAA‑GCGGCCCCCTCGGTTTTCAGCTGGCAGAAATTACTTCTGCTTCACACCTTCGACACt > 6:166720/1‑149 (MQ=255)
ctTCGCAGCCCTATCACGACACAAGGCCGCTCCTGCAGAGAATTTCTTGATCTCTACAGGAGCGGCCTTGTGTCGTGATAGGGCCGCAAA‑GCGGCCCCCTCGGTTTTCAGCTGGCAGAAATTACTTCTGCTTCACACCTTCGACACTGa < 5:274047/149‑1 (MQ=255)
ttCGCAGCCCTATCACGACACAAGGCCGCTCCTGCAGAGAATTTCTTGATCTCTACAGGAGCGGCCTTGTGTCGTGATAGGGCCGCAAA‑GCGGCCCCCTCGGTTTTCAGCTGGCAGAAATTACTTCTGCTTCACACCTTCGACACTGa > 4:91015/1‑148 (MQ=255)
ttCGCAGCCCTATCACGACACAAGGCCGCTCCTGCAGAGAATTTATTCATGTCTACAGGAGCGGCCTTGTGTCGTGAAAGGGCCGCAAA‑GCGGCCCCCGCGGTTTTCAGCTGGCTGAAATTAATTCTGCATCCCACCTTCGACACtca > 4:332712/1‑146 (MQ=25)
gCAGCCCTATCACGACACAAGGCCGCTCCTGCAGAGAATTTCTTGATCTCTACAGGAGCGGCCTTGTGTCGTGATAGGGCCGCAAA‑GCGGCCCCCTCGGTTTTCAGCTGGCAGAAATTACTTCTGCTTCACACCTTCGACACTGatat < 5:316785/148‑1 (MQ=255)
gCAGCCCTATCACGACACAAGCCCGCTCCTGCAGAGAATTTCTTGATCTCTACAGGAGCGGCCTTGTGTCGTGATAGGGCCGCAAA‑GCGGCCCCCTCGGTTTTCAGCTGGCAGAAATTACTTCTGCTTCACACCTTCGACACTGATAtc < 8:187312/149‑1 (MQ=255)
aGCCCTATCACGACACAAGGCCGCTCCTGCAGAGAATTTCTTGATCTCTACAGGAGCGGCCTTGTGTCGTGATAGGGCCGCAAA‑GCGGCCCCCTCGGTTTTCAGCTGGCAGAAATTACTTCTGCTTCACACCTTCGACACTGATAtcca < 7:382212/149‑1 (MQ=255)
ccTATCACGACACAAGGCCGCTCCTGCAGAGAATTTGTTGATCTCTACAGGAGCGGCCTTGTGTCGTGTTAGGGCCGCAAA‑GCGGCCCCCTCGGTTTTCAGCTGGGAGAAATTACTTCTGCTTCCCACCTTCGACACTGGTAtccaggt > 7:411380/1‑149 (MQ=37)
tCACGACACAAGGCCGCTCCTGCAGAGAATTTCTTGATCTCTACAGGAGCGGCCTTGTGTCGTGATAGGGCCGCAAA‑GCGGCCCCCTCGGTTTTCAGCTGGCAGAAATTACTTCTGCTTCACACCTTCGACACTGATAtccaggtccag < 3:58950/149‑1 (MQ=255)
tCACGACACAAGGCCGCTCCTGCAGAGAATTTCTTGATCTCTACAGGAGCGGCCTTGTGTCGTGATAGGGCCGCAAA‑GCGGCCCCCTCGGTTTTCAGCTGGCAGAAATTACTTCTGCTTCACACCTTCGACACTGATAtccaggtccag > 2:264700/1‑149 (MQ=255)
cACGACACAAGGCCGCTCCTGCAGAGAATTTCTTGATCTCTACAGGAGCGGCCTTGTGTCGTGATAGGGCCGCAAA‑GCGGCCCCCTCGGTTTTCAGCTGGCAGAAATTACTTCTGCTTCACACCTTCGa > 5:163003/1‑129 (MQ=255)
cACGACACAAGGCCGCTCCTGCAGAGAATTTCTTGATCTCTACAGGAGCGGCCTTGTGTCGTGATAGGGCCGCAAA‑GCGGCCCCCTCGGTTTTCAGCTGGCAGAAATTACTTCTGCTTCACACCTTCGa < 6:163003/129‑1 (MQ=255)
acacAAGGCCGCTCCTGCAGAGAATTTCTTGATCTCTACAGGAGCGGCCTTGTGTCGTGATAGGGCCGCAAA‑GCGGCCCCCTCGGTTTTCAGCTGGCAGAAATTACTTCTGCTTCACACCTTCGACACTGATATCCAGGTCCAGGGTCt > 5:372101/1‑149 (MQ=255)
acaAGGCCGCTCCTGCAGAGAATTTCTTGATCTCTACAGGAGCGGCCTTGTGTCGTGATAGGGCCGCAAA‑GCGGCCCCCTCGGTTTTCAGCTGGCAGAAATTACTTCTGCTTCACACCTTCGACACTGATATCCAGGTCCAGGGTCTGc < 6:409094/149‑1 (MQ=255)
aaGGCCGCTCCTGCAGAGAATTTCTTGATCTCTACAGGAGCGGCCTTGTGTCGTGATAGGGCCGCAAA‑GCGGCCCCCTCGGTTTTCAGCTGGCAGAAATTACTTCTGCTTCACACCTTCGACACTGATATCCAGGTCCAGGGTCTGCGa > 8:299617/1‑149 (MQ=255)
aGGCCGCTCCTGGATAGAATTTCTTGTTCTCTACAGGAGCGGCCTTGTGTCGTGATAGGGCCGCAAA‑GCGGCCCCCTCGGTTTTCAGCTGGCAGAAATTACTTCTGCTTCACACCTTCGACACTGATATCCAGGTCCAGGGTCTGCGaa < 6:345902/149‑1 (MQ=38)
aGGCCGATCCTGCATATAATTTCTTGATCTCTCCAGTAGCGGCCTTGTGTCGTGATAGGGCCGCAAA‑GCGGCCCCCTCGGTTTTCAGCTGGCAGAAATTACTTCTGCTTCACACCTTCGACACTGATATCCAGGTCCAGGGTCTGCGaa < 6:340078/149‑1 (MQ=38)
gCCGCTCCTGCAGAGAATTTCTTGATCTCTACAGGAGCGGCCTTGTGTCGTGATAGGGCCGCAAA‑GCGGCCCCCTCGGTTTTCAGCTGGCAGAAATTACTTCTGCTTCACACCTTCGACACTGATATCCAGGTCCAGGGTCTGCGAAg > 7:342067/1‑148 (MQ=255)
gCTCCTGCAGAGAATTTCTTGATCTCTACAGGAGCGGCCTTGTGTCGTGATAGGGCCGCAAA‑GCGGCCCCCTCGGTTTTCAGCTGGCAGAAAATACTTCTGCTTCACACCTTCGACACTGATATCCAGGTCCAGGGTCTGCGAAGTAg > 2:160890/1‑148 (MQ=255)
taatGCACAGAATTTCTTGATCTATACAGGAGCGGCCTTGAGACGTGATAGGTCCTCAAA‑GCGGCCCCATCGGTTTACACATCGCAGAAATTACATCTGCTTCACACCTTCGACACTGATATCCAGGTCCAGGGTCTGCGAAGAAGCAc > 4:119231/4‑149 (MQ=255)
tCCTGCAGAGAATTTCTTGATCTCTACAGGAGCGGCCTTGTGTCGTGATAGGGCCGCAAA‑GCGGCCCCCTCGGTTTTCAGCTGGCAGAAATTACTTCTGCTTCACACCTTCGACACTGATATCCAGGTCCAGGGTCTGCGAAGTAGCAc > 3:76755/1‑149 (MQ=255)
ccTGCAGAGAATTTCTTGATCTCTACAGGAGCGGCCTTGTGTCGTGATAGGGCCGCAAA‑GCGGCCCCCTCGGTTTTCAGCTGGCAGAAATTACTTCTGCTTCACACCTTCGACACTGATATCCAGGTCCAGGGTCTGCGAAGTAGCAcc < 8:353961/149‑1 (MQ=255)
gCAGAGAATTTCTTGATCTCTACAGGAGCGGCCTTGTGTCGTGATAGGGCCGCAAA‑GCGGCCCCCTCGGTTTTCAGCTGGCAGAAATTACTTCTGCTTCACACCTTCGACACTGATATCCAGGTCCAGGGTCTGCGAAGTAGCACCCgg > 6:317953/1‑149 (MQ=255)
gCAGAGAATTTCTTGATCTCTACAGGAGCGGCCTTGTGTCGTGATAGGGCCGCAAA‑GCGGCCCCCTAGGTTTTCAGCTGGCAGAAATTACTTCTGCTTCACACCTTCGACACTGATATCCAGGTCCAGGGTCTGCGAAGTAGCACCCgg > 5:281906/1‑149 (MQ=255)
cAGAGAATTTCTTGATCTCTACAGGAGCGGCCTTGTGTCGTGATAGGGCCGCAAA‑GCGGCCCCCTCGGTTTTCAGCTGGCAGAAATTACTTCTGCTTCACACCTTCGACACTGATATCCAGGTCCAGGGTCTGCGAAGTAGCACCCgg < 1:90665/148‑1 (MQ=255)
gagaATTTCTTGATCTCTACAGGAGCGGCCTTGTGTCGTGATAGGGCCGCAAA‑GCGGCCCCCTCGGTTTTCAGCTGGCAGAAATTACTTCTGCTTCACACCTTCGACACTGATATCCAGGTCCAGGGTCTGCGAAGTAGCACCCGGGcc < 8:315686/149‑1 (MQ=255)
gaATTTCTTGATCTCTACAGGAGCGGCCTTGTGTCGTGATAGGGCCGCAAA‑GCGGCCCCCTCGGTTTTCAGCTGGCAGAAATTACTTCTGCTTCACACCTTCGACACTGATATCCAGGTCCAGGGTCTGCGAAGTAGCACCCGGGCCtt < 3:131794/149‑1 (MQ=255)
aaTTTCTTGATCTCTACAGGAGCGGCCTTGTGTCGTGATAGGGCCGCAAA‑GCGGCCCCCTCGGTTTTCAGCTGGCAGAAATTACTTCTGCTTCACACCTTCGACACTGATATCCAGGTCCAGGGTCTGCGAAGAAGCACCCGGGCCttt > 2:389019/1‑149 (MQ=255)
aTTTCTTGATCTCTACAGGAGCGGCCTTGTGTCGTGATAGGGCCGCAAA‑GCGGCCCCCTCGGTTTTCAGCTGGCAGAAATTACTTCTGCTTCACACCTTCGACACTGATATCCAGGTCCAGGGTCTGCGAAGTAGCACCCGGGCCttt < 6:58046/148‑1 (MQ=255)
tttCTTGATCTCTACAGGAGCGGCCTTGTGTCGTGATAGGGCCGCAAA‑GCGGCCCCCTCGGTTTTCAGCTGGCAGAAATTACTTCTGCTTCACACCTTCGACACTGATATCCAGGTCCAGGGTCTGCGAAGTAGCACCCGGGCCTTTGa > 5:239936/1‑149 (MQ=255)
ttCTTGATCTCTACAGGAGCGGCCTTGTGTCGTGATAGGGCCGCAAA‑GCGGCCCCCTCGGTTTTCAGCTGGCAGAAATTACTTCTGCTTCACACCTTCGACACTGATATCCAGGTCCAGGGTCTGCGAAGTAGCACCCGGGCCTTTGAt > 6:147817/1‑149 (MQ=255)
gATCTCTACAGGAGCGGCCTTGTGTCGTGATAGGGCCGCAAA‑GCGGCCCCCTCGGTTTTCAGCTGGCAGAAATTACTTCTGCTTCACACCTTCGACACTGATATCCAGGTCCAGGGTCTGCGAAGTAGCACCCGGGCCTTTGATGcc < 5:166720/147‑1 (MQ=255)
gATCTCTACAGGAGCGGCCTTGTGTCGTGATAGGGCCGCAAA‑GCGGCCCCCTCGGTTTTCAGCTGGCAGAAATTACTTCTGCTTCACACCTTCGACACTGATATCCAGGTCCAGGGTCTGCGAAGTAGCACCCGGGCCTTTGATGCCg > 2:92615/1‑148 (MQ=255)
aTCTCTACAGGAGCGGCCTTGTGTCGTGATAGGGCCGCAAA‑GCGGCCCCCTCGGTTTTCAGCTGGCAGAAATTACTTCTGCTTCACACCTTCGACACTGATATCCAGGTCCAGGGTCTGCGAAGTAGCACCCGGGCCTTTGATGCCg > 8:46093/1‑147 (MQ=255)
tctcTACAGGAGCGGCCTTGTGTCGTGATAGGGCCGCAAA‑GCGGCCCCCTCGGTTTTAAGCTGGCAGAAATTACTTCTGCTTCACACCTTAGACACTGATATCCAGGTCCAGGGTCTGCGAAGTAGCACCCGGGCCTTTGATGCCGAAg > 1:345736/1‑149 (MQ=39)
tACAGGAGCGGCCTTGTGTCGTGATAGGGCCGCAAA‑GCGGCCCCCTCGGTTTTCAGCTGGCAGAAATTACTTCTGCTTCACACCTTCGACACTGATATCCAGGTCCAGGGTCTGCGAAGTAGCACCCGGGCCTTTGATGCCGaa < 8:257135/144‑1 (MQ=255)
aCAGGAGCGGCATTGTGTCGTTATAGGGCCGCAAA‑GCGGCCCCCTCGGTTTTCAGCTGGCAGAAATTACTTCTGCTTCACACCTTCGACACTGATATCCAGGTCCAGGGTCTGCGAAGTAGCACCCGGGCCTTTGATGCCGAAGTCgtt < 2:165815/149‑1 (MQ=255)
cAGGAGCGGCCTTGTGTCGTGATAGGGCCGCAAA‑GCGGCCCCCTCGGTTTTCAGCTGGCAGAAATTACTTCTGCTTCACACCTTCGACACTGATATCCAGGTCCAGGGTCTGCGAAGTAGCACCCGGGCCTTTGATGCCGAAGTCgt < 2:4586/147‑1 (MQ=255)
ggAGCGGCCTTGTGTCGTGATAGGGCCGCAAA‑GCGGCCCCCTCGGTTTTCAGCTGGCAGAAATTACTTCTGCTTCACACCTTCGACACTGATATCCAGGTCCAGGGTCTGCGAAGTAGCACCCGGGCCTTTGATGCCGAAGTCgttcag < 1:12025/149‑1 (MQ=255)
aGCGGCCTTGTGTCGTGATAGGGCCGCAAA‑GCGGCCCCCTCGGTTTTCAGCTGGCAGAAATTACTTCTGCTTCACACCTTCGACACTGATATCCAGGTCCAGGGTCTGCGAAGTAGCACCCGGGCCTTTGATGCCGAAGTCgttcaggt > 1:227663/1‑149 (MQ=255)
gCGGCCTTGTGTCGTGATAGGGCCGCAAA‑GCGGCCCCCTCGGTTTTCAGCTGGCAGAAATTACTTCTGCTTCACACCTTCGACACTGATATCCAGGTCCAGGGTCTGCGAAGTAGCACCCGGGCCTTTGATGCCGAAGTCgttcaggtt < 7:8987/149‑1 (MQ=255)
gCGGCCTTGTGTCGTGATAGGGCCGCAAA‑GCGGCCCCCTCGGTTTTCAGCTGGCAGAAATTACTTCTGCTTCACACCTTCGACACTGATATCCAGGTCCAGGGTCTGCGAAGTAGCACCCGGGCCTTTGATGCCGAAGTCgttcaggt > 7:84790/1‑148 (MQ=255)
ggCCTTGTGTCGTGATAGGGCCGCAAA‑GCGGCCCCCTCGGTTTTCAGCTGGCAGAAATTACTTCTGCTTCACACCTTCGACACTGATATCCAGGTCCAGGGTCTGCGAAGTAGCACCCGGGCCTTTGATGCCGAAGTCgttcaggttca < 3:405408/149‑1 (MQ=255)
gTGATAGGGCCGCAAA‑GCGGCCCCCTCGGTTTTCAGCTGGCAGAAATTACTTCTGCTTCACACCTTCGACACTGATATCCAGGTCCAGGGTCTGCGAAGTAGCACCCGGGCCTTTGATGCCGAAGTCGTTCAGGTTCAGCgtggtggtg > 8:289476/1‑149 (MQ=255)
gTGATAGGGCCGCAAA‑GCGGCCCCCTCGGTTTTCAGCTGGCAGAAATTACTTCTGCTTCACACCTTCGACACTGATATCCAGGTCCAGGGTCTGCGAAGTAGCACCCGGGCCTTTGATGCCGAAGTCGTTCAGGTTCAGCgtggtggtg < 2:227663/149‑1 (MQ=255)
tAGGGCCGCAAA‑GCGGCCCCCTCGGTTTTCAGCTGGCAGAAATTACTTCTGCTTCACACCTTCGACACTGATATCCAGGTCCAGGGTCTGCGAAGTAGCACCCGGGCCTTTGATGCCGAAGTCGTTCAGGTTCAGCGTGGTGGTGGCGt < 1:92615/149‑1 (MQ=255)
tAGGGCCGCAAA‑GCGGCCCCCTCGGTTTTCAGCTGGCAGAAATTACTTCTGCTTCACACCTTCGACACTGATATCCAGGTCCAGGGTCTGCGAAGTAGCACCCGGGCCTTCGATGCCGAAGTCGTTCAGGTTCAGCGTGGTGGTGGCGt < 1:264700/149‑1 (MQ=255)
gggCCGCAAA‑GCGGCCCCCTCGGTTTTCAGCTGGCAGAATTTACTTCTGCTTCACACCTTCGACACTGATATCCAGGTCCAGGGTCTGCGAAGTAGCACCCGGGCCTTTGATGCCGAAGTCGTTCAGGTTCAGCGTGGTGGTGGCGtt > 3:376909/1‑148 (MQ=255)
gggCCGCAAA‑GCGGCCCCCTCGGTTTTCAGCTGGCAGAAATTACTTCTGCTTCACACCTTCGACACTGATATCCAGGTCCAGGGTCTGCGAAGTAGCACCCGGGCCTTTGATGCCGAAGTCGTTCAGGTTCAGCGTGGTGGTGGCGtt > 6:343322/1‑148 (MQ=255)
gggCCGCAAA‑GCGGCCCCCTCGGTTTTCAGCTGGCAGAAATTACTTCTGCTTCACACCTTCGACACTGATATCCAGGTCCAGGGTCTGCGAAGTAGCACCCGGGCCTTTGATGCCGAAGTCGTTCAGGTTCAGCGTGGTGGTGGCGtt > 8:73385/1‑148 (MQ=255)
gCCGTAAA‑GCGGCCCCCGCGGTTTTCAGCTGGCAGAAATTACTTCTGCTTCACACCTTCGACACTGATATCCAGGTCCAGGGTCTGCGAAGTAGCACCCGGGCCTTTGATGCCGAAGTCGTTCAGGTTCAGCGTGGTGGTGGCGTTGaa < 4:28532/149‑1 (MQ=255)
gCCGCAAT‑GCGGCCCCCTCGGTTTTCAGCTGGCAGAAATTACTTCTGCTTCACACCTTCGACACTGATATCCAGGTCCAGGGTCTGCGAAGTAGCACCCGGGCCTTTGATGCCGAAGTCGTTCAGGTTCAGCGTGGTGGTGGCGTTGaa < 4:8390/149‑1 (MQ=255)
gCCGCAAA‑GCGGCCCCCTCGGTTTTCAGCTGGCAGAAATTACTTCTGCTTCACACCTTCGACACTGATATCCAGGTCCAGGGTCTGCGAAGTAGCACCCGGGCCTTTGATGCCGAAGTCGTTCAGGTTCAGCGTGGTGGTGGCGTTg > 6:402385/1‑147 (MQ=255)
ccGCAAA‑GCGGCCCCCTCGGTTTTCAGCTGGCAGAAATTACTTCTGCTTCACACCTTCGACACTGATATCCAGGTCCAGGGTCTGCGAAGTAGCACCCGGGCCTTTGATGCCGAAg < 4:359612/116‑1 (MQ=255)
ccGCAAA‑GCGGCCCCCTCGGTTTTCAGCTGGCAGAAATTACTTCTGCTTCACACCTTCGACACTGATATCCAGGTCCAGGGTCTGCGAAGTAGCACCCGGGCCTTTGATGCCGAAg > 3:359612/1‑116 (MQ=255)
gCAAA‑GCGGCCCCCTCGGTTTTCAGCTGGCACAAATTACTTCTGCTTCACACCATCGACACTGATATCAAGGTCCAGGGTCTGCGAAGTAGCACCCGGGCCTTTGATGCCGAAGTCGTTCAGGTTCAGCGTGGTGGTGGCGTAGAAGc > 3:264032/1‑148 (MQ=255)
cAAA‑GCGGCCCCCTCGGTTTTCAGCTGGCAGAAATTACTTCTGCTTCACACCTTCGACACTGATATCCAGGTCCAGGGTCTGCGAAGTAGCACCCGGGCCTTTGATGCCGAAGTCGTTCAGGTTCAGCGTGGTGGTGGCGTTGAAGc > 4:270333/1‑147 (MQ=255)
|
CCAGCGCTGCTGACCCGCAAGGGCTGATAGAAGTACCGAGGGGGCTGCTTCGCAGCCCTATCACGACACAAGGCCGCTCCTGCAGAGAATTTCTTGATCTCTACAGGAGCGGCCTTGTGTCGTGATAGGGCCGCAAA‑GC‑GCGCCCTCGGTTTTCAGCTGGCAGAAATTACTTCTGCTTCACACCTTCGACACTGATATCCAGGTCCAGGGTCTGCGAAGTAGCACCCGGGCCTTTGATGCCGAAGTCGTTCAGGTTCAGCGTGGTGGTGGCGTTGAAGC > NC_002947_CJ‑RC/5677427‑5677705
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
BRESEQ :: bam2aln output
CGCTGCTGACCCGCAAGGGCTGATAGAAGTACCGAGGGGGCTGCTTCGCAGCCCTATCACGACACAAGGCCGCTCCTGCAGAGAATTTCTTGATCTCTACAGGAGCGGCCTTGTGTCGTGATAGGGCCGCAAAGC‑GCGCCCTCGGTTTTCAGCTGGCAGAAATTACTTCTGCTTCACACCTTCGACACTGATATCCAGGTCCAGGGTCTGCGAAGTAGCACCCGGGCCTTTGATGCCGAAGTCGTTCAGGTTCAGCGTGGTGGTGGCGTTGAAGCCAGCGCGCTCG > NC_002947_CJ‑RC/5677431‑5677716
|
CGCTGCTGACCCGCAAGGGCTGATAGAAGTACCGAGGGGGCTGCTTCGCAGCCCTATCACGACACAAGGCCGCTCCTGCAGAGAATTTCTTGATCTCTACAGGAGCGGCCTTGTGTCGTGATAGGGCCGCAAAGCGGCCCCCTCGGTTTTC < NB501016:282:H2V7GAFX2:2:11209:12363:12292/151‑1 (MQ=60)
CTGCTGACCCGCAAGGGCTGATAGAAGTACCGAGGGGGCTGCTTCGCAGCCCTATCACGACACAAGGCCGCTCCTGCAGAGAATTTCTTGATCTCTACAGGAGCGGCCTTGTGTCGTGATAGGGCCGCAAAGCGGCCCCCTCGGTTTTC > NB501016:282:H2V7GAFX2:1:11304:19981:11998/1‑149 (MQ=60)
GCGGACCCGCAAGGGCTGATAGACGAACCGAGGGGGCTGCTTCGCAGCCCAATCACGACACAAGGCCGCTCCTGCAGAGAATTTCTTGATCTCTACAGCAGCGGCCTTGTGTCGTGATAGGGCCGCAAAGCGGCCCCCTCGGTTTTCAG < NB501016:282:H2V7GAFX2:4:11404:9869:16332/149‑1 (MQ=60)
cggggtgagtggagtgcagccgtgggctcttccgatctcgccgccctaaccCGACACAAGGCCGCTCGTGCAGATAATTTCTTCTTCTCTACAGGAGCGGCCTTGTGTCGTTATAGGGCCGCAAAGCGGCCCCCTCGGTTTTCAGCTGGCA < NB501016:282:H2V7GAFX2:3:21512:1824:7382/100‑1 (MQ=60)
AAGGGCTGATAGAAGTACCGAGGGGGCTGCTTCGCAGCCCTATCACGACACAAGGCCGCTCCTGCAGAGAATTTCTTGATCTCTACAGGAGCGGCCTTGTGTCGTGATAGGGCCGCAAAGCGGCCCCCTCGGTTTTCAGCTGGCAGAAATT < NB501016:282:H2V7GAFX2:2:11304:20338:15747/151‑1 (MQ=60)
GGGCTGATAGTAGTACGGAGGGGGCTGCTTCGCAGCCCTATCACGTCACTTGGCCGCTCCTGATGAGAATTTCTTGATCTCTACAGGAGCGGCCTTGTGTCGTGATATGGCCGCAAAGCGGCCCCCTCGGTTTTCAGCTGGCAGAAATTAC < NB501016:282:H2V7GAFX2:3:21605:5433:14684/151‑1 (MQ=60)
GCTGATAGAAGTACCGAGGGGGCTGCTTCGCAGCCCTATCACGCCACAAGGCCGCTCCTGCAGAGAAGTTCTTGCTCTGTTCAGGGGCGGCCTTGTGTCGTGATCGGGCCGCAAAGCGGCCCCCTCGGGTTTCAGCTGGCAGCAATTTCTT > NB501016:282:H2V7GAFX2:1:21208:13169:13536/1‑151 (MQ=60)
ggggctgtttcgaccccctaccaccACACACGGCCGCCCCTGCATATAATTTCTTTAACTCTACAGGAGGGGCTTTGTGTCGTTATAGGGCCGAAAAGCGGCCCCCTCGGTTTTCAGCTGGCAGAAATTACTTCTGCTTCACACCTTCGAC < NB501016:282:H2V7GAFX2:1:21311:3996:3776/126‑1 (MQ=60)
GCTTCGCAGCCCTATCACGACACAAGGCCGCTCCTGCAGAGAATTTCTTGATCTCTACAGGAGCGGCCTTGTGTCGTGGTAGGGCCGCCAAGCGGCCCCCGCGGGTTTCAGCTGGGAGAAATTAattatgcttaaaacctaaggcactga > NB501016:282:H2V7GAFX2:1:21311:16436:4816/1‑124 (MQ=60)
GCTTCGCAGCCCTATCACGACACAAGGCCGCTCCTGCAGAGAATTTCTTGATCTCTACAGGAGCGGCCTTGTGTCGTGATAGGGCCGCAAAGCGGCCCCCTCGGTTTTCAGCTGGCAGAAATTACTTCTGCTTCACACCTTCGACACTGAT < NB501016:282:H2V7GAFX2:3:21411:2352:10072/151‑1 (MQ=60)
CGCAGCCCTATCACGACACAAGGCCGCTCCTGCAGAGAATTTCTTGATCTCTACAGGAGCGGCCTTGTGTCGTGATAGGGCCGCAAAGCGGCCCCCTCGGTTTTCAGCTGGCAGAAATTACTTCTGCTTCACACCTTCGACACTGATATC < NB501016:282:H2V7GAFX2:3:21506:8947:18863/150‑1 (MQ=60)
AAGCCCTATCACGACACAAGGCCGCTCCTGCATACAATTTCTTGATCTCTACTGGAGCGGCCTTGTGTCGTGATAGGGCCGCAAAGCGGCCCCCTCGGTTTTCAGCTGGCAGAAATTACTTCTGCTTCACACCTTCGACACTGATATCCAG < NB501016:282:H2V7GAFX2:4:21603:3636:8147/151‑1 (MQ=60)
CCCTATCACGACACAAGGCCGCTCCTGCAGAGAATTTGTTGATCTCTACAGGAGCGGCCTTGTGTCGTGTTAGGGCCGCAAAGCGGCCCCCTCGGTTTTCAGCTGGGAGAAATTACTTCTGCTTCCCACCTTCGACACTGGTATCCAGGTC > NB501016:282:H2V7GAFX2:4:21608:26101:8040/1‑151 (MQ=60)
ATCACGACACAAGGCCGCTCCTGCAGAGAATTTCTTGATCTCTACAGGAGCGGCCTTGTGTCGTGATAGGGCCGCAAAGCGGCCCCCTCGGTTTTCAGCTGGCAGAAATTACTTCTGCTTCACACCTTCGACACTGATATCCAGGTCCAGG < NB501016:282:H2V7GAFX2:2:11111:18894:4406/151‑1 (MQ=60)
TCACGACACAAGGCCGCTCCTGCAGAGAATTTCTTGATCTCTACAGGAGCGGCCTTGTGTCGTGATAGGGCCGCAAAGCGGCCCCCTCGGTTTTCAGCTGGCAGAAATTACTTCTGCTTCACACCTTCGAC > NB501016:282:H2V7GAFX2:3:11604:17179:7960/1‑131 (MQ=60)
GACACAAGGCCGCTCCTGCAGAGAATTTCTTGATCTCTACAGGAGCGGCCTTGTGTCGTGATAGGGCCGCAAAGCGGCCCCCTCGGTTTTCAGCTGGCAGAAATTACTTCTGCTTCACACCTTCGACACTGATATCCAGGTCCAGGGTCTG > NB501016:282:H2V7GAFX2:3:21604:12305:4472/1‑151 (MQ=60)
GGCCGCTCCTGCAGAGAATTTCTTGATCTCTACAGGAGCGGCCTTGTGTCGTGATAGGGCCGCAAAGCGGCCCCCTCGGTTTTCAGCTGGCAGAAATTACTTCTGCTTCACACCTTCGACACTGATATCCAGGTCCAGGGTCTGCGAAGT > NB501016:282:H2V7GAFX2:4:21508:7612:15238/1‑150 (MQ=60)
CTCCTGCAGAGAATTTCTTGATCTCTACAGGAGCGGCCTTGTGTCGTGATAGGGCCGCAAAGCGGCCCCCTCGGTTTTCAGCTGGCAGAAATTACTTCTGCTTCACACCTTCGACACTGATATCCAGGTCCAGGGTCTGCGAAGTAGCACC > NB501016:282:H2V7GAFX2:2:11202:20879:3932/1‑151 (MQ=60)
TGCAGAGAATTTCTTGATCTCTACAGGAGCGGCCTTGTGTCGTGATAGGGCCGCAAAGCGGCCCCCTAGGTTTTCAGCTGGCAGAAATTACTTCTGCTTAACACCTTCGACACTGATATCCAGGTCCAGGGTCTGCGAAGTAGCACCCGGG > NB501016:282:H2V7GAFX2:3:21412:25217:17827/1‑151 (MQ=60)
GCAGAGAATTTCTTGATCTCTACAGGAGCGGCCTTGTGTCGTGATAGGGCCGCAAAGCGGCCCCCTCGGTTTTCAGCTGGCAGAAATTACTTCTGCTTCACACCTTCGACACTGATATCCAGGTCCAGGGTCTGCGAAGTAGCACCCGGG < NB501016:282:H2V7GAFX2:1:11203:5493:11230/150‑1 (MQ=60)
AGAATTTCTTGATCTCTACAGGAGCGGCCTTGTGTCGTGATAGGGCCGCAAAGCGGCCCCCTCGGTTTTCAGCTGGCAGAAATTACTTCTGCTTCACACCTTCGACACTGATATCCAGGTCCAGGGTCTGCGAAGTAGCACCCGGGCCTTT < NB501016:282:H2V7GAFX2:2:11211:9643:7711/151‑1 (MQ=60)
ATTTCTTGATCTCTACAGGAGCGGCCTTGTGTCGTGATAGGGCCGCAAAGCGGCCCCCTCGGTTTTCAGCTGGCAGAAATTACTTCTGCTTCACACCTTCGACACTGATATCCAGGTCCAGGGTCTGCGAAGTAGCACCCGGGCCTTTGAT > NB501016:282:H2V7GAFX2:3:21405:10671:6707/1‑151 (MQ=60)
TGATCTCTACAGGAGCGGCCTTGTGTCGTGATAGGGCCGCAAAGCGGCCCCCTCGGTTTTCAGCTGGCAGAAATTACTTCTGCTTCACACCTTCGACACTGATATCCAGGTCCAGGGTCTGCGAAGTAGCACCCGGGCCTTTGATGCCG < NB501016:282:H2V7GAFX2:3:11604:18099:19424/149‑1 (MQ=60)
ATCTCTACAGGAGCGGCCTTGTGTCGTGATAGGGCCGCAAAGCGGCCCCCTCGGTTTTAAGCTGGCAGAAATTACTTCTGCTTCACACCTTAGACACTGATATCCAGGTCCAGGGTCTGCGAAGTAGCACCCGGGCCTTTGATGCCGAAGT > NB501016:282:H2V7GAFX2:1:21211:10550:1195/1‑151 (MQ=60)
AGGAGCGGCCTTGTGTCGTGATAGGGCCGCAAAGCGGCCCCCTCGGTTTTCAGCTGGCAGAAATTACTTCTGCTTCACACCTTCGACACTGATATCCAGGTCCAGGGTCTGCGAAGTAGCACCCGGGCCTTTGATGCCGAAGTCGTTCAGG < NB501016:282:H2V7GAFX2:1:11102:8471:17803/151‑1 (MQ=60)
GAGCGGCCTTGTGTCGTGATAGGGCCGCAAAGCGGCCCCCTCGGTTTTCAGCTGGCAGAAATTACTTCTGCTTCACACCTTCGACACTGATATCCAGGTCCAGGGTCTGCGAAGTAGCACCCGGGCCTTTGATGCCGAAGTCGTTCAGGTT > NB501016:282:H2V7GAFX2:1:21102:18040:18404/1‑151 (MQ=60)
AGCGGCCTTGTGTCGTGATAGGGCCGCAAAGCGGCCCCCTCGGTTTTCAGCTGGCAGAAATTACTTCTGCTTCACACCTTCGACACTGATATCCAGGTCCAGGGTCTGCGAAGTAGCACCCGGGCCTTTGATGCCGAAGTCGTTCAGGTTC < NB501016:282:H2V7GAFX2:4:11402:17053:9205/151‑1 (MQ=60)
AGCGGCCTTGTGTCGTGATAGGGCCGCAAAGCGGCCCCCTCGGTTTTCAGCTGGCAGAAATTACTTCTGCTTCACACCTTCGACACTGATATCCAGGTCCAGGGTCTGCGAAGTAGCACCCGGGCCTTTGATGCCGAAGTCGTTCAGGTT > NB501016:282:H2V7GAFX2:4:11502:19993:10786/1‑150 (MQ=60)
GGGCCTTGTGTCGTGATAGGGCCGCAAAGCGGCCCCCTCGGTTTTCAGCTGGCAGAAATTACTTCTGCTTCACACCTTCGACACTGATATCCAGGTCCAGGGTCTGCGAAGTAGCACCCGGGCCTTTGATGCCGAAGTCGTTCAGGTTCAG < NB501016:282:H2V7GAFX2:2:21311:10769:16895/151‑1 (MQ=60)
ATAGGGCCGCAAAGCGGCCCCCTCGGTTTTCAGCTGGCAGAAATTACTTCTGCTTCACACCTTCGACACTGATATCCAGGTCCAGGGTCTGCGAAGTAGCACCCGGGCCTTTGATGCCGAAGTCGTTCAGGTTCAGCGTGGTGGTGGCGTT < NB501016:282:H2V7GAFX2:1:11203:13783:17215/151‑1 (MQ=60)
ATAGGGCCGCAAAGCGGCCCCCTCGGTTTTCAGCTGGCAGAAATTACTTCTGCTTCACACCTTCGACACTGATATCCAGGTCCAGGGTCTGCGAAGTAGCACCCGGGCCTTCGATGCCGAAGTCGTTCAGGTTCAGCGTGGTGGTGGCGTT < NB501016:282:H2V7GAFX2:1:21109:24311:3169/151‑1 (MQ=60)
AGGGCCGCAAAGCGGCCCCCTCGGTTTTCAGCTGGCAGAATTTACTTCTGCTTCACACCTTCGACACTGATATCCAGGTCCAGGGTCTGCGAAGTAGCACCCGGGCCTTTGATGCCGAAGTCGTTCAGGTTCAGCGTGGTGGTGGCGTTG > NB501016:282:H2V7GAFX2:2:21307:15344:5994/1‑150 (MQ=60)
GCCGCAAAGCGGCCCCCTCGGTTTTCAGCTGGCAGAAATTACTTCTGCTTCACACCTTCGACACTGATATCCAGGTCCAGGGTCTGCGAAGTAGCACCCGGGCCTTTGATGCCGAAGT > NB501016:282:H2V7GAFX2:2:21304:23162:7332/1‑118 (MQ=60)
CGCAAAGCGGCCCCCTCGGTTTTCAGCTGGCACAAATTACTTCTGCTTCACACCATCGACACTGATATCAAGGTCCAGGGTCTGCGAAGTAGCACCCGGGCCTTTGATGCCGAAGTCGTTCAGGTTCAGCGTGGTGGTGGCGTAGAAGCC > NB501016:282:H2V7GAFX2:2:21109:7111:12754/1‑150 (MQ=60)
AAAGCGGCCCCCTCGGTTTTCAGCTGGCAGAAATTACTTCTGCTTCACACCTTCGACACTGATATCCAGGTCCAGGGTCTGCGAAGTAGCACCCGGGCCTTTGATGCCGAAGTCGTTCAGGTTCAGCGTGGTGGTGGCGTTGAAGCCAGCG > NB501016:282:H2V7GAFX2:2:11304:13137:20079/1‑151 (MQ=60)
GCCCCCTCGGTTTTCAGCTGGCAGAAATTACTTCTGCTTCACACCTTCGACACTGATATCCAGGTCCAGGGTCTGCGAAGTAGCACCCGGGCCTTTGATGCCGAAGTCGTTCAGGTTCAGCGTGGTGGTGGCGTTGAAGCCAGCGCGCTCG > NB501016:282:H2V7GAFX2:2:11104:4924:16090/1‑151 (MQ=60)
|
CGCTGCTGACCCGCAAGGGCTGATAGAAGTACCGAGGGGGCTGCTTCGCAGCCCTATCACGACACAAGGCCGCTCCTGCAGAGAATTTCTTGATCTCTACAGGAGCGGCCTTGTGTCGTGATAGGGCCGCAAAGC‑GCGCCCTCGGTTTTCAGCTGGCAGAAATTACTTCTGCTTCACACCTTCGACACTGATATCCAGGTCCAGGGTCTGCGAAGTAGCACCCGGGCCTTTGATGCCGAAGTCGTTCAGGTTCAGCGTGGTGGTGGCGTTGAAGCCAGCGCGCTCG > NC_002947_CJ‑RC/5677431‑5677716
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 0 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
