Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A1 F79 I1 R1
|
61 |
81.5 |
3485072 |
98.6% |
3436280 |
145.0 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| RA |
NC_002947_CJ‑RC |
4,889,319 |
Δ1 bp |
coding (675/1776 nt) |
gcl → |
glyoxylate carboligase |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NC_002947_CJ‑RC | 4,889,318 | 0 | A | . | 100.0%
| 277.9
/ NA
| 60 | coding (674/1776 nt) | gcl | glyoxylate carboligase |
| Reads supporting (aligned to +/- strand): ref base A (0/0); new base . (28/32); total (28/32) |
GACGCCTACGAACCGCTGCCCGTGCACAAACCGTCCGCCACACGCGTACAGGCCGAAAAAGCCCTGGCCCTGCTCAATGACGCCGAGCGCCCACTGCTGGTAGCCGGTGGCGGCATCATCAACGCCGACGCCAGTGACAAGCTGGTCGAATTCGCCGAACTGACCGGCGTACCCGTGATCCCGACCCTGATGGGCTGGGGCACCATCCCGGACGACCACGCACAGATGGTCGGCATGGTCGGCCTGCAGACCTCGCACCGCTATGGCAACGCAACCCTGCTGAAATCCGACC > NC_002947_CJ‑RC/4889170‑4889461
|
gACGCCTACGAACCGCTGCCCGTGCACAAACCGTCCGCCACACGCGTACAGGCCGAAAAAGCCCTGGCCCTGCTCAATGACGCCGAGCGCCCACTGCTGGTAGCCGGTGGCGGCATCATCAACGCCGACGCCAGTGACAAGCTGGTCGa < 1:10993/149‑1 (MQ=255)
cGCCTACGAACCGCTGCCCGTGCACAAACCGTCCGCCACACGCGTACAGGCCGAAAAAGCCCTGGCCCTGCTCAATGACGCCGAGCGCCCACTGCTGGTAGCCGGTGGCGGCATCATCAACGCCGACGCCAGTGACAAGCTGGTCGatt < 8:170535/149‑3 (MQ=255)
ccTACGAACCGCTGCCCGTGCACAAACCGTCCGCCACACGCGTACAGGCCGAAAAAGCCCTGGCCCTGCTCAATGACGCCGAGCGCCCACTGCTGGTAGCCGGTGGCGGCATCATCAACGCCGACGCCAGTGACAAGCTGGTCGattcg < 8:269095/149‑5 (MQ=255)
cTACGAACCGCTGCCCGTGCACAAACCGTCCGCCACACGCGTACAGGCCGAAAAAGCCCTGGCCCTGCTCAATGACGCCGAGCGCCCACTGCTGGTAGCCGGTGGCGGCATCATCAACGCCGACGCCAGTGACAAGCTGGTCG‑ATTCGc > 5:123208/1‑149 (MQ=255)
cGAACCGCTGCCCGTGCACAACCCGTCCGCCACACGCGTACAGGCCGAAAAAGCCCTGGCCCTGCTCAATGACGCCGAGCGCCCACTGCTGGTAGCCGGTGGCGGCATCATCAACGCCGACGCCAGTGACAAGCTGGTCG‑ATTCGcc < 1:338317/147‑1 (MQ=255)
gAACCGCTGGCCTTGCACAAACCGTCCGCCACACGCGTACAGGCCGAAAAAGCCCTGGCCCTGCTCAATGACGCCGAGCGACCACTGCAGGTAGCCGGTGGCGGCATCATCAACGCCTACGCCAGTGACAAGCTGGTCG‑ATTCGCCGaa < 8:258622/149‑1 (MQ=255)
gAACCGCTGCCCGTGCACAAACCGTCCGCCACACGCGTACAGGCCGAAAAAGCCCTGGCCCTGCTCAATGACGCCGAGCGCCCACTGCTGGTAGCCGGTGGCGGCATCATCAACGCCGACGCCAGTGACAAGCTGGTCG‑ATTCGCCGaa < 6:126210/149‑1 (MQ=255)
aCCGCTGCCCGTGCACAAACCGTCCGCCACACGCGTACAGGCCGAAAAAGCCCTGGCCCTGCTCAATGACGCCGAGCGCCCACTGCTGGTAGCCGGTGGCGGCATCATCAACGCCGACGCCAGTGACAAGCTGGTCG‑ATTCGCCGAACt > 7:217585/1‑149 (MQ=255)
cccGTGCACAAACCGTCCGCCACACGCGTACGGGCCGAAAAAGCCCTGGCCCTGCTCAATGACGCCGAGCGCCCACTGCTGGTAGCCGGTGGCGGCATCATCAACGCCGACGCCAGTGACAAGCTGGTCG‑ATTCGCCGAACTGACCg < 8:157722/147‑1 (MQ=255)
cccGTGCACAAACCGTCCGCCACACGCGTACAGGCCGAAAAAGCCCTGGCCCTGCTCAATGACGCCGAGCGCCCACTGCTGGTAGCCGGTGGCGGCATCATCAACGCCGACGCCAGTGACAAGCTGGTCG‑ATTCGCCGAACTGACCGGc > 5:423490/1‑149 (MQ=255)
cccGTGCACAAACCGTCCGCCACACGCGTACAAGCCGAAAAAGCCCTGGCCCTGCTCAATGACGCCGAGCGCCCACTGCTGGTAGCCGGTGGCGGCATCATCAACGCCGACGCCAGTGACAAGCTGGTCG‑ATTCGCCGAACTGACCGGc > 2:291853/1‑149 (MQ=255)
tGCACAAACCGTCCGCCACACGCGTACAGGCCGAAAAAGCCCTGGCCCTGCTCAATGACGCCGAGCGCCCACTGCTGGTAGCCGGTGGCGGCATCATCAACGCCGACGCCAGTGACAAGCTGGTCG‑ATTCGCCGAACTGACCGGCGTAc < 6:26919/149‑1 (MQ=255)
cacaAACCGTCCGCCACACGCGTACAGGCCGAAAAAGCCCTGGCCCTGCTCAATGACGCCGAGCGCCCACTGCTGGTAGCCGGTGGCGGCATCATCAACGCCGACGCCAGTGACAAGCTGGTCGattc < 5:27279/128‑4 (MQ=255)
cacaAACCGTCCGCCACACGCGTACAGGCCGAAAAAGCCCTGGCCCTGCTCAATGACGCCGAGCGCCCACTGCTGGTAGCCGGTGGCGGCATCATCAACGCCGACGCCAGTGACAAGCTGGTCGattc > 6:27279/1‑125 (MQ=255)
cacaAACCGTCCGCCACACGCGTACAGGCCGAAAAAGCCCTGGCCCTGCTCAATGACGCCGAGCGCCCACTGCTGGTAGCCGGTGGCGGCATCATCAACGCCGACGCCAGTGACAAGCTGGTCG‑ATTCGCCGAACTGACCGGCGTAccc > 5:303732/1‑149 (MQ=255)
cacaAACCGTCCGCCACACGCGTACAGGCCGAAAAAGCCCTGGCCCTGCTCAATGACGCCGACCGCCCACTGCTGGTAGCCGGTGGCGGCATCAACAACGCCGACGCCAGTGACAAGCTGGTCG‑ATTCGCAGAACTGACCGGCGTAccc > 4:39442/1‑149 (MQ=255)
acaAACCGTCCGCCACACGCGTACAGGCCGAAAAAGCCCTGGCCCTGCTCAATGACGCCGAGCGCCCACTGCTGGTAGCCGGTGGCGGCATCATCAACGCCGACGCCAGTGACAAGCTGGTCGattc < 2:314862/127‑4 (MQ=255)
acaAACCGTCCGCCACACGCGTACAGGCCGAAAAAGCCCTGGCCCTGCTCAATGACGCCGAGCGCCCACTGCTGGTAGCCGGTGGCGGCATCATCAACGCCGACGCCAGTGACAAGCTGGTCGattc > 1:314862/1‑124 (MQ=255)
acaAACCGTCCGCCACACGCGTACAGGCCGAAAAAGCCCTGGCCCTGCTCAATGACGCCGAGCGCCCACTGCTGGTAGCCGGTGGCGGCATCATCAACGCCGACGCCAGTGACAAGCTGGTCG‑ATTCGCCGAACTGACCGGCGTACCCg > 3:395957/1‑149 (MQ=255)
aaaCCGTCCGCCACACGCGTACAGGCCGAAAAAGCCCTGGCCCTGCTCAATGACGCCGAGCGCCCACTGCTGGTAGCCGGTGGCGTCATCATCAACGCCGACGCCAGTGACAAGCTGGTCG‑ATTCGCCGAACTGACCGGCGTACCCGTg < 7:264898/149‑1 (MQ=255)
aaaCCGTCCGCCACACGCGTACAGGCCGAAAAAGCCCTGGCCCTGCTCAATGACGCCGAGCGCCCACTGCTGGTAGCCGGTGGCGGCATCATCAACGCCGACGCCAGTGACAAGCTGGTCG‑ATTCGCCGAACTGACCGGCGTACCCGt > 1:197943/1‑148 (MQ=255)
aaCCGTCCGCCACACGCGTACAGGCCGAAAAAGCCCTGGCCCTGCTCAATGACGCCGAGCGCCCACTGCTGGTAGCCGGTGGCGGCATCATCAACGCCGACGCCAGTGACAAGCTGGTCG‑ATTCGCCGAACTGACCGGCGTACCCGTGa < 8:374829/149‑1 (MQ=255)
ccGTCCGCCACACGCGTACAGGCCGAAAAAGCCCTGGCCCTGCTCAATGACGCCGAGCGCCCACTGCTGGTAGCCGGTGGCGGCATCATCAACGCCGACGCCAGTGACAAGCTGGTCG‑ATTCGCCGAACTGACCGGCGTACCCGTGATc < 4:347984/149‑1 (MQ=255)
gTCCGCCACACGCGTACAGGCCGAAAAAGCCCTGGCCCTGCTCAATGACGCCGAGCGCCCACTGCTGGTAGCCGGTGGCGGCATCATCAACGCCGACGCCAGTGACAAGCTGGTCG‑ATTCGCCGAACTGACCGGCGTACCCGTGATccc > 2:144932/1‑149 (MQ=255)
acGCGTACAGGCCGAAAAAGCCCTGGCCCTGCTCAATGACGCCGAGCGCCCACTGCTGGTAGCCGGTGGCGGCATCATCAACGCCGACGCCAGTGACAAGCTGGTCG‑ATTCGCCGAACTGACCGGCGTACCCGTGATCCCGACCCTGAt > 8:184995/1‑149 (MQ=255)
acGCGTACAGGCCGAAAAAGCCCTGGCCCTGCTCAATGACGCCGAGCGCCCACTGCTGGTAGCCGGTGGCGGCATCATCAACGCCGACGCCAGTGACAAGCTGGTCG‑ATTCGCCGAACTGACCGGCGTACCCGTGATCCCGACCCTGAt < 6:301271/149‑1 (MQ=255)
cAGGCCGAAAAAGCCCTGGCCCTGCTCAATGACGCCGAGCGCCCACTGCTGGTAGCCGGTGGCGGCATCATCAACGCCGACGCCAGTGACAAGCTGGTCG‑ATTCGCCGAACTGACCGGCGTACCCGTGATCCCGACCCTGATGGGCTg < 3:27362/148‑1 (MQ=255)
aGGCCGAAAAAGCCCTGGCCCTGCTCAATGACGCCGAGCGCCCACTGCTGGTAGCCGGTGGCGGCATCATCAACGCCGACGCCAGTGACAAGCTGGTCG‑ATTCGCCGAACTGACCGGCGTACCCGTGATCCCGACCCTGATGGGCTggg < 8:217585/149‑1 (MQ=255)
aGGCCGAAAAAGCCCTGGCCCTGCTCAATGACGCCGAGCGCCCACTGCTGGTAGCCGGTGGCGGCATCATCAACGCCGACGCCAGTGACAAGCTGGTCG‑ATTCGCCGAACTGACCGGCGTACCCGTGATCCCGACCCTGATGGGCTggg < 4:371283/149‑1 (MQ=255)
ccGAAAAAGCCCTGGCCCTGCTCAATGACGCCGAGCGCCCACTGCTGGTAGCCGGTGGCGGCATCATCAACGCCGACGCCAGTGACAAGCTGGTCG‑ATTCGCCGAACTGACCGGCGTACCCGTGATCCCGACCCTGATGGGCTGGGGCa < 1:22857/149‑1 (MQ=255)
cGAAAAAGCCCTGGCCCTGCTCAATGACGCCGAGCGCCCACTGCTGGTAGCCGGTGGCGGCATCATCAACGCCGACGCCAGTGACAAGCTGGTCG‑ATTCGCCGAACTGACCGGCGTACCCGTGATCCCGACCCTGATGGGCTGGGGCAc > 6:189627/1‑149 (MQ=255)
aaaaGCCCTGGCCCTGCTCAATGACGCCGAGCGCCCACTGCTGGTAGCCGGTGGCGGCATCATCAACGCCGACGCCAGTGACAAGCTGGTCG‑ATTCGCCGAACTGACCGGCGTACCCGTGATCCCGACCCTGATGGGCTGGGGCACCAt > 7:326975/1‑149 (MQ=255)
aaaGCCCTGGCCCTGCTCAATGACGCCGAGCGCCCACTGCTGGTAGCCGGTGGCGGCATCATCAACGCCGACGCCAGTGACAAGCTGGTCG‑ATTCGCCGAACTGACCGGCGTACCCGTGATCCCGACCCTGATGGGCTGGGGCACCATc < 3:208732/149‑1 (MQ=255)
aaGCCCTGGCCCTGCTCAATGACGCCGAGCGCCCACTGCTGGTAGCCGGTGGCGGCATCATCAACGCCGACGCCAGTGACAAGCTGGTCG‑ATTCGCCGAACTGACCGGCGTACCCGTGATCCCGACCCTGATGGGCTGGGGCACCATcc > 6:103153/1‑149 (MQ=255)
aGCCCTGGCCCTGCTCAATGACGCCGAGCGCCCACTGCTGGTAGCCGGTGGCGGCATCATCAACGCCGACGCCAGTGACAAGCTGGTCG‑ATTCGCCGAACTGACCGGCGTACCCGTGATCCCGACCCTGATGGGCTGGGGCACCATccc > 6:357871/1‑149 (MQ=255)
ctggccctgCTCAATGACGCCGAGCGCCCACTGCTGGTAGCCGGTGGCGGCATCATCAACGCCGACGCCAGTGACAAGCTGGTCG‑ATTCGCCGAACTGACCGGCGTACCCGTGATCCCGACCCTGATGGGCTGGGGCACCATCCCGgac < 1:35793/149‑1 (MQ=255)
ctggccctgCTCAATGACGCCGAGCGCCCACTGCTGGTAGCCGGTGGCGGCATCATCAACGCCGACGCCAGTGACAAGCTGGTCG‑ATTCGCCGAACTGACCGGCGTACCCGTGATCCCGACCCTGATGGGCTGGGGCACCATCCCGgac < 1:291853/149‑1 (MQ=255)
ctggccctgCTCAATGACGCCGAGCGCCCACTGCTGGTAGCCGGTGGCGGCATCATCAACGCCGACGCCAGTGACAAGCTGGTCG‑ATTCGCCGAACTGACCGGCGTACCCGTGATCCCGACCCTGATGGGCTGGGGCACCATCCCGgac < 3:318752/149‑1 (MQ=255)
ctggccctgCTCAATGACGCCGAGCGCCCACTGCTGGTAGCCGGTGGCGGCATCATCAACGCCGACGCCAGTGACAAGCTGGTCG‑ATTCGCCGAACTGACCGGCGTACCCGTGATCCCGACCCTGATGGGCTGGGGCACCATCCCGgac < 2:197943/149‑1 (MQ=255)
ctggccctgCTCAATGACGCCGAGCGCCCACTGCTGGTAGCCGGTGGCGGCATCATCAACGCCGACGCCAGTGACAAGCTGGTCG‑ATTCGCCGAACTGACCGGCGTACCCGTGATCCCGACCCTGATGGGCTGGGGCACCATCCCGgac > 2:432683/1‑149 (MQ=255)
gccctgCTCAATGACGCCGAGCGCCCACTGCTGGTAGCCGGTGGCGGCATCATCAACGCCGACGCCAGTGACAAGCTGGTCG‑ATTCGCCGAACTGACCGGCGTACCCGTGATCCCGACCCTGATGGGCTGGGGCACCATCCCGgacgac < 6:396344/149‑1 (MQ=255)
cctgCTCAATGACGCCGAGCGCCCACTGCTGGTAGCCGGTGGCGGCATCATCAACGCCGACGCCAGTGACAAGCTGGTCG‑ATTCGCCGAACTGACCGGCGTACCCGTGATCCCGACCCTGATGGGCTGGGGCACCATCCCGGACGACCa > 8:404116/1‑149 (MQ=255)
ctgCTCAATGACGCCGAGCGCCCACTGCTGGTAGCCGGTGGCGGCATCATCAACGCCGACGCCAGTGACAAGCTGGTCG‑ATTCGCCGAACTGACCGGCGTACCCGTGATCCCGACCCTGATGGGCTGGGGCACCATCCCGGACGACCAc < 8:326975/149‑1 (MQ=255)
ctgCTCAATGACGCCGAGCGCCCACTGCTGGTAGCCGGTGGCGGCATCATCAACGCCGACGCCAGTGACAAGCTGGTCG‑ATTCGCCGAACTGACCGGCGTACCCGTGATCCCGACCCTGATGGGCTGGGGCACCATCCCGGACGACCAc < 6:423490/149‑1 (MQ=255)
aaTGACGCCGAGCGCCCACTGCTGGTAGCCGGTGGCGGCATCATCAACGCCGACGCCAGTGACAAGCTGGTCG‑ATTCGCCGAACTGACCGGCGTACCCGTGATCCCGACCCTGATGGGCTGGGGCACCATCCCGGACGACCACGCACAg < 5:103153/149‑1 (MQ=255)
tGACGCCGAGCGCCCACTGCTGGTAGCCGGTGGCGGCATCATCAACGCCGACGCCAGTGACAAGCTGGTCG‑ATTCGCCGAACTGACCGGCGTACCCGTGATCCCGACCCTGATGGGCTGGGGCACCATCCCGGACGACCACGCACAGat < 7:184995/149‑1 (MQ=255)
gCCGAGCGCCCACTGCTGGTAGCCGGTGGCGGCATCATCAACGCCGACGCCAGTGACAAGCTGGTCG‑ATTCGCCGAACTGACCGGCGTACCCGTGATCCCGACCCTGATGGGCTGGGGCACCATCCCGGACGACCACGCACAGatggtc < 1:144932/149‑1 (MQ=255)
gCCGAGCGCCCACTGCTGGTAGCCGGTGGCGGCATCATCAACGCCGACGCCAGTGACAAGCTGGTCG‑ATTCGCCGAACTGACCGGCGTACCCGTGATCCCGACCCTGATGGGCTGGGGCACCATCCCGGACGACCACGCACAGatggtc > 7:277754/1‑149 (MQ=255)
cGAGCGCCCACTGCTGGTAGCCGGTGGCGGCATCATCAACGCCGACGCCAGTGACAAGCTGGTCG‑ATTCGCCGAACTGACCGGCGTACCCGTGATCCCGACCCTGATGGGCTGGGGCACCATCCCGGACGACCACGca < 6:278123/138‑1 (MQ=255)
cGAGCGCCCACTGCTGGTAGCCGGTGGCGGCATCATCAACGCCGACGCCAGTGACAAGCTGGTCG‑ATTCGCCGAACTGACCGGCGTACCCGTGATCCCGACCCTGATGGGCTGGGGCACCATCCCGGACGACCACGca > 5:278123/1‑138 (MQ=255)
aGCGCCCACTGCTGGTAGCCGGTGGCGGCATCATCAACGCCGACGCCAGTGACAAGCTGGTCG‑ATTCGCCGAACTGACCGGCGTACCCGTGATCCCGACCCTGATGGGCTGGGGCACCATCCCGGACGACCACGCACAGatggtcggca < 3:218912/149‑1 (MQ=255)
gcCCACTGCTGGTAGCCGGTGGCGGCATCATCAACGCCGACGCCAGTGACAAGCTGGTCG‑ATTCGCCGAACTGACCGGCGTACCCGTGATCCCGACCCTGATGGGCTGGGGCACCATCCCGGACGACCACGCACAGatg > 4:364788/1‑139 (MQ=255)
gcCCACTGCTGGTAGCCGGTGGCGGCATCATCAACGCCGACGCCAGTGACAAGCTGGTCG‑ATTCGCCGAACTGACCGGCGTACCCGTGATCCCGACCCTGATGGGCTGGGGCACCATCCCGGACGACCACGCACAGatg < 3:364788/139‑1 (MQ=255)
gTAGCCGGTGGCGGCATCATCAACGCCGACGCCAGTGACAAGCTGGTCG‑ATTCGCCGAACTGACCGGCGTACCCGTGATCCCGACCCTGATGGGCTGGGGCACCATCCCGGACGACCACGCACAGATGGTCGGCATGGTCGGCCTGCa < 4:17213/148‑1 (MQ=255)
cGGTGGCGGCATCATCAACGCCGACGCCAGTGACAAGCTGGTCG‑ATTCGCCGAACTGACCGGCGTACCCGTGATCCCGACCCTGATGGGCTGGGGCACCATCCCGGACGACCACGCACAGATGGTCGGCATGGTCGGCCTGCAGACCTc > 2:204364/1‑149 (MQ=255)
gcggcATCATCAACGCCGACGCCAGTGACAAGCTGGTCG‑ATTCGCCGAACTGACCGGCGTACCCGTGATCCCGACCCTGATGGGCTGGGGCACCATCCCGGACGACCACGCACAGATGGTCGGCATGGTCGGCCTGCAGAc > 1:178040/1‑141 (MQ=255)
gcggcATCATCAACGCCGACGCCAGTGACAAGCTGGTCG‑ATTCGCCGAACTGACCGGCGTACCCGTGATCCCGACCCTGATGGGCTGGGGCACCATCCCGGACGACCACGCACAGATGGTCGGCATGGTCGGCCTGCAGAc < 2:178040/141‑1 (MQ=255)
atcaACGCCGACGCCAGTGACAAGCTGGTCG‑ATTCGCCGAACTGACCGGCGTACCCGTGATCCCGACCCTGATGGGCTGGGGCACCATCCCGGACGACCACGCACAGATGGTCGGCATGGTCGGCCTGCAGACCTCGCACCGCTATgg > 8:120342/1‑148 (MQ=255)
tcaACGCCGACGCCAGTGACAAGCTGGTCG‑ATTCGCCGAACTGACCGGCGTACCCGTGATCCCGACCCTGATGGGCTGGGGCACCATCCCGGACGACCACGCACAGATGGTCGGCATGGTCGGCCTGCAGACCTCGCACCGCTATGgc > 5:263362/1‑148 (MQ=255)
tcaACGCCGACGCCAGTGACAAGCTGGTCG‑ATTCGCCGAACTGACCGGCGTACCCGTGATCCCGACCCTGATGGGCTGGGGCACCATCCCGGACGACCACGCACAGATGGTCGGCATGGTCGGCCTGCAGACCTCGCACCGCTATGgc > 6:96043/1‑148 (MQ=255)
aCGCCGACGCCAGTGACAAGCTGGTCG‑ATTCGCCGAACTGACCGGCGTACCCGTGATCCCGACCCTGATGGGCTGGGGCACCATCCCGGACGACCACGCACAGATGGTCGGCATGGTCGGCCTGCAGACCTCGCACCGCTATGgcaacg > 4:196028/1‑149 (MQ=255)
gCCGACGCCAGTGACAAGCTGGTCG‑ATTCGCCGAACTGACCGGCGTACCCGTGATCCCGACCCTGATGGGCTGGGGCACCATCCCGGACGACCACGCACAGATGGTCGGCATGGTCGGCCTGCAGACCTCGCACCGCTATGgcaacgc > 3:266167/1‑148 (MQ=255)
aCGCCAGTGACAAGCTGGTCG‑ATTCGCCGAACTGACCGGCGTACCCGTGATCCCGACCCTGATGGGCTGGGGCACCATCCCGGACGACCACGCACAGATGGTCGGCATGGTCGGCCTGCAGACCTCGCACCGCTATGGCAACGCAAccc < 7:404116/149‑1 (MQ=255)
cAGTGACAAGCTGGTCG‑ATTCGCCGAACTGACCGGCGTACCCGTGATCCCGACCCTGATGGGCTGGGGCACCATCCCGGACGACCACGCACAGATGGTCGGCATGGTCGGCCTGCAGACCTCGCACCGCTATGGCAACGCAACCctgct < 6:303732/149‑1 (MQ=255)
tGACAAGCTGGTCG‑ATTCGCCGAACTGACCGGCGTACCCGTGATCCCGACCCTGATGGGCTGGGGCACCATCCCGGACGACCACGCACAGATGGTCGGCATGGTCGGCCTGCAGACCTCGCACCGCTATGGCAACGCAACCCTGCTGa > 3:141051/1‑148 (MQ=255)
aCAAGCTGGTCG‑ATTCGCCGAACTGACCGGCGTACCCGTGATCCCGACCCTGATGGGCTGGGGCACCATCCCGGACGACCACGCACAGATGGTCGGCATGGTCGGCCTGCAGACCTCGCACCGCTATGGCAACGCAACCCTGCTGaaa < 5:189627/148‑1 (MQ=255)
tGGTCG‑ATTCGCCGAACTGACCGGCGTACCCGTGATCCCGACCCTGATGGGCTGGGGCACCATCCCGGACGACCACGCACAGATGGTCGGCATGGTCGGCCTGCAGACCTCGCACCGCTATGGCAACGCAACCCTGCTGAAATCCGAcc > 3:158543/1‑149 (MQ=255)
|
GACGCCTACGAACCGCTGCCCGTGCACAAACCGTCCGCCACACGCGTACAGGCCGAAAAAGCCCTGGCCCTGCTCAATGACGCCGAGCGCCCACTGCTGGTAGCCGGTGGCGGCATCATCAACGCCGACGCCAGTGACAAGCTGGTCGAATTCGCCGAACTGACCGGCGTACCCGTGATCCCGACCCTGATGGGCTGGGGCACCATCCCGGACGACCACGCACAGATGGTCGGCATGGTCGGCCTGCAGACCTCGCACCGCTATGGCAACGCAACCCTGCTGAAATCCGACC > NC_002947_CJ‑RC/4889170‑4889461
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
BRESEQ :: bam2aln output
CGACGCCTACGAACCGCTGCCCGTGCACAAACCGTCCGCCACACGCGTACAGGCCGAAAAAGCCCTGGCCCTGCTCAATGACGCCGAGCGCCCACTGCTGGTAGCCGGTGGCGGCATCATCAACGCCGACGCCAGTGACAAGCTGGTCGAATTCGCCGAACTGACCGGCGTACCCGTGATCCCGACCCTGATGGGCTGGGGCACCATCCCGGACGACCACGCACAGATGGTCGGCATGGTCGGCCTGCAGACCTCGCACCGCTATGGCAACGCAACCCTGCTGAAATCCGACCTGGTGTTC > NC_002947_CJ‑RC/4889169‑4889469
|
CGACGCCTACGAACCGCTGCCCGTGCACAAACCGTCCGCCACACGCGTACAGGCCGAAAAAGCCCTGGCCCTGCTCAATGACGCCGAGCGCCCACTGCTGGTAGCCGGTGGCGGCATCATCAACGCCGACGCCAGTGACAAGCTGGTCGAT < NB501016:282:H2V7GAFX2:1:11102:4063:16034/151‑1 (MQ=60)
CCTACGAACCGCTGCCCGTGCACAAACCGTCCGCCACACGCGTACAGGCCGAAAAAGCCCTGGCCCTGCTCAATGACGCCGAGCGCCCACTGCTGGTAGCCGGTGGCGGCATCATCAACGCCGACGCCAGTGACAAGCTGGTCG‑ATTCGCC > NB501016:282:H2V7GAFX2:3:11509:11524:1934/1‑151 (MQ=60)
ACGAACCGCTGCCCGTGCACAACCCGTCCGCCACACGCGTACAGGCCGAAAAAGCCCTGGCCCTGCTCAATGACGCCGAGCGCCCACTGCTGGTAGCCGGTGGCGGCATCATCAACGCCGACGCCAGTGACAAGCTGGTCG‑ATTCGCCG < NB501016:282:H2V7GAFX2:1:21208:25053:2043/149‑1 (MQ=60)
AACCGCTGCCCGTGCACAAACCGTCCGCCACACGCGTACAGGCCGAAAAAGCCCTGGCCCTGCTCAATGACGCCGAGCGCCCACTGCTGGTAGCCGGTGGCGGCATCATCAACGCCGACGCCAGTGACAAGCTGGTCG‑ATTCGCCGAACTG > NB501016:282:H2V7GAFX2:4:11612:7145:1057/1‑151 (MQ=60)
GCCCGTGCACAAACCGTCCGCCACACGCGTACAGGCCGAAAAAGCCCTGGCCCTGCTCAATGACGCCGAGCGCCCACTGCTGGTAGCCGGTGGCGGCATCATCAACGCCGACGCCAGTGACAAGCTGGTCG‑ATTCGCCGAACTGACCGGCG > NB501016:282:H2V7GAFX2:3:21610:14405:3956/1‑151 (MQ=60)
GCACAAACCGTCCGCCACACGCGTACAGGCCGAAAAAGCCCTGGCCCTGCTCAATGACGCCGAGCGCCCACTGCTGGTAGCCGGTGGCGGCATCATCAACGCCGACGCCAGTGACAAGCTGGTCG‑ATTCG < NB501016:282:H2V7GAFX2:3:11405:17831:9640/130‑1 (MQ=60)
GCACAAACCGTCCGCCACACGCGTACAGGCCGAAAAAGCCCTGGCCCTGCTCAATGACGCCGAGCGCCCACTGCTGGTAGCCGGTGGCGGCATCATCAACGCCGACGCCAGTGACAAGCTGGTCG‑ATTAGCCGAACTGACCGGCGTACCCG > NB501016:282:H2V7GAFX2:3:21502:24636:13347/1‑151 (MQ=60)
CACAAACCGTCCGCCACACGCGTACAGGCCGAAAAAGCCCTGGCCCTGCTCAATGACGCCGAGCGCCCACTGCTGGTAGCCGGTGGCGGCATCATCAACGCCGACGCCAGTGACAAGCTGGTCG‑ATTCGCCGAACTGACCGGCGTACCCGT > NB501016:282:H2V7GAFX2:2:21309:6958:9487/1‑151 (MQ=60)
CACAAACCGTCCGCCACACGCGTACAGGCCGAAAAAGCCCTGGCCCTGCTCAATGACGCCGAGCGCCCACTGCTGGTAGCCGGTGGCGGCATCATCAACGCCGACGCCAGTGACAAGCTGGTCG‑ATTCG > NB501016:282:H2V7GAFX2:1:21204:1789:3369/1‑129 (MQ=60)
CAAACCGTCCGCCACACGCGTACAGGCCGAAAAAGCCCTGGCCCTGCTCAATGACGCCGAGCGCCCACTGCTGGTAGCCGGTGGCGTCATCATCAACGCCGACGCCAGTGACAAGCTGGTCG‑ATTCGCCGAACTGACCGGCGTACCCGTGA < NB501016:282:H2V7GAFX2:4:21407:21552:7986/151‑1 (MQ=60)
CAAACCGTCCGCCACACGCGTACAGGCCGAAAAAGCCCTGGCCCTGCTCAATGACGCCGAGCGCCCACTGCTGGTAGCCGGTGGCGGCATCATCAACGCCGACGCCAGTGACAAGCTGGTCG‑ATTCGCCGAACTGACCGGCGTACCCGTG > NB501016:282:H2V7GAFX2:1:11309:6341:1438/1‑150 (MQ=60)
ACAGGCCGAAAAAGCCCTGGCCCTGCTCAATGACGCCGAGCGCCCACTGCTGGTAGCCGGTGGCGGCATCATCAACGCCGACGCCAGTGACAAGCTGGTCG‑ATTCGCCGAACTGACCGGCGTACCCGTGATCCCGACCCTGATGGGCTGG < NB501016:282:H2V7GAFX2:2:11105:4462:13511/150‑1 (MQ=60)
GCCGAAAAAGCCCTGGCCCTGCTCAATGACGCCGAGCGCCCACTGCTGGTAGCCGGTGGCGGCATCATCAACGCCGACGCCAGTGACAAGCTGGTCG‑ATTCGCCGAACTGACCGGCGTACCCGTGATCCCGACCCTGATGGGCTGGGGCAC < NB501016:282:H2V7GAFX2:1:11104:17253:13331/151‑1 (MQ=60)
AAAAAGCCCTGGCCCTGCTCAATGACGCCGAGCGCCCACTGCTGGTAGCCGGTGGCGGCATCATCAACGCCGACGCCAGTGACAAGCTGGTCG‑ATTCGCCGAACTGACCGGCGTACCCGTGATCCCGACCCTGATGGGCTGGGGCACCATC > NB501016:282:H2V7GAFX2:4:21504:6374:18188/1‑151 (MQ=60)
AAAAGCCCTGGCCCTGCTCAATGACGCCGAGCGCCCACTGCTGGTAGCCGGTGGCGGCATCATCAACGCCGACGCCAGTGACAAGCTGGTCG‑ATTCGCCGAACTGACCGGCGTACCCGTGATCCCGACCCTGATGGGCTGGGGCACCATCC < NB501016:282:H2V7GAFX2:2:11311:23538:9103/151‑1 (MQ=60)
CCTGGCCCTGCTCAATGACGCCGAGCGCCCACTGCTGGTAGCCGGTGGCGGCATCATCAACGCCGACGCCAGTGACAAGCTGGTCG‑ATTCGCCGAACTGACCGGCGTACCCGTGATCCCGACCCTGATGGGCTGGGGCACCATCCCGGACG < NB501016:282:H2V7GAFX2:2:21208:8254:4431/151‑1 (MQ=60)
CCTGGCCCTGCTCAATGACGCCGAGCGCCCACTGCTGGTAGCCGGTGGCGGCATCATCAACGCCGACGCCAGTGACAAGCTGGTCG‑ATTCGCCGAACTGACCGGCGTACCCGTGATCCCGACCCTGATGGGCTGGGGCACCATCCCGGACG < NB501016:282:H2V7GAFX2:1:11106:2930:13265/151‑1 (MQ=60)
CCTGGCCCTGCTCAATGACGCCGAGCGCCCACTGCAGGTAGCCGGTGGCGGCATCATCAACGCCGACGCCAGTGACAAGCTGGTCG‑ATTCGCCGAACTGACCGGCGTACCCGTGATCCCGACCCTGATGGGCTGGGGCACCATCCCGGACG < NB501016:282:H2V7GAFX2:1:21112:2004:7097/151‑1 (MQ=60)
CAATGACGCCGAGCGCCCACTGCTGGTAGCCGGTGGCGGCATCATCAACGCCGACGCCAGTGACAAGCTGGTCG‑ATTCGCCGAACTGACCGGCGTACCCGTGATCCCGACCCTGATGGGCTGGGGCACCATCCCGGACGACCACGCACAGA < NB501016:282:H2V7GAFX2:3:11505:12295:17137/151‑1 (MQ=60)
ATGACGCCGAGCGCCCACTGCTGGTAGCCGGTGGCGGCATCATCAACGCCGACGCCAGTGACAAGCTGGTCG‑ATTCGCCGAACTGACCGGCGTACCCGTGATCCCGACCCTGATGGGCTGGGGCACCATCCCGGACGACCACGCACAGATG < NB501016:282:H2V7GAFX2:4:11606:12333:12560/151‑1 (MQ=60)
CGCCGAGCGCCCACTGCTGGTAGCCGGTGGCGGCATCATCAACGCCGACGCCAGTGACAAGCTGGTCG‑ATTCGCCGAACTGACCGGCGTACCCGTGATCCCGACCCTGATGGGCTGGGGCACCATCCCGGACGACCACGCACAGATGGTCG > NB501016:282:H2V7GAFX2:4:21409:17874:6673/1‑151 (MQ=60)
CGCCGAGCGCCCACTGCTGGTAGCCGGTGGCGGCATCATCAACGCCGACGCCAGTGACAAGCTGGTCG‑ATTCGCCGAACTGACCGGCGTACCCGTGATCCCGACCCTGATGGGCTGGGGCACCATCCCGGACGACCACGCACAGATGGTCG < NB501016:282:H2V7GAFX2:1:11212:10976:3422/151‑1 (MQ=60)
CCGAGCGCCCACTGCTGGTAGCCGGTGGCGGCATCATCAACGCCGACGCCAGTGACAAGCTGGTCG‑ATTCGCCGAACTGACCGGCGTACCCGTGATCCCGACCCTGATGGGCTGGGGCACCATCCCGGACGACCACGCAC > NB501016:282:H2V7GAFX2:3:21410:19228:8396/1‑140 (MQ=60)
GAGCGCCCACTGCTGGTAGCCGGTGGCGGCATCATCAACGCCGACGCCAGTGACAAGCTGGTCG‑ATTCGCCGAACTGACCGGCGTACCCGTGATCCCGACCCTGATGGGCTGGGGCACCATCCCGGACGACCACGCACAGATGGTCGGCAT < NB501016:282:H2V7GAFX2:2:21101:21991:3724/151‑1 (MQ=60)
CGCCCACTGCTGGTAGCCGGTGGCGGCATCATCAACGCCGACGCCAGTGACAAGCTGGTCG‑ATTCGCCGAACTGACCGGCGTACCCGTGATCCCGACCCTGATGGGCTGGGGCACCATCCCGGACGACCACGCACAGATGG < NB501016:282:H2V7GAFX2:2:21304:21637:7689/141‑1 (MQ=60)
GCTGGTAGCCGGTGGCGGCATCATCAACGCCGACGCCAGTGACAAGCTGGTCG‑ATTCGCCGAACTGACCGGCGTACCCGTGATCCCGACCCTGATGGGCTGGGGCACCATCCCGGACGCCCACGCACAGATGGTCGGCTTGGTCGGCCTGG > NB501016:282:H2V7GAFX2:3:21607:22739:8242/1‑151 (MQ=60)
GGCGGCATCATCAACGCCGACGCCAGTGACAAGCTGGTCG‑ATTCGCCGAACTGACCGGCGTACCCGTGATCCCGACCCTGATGGGCTGGGGCACCATCCCGGACGACCACGCACAGATGGTCGGCATGGTCGGCCTGCAGACC > NB501016:282:H2V7GAFX2:1:11305:11914:11721/1‑143 (MQ=60)
ATCAACGCCGACGCCAGTGACAAGCTGGTCG‑ATTCGCCGAACTGACCGGCGTACCCGTGATCCCGACCCTGATGGGCTGGGGCACCATCCCGGACGACCACGCACAGATGGTCGGCATGGTCGGCCTGCAGACCTCGCACCGCTATGGCA > NB501016:282:H2V7GAFX2:3:21407:16591:18903/1‑150 (MQ=60)
CGCCGACGCCAGTGACAAGCTGGTCG‑ATTCGCCGAACTGACCGGCGTACCCGTGATCCCGACCCTGATGGGCTGGGGCACCATCCCGGACGACCACGCACAGATGGTCGGCATGGTCGGCCTGCAGACCTCGCACCGCTATGGCAACGCA > NB501016:282:H2V7GAFX2:2:21109:10306:9490/1‑150 (MQ=60)
GACGCCAGTGACAAGCTGGTCG‑ATTCGCCGAACTGACCGGCGTACCCGTGATCCCGACCCTGATGGGCTGGGGCACCATCCCGGACGACCACGCACAGATGGTCGGCATGGTCGGCCTGCAGACCTCGCACCGCTATGGCAACGCAACCCT < NB501016:282:H2V7GAFX2:4:21605:9441:6512/151‑1 (MQ=60)
GTGACAAGCTGGTCG‑ATTCGCCGAACTGACCGGCGTACCCGTGATCCCGACCCTGATGGGCTGGGGCACCATCCCGGACGACCACGCACAGATGGTCGGCATGGTCGGCCTGCAGACCTCGCACCGCTATGGCAACGCAACCCTGCTGAA > NB501016:282:H2V7GAFX2:2:11212:20583:10880/1‑150 (MQ=60)
GACAAGCTGGTCG‑ATTCGCCGAACTGACCGGCGTACCCGTGATCCCGACCCTGATGGGCTGGGGCACCATCCCGGACGACCACGCACAGATGGTCGGCATGGTCGGCCTGCAGACCTCGCACCGCTATGGCAACGCAACCCTGCTGAAAT < NB501016:282:H2V7GAFX2:3:11607:9379:13700/150‑1 (MQ=60)
CTGGTCG‑ATTCGCCGAACTGACCGGCGTACCCGTGATCCCGACCCTGATGGGCTGGGGCACCATCCCGGACGACCACGCACAGATGGTCGGCATGGTCGGCCTGCAGACCTCGCACCGCTATGGCAACGCAACCCTGCTGAAATCCGACCT > NB501016:282:H2V7GAFX2:2:11303:5808:7378/1‑151 (MQ=60)
GTCG‑ATTCGCCGAACTGACCGGCGTACCCGTGATCCCGACCCTGATGGGCTGGGGCACCATCCCGGACGACCACGCACAGATGGTCGGCATGGTCGGCCTGCAGACCTCGCACCGCTATGGCAACGCAACCCTGCTGAAATCCGACCTGGT > NB501016:282:H2V7GAFX2:1:11309:12140:8910/1‑151 (MQ=60)
ATTCGCCGAACTGACCGGCGTACCCGTGATCCCGACCCTGATGGGCTGGGGCACCATCCCGGACGACCACGCACAGATGGTCGGCATGGTCGGCCTGCAGACCTCGCACCGCTATGGCAACGCAACCCTGCTGAAATCCGACCTGGTGTTC < NB501016:282:H2V7GAFX2:2:21312:12932:10870/151‑1 (MQ=60)
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CGACGCCTACGAACCGCTGCCCGTGCACAAACCGTCCGCCACACGCGTACAGGCCGAAAAAGCCCTGGCCCTGCTCAATGACGCCGAGCGCCCACTGCTGGTAGCCGGTGGCGGCATCATCAACGCCGACGCCAGTGACAAGCTGGTCGAATTCGCCGAACTGACCGGCGTACCCGTGATCCCGACCCTGATGGGCTGGGGCACCATCCCGGACGACCACGCACAGATGGTCGGCATGGTCGGCCTGCAGACCTCGCACCGCTATGGCAACGCAACCCTGCTGAAATCCGACCTGGTGTTC > NC_002947_CJ‑RC/4889169‑4889469
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| Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 0 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
