Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A2 F22 I1 R1
|
55 |
83.2 |
3548070 |
98.1% |
3480656 |
146.5 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| JC |
NC_002947_CJ‑RC |
4,982,288 |
+GGC |
intergenic (‑24/+44) |
PP_4387 ← / ← flgE |
hypothetical protein/flagellar hook protein FlgE |
|
| |
seq id |
position |
reads (cov) |
reads (cov) |
score |
skew |
freq |
annotation |
gene |
product |
| * |
? |
NC_002947_CJ‑RC |
= 4982288 | 5 (0.060) | 56 (0.700)
+GGC |
49/286 |
0.9 |
92.0% |
intergenic (‑24/+44) |
PP_4387/flgE |
hypothetical protein/flagellar hook protein FlgE |
| ? | NC_002947_CJ‑RC |
4982289 = |
5 (0.060) | intergenic (‑25/+43) |
PP_4387/flgE |
hypothetical protein/flagellar hook protein FlgE |
GAACACAGGTAGCGGCCGGTGACCAGGCTTTGCCATTGATAGAACGGGGCGGGGGCAGCGGGGGCAGGCAGAACCAGCACCAGCAAGGGGAACAAGGCCAGTAACGACAGCCGCTTCATTCGCGTGAACCTTCACATTCTTGG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_002947_CJ‑RC/4982146‑4982288
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑CGCTTTG‑CGGCCCCAATTACAAACACCAAAGCCAATACAATCATCAGGTCATCTGAATGATGGTCTGCATGATGGTGCTTTCAGTGGAAATGGTCTTGGCATTGGCCTGGTAGTTGCTCTGCGCCTTGATCAGGTTTACCAGCTCGCC > NC_002947_CJ‑RC/4982289‑4982436
|||
GAACACAGGTTGCGGCCGGTGACCAGGCTTTGCCATTGATAGATCGGGGCGGGGGCAGCGGGGGCAGGCAGAACCAGCACCAGCAAGGGGAACAAGGCCAGTAACGACAGCCGCTTCATTCGCGTGAACCTTCACATTCTTGGGGCCGC < 1:395331/149‑1
ACACAGGTAGCGGCCGGTGACCAGGCTTTGCCATTGATAGAACGGGGCGGGGGCAGCGGGGGCAGGCAGAACCAGCACCAGCAAGGGGAACAAGGCCAGTAACGACAGCCGCTTCATTCGCGTGAACCTTCACATTCTTGGGGCCGCgt > 4:254029/1‑147
ctGGTCGCGGCCGGTGACCTGGCTTTGCAATTGATAGTCCGGGGCGGGGGCTGCGGGGGCAGGCAGAACCAGCACCAGCAAGGGGAACAAGGCCAGTAACGACAGCCGCTTCATTCGCGTGAACCTTCACATTCTTGGGGCCGCTTTG‑C < 8:62567/147‑1
TAGCGGCCGGTGACCAGGCTTTGCCATTGATAGAACGGGGCGGGGGCAGCGGGGGCAGGCAGAACCAGCACCAGCAAGGGGAACAAGGCCAGTAACGACAGCCGCTTCATTCGCGTGAACCTTCACATTCTTGGGGCCGCTTTG‑CGGCC > 1:75548/1‑149
TAGCGGCCGGTGACCAGGCTTTGCCATTGATAGAACGGGGCGGGGGCAGCGGGGGCAGGCAGAACCAGCACCAGCAAGGGGAACAAGGCCAGTAACGACAGCCGCTTCATTCGCGTGAACCTTCACATTCTTGGGGCCGCTTTG‑CGGCC < 5:103516/149‑1
CCGGTGACCAGGCTTTGCCATTGATAGAACGGGGCGGGGGCAGCGGGGGCAGGCAGAACCAGCACCAGCAAGGGGAACAAGGCCAGTAACGACAGCCGCTTCATTCGCGTGAACCTTCACATTCTTGGGGCCGCTTTG‑CGGCCCCAATT < 7:200646/149‑1
CGGTGACCAGGCTTTGCCATTGATAGAACGGGGCGGGGGCAGCGGGGGCAGGCAGAACCAGCACCAGCAAGGGGAACAAGGCCAGTAACGACAGCCGCTTCATTCGCGTGAACCTTCACATTCTTGGGGCCGCTTTG‑CGGGCACAAat > 8:401385/1‑146
TGACCAGGCATTGCCATTGATAGAACGGGGCGGGGGCAGCGGCGGCAGGCAGAACCAGCACCAGCAAGGGGAACAAGGCCAGTAACGACAGCCGCTTCATACGCGTGACCCTTCACATACTTGGGGCCGCATTG‑CGGCCCCAAATAaa > 8:184237/1‑146
ACCAGGCTTTGCCATTGATAGAACGGGGCGGGGGCAGCGGGGGCAGGCAGAACCAGCACCAGCAAGGGGAACAAGGCCAGTAACGACAGCCGCTTCATTCGCGTGAACCTTCACATTCTTGGGGCCGCTTTG‑CGGCCCCAATTACAAA < 6:405492/148‑1
catGCTTTGCCATTGATAGAACGGGGCGGGGGCAGCGGGGGCAGGCAGAACCAGCACCAGCAAGGGGAACAAGGCCAGTAACGACAGCCGCTTCATTCGCGTGAACCTTCACATTCTTGGGGCCGCTTTG‑GGGCCCCAATTAAAAACA > 7:430238/4‑148
CAGGCTTTGCCATTGATCGACCGGGGCGGGGGCTGCGGGGGCAGGCAGAACCAGCACCAGCAAGGGGAACAAGGCCAGTAACGACAGCCGCTTCATTCGCGTGAACCTTCACATTCTTGGGGCCGCTTTG‑CGGCCCCAATTACAAACAC < 6:441398/149‑1
CAGGCTTTGCCATTGATAGAACGGGGCGGGGGCAGCGGGGGCAGGCAGAACCAGCACCAGCAAGGGGAACAAGGCCAGTAACGACAGCCGCTTCATTCGCGTGAACCTTCACATTCTTGGGGCCGCTTTG‑CGGCCCCAATTACAAACAC < 6:119888/149‑1
CCATTGATAGAACGGGGCGGGGGCAGCGGGGGCAGGCAGAACCAGCACCAGCAAGGGGAACAAGGCCAGTAACGACAGCCGCTTCATTCGCGTGAACCTTCACATTCTTGGGGCCGCTTTG‑CGGCCTCAATTACAAACACCAAAGCCA > 2:377423/1‑148
CCATTGATAGAACGGGGCGGGGGCAGCGGGGGCAGGCAGAACCAGCACCAGCAAGGGGAACAAGGCCAGTAACGACAGCCGCTTCATTCGCGTGAACCTTCACATTCTTGGGGCCGCTTTG‑CGGCCCCAATTACAAACACCAAAGCCA > 1:230628/1‑148
ATTGATAGAACGGGGCGGGGGCAGCGGGGGCAGGCAGAACCAGCACCAGCAAGGGGAACAAGGCCAGTAACGACAGCCGCTTCATTCGCGTGAACCTTCACATTCTTGGGGGCCCGTTGAGGGCCCCAATTA‑AAACCCCAAAGCCAgaa > 6:263276/1‑146
TTGATAGAACGGGGCGGGGGCAGCGGGGGCAGGCAGAACCAGCACCAGCAAGGGGAACAAGGCCAGTAACGACAGCCGCTTCATTCGCGTGAACCTTCACATTCTTGGGGCCGCGTTG‑GGGGCCCAATTACAAACACCAAAGCCAATA > 6:71736/1‑148
GATAGAACGGGGCGGGGGCAGCGGGGGCAGGCAGAACCAGCACCAGCAAGGGGAACAAGGCCAGTAACGACAGCCGCTTCATTCGCGTGAACCTTCACATTCTTGGGGGCGCTTTG‑GGGGCCCCATTAAAAACACCAAAGCCAATAAAA > 1:171819/1‑149
TAGAACGGGGCGGGGGCAGCGGGGGCAGGCAGAACCAGCACCAGCAAGGGGAACAAGGCCAGTAACGACAGCCGCTTCATTCGCGTGAACCTTCACATTCTTGGGGCCGCTTTG‑CGGCCCCAATTACAAACACCAAAGCCAATACAATC < 5:324734/149‑1
TAGAACGGGGCGGGGGCAGCGGGGGCAGGCAGAACCAGCACCAGCAAGGGGAACAAGGCCAGTAACGACAGCCGCTTCATTCGCGTGAACCTTCACATTCTTGGGGCCGCTTTG‑CGGCCCCAATTAAAAAAACCAAAGCCAATAAAAT > 7:201485/1‑148
AACGGGGCGGGGGCAGCGGGGGCAGGCAGAACCAGCACCAGCAAGGGGAACAAGGCCAGTAACGACAGCCGCTTCATTCGCGTGAACCTTCTCATTCTTGGGGCCGCTTTG‑CGGCCCCAATTACAAACACCAAAGCCAATACAATCAT > 5:424872/1‑148
GGGCGGGGGCAGCGGGGGCAGGCAGAACCAGCACCAGCAAGGGGAACAAGGCCAGTAACGACAGCCGCTTCATTCGCGTGAACCTTCACATTCTTGGGGCCGGTTTG‑GGGCCCCAATTTCAAAAACCAAAACCAATACAATCATCAGGT > 6:50842/1‑149
GGCGGGGGCAGCGGGGGCAGGCAGAACCAGCACCAGCAAGGGGAACAAGGCCAGTAACGACAGCCGCTTCATTCGCGTGAACCTTCACATTCTTGGGGCCGCTTTG‑CGGCCCCAATTACAAACACCAAAGCCAATACAATCATCAGGTC < 3:424768/149‑1
GGCAGCGGGGGCAGGCAGAACCAGCACCAGCAAGGGGAACAAGGCCAGTAACGACAGCCGCTTCATTCGCGTGAACCTTCACATTCTTGGGGCCGCTTTG‑CGGCCCCAATTACAAACACCAAAGCCAATACAATCATCAGGTCATCTGA < 7:425765/149‑1
GCAGCGGGGGCAGGCAGAACCAGCACCAGCAAGGGGAACAAGGCCAGTAACGACAGCCGCTTTATTCGCGTGAACCTTCACATTCTTGGGGCCGCTTTG‑CGGCCCCAATTACAAACACCAAAGCCAATACAATCATCAGGTCATCTGAA < 7:28234/149‑1
CAGCGGGGGCAGGCAGAACCAGCACCAGCAAGGGGAACAAGGCCTGTAACGACAGCCGCTTCATTCGCGTGAACCTTCACATTCTTGGGGCCGCTTTG‑CGGCCCCAATTACAAACACCAAAGCCAATACAATCATCAGGTCATCTGAAT < 5:262253/149‑1
GGGGGCAGGCAGAACCAGCACCAGCAAGGGGAACAAGGCCAGTAACGACAGCCGCTTCATTCGCGTGAACCTTCACATTCTTGGGGCCGCTTTG‑CGGCCCCAATTACAAACACCAAAGCCAATACAATCATCAGGTCATCTGAATGATG < 3:395409/149‑1
GGGCAGGCAGAACCAGCACCAGCAAGGGGAACAAGGCCAGTAACGACAGCCGCTTCATTCGCGTGAACCTTCACATTCTTGGGGCCGCTTTG‑CGGCCCCAATTACAAACACCAAAGCCAATACAATCATCAGGTCATCTGAATGATGGT < 2:230628/149‑1
GCAGAACCAGCACCAGCAAGGGGAACAAGGCCAGTAACGACAGCCGCTTCATTCGCGTGAACCTTCACATTCTTGGGGCCGCGTTG‑CGGCCCCAATTACAAACACCAAAGCCAATACAATAATCAGGTCATCTGAATGATGGTGTGGAT > 8:272209/1‑149
AACCAGCACCAGCAAGGTGAACAAGGCCAGTAACGACAGCCGCTTCATTCGCGTGAACCTTCTCATTCTTGGGGCCTCTTTG‑CGGCCCCAATTACAAACACCAAAGCCAATACAATCATCAGGTCATCTGAATTATGGTCTGCATGATG < 5:31542/149‑1
AGCACCAGCAAGGGGAACAAGGCCAGTAACGACAGCCGCTTCATTCGCGTGAACCTTCACATTCTTGGGGCCGCTTTG‑CGGCCCCAAATAAAAACACCAAAGCCAAAACAATCAAAAAGTCAACTGAATTATTGTCTGGATGATGGTGC > 8:301784/1‑149
ACCAGCAAGGGGAACAAGGCCAGTAACGACAGCCGCTTCATTCGCGTGAACCTTCACATTCTTGGGGGCGCCTTG‑GGGCCCCAATTAAAAACACCAAAGCCAAAAAAAACAACAGGGGATCAGAATGATGGTGTGGATGATGGTGGTTT > 4:107030/1‑149
CCAGCAAGGGTAACAAGGCCAGTAACGACAGCCGCTTCATTCGCGTGAACCTTCACATTCTTGGGGCAGCTTTG‑CGGCCCCAATTACAAACACCAAAGCCAATACAATCATCAGGTCATCTGAATGATGGTCTGCATGATGGTGCTTTC < 2:35124/149‑1
GCAAGGGGAACAAGGCCAGTAACGACAGCCGCTTCATTCGCGTGAACCTTCACATTCTTGGGGCCGCTTTG‑CGGCCCCAATTACAAACACCAAAGCCAATACAATCATCAGGTCATCTGAATGATGGTCTGCATGATGGTGCTTTCAGT < 5:134896/149‑1
CAAGGCCAGTAACGACAGCCGCTTCATTCGCGTGAACCTTCACATTCTTGGGGCCGCTTTG‑CGGCCCCAATTACAAACACCAAAGCCAATACAATCATCAGGTCATCTGAATGATGGTCTGCATGATGGTGCTTTCAGTGGAAATGGTC < 1:76953/149‑1
AGGCCAGTAACGACAGCCGCTTCATTCGCGTGAACCTTCACATTCTTGGGGCCGCGTTG‑GGGCCCCAAATAAAAACACCAAAGCCAATAAAAAAATAAGGTGATATGAATGATGGTGTGGATGATGGTGCTTTGAGTGGAAATTGTCTT > 4:300532/1‑149
AGGCCACTAACGACAGCCGCTTCAATCGCGAGAACCTTCACATTCTTGGGGCCGCTTTG‑CGGCCCCAATTACAAACACCACAGCCAATACAATCATCAGGTCATCTGAATGATGGTCTGCATGATGGTGCTTTCAGTGGAAATGGTCTT < 4:25697/149‑1
GGCCAGTAACGACAGCCGCTTCATTCGCGTGAACCTTCACATTCTTGGGGCCGCTTTG‑CGGCCCCAATTACAAACACCAAAGCCAATACAATCATCAGGTCATCTGAATGATGGTCTGCATGATGGTGCTTTCAGTGGAAATGGTCTTG < 3:300532/149‑1
GGCCAGTAACGACAGCCGCTTCATTCGCGTGAACCTTCACATTCTTGGGGCCGCTTTG‑CGGCCCCAATTACAAACACCAAAGCCAATACAATCATCAGGTCATCTGAATGATGGTCTGCATGATGGTGCTTTCAGTGGAAATGGTCTTG < 5:385971/149‑1
CAGTAACGACAGCCGCTTCATTCGCGTGAACCTTCACATTCTAGGGGCCGCTTTG‑CGGCCCCAATTACAAACACCAAAGCCAATACAATCATCAGGTCATCTGAAGGATGGTATGCATGATGGTGCTTTCAGAGGAAATGGTCTTGGCA > 4:292016/1‑149
TAACGACAGCGGCTTCATTCGCGTGAACCTTCACATTCTTGGGGCCGCTTTG‑CGGCCCCAATTACAAACACCAAAGCCAATACAATCTTCAGGTCTTCTGAATGATGGTCTGCATGTTGGTGCTTTCAGTGGAAATGGTCTTGGCATTG < 3:349020/149‑1
ACGACAGCCGCTTCATTCGCGTGAACCTTCACATTCTTGGGGCCGCTTTG‑CGGCCCCAATTACAAACACCAAAGCGAATACAATCTTCAGGTCATCTGAATGATGGTCTGCATGA < 3:182324/115‑1
CGACAGCCGCTTCATTCGCGTGAACCTTCACATTCTTGGGGCCGCTTTG‑CGGCCCCAATTACAAACACCAAAGCCAAAAAAAAAATCACGTAATCTGAAATATGGTCTGCATGATTGTGCATTGAGAGGAAATGGTCTTGGCATTGGC > 6:400151/1‑148
GACAGCCGCTTCATTCGCTTGAACCTTCACATTCTTGGGGCAGCTTTG‑CGGCCCCAATTACAAACACCAAAGCCAATACAATCATCAGGTCATCTGAATGATGGTCTGCATGATGGTGCTTTCAGTGGAAATGGTCTTGGCATTGGCCT < 6:54629/149‑1
ACAGCCGCTTCATTCGCGTGAACCTTCTCATTCTTGGGGCCGCTTTG‑CGGCCCCAATTACAAACACCAAAGCCAATACAATCATCAGGTCATCTGAATGATGGTCTGCATGATGGTGCTTTCAGTGGAAATGGTCTTGGCATTGGGCTG < 6:424872/149‑1
CAGCCGCTTCATTCGCGTGAACCTTCACATTCTTGGGGCCGCTTTG‑CGGCCCCAATTACAAACACCAAAGCCAATACAATCATCAGGTCATCTGAATGATGGTCTGCATGATGGTGCTTTCAGTGGAAATGGTCTTGGCATTGGCCTGG < 3:116679/149‑1
AGCCGCTTCATTCGCGTGAACCTTCACATTCTTGGGGCCGCTTTG‑CGGCCCCAATTACAAACACCAAAGCCAATACAATCATCAGGTCATCTGAATGATGGTCTGCATGATGGTGCTTTCAGTGGAAATGGTCTTGGCATTGGCCTGGT < 2:171819/149‑1
CCGCTTCATTCGCGTGAACCTTCACATTCTTGGGGCCGCTTTG‑CGGCCCCAATTACAAACACCAAAGCCAATACAATCATCAGGGCATCTGAATGATGGTCTGCATGATGGTGCTTTCAGTGGAAATGGTCTTGGCATTGGCCTG < 1:276930/145‑1
CCGATTCTTTCGCGTGAACCTTGTCATTCTTGGGGCCGCTTTG‑CTGCCCCAATTACAAACACCAAAGCAAATACAATCATCAGGTCATCTGAATGATGGTCTGCATGATGGTGCTTTCAGTGGAAATGGTCTTGGCATTGGCCTGGTA < 2:419162/148‑1
TTCGCGTGAACCTTCACATTCTTGGGGCCGCGTTG‑CGGCCCCAAATACAAACACCCAAGCCAATACAATCATAAGGTGATCTGAATTATGGTCTGCAAGATGGTGCTTTAAGTGGTAATGGTCTTTGCCTTGGCCTGGTAGTTGCTCTG > 6:154121/1‑149
CGTGAACCTTCACATTCTTGGGGCCGCTTTG‑CGGCCCCAATTACAAACACCAAAGCCAATACAATCATCAGGTCATCTGAATGATGGTCTGCATGATGGTGCTTTCAGAGGAAATGGTCTTGGCATTGGCCTGGTAGTTGCTCTGCGCC < 5:71736/149‑1
CTTCACATTCTTGGGGCCGCTTTG‑CGGCCTCAATTACAAACACCAAAGCCAATACAATCATCAGGTCATCTGAATGATGGTCTGCATGATGGTGCTTTCAGTGGAAATGGTCTTGGCATTGGCCTGGTAGTTGCTCTGCGCCTTGATCA < 1:377423/149‑1
aACATTCTTGGGGCCGCTTTG‑CGGCCCAAATTACAAACACCAAAGCCAATAAAATCATAATGTAATCTGAATGATGGTCTGCATGATGTTGCTTTCAGTGGAAATTGTCTTGTCATTGGCCTGGTAGTTGCTCTGCGCCTTGATCAG < 8:430238/146‑1
CACATTCTTGGGGCCGCTTTG‑CGGCCCCAATTACAAACACCATAGCCAATACAATCATCAGGTCATCTGAATGATGGTCTGCATGATGGTGCTTTCAGTGGAAATGGTCTTGGCATTGGCCTGGTAGTTGCTCTGCGCCTTGATCAG < 7:283849/147‑1
CACATTCTTGGGGCCGCTTTG‑CGGCCCCAATTACAAACACCAAAGCCAATACAATCATCAGGTCATCTGAATGATGGTCTGCATGATGGTGCTTTCAGTGGAAATGGTCTTGGCATTGGCCTGGTAGTTGCTCTGCGCCTTGATCAG < 1:346586/147‑1
TTGGGGCCGCAAAG‑CGGCCCCAATTACAAACACCAAAGCCAATACAATCATCAGGTCATCTGAATGATGGTCTGCATGATGGTGCTTTCAGTGGAAATGGTCTTGGCATTGGCCTGGTAGTTGCTCTGCGCCTTGATCAGGTTTACCAG > 5:85326/1‑149
GGGGCCGCTTTG‑CGGCCCCAATTACAAACACCAAAGCCAATACAATCATCAGGTCATCTGAATGATGGTCTGCATGATGGTGCTTTCAGTGGAAATGGTCTTGGCATTGGCCTGGTAGTTGCTCTGCGCCTTGATCAGGTTTACCA < 2:75548/146‑1
GGCCGCTTTG‑CGGCCCCAATTACAAACACCAAAGCCAATACAATCATCAGGTCATCTGAATGATGGTCTGCATGATGGTGCTTTCAGTGGAAATGGTCTTGGCATTGGCCTGGTAGTTGCTCTGCGCCTTGATCAGGTTTACCAGCTCG > 2:79924/1‑149
CCGCTTTG‑CGGCCCAAATTACAAACACCAAAGCCAATACAATCATCAGGTCATCTGAATGATGGTCTGCATGATGGTGCTTTCAGTGGAAATGGTCTTGGCATTGGCCTGGTAGTTGCTCTGCGCCTTGATCAGGTTTACCAGCTCGCC < 1:241081/149‑1
|||
GAACACAGGTAGCGGCCGGTGACCAGGCTTTGCCATTGATAGAACGGGGCGGGGGCAGCGGGGGCAGGCAGAACCAGCACCAGCAAGGGGAACAAGGCCAGTAACGACAGCCGCTTCATTCGCGTGAACCTTCACATTCTTGG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_002947_CJ‑RC/4982146‑4982288
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑CGCTTTG‑CGGCCCCAATTACAAACACCAAAGCCAATACAATCATCAGGTCATCTGAATGATGGTCTGCATGATGGTGCTTTCAGTGGAAATGGTCTTGGCATTGGCCTGGTAGTTGCTCTGCGCCTTGATCAGGTTTACCAGCTCGCC > NC_002947_CJ‑RC/4982289‑4982436
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
|---|
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |
GATK/CNVnator alignment
BRESEQ :: bam2aln output
CGAACACAGGTAGCGGCCGGTGACCAGGCTTTGCCATTGATAGAACGGGGCGGGGGCAGCGGGGGCAGGCAGAACCAGCACCAGCAAGGGGAACAAGGCCAGTAACGACAGCCGCTTCATTCGCGTGAACCTTCACATTCTT‑‑‑GG‑‑‑CGC‑‑‑‑TTTGCGGCCCCAATTACAAACACCAAAGCCAATACAATCATCAGGTCATCTGAATGATGGTCTGCATGATGGTGCTTTCAGTGGAAATGGTCTTGGCATTGGCCTGGTAGTTGCTCTGCGCCTTGATCAGGTTTACCAGCTCGCCG > NC_002947_CJ‑RC/4982145‑4982437
|
CGAACACAGGTTGCGGCCGGTGACCAGGCTTTGCCTTTGATAGATCGGGGCGGGGGCAGCGGGGGCAGGCAGAACCAGCACCAGCAAGGGGAACAAGGCCAGTAACGACAGCCGCTTCATTCGCGTGAACCTTCACATTCTT‑‑‑GGggccgct < NB501016:282:H2V7GAFX2:1:21304:17147:18359/151‑8 (MQ=60)
ggtcgcggccgggtcCCAGGCTTTGCCATTGATCGACCGGGGCGGGGGCAGCGGGGGCAGGCAGAACCAGCACCAGCAAGGGGAACAAGGCCAGTAACGACAGCCGCTTCATTCGCGTGAACCTTCACATTCTT‑‑‑GGGGCCGC‑‑‑‑TTTGCGGCC < NB501016:282:H2V7GAFX2:2:11105:2532:1401/136‑1 (MQ=60)
GTCGCGGCCGGTGACCAGGCTTTGCCATTGATAGAACGGGGCGGGGGCAGCGGGGGCAGGCAGAACCAGCACCAGCAAGGGGAACAAGGCCAGTAACGACAGCCGCTTCATTCGCGTGAACCTTCACATTCTT‑‑‑GGGGCCGC‑‑‑‑TTTGCGGCCC < NB501016:282:H2V7GAFX2:3:11505:17891:13060/151‑1 (MQ=60)
GTAGCGGCCGGTGACCAGGCTTTGCCATTGATAGAACGGGGCGGGGGCAGCGGGGGCAGGCAGAACCAGCACCAGCAAGGGGAACAAGGCCAGTAACGACAGCCGCTTCATTCGCGTGAACCTTCACATTCTT‑‑‑GGGGCCGC‑‑‑‑TTTGCGGCCC > NB501016:282:H2V7GAFX2:1:11112:9686:10026/1‑151 (MQ=60)
GCCGGTGACCAGGCTTTGCCATTGATAGAACGGGGCGGGGGCAGCGGGGGCAGGCAGAACCAGCACCAGCAAGGGGAACAAGGCCAGTAACGACAGCCGCTTCATTCGCGTGAACCTTCACATTCTT‑‑‑GGGGCCGC‑‑‑‑TTTGCGGCCCCAATTA < NB501016:282:H2V7GAFX2:4:11608:23183:13687/151‑1 (MQ=60)
CCGGTGACCAGGCTTTGCCATTGATAGAAAGGGGCGGGGGCAGCGGGGGCAGGCAGAACCAGCACCAGCAAGGGGAACAAGGCCAGTAACGACAGCCGCTTCATTCGCGTGAACCTTCACATTCTT‑‑‑GGggccgcgtttcggcgaccatta > NB501016:282:H2V7GAFX2:2:11207:23066:4547/1‑128 (MQ=60)
CCATGCTTTGCCATTGATAGAACGGGGCGGGGGCAGCGGGGGCAGGCAGAACCAGCACCAGCAAGGGGAACAAGGCCAGTAACGACAGCCGCTTCATTCGCGTGAACCTTCACATTCTT‑‑‑GGGGCCGC‑‑‑‑TTTGGGGCCCCAATTAAAAACAC > NB501016:282:H2V7GAFX2:4:21608:25254:18121/1‑150 (MQ=60)
cctatcattgaatcacCGGGGGGGGGGCAGCGGGGGCACGCAGAACCAGCACCAGCAAGGGGAACAAGGCCAGTAACGACAGCCGCTTCATTCGCGTGAACCTTCACATTCTT‑‑‑GGGGCCGC‑‑‑‑TTTGCGGCCCCAATTACAAACACCAAAGCC < NB501016:282:H2V7GAFX2:3:21406:8257:19619/135‑1 (MQ=60)
GCCATTGATAGAACGGGGCGGGGGCAGCGGGGGCAGGCAGAACCAGCACCAGCAAGGGGAACAAGGCCAGTAACGACAGCCGCTTCATTCGCGTGAACCTTCACATTCTT‑‑‑GGGGCCGC‑‑‑‑TTTGCGGCCCCAAATTCAAACACCAAAGCCAA > NB501016:282:H2V7GAFX2:1:21101:12721:12578/1‑150 (MQ=60)
TGATAGAACGGGGCGGGGGCAGCGGGGGCAGGCAGAACCAGCACCAGCAAGGGGAACAAGGCCAGTAACGACAGCCGCTTCATTCGCGTGAACCTTCACATTCTTGGGGG‑‑‑CGC‑‑‑‑TTTGGGGGCCCCATTAAAAACACCAAAGCCAATAAAAT > NB501016:282:H2V7GAFX2:1:11303:14033:16507/1‑151 (MQ=60)
ATAGAACGGGGCGGGGGCAGCGGGGGCAGGCAGAACCAGCACCAGCAAGGGGAACAAGGCCAGTAACGACAGCCGCTTCATTCGCGTGAACCTTCACATTCTT‑‑‑GGGGCCGC‑‑‑‑TTTGCGGCCCCAATTACAAACACCAAAGCCAATACAATCA < NB501016:282:H2V7GAFX2:3:21505:17074:5548/151‑1 (MQ=60)
ATAGAACGGGGCGGGGGCAGCGGGGGCAGGCAGAACCAGCACCAGCAAGGGGAACAAGGCCAGTAACGACAGCCGCTTCATTCGCGTGAACCTTCACATTCTT‑‑‑GGGGCCGC‑‑‑‑TTTGCGGCCCCAATTAAAAAAACCAAAGCCAATAaaata > NB501016:282:H2V7GAFX2:4:11608:11759:16352/1‑145 (MQ=60)
GAACGGGGCGGGGGCAGCGGGGGCAGGCAGAACCAGCACCAGCAAGGGGAACAAGGCCAGTAACGACAGCCGCTTCATTCGCGTGAACCTTCTCATTCTT‑‑‑GGGGCCGC‑‑‑‑TTTGCGGCCCCAATTACAAACACCAAAGCCAATACAATCATC > NB501016:282:H2V7GAFX2:3:21609:16670:2489/1‑150 (MQ=60)
GAACGGGGCGGGGGCAGCGGGGGCAGGCAGAACCAGCACCAGCAAGGGGAACAAGGCCAGTAACGACAGCCGCTTCATTCGCGTGAACCTTCACATTCTT‑‑‑GGggccgcaattggggcccaagtagaaaaaccaaaaacaaaaaaaaaaac > NB501016:282:H2V7GAFX2:3:11403:8656:15055/1‑102 (MQ=60)
GGGCGGGGCCCGCGGGGGCAGGCAGAACCAGCACCAGCAAGGGGAACAAGGCCAGTAACGACAGCCGCTTCATTCGCGTGAACCTTCACATTCTT‑‑‑GGGGCCGC‑‑‑‑TTTGCGGCCCCAATTACAAACACCAAAGCCAATACAATCATCAGGTCA < NB501016:282:H2V7GAFX2:2:21312:11020:8968/151‑1 (MQ=60)
GGGCAGCGGGGGCAGGCAGAACCAGCACCAGCAAGGGGAACAAGGCCAGTAACGACAGCCGCTTCATTCGCGTGAACCTTCACATTCTT‑‑‑GGGGCCGC‑‑‑‑TTTGCGGCCCCAATTACAAACACCAAAGCCAATACAATCATCAGGTCATCTGAA < NB501016:282:H2V7GAFX2:4:21608:15029:4193/151‑1 (MQ=60)
GGCAGCGGGGGCAGGCAGAACCAGCACCAGCAAGGGGAACAAGGCCAGTAACGACAGCCGCTTTATTCGCGTGAACCTTCACATTCTT‑‑‑GGGGCCGC‑‑‑‑TTTGCGGCCCCAATTACAAACACCAAAGCCAATACAATCATCAGGTCATCTGAAT < NB501016:282:H2V7GAFX2:4:11405:23233:7636/151‑1 (MQ=60)
GCAGCGGGGGCAGGCAGAACCAGCACCAGCAAGGGGAACAAGGCCTGTAACGACAGCCGCTTCATTCGCGTGAACCTTCACATTCTT‑‑‑GGGGCCGC‑‑‑‑TTTGCGGCCCCAATTACAAACACCAAAGCCAATACAATCATCAGGTCATCTGAATG < NB501016:282:H2V7GAFX2:3:21406:23531:16209/151‑1 (MQ=60)
GGGGGGCAGGCAGAACCAGCACCAGCAAGGGGAACAAGGCCAGTAACGACAGCCGCTTCATTCGCGTGAACCTTCACATTCTT‑‑‑GGGGCCGC‑‑‑‑TTTGCGGCCCCAATTACAAACACCAAAGCCAATACAATCATCAGGTCATCTGAATGATGG < NB501016:282:H2V7GAFX2:2:21307:11595:17899/151‑1 (MQ=60)
CAGGCAGAACCAGCACCAGCAAGGGGAACAAGGCCAGTAACGACAGCCGCTTCATTCGCGTGAACCTTCACATTCTT‑‑‑GGGGCCCC‑‑‑‑GTTGGGGCCCCAAATAAAAACACCAAAGCCAAAAAAAACATCACGTGATCGGAATGATGGTCTGG > NB501016:282:H2V7GAFX2:4:21411:1666:14108/1‑150 (MQ=60)
GAACCAGCACCAGCAAGGGGAACAAGGCCAGTAACGACAGCCGCTTCATTCGCGTGAACCTTCACATTCTT‑‑‑GGggggcctttgtcggcccaaaataaaaaaacaaaaacaaaaaaaaaaaaaattcaaagaaaatatggtatacagtatgg > NB501016:282:H2V7GAFX2:1:21303:4601:3449/1‑73 (MQ=60)
AAACCAGCACCAGCAAGGTGAACAAGGCCAGTAACGACAGCCGCTTCATTCGCGTGAACCTTCTCATTCTT‑‑‑GGGGCCTC‑‑‑‑TTTGCGGCCCCAATTACAAACACCAAAGCCAATACAATCATCAGGTCATCTGAATTATGGTCTGCATGATGG < NB501016:282:H2V7GAFX2:3:11406:25170:2794/151‑1 (MQ=60)
AACCAGCACCAGCAAGGGGAACAAGGCCAGTAACGACAGCCGCTTCATTCGCGTGAACCTTCACATTCTT‑‑‑GGGGCCGC‑‑‑‑GTTGGGGCCCCAATTAAAAACACCAAAGCCAAaaaaaacaaaacgtgaaatgaatgagggtaagcatgtaggt > NB501016:282:H2V7GAFX2:2:21301:10624:15903/1‑110 (MQ=60)
CCAGCAAGGGGAACAAGGCCAGTAACGACAGCCGCTTCATTCGCGTGAACCTTCACATTCTT‑‑‑GGgggcccgttggggccccaatttaaaacaacaaacccaaaaaaataataaggtcatctgaattatggtgttgattatggtggtttg > NB501016:282:H2V7GAFX2:2:11305:2220:7066/1‑64 (MQ=60)
CCAGCAAGGGGAACAAGGCCAGTAACGACAGCCGCTTCATTCGCGTGAACCTTCACATACTT‑‑‑GGggccgcattgaggccccaaataaaaaaaacaaagacaatacaataatcaggacatcataatgaaggtcggcattatagtgctttcat > NB501016:282:H2V7GAFX2:1:21308:12886:20191/1‑64 (MQ=60)
AGCAAGGGGAACAAGGCCAGTAACGACAGCCGCTTCATTCGCGTGAACCTTCACATTCTT‑‑‑GGGGCCGC‑‑‑‑TTTGCGGCCCCAATTACAAACACCAAAGCCAATACAATCATCAGGTCATCTGAATGATGGTCTGCATGATGGTGCTTTCAGTG < NB501016:282:H2V7GAFX2:3:11510:8610:10491/151‑1 (MQ=60)
GGGGAACAAGGCCAGTAACGACAGCCGCTTCATTCGCGTGAACCTTCACATTCTT‑‑‑GGgggcgcgtttggggccccaattaaaaaaacaaaaccaaaaaaataaaaaggtgatatgaattattgtgtggaatatggtggttttagtggtaat > NB501016:282:H2V7GAFX2:3:11410:24949:6892/1‑57 (MQ=60)
ACAAGGCCAGTAACGACAGCCGCTTCATTCGCGTGAACCTTCACATTCTT‑‑‑GGGGCCGC‑‑‑‑TTTGCGGCCCCAATTACAAACACCAAAGCCAATACAATCATCAGGTCATCTGAATGATGGTCTGCATGATGGTGCTTTCAGTGGAAATGGTCT < NB501016:282:H2V7GAFX2:1:11112:13577:13974/151‑1 (MQ=60)
AGGCCAGTAACGACAGCCGCTTCATTCGCGTGAACCTTCACATTCTT‑‑‑GGGGCCGC‑‑‑‑TTTGCGGCCCCAATTACAAACACCAAAGCCAATACAATCATCAGGTCATCTGAATGATGGTCTGCATGATGGTGCTTTCAGTGGAAATGGTCTTGG < NB501016:282:H2V7GAFX2:3:21603:13219:2415/151‑1 (MQ=60)
AGGCCAGTAACGACAGCCGCTTCATTCGCGTGAACCTTCACATTCTT‑‑‑GGGGCCGC‑‑‑‑TTTGCGGCCCCAATTACAAACACCAAAGCCAATACAATCATCAGGTCATCTGAATGATGGTCTGCATGATGGTGCTTTCAGTGGAAATGGTCTTGG < NB501016:282:H2V7GAFX2:2:21203:8141:8900/151‑1 (MQ=60)
CCAGTAACGACAGCCGCTTCATTCGCGTGAACCTTCACATTCTT‑‑‑GG‑‑‑GGCCGCGTTTG‑GGCCCCAAATAAAAAAACCAAAGCCAATAAAATAATAAGGTAAAATGAATTATGGTCTGGATTATGGTGCTTTGATTGGAAATGGTGTTGGGAT > NB501016:282:H2V7GAFX2:4:11503:1815:16403/1‑151 (MQ=33)
GTAACGACAGCGGCTTCATTCGCGTGAACCTTCACATTCTT‑‑‑GGGGCCGC‑‑‑‑TTTGCGGCCCCAATTACAAACACCAAAGCCAATACAATCTTCAGGTCTTCTGAATGATGGTCTGCATGTTGGTGCTTTCAGTGGAAATGGTCTTGGCATTGG < NB501016:282:H2V7GAFX2:2:21211:1139:15947/151‑1 (MQ=60)
GTAACGACAGCCGCTTCATTCGCGTGAACCTTCACATTCTT‑‑‑GGgggcccgttgaggccccaaaaaaaaaaaaaaaaacacaataaaaaataaagtcatattaaatatgatatggaagaatgtggatttaaaggaaattgtatttgaatatt > NB501016:282:H2V7GAFX2:4:21404:5128:7909/1‑43 (MQ=60)
AACGACAGCCGCTTCATTCGCGTGAACCTTCACATTCTT‑‑‑GGGGCCGC‑‑‑‑TTTGCGGCCCCAATTACAAACACCAAAGCGAATACAATCTTCAGGTCATCTGAATGATGGTCTGCATGAT < NB501016:282:H2V7GAFX2:2:11306:4495:9608/117‑1 (MQ=60)
ACAGCCGCTTCATTCGCGTGAACCTTCACATTCTT‑‑‑GGGGCCGC‑‑‑‑TTTGCGGCCCCAATTACAAACACCAAAGCCAATACAATCATCAGGTCATCTGAATGATGGTCTGCATGATGGTGCTTTCAGTGGAAATGGTCTTGGCATTGGCCTGGT < NB501016:282:H2V7GAFX2:2:11208:4442:3365/151‑1 (MQ=60)
GCCGCTTCATTCGCGTGAACCTTCACATTCTT‑‑‑GGgggcgccggacgggcccccctaagaaacacacacccaaaacaaacagcaggtggccacagttgaggggggcatgaagggtgggtaccggggaaatgggggtggcatgggggggggtg > NB501016:282:H2V7GAFX2:4:21411:2975:1579/1‑34 (MQ=60)
GCCGCTTCATTCGCGTGAACCTTCACATTCTT‑‑‑GGGGCCGC‑‑‑‑TTTGCGGCCCCAATTACAAACACCAAAGCCAATACAATCATCAGGGCATCTGAATGATGGTCTGCATGATGGTGCTTTCAGTGGAAATGGTCTTGGCATTGGCCTGG < NB501016:282:H2V7GAFX2:1:21108:25097:16859/147‑1 (MQ=60)
GCGTGAACCTTCACATTCTT‑‑‑GGGGCCGC‑‑‑‑TTTGCGGCCCCAATTACAAACACCAAAGCCAATACAATCATCAGGTCATCTGAATGATGGTCTGCATGATGGTGCTTTCAGAGGAAATGGTCTTGGCATTGGCCTGGTAGTTGCTCTGCGCCT < NB501016:282:H2V7GAFX2:3:11412:24401:13184/151‑1 (MQ=60)
CCTTCACATTCTT‑‑‑GGGGCCGC‑‑‑‑TTTGCGGCCTCAATTACAAACACCAAAGCCAATACAATCATCAGGTCATCTGAATGATGGTCTGCATGATGGTGCTTTCAGTGGAAATGGTCTTGGCATTGGCCTGGTAGTTGCTCTGCGCCTTGATCAG < NB501016:282:H2V7GAFX2:1:21301:14622:4109/151‑1 (MQ=60)
TCACATTCTT‑‑‑GGGGCCGC‑‑‑‑TTTGCGGCCCCAATTACAAACACCATAGCCAATACAATCATCAGGTCATCTGAATGATGGTCTGCATGATGGTGCTTTCAGTGGAAATGGTCTTGGCATTGGCCTGGTAGTTGCTCTGCGCCTTGATCAGG < NB501016:282:H2V7GAFX2:4:21409:7153:13244/149‑1 (MQ=60)
TCACATTCTT‑‑‑GGGGCCGC‑‑‑‑TTTGCGGCCCCAATTACAAACACCAAAGCCAATACAATCATCAGGTCATCTGAATGATGGTCTGCATGATGGTGCTTTCAGTGGAAATGGTCTTGGCATTGGCCTGGTAGTTGCTCTGCGCCTTGATCAGG < NB501016:282:H2V7GAFX2:1:21208:24499:4720/149‑1 (MQ=60)
GC‑‑‑CGC‑‑‑‑TTTGCGGCCCAAATTACAAACACCAAAGCCAATACAATCATCAGGTCATCTGAATGATGGTCTGCATGATGGTGCTTTCAGTGGAAATGGTCTTGGCATTGGCCTGGTAGTTGCTCTGCGCCTTGATCAGGTTTACCAGCTCGCCG < NB501016:282:H2V7GAFX2:1:21103:24894:4632/151‑1 (MQ=60)
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CGAACACAGGTAGCGGCCGGTGACCAGGCTTTGCCATTGATAGAACGGGGCGGGGGCAGCGGGGGCAGGCAGAACCAGCACCAGCAAGGGGAACAAGGCCAGTAACGACAGCCGCTTCATTCGCGTGAACCTTCACATTCTT‑‑‑GG‑‑‑CGC‑‑‑‑TTTGCGGCCCCAATTACAAACACCAAAGCCAATACAATCATCAGGTCATCTGAATGATGGTCTGCATGATGGTGCTTTCAGTGGAAATGGTCTTGGCATTGGCCTGGTAGTTGCTCTGCGCCTTGATCAGGTTTACCAGCTCGCCG > NC_002947_CJ‑RC/4982145‑4982437
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| Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 0 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
