Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A3 F48 I1 R1 58 71.3 3054194 98.3% 3002272 146.3

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation annotation gene description
MC JC NC_002947_CJ‑RC 4,274,044 Δ107 bp intergenic (‑168/‑1) glcC ← / → glcD transcriptional regulator GlcC/glycolate oxidase FAD‑linked subunit

Missing coverage evidence...
   seq id start end size ←reads reads→ gene description
* * ÷ NC_002947_CJ‑RC 4274044 4274150 107 84 [0] [0] 85 glcC/glcD transcriptional regulator GlcC/glycolate oxidase FAD‑linked subunit

New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_002947_CJ‑RC = 42740430 (0.000)84 (1.190) 62/290 0.1 100% intergenic (‑167/‑108) glcC/glcD transcriptional regulator GlcC/glycolate oxidase FAD‑linked subunit
?NC_002947_CJ‑RC 4274151 = 0 (0.000)coding (1/1500 nt) glcD glycolate oxidase FAD‑linked subunit

GATK/CNVnator alignment

N/A