Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A1 F11 I1 R1
|
56 |
91.5 |
3907174 |
98.4% |
3844659 |
146.2 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| RA |
NC_002947_CJ‑RC |
3,845,705 |
+G |
intergenic (‑72/+26) |
PP_3394 ← / ← PP_3395 |
3‑hydroxy‑3‑methylglutaryl‑CoA lyase/LysR family transcriptional regulator |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NC_002947_CJ‑RC | 3,845,703 | 1 | . | G | 100.0%
| 82.0
/ NA
| 24 | intergenic (‑70/+28) | PP_3394/PP_3395 | 3‑hydroxy‑3‑methylglutaryl‑CoA lyase/LysR family transcriptional regulator |
| Reads supporting (aligned to +/- strand): ref base . (0/0); new base G (16/8); total (16/8) |
CTGCTGTCGGCATGATCACTTGCAGGCTCTGCAAGCCATCGCGCAGGCCGACTTCATTGATTGTTATTGTTGTCATCGCGGTCTCTCTGTCTGAAGCGTTGCGCCAGACTAAGAGCTGGATGACGGGCAGAAAAGACGTGTTTCGC‑GGCTGATCCATCGTCAGCCACGATGGATCAGCCCGCGCCCTGCCAGGCCGGTGCACGCAGCAACAGGTGGTCAAGCAGGCGCCGAGCCGACAGCGAGAGCGTGTGCCGGTCGCGCATGCAGATGACGAAT > NC_002947_CJ‑RC/3845558‑3845833
|
ctgctgTCGGCATGATCACTTGCAGGCTCTGCAAGCCATCGCGCAGGCCGACTTCATTGATTGTTATTGTTGTCATCGCGGTCTCTCTGTCTGAAGCGTTGCGCCAGACTAAGAGCTGGATGACGGGCAGAAAAGACGTGTTTCGC‑ggg > 2:179963/1‑148 (MQ=255)
tCGGCATGATCACTTGCAGGCTCTGCAAGCCATCGCGCAGGCCGACTTCATTGATTGTTATTGTTGTCATCGCGGTCTCTCTGTCTGAAGCGTTGCGCCAGACTAAGAGCTGGATGACGGGCAGAAAAGACGTGTTTCGC‑gggctga < 2:319442/147‑6 (MQ=255)
ggCATGATCACTTGGTGGCTCTGCAAGCCATCGCGCAGGCCGACTTCATTGATTGTTATTGTTGTCATGGCGGTCTCTCTGTCTGTAGCGTTGCGCCAGACTAAGAGCTGGATGACGGGCAGAAAAGACGTGTTTCGCGGGCTGATcc < 4:298123/148‑1 (MQ=255)
gCATGATCACTTGCAGGCTCTGCAAGCCATCGCGCAGGCCGACTTCATTGATTGTTATTGTTGTCATCGCGGTCTCTCTGTCTGAAGCGTTGCGCCAGACTAAGAGCTGGATGACGGGCAGAAAAGACGTGTTTCGCGGGCTGATCCa > 8:21312/1‑148 (MQ=255)
cATGATCACTTGCAGGCTCTGCAAGCCATCGCGCAGGCCGACTTCATTGATTGTTATTGTTGTCATCGCGGTCTCTCTGTCTGAAGCGTTGCGCCAGACTAAGAGCTGGATGACGGGCAGAAAAGACGTGTTTCGCGGGCTGATCCATc < 2:340033/149‑1 (MQ=255)
aTCACTTGCAGGCTCTGCAAGCCATCGCGCAGGCCGACTTCATTGATTGTTATTGTTGTCATCGCGGTCTCTCTGTCTGAAGCGTTGCGCCAGACTAAGAGCTGGATGACGGGCAGAAAAGACGTGTTTCGCGGGCTGATCCATCGTCa < 3:131747/149‑1 (MQ=255)
cAGGCTCTGCAAGCCATCGCGCAGGCCGACTTCATTGATTGTTATTGTTGTCATCGCGGTCTCTCTGTCTGAAGCGTTGCGCCAGACTAAGAGCTGGATGACGGGCAGAAAAGACGTGTTTCGCGGGCTGATCCATCGTCAGCCACGAt < 1:2696/149‑1 (MQ=255)
cAGGCTCTGCAAGCCATCGCGCAGGCCGACTTCATTGATTGTTATTGTTGTCATCGCGGTCTCTCTGTCTGAAGCGTTGCGCCAGACTAAGAGCTGGATGACGGGCAGAAAAGACGTGTTTCGCGGGCTGATCCATCGTCAGCCACGAt < 3:432115/149‑1 (MQ=255)
gCTCTGCAAGCCATCGCGCAGGCCGACTTCATTGATTGTTATTGTTGTCATCGCGGTCTCTCTGTCTGAAGCGTTGCGCCAGACTAAGAGCTGGATGACGGGCAGAAAAGACGTGTTTCGCGGGCTGATCCATCGTCAGCCACGATgg < 6:285174/148‑1 (MQ=255)
tGCAAGCCATCGCGCAGGCCGACTTCATTGATTGTTATTGTTGTCATCGCGGTCTCTCTGTCTGAAGCGTTGCGCCAGACTAAGAGCTGGATGACGGGCAGAAAAGACGTGTTTCGCGGGCTGATCCATCGTCAGCCACGATGGATc < 3:200139/147‑1 (MQ=255)
cAAGCCATCGCGCAGGCCGACTTCATTGATTGTTATTGTTGTCATCGCGGTCTCTCTGTCTGAAGCGTTGCGCCAGACTAAGAGCTGGATGACGGGCAGAAAAGACGTGTTTCGCGGGCTGATCCATAGTCAGCCCCGATGGATCAGcc > 8:143077/1‑149 (MQ=255)
aaGCCATCGCGCAGGCCGACTTCATTGATTGTTATTGTTGTCATCGCGGTCTCTCTGTCTGAAGCGTTGCGCCAGACTAAGAGCTGGATGACGGGCAGAAAAGACGTGTTTCGCGGGCTGATCCATCGTCAGCCACGATGGATCa < 5:14962/145‑1 (MQ=255)
cATCGCGCAGGCCGACTTCATTGATTGTTATTGTTGTCATCGCGGTCTCTCTGTCTGAAGCGTTGCGCCAGACTAAGAGCTGGATGACGGGCAGAAAAGACGTGTTTCGCGGGCTGATACATAGTGAGCCACGCTGGATCAGCCcccg > 5:343339/1‑148 (MQ=255)
gCCGACTTCATTGATTGTTATTGTTGTCATCGCGGTCTCTCTGTCTGAATCGTTGCGCCAGACTAAGAGCTGGATGACGGGCAGAAAAGACGTGTTTCGCGGGCTGATCCAt > 3:11634/1‑112 (MQ=255)
cGACTTCATTGATTGTTATTGTTGTCATCGCGGTCTCTCTGTCTGAAGCGTTGCGCCAGACTAAGAGCTGGATGACGGGCAGAAAAGACGTGTTTCGCGGGCTGATACATAGTCAGCCCCCATGGCTAAGCCCCCGCCCGGCCACGCCg > 1:364298/1‑149 (MQ=255)
cTTCATTGATTGTTATTGTTGTCATCGCGGTCTCTCTGTCTGAAGCGTTGCGCCAGACTAAGAGCTGGATGACGGGCAGAAAAGACGTGTTTCGCGGGCAGATACAAAGACAGCCACGATGGATAACCCCCCGCCCTGCCCGGcccggg > 2:18225/1‑145 (MQ=255)
gttgtCATCGCGGTCTCTCTGTCTGAAGCGTTGCGCCAGACTAAGAGCTGGATGACGGGCAGAAAAGACGTGTTTCGCGGGCTGTTACATGGGGAGCCCCGCTGGGTAAGCCCGCCCCCCGCCCGGCCGGGGGCCGCCGCCAAAggtg > 5:426589/1‑148 (MQ=255)
cgGTCTCTCTGTCTGAAGCGTTGCGCCAGACTAAGAGCTGGATGACGGGCAGAAAAGACGTGTTTCGCGGGCTGATCCATCGTCAGCCACGATGGATCATCCCGCGCCCTGCCCGGCCGGTGCACGCAGCAACAGGTGGTCAAGCAGgc > 2:464362/1‑149 (MQ=255)
tctctGTCTGAAGCGTTGCGCCAGACTAAGAGCTGGATGACGGGCAGAAAAGACGTGTTTCGCGGGCAGAACCATACGGACCCACGATGGGTAAGCCCCCCCCCCGCCACGCCGGGGCACGCCGCCACAGGGGGTCAAGCCCGCgccg > 6:411339/1‑148 (MQ=255)
tctgtctgAAGCGTTGCGCCAGACTAAGAGCTGGATGACGGGCAGAAAAGACGTGTTTCGCGGGCTGATCCATCGTCAGCCACGATGGATCAGCCCGCGCCCTGCCAGGCCGGTGCACGCAGCAACAGGTGGTCAAGCAGGCgccgag > 6:248492/1‑148 (MQ=255)
gtctgAAGCGTTGCGCCAGACTAAGAGCTGGATGACGGGCAGAAAAGACGTGTTTCGCGGGCTGAAACCACGTCAGCCCCCGTGGATAACCCCCCGCCCAGCCACGCCCGGGCACGCCGCAACAGGTGGTGAACCAGGCcccccgccgc > 2:56449/1‑148 (MQ=255)
gcCAGACTAAGAGCTGGATGGCGGGCAGAAAAGACGTGTTTCGCGGGCAGATACAACGTCAGCCACGATGGTTAAGCCCCCGCCCAGCCCCGCCCGTGCACGCACCAACAGGTGGTCAATCACACCCCCACCCGCCAGCCAGAGCgtg > 6:128868/1‑148 (MQ=255)
aGACTAAGAGCTGGATGACGGGCAGAAAAGACGTGTTTCGCGGGCATATACATCGTCAGCCACGATGGGTAAGCCCGCGCCCTGCCCGGCCGGTGCACGCAGCCACAGGTGGTCAAGCCGGCGCCGAGCCGCCCCCGCGAGCgtgttc > 6:172350/1‑146 (MQ=255)
agagCTGGATGACGGGCAGAAAAGACGTGTTTCGCGGGCATATACAAACTGAACCCCCATGGAAAACCCCCCCCCCGGCCCGGGCCGTGCGCCCCGCAAAAAGTGGTCAAACAGGCGCCCCGCCGCCAGCCAGGCCGtgtggccgtag > 6:434517/1‑141 (MQ=255)
gggCAGAAAAGACGTGTTTCGCGGGCTGATCCATCGTCAGCCACGATGGATCGGCCCGCGCCCTGCCAGGCCGGTGCACGCAGCAACAGGTGGTCAAGCAGGCGCCGAGCCGACAGCGAGAGCGTGTGCCGGTCGCGCATGCAGATGAc > 3:124294/1‑149 (MQ=255)
aaaaGACGTGTTTCGCGGGCCGATCCATCGTCAGCCACGATGGATCAGCCCCCCCCCAGCCAGGCCGGTGCACGCAGCAACAGGTGGTCAAGCAGGCGCCGAGCCGACCGCGAGAGCGTGTGCCGGTCGCGCATTCAGAATACGAAt > 6:421588/1‑147 (MQ=255)
|
CTGCTGTCGGCATGATCACTTGCAGGCTCTGCAAGCCATCGCGCAGGCCGACTTCATTGATTGTTATTGTTGTCATCGCGGTCTCTCTGTCTGAAGCGTTGCGCCAGACTAAGAGCTGGATGACGGGCAGAAAAGACGTGTTTCGC‑GGCTGATCCATCGTCAGCCACGATGGATCAGCCCGCGCCCTGCCAGGCCGGTGCACGCAGCAACAGGTGGTCAAGCAGGCGCCGAGCCGACAGCGAGAGCGTGTGCCGGTCGCGCATGCAGATGACGAAT > NC_002947_CJ‑RC/3845558‑3845833
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
N/A
