Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A1 F42 I1 R1
|
60 |
69.9 |
3000528 |
98.3% |
2949519 |
146.4 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| RA |
NC_002947_CJ‑RC |
3,632,137 |
T→A |
L344Q (CTG→CAG) |
PP_5590 → |
hypothetical protein |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NC_002947_CJ‑RC | 3,632,137 | 0 | T | A | 84.5%
| 152.9
/ 14.7
| 58 | L344Q (CTG→CAG) | PP_5590 | hypothetical protein |
| Reads supporting (aligned to +/- strand): ref base T (5/4); new base A (22/27); total (27/31) |
| Fisher's exact test for biased strand distribution p-value = 7.20e-01 |
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 |
GTCGCCTCGACCGCTTCGAGTGGAAGCTGGTGGGCAAGAAGGAGATGTACATCCCCTACAACGCCAACAAGGTGTTCACCGCCAGCAACGCCGAGGCGCTGCTGGCCCCCCATCACCTGAACCCCGACGCCATCCGCTGGGAGCTGCACCGTGTGTGGGTGGTGGAGGCGACGCTGAAGAATGGCCAGCGCCATGTGATGCCGCGTAGCACCTACTACCTCGACGAAGACACCTGGGCTGCCGTGCTGGGCGAGCGCTATGACGCCCGCAACCAGTTGGCCAAGGTGGTCTGG > NC_002947_CJ‑RC/3631993‑3632285
|
gTCGCCTCGACCGCTTCGAGTGGAAGCTGGTGGGCAAGAAGGAGATGTACATCCCCTACAACGCCAACAAGGTGTTCACCGCCAGCAACGCCGAGGCGCTGCTGGCCCCCCATCACCTGAACCCCGACGCCATCCGCTGGGAGCAGCAc > 1:312280/1‑149 (MQ=255)
gCCTCGACCGCTTCGAGTGGAAGCTGGTGGGCAAGAAGGAGATGTACATCCCCTACAACGCCAACAAGGTGTTCACCGCCAGCAACGCCGAGGCGCTGCTGGCCCCCCATCACCTGAACCCCGACGCCATCCGCTGGGAGCAGCACCgt > 2:164611/1‑149 (MQ=255)
ccTCGACCGCTTCGAGTGGAAGCTGGTGGGCAAGAAGGAGATGTACATCCCCTACAACGCCAACAAGGTGTTCACCGCCAGCAACGCCGAGGCGCTGCTGGCCCCCCATCACCTGAACCCCGACGCCATCCGCTGGGAGCTGCACCgt > 8:362688/1‑148 (MQ=255)
ccTCGACCGCTTCGAGTGGAAGCTGGTGGGCAAGAAGGAGATGTACATCCCCTACAACGCCAACAAGGTGTTCACCGCCAGCAACGCCGAGGCGCTGCTGGCCCCCCATCACCTGAACCCCGACGCCATCCGCTGGGAGCTGCACCgt < 7:260012/148‑1 (MQ=255)
cTCGACCGCTTCGAGTGGAAGCTGGTGGGCAAGAAGGAGATGTACATCCCCTACAACGCCAACAAGGTGTTCACCGCCAGCAACGCCGAGGCGCTGCTGGCCCCCCATCACCTGAACCCCGACGCCATCCGCTGGGAGCAGCACCgtgt < 3:217689/149‑1 (MQ=255)
gACCGCTTCGAGTGGAAGCTGGTGGGCAAGAAGGAGATGTACATCCCCTACAACGCCAACAAGGTGTTCACCGCCAGCAACGCCGAGGCGCTGCTGGCCCCCCATCACCTGAACCCCGACGCCATCCGCTGGGAGCAGCACCgtgtgt < 4:46239/148‑1 (MQ=255)
aCCGCTTCGAGTGGAAGCTGGTGGGCAAGAAGGAGATGTACATCCCCTACAACGCCAACAAGGTGTTCACCGCCAGCAACGCCGAGGCGCTGCTGGCCCCCCATCACCTGAACCCCGACGCCATCCGCTGGGAGCTGCACCGtgtgtg > 7:52953/1‑148 (MQ=255)
aCCGCTTCGAGTGGAAGCTGGTGGGCAAGAAGGAGATGTACATCCCCTACAACGCCAACAAGGTGTTCACCGCCAGCAACGCCGAGGCGCTGCTGGCCCCCCATCACCTGAACCCCGACGCCATCCGCTGGGAGCAGCACCGTGTgtgg < 6:28796/149‑1 (MQ=255)
ccGCTTCGAGTGGAAGCTGGTGGGCAAGAAGGAGATGTACATCCCCTACAACGCCAACAAGGTGTTCACCGCCAGCAACGCCGAGGCGCTGCTGGCCCCCCATCACCTGAACCCCGACGCCATCCGCTGGGAGCAGCACCGTGTgtggg > 2:295952/1‑149 (MQ=255)
gTGGAAGCTGGTGGGCAAGAAGGAGATGTACATCCCCTACAACGCCAACAAGGTGTTCACCGCCAGCAACGCCGAGGCGCTGCTGGCCCCCCATCACCTGAACCCCGTCGCCATCCGCTGGGAGCAGCACCGTGTGTGGGTGGTGGAg < 7:48154/148‑1 (MQ=255)
gTGGAAGCTGGTGGGCAAGAAGGAGATGTACATCCCCTACAACGCCAACAAGGTGTTCACCGCCAGCAACGCCGAGGCGCTGCTGGCCCCCCATCACCTGAACCCCGACGCCATCCGCTGGGAGCAGCACCGTGTGTGGGTGGTGGAgg > 6:79/1‑149 (MQ=255)
gTGGAAGCTGGTGGGCAAGAAGGAGATGTACATCCCCTACAACGCCAACAAGGTGTTCACCGCCAGCAACGCCGAGGCGCTGCTGGCCCCCCATCACCTGAACCCCGACGCCATCCGCTGGGAGCAGCACCGTGTGTGGGTGGTGGAgg > 6:343459/1‑149 (MQ=255)
gTGGAAGCTGGTGGGCAAGAAGGAGATGTACATCCCCTACAACGCCAACAAGGTGTTCACCGCCAGCAACGCCGAGGCGCTGCTGGCCCCCCATCACCTGAACCCCGACGCCATCCGCTGGGAGCAGCACCGTGTGTGGGTGGTGGAgg > 3:353114/1‑149 (MQ=255)
tGGAAGCTGGTGGGCAAGAAGGAGATGTACATCCCCTACAACGCCAACAAGGTGTTCACCGCCAGCAACGCCGAGGCGCTGCTGGCCCCCCATCACCTGAACCCCGACGCCATCCGCTGGGAGCAGCACCGTGTGTGGGTGGTGGAGGc < 1:354664/149‑1 (MQ=255)
gtggGCAAGAAGGAGATGTACATCCCCTACAACGCCAACAAGGTGTTCACCGCCAGCAACGCCGAGGCGCTGCTGGCCCCCCATCACCTGAACCCCGACGCCATCCGCTGGGAGCTGCACCGTGTGTGGGTGGTGGAGGCGACGCTga < 2:145249/148‑1 (MQ=255)
gtggGCAAGAAGGAGATGTACATCCCCTACAACGCCAACAAGGTGTTCACCGCCAGCAACGCCGAGGCGCTGCTGGCCCCCCATCACCTGAACCCCGACGCCATCCGCTGGGAGCAGCACCGTGTGTGGGTGGTGGAGGCGACGCTgaa < 3:2324/149‑1 (MQ=255)
gtgcGCAAGAAGGAGATGTACATCCCCTACAACGCCAACAAGGTGTTCACCGCCAGCAACGCCGAGGCGCTGCTGGCCCCCCATCACCTGAACCCCGACGCCATCCGCTGGGAGCAGCACCGTGTGTGGGTGGTGGAGGCGACGCTg < 1:172080/147‑1 (MQ=255)
cAAGAAGGAGATGTACATCCCCTACAACGCCAACAAGGTGTTCACCGCCAGCAACGCCGAGGCGCTGCTGGCCCCCCATCACCTGAACCCCGACGCCATCCGCGGGGAGCTGCAGCGTGTGTGGGTGGTGGGGGCGGCGCGGAAGATTg > 2:256690/1‑149 (MQ=255)
aagaagGAGATGTACATCCCCTACAACGCCAACAAGGTGTTCACCGCCAGCAACGCCGAGGCGCTGCTGGCCCCCCATCACCTGAACCCCGACGCCATCCGCTGGGAGCAGCACCGTGTGTGGGTGGTGGAGGCGACGCTGAAGAATg < 7:257976/148‑1 (MQ=255)
agaagGAGATGTACATCCCCTACAACGCCAACAAGGTGTTCACCGCCAGCAACGCCGAGGCGCTGCTGGCCCCCCATCACCTGAACCCCGACGCCATCCGCTGGGAGCAGCACCGTGTGTGGGTGGTGGAGGCGACGCTGAAGAATGGc < 3:253365/149‑1 (MQ=255)
agGAGATGTACATCCCCTACAACGCCAACAAGGTGTTCACCGCCAGCAACGCCGAGGCGCTGCTGGCCCCCCATCACCTGAACCCCGACGCCATCCGCTGGGAGCAGCACCGTGTGTGGGTGGTGGAGGCGACGCTGAAGAATGGCCAg < 2:329770/149‑1 (MQ=255)
gagaTGTACATCCCCTACAACGCCAACAAGGTGTTCACCGCCAGCAACGCCGAGGCGCTGCTGGCCCCCCATCACCTGAACCCCGACGCCATCCGCTGGGAGCAGCACCGTGTGTGGGTGGTGGAGGCGACGCTGAAGAATGGCCAgc < 8:96667/148‑1 (MQ=255)
agaTGTACATCCCCTACAACGCCAACAAGGTGTTCACCGCCAGCAACGCCGAGGCGCTGCTGGCCCCCCATCACCTGAACCCCGACGCCATCCGCTGGGAGCAGCACCGTGTGTGGGTGGTGGAGGCGACGCTGAAGAATGGCCAgcgc < 2:312280/149‑1 (MQ=255)
tGTACATCCCCTACAACGCCAACAAGGTGTTCACCGCCAGCAACGCCGAGGCGCTGCTGGCCCCCCATCACCTGAACCCCGACGCCATCCGCTGGGAGCAGCACCGTGTGTGGGTGGTGGAGGCGACGCTGAAGAATGGCCAGCGCCAt < 5:295409/149‑1 (MQ=255)
tGTACATCCCCTACAACGCCAACAAGGTGTTCACCGCCAGCAACGCCGAGGCGCTGCTGGCCCCCCATCACCTGAACCCCGACGCCATCCGCTGGGAGCAGCACCGTGTGTGGGTGGTGGAGGCGACGCTGAAGAATGGCCAGCGCCAt < 1:275966/149‑1 (MQ=255)
gTACATCCCCTACAACGCCAACAAGGTGTTCACCGCCAGCAACGCCGAGGCGCTGCTGGCCCCCCATCACCTGAACCCCGACGCCATCCGCTGGGAGCAGCACCGTGTGTGGGTGGTGGAGGCGACGCTGAAGAATGGCCAGCGCCAtg > 6:300311/1‑149 (MQ=255)
gTACATCCCCTACAACGCCAACAAGGTGTTCACCGCCAGCAACGCCGAGGCGCTGCTGGCCCCCCATCACCTGAACCCCGACGCCATCCGCTGGGAGCAGCACCGTGTGTGGGTGGTGGAGGCGACGCTGAAGAATGGCCAGCGCCAtg > 3:299011/1‑149 (MQ=255)
aCATCCCCTACAACGCCAACAAGGTGTTCACCGCCAGCAACGCCGAGGCGCTGCTGGCCCCCCATCACCTGAACCCCGACGCCATCCGCTGGGAGCAGCACCGTGTGTGGGTGGTGGAGGCGACGCTGAAGAATGGCCAGCGCCAtgtg > 4:235614/1‑149 (MQ=255)
aCATCCCCTACAACGCCAACAAGGTGTTCACCGCCAGCAACGCCGAGGCGCTGCTGGCCCCCCATCACCTGAACCCCGACGCCATCCGCTGGGAGCAGCACCGTGTGTGGGTGGTGGAGGCGACGCTGAAGAATGGCCAGCGCCAtgt < 8:100808/148‑1 (MQ=255)
cATCCCCTACAACGCCAACAAGGTGTTCACCGCCAGCAACGCCGAGGCGCTGCTGGCCCCCCATCACCTGAACCCCGACGCCATCCGCTGGGAGCAGCACCGTGTGTGGGTGGTGGAGGCGACGCTGAAGAATGGCCAGCGCCATGTGa > 3:82133/1‑149 (MQ=255)
cATCCCCTACAACGCCAACAAGGTGTTCACCGCCAGCAACGCCGAGGCGCTGCTGGCCCCCCATCACCTGAACCCCGACGCCATCCGCTGGGAGCAGCACCGTGTGTGGGTGGTGGAGGCGACGCTGAAGAATGGCCAGCGCCATGTGa < 5:182347/149‑1 (MQ=255)
aTCCCCTACAACGCCAACAAGGTGTTCACCGCCAGCAACGCCGAGGCGCTGCTGGCCCCCCATCACCTGAACCCCGACGCCATCCGCTGGGAGCAGCACCGTGTGTGGGTGGTGGAGGCGACGCTGAAGAATGGCCAGCGCCATGTGAt < 5:79/149‑1 (MQ=255)
ccccTACAACGCCAACAAGGTGTTCACCGCCAGCAACGCCGAGGCGCTGCTGGCCCCCCATCACCTGAACCCCGACGCCATCCGCTGGGAGCAGCACCGTGTGTGGGTGGTGGAGGCGACGCTGAAGAATGGCCAGCGCCATGTGATGc > 5:20513/1‑149 (MQ=255)
aCGCCAACAAGGTGTTCACCGCCAGCAACGCCGAGGCGCTGCTGGCCCCCCATCACCTGAACCCCGACGCCATCCGCTGGGAGCAGCACCGTGTGTGGGTGGTGGAGGCGACGCTGAAGAATGGCCAGCGCCATGTGATGCCGCGTAGc < 5:343459/149‑1 (MQ=255)
cGCCAACAAGGTGTTCACCGCCAGCAACGCCGAGGCGCTGCTGGCCCCCCATCACCTGAACCCCGACGCCATCCGCTGGGAGCAGCACCGTGTGTGGGTGGTGGAGGCGACGCTGAAGAATGGCCAGCGCCATGTGATGCCGCGTAGc < 8:46035/148‑1 (MQ=255)
caacaaGGTGTTCACCGCCAGCAACGCCGAGGCGCTGCTGGCCCCCCATCACCTGAACCCCGACGCCATCCGCTGGGAGCAGCACCGTGTGTGGGTGGTGGAGGCGACGCTGAAGAATGGCCAGCGCCATGTGATGCCGCGTAGCACct < 1:295952/149‑1 (MQ=255)
acaaGGTGTTCACCGCCAGCAACGCCGAGGCGCTGCTGGCCCCCCATCACCTGAACCCCGACGCCATCCGCTGGGAGCTGCACCGTGTGTGGGTGGT‑GAGGCGACGCTGAAGAATGGCCAGCGCCATGTGATGCCGCGTAGCACctac > 1:242784/1‑148 (MQ=255)
ccGCCAGCAACGCCGAGGCGCTGCTGGCCCCCCATCACCTGAACCCCGACGCCATCCGCTGGGAGCAGCACCGTGTGTGGGTGGTGGAGGCGACGCTGAAGAATGGCCAGCGCCATGTGATGCCGCGTAGCACCTACTACCTcgacg > 3:81469/1‑147 (MQ=255)
ccGCCAGCAACGCCGAGGCGCTGCTGGCCCCCCATCACCTGAACCCCGACGCCATCCGCTGGGAGCAGCACCGTGTGTGGGTGGTGGAGGCGACGCTGAAGAATGGCCAGCGCCATGTGATGCCGCGTAGCACCTACTACCTCGACGaa < 5:300311/149‑1 (MQ=255)
cGCCAGCAACGCCGAGGCGCTGCTGGCCCCCCATCACCTGAACCCCGACGCCATCCGCTGGGAGCAGCACCGTGTGTGGGTGGTGGAGGCGACGCTGAAGAATGGCCAGCGCCATGTGATGCCGCGTAGCACCTACTACCTcgacg > 6:198051/1‑146 (MQ=255)
gCCGAGGCGCTGCTGGCCCCCCATCACCTGAACCCCGACGCCATCCGCTGGGAGCAGCACCGTGTGTGGGTGGTGGAGGCGACGCTGAAGAATGGCCAGCGCCATGTGATGCCGCGTAGCACCTACTACCTCGACGAAGACACCTGGGc > 5:350443/1‑149 (MQ=255)
gAGGCGCTGCTGGCCCCCCATCACCTGAACCCCGACGCCATCCGCTGGGAGCAGCACCGTGTGTGGGTGGTGGAGGCGACGCTGAAGAATGGCCAGCGCCATGTGATGCCGCGTAGCACCTACTACCTCGACGAAGACACCTGGGCTGc > 3:46115/1‑149 (MQ=255)
ggCGCTGCTGGCCCCCCATCACCTGAACCCCGACGCCATCCGCTGGGAGCTGCACCGTGTGTGGGTGGTGGAGGCGACGCTGAAGAATGGCCAGCGCCATGTGATGCCGCGTAGCACCTACTACCTCGACGAAGACACCTGGGCTGcc < 8:243515/148‑1 (MQ=255)
ctgGCCCCCCATCACCTGAACCCCGACGCCATCCGCTGGGAGCAGCACCGTGTGTGGGTGGTGGAGGCGACGCTGAAGAATGGCCAGCGCCATGTGATGCCGCGTAGCACCTACTACCTCGACGAAGACACCTGGGCTGCCGTGCTgg < 5:151021/148‑1 (MQ=255)
cccccATCACCTGAACCCCGACGCCATCCGCTGGGAGCAGCACCGTGTGTGGGTGGTGGAGGCGACGCTGAAGAATGGCCAGCGCCATGTGATGCCGCGTAGCACCTACTACCTCGACGAAGACACCTGGGCTGCCGTGCTGGGCGAgc > 5:164266/1‑149 (MQ=255)
cccATCACCTGAACCCCGACGCCATCCGCTGGGAGCAGCACCGTGTGTGGGTGGTGGAGGCGACGCTGAAGAATGGCCAGCGCCATGTGATGCCGCGTAGCACCTACTACCTCGACGAAGACACCTGGGCTGCCGTGCTGGGCGAgcgc > 1:204686/1‑149 (MQ=255)
cctCACCTGAACCCCGACGCCATCCGCTGGGAGCAGCACCGTGTGGGGGTGGTGGTGGCGACGCTGAAGAATGGCCAGCGCCATTTGATGCCGCGTAGCACCTACTACCTCGACGAAGACACCTGGGCTGCCGTGCTGTGCTAGCGCTa < 4:82252/147‑1 (MQ=255)
cATCACCTGAACCCCGACGCCATCCGCTGGGAGCTGCACCGTGTGTGGGTGGT‑GAGGCGACGCTGAAGAATGGCCAGCGCCATGTGATGCCGCGTAGCACCTACTACCTCGACGAAGACACCTGGGCTGCCGTGCTGGGCGAGCGCTAt < 2:242784/149‑1 (MQ=255)
aTCACCTGAACCCCGACGCCATCCGCTGGGAGCAGCACCGTGTGTGGGGGGTGGAGGCGACGCTGAAGAATGGCCAGCGCCATGTGATGACGCGTAGCACCTACTACCTCGACGAAGCCACCTGCGCTGCCGTGCTGGGCGAGCGCTAt > 1:342021/1‑149 (MQ=255)
cTGAACCCCGACGCCATCCGCTGGGAGCAGCACCGTGTGTGGGTGGTGGAGGCGACGCTGAAGAATGGCCAGCGCCATGTGATGCCGCGTAGCACCTACTACCTCGACGAAGACACCTGGGCTGCCGTGCTGGGCGAGCGCTATGACGc < 1:170524/149‑1 (MQ=255)
gAACCCCGACGCCATCCGCTGGGAGCAGCACCGTGTGTGGGTGGTGGAGGCGACGCTGAAGAATGGCCAGCGCCATGTGATGCCGCGTAGCACCTACTACCTCGACGAAGACACCTGGGCTGCCGTGCTGGGCGAGCGCTATGACGccc > 6:294981/1‑149 (MQ=255)
cATCCGCTGGGAGCAGCACCGTGTGTGGGTGGTGGAGGCGACGCTGAAGAATGGCCAGCGCCATGTGATGCCGCGTAGCACCTACTACCTCGACGAAGACACCTGGGCTGCCGTGCTGGGCGAGCGCTATGACGCCCGCAACCAGTTgg < 4:336547/149‑1 (MQ=255)
aTCCGCTGGGAGCAGCACCGTGTGTGGGTGGTGGAGGCGACGCTGAAGAATGGCCAGCGCCATGTGATGCCGCGTAGCACCTACTACCTCGACGAAGACACCTGGGCTGCCGTGCTGGGCGAGCGCTATGACGCCCGCAACCAGTTGGc > 6:193556/1‑149 (MQ=255)
aTCCGCTGGGAGCAGCACCGTGTGTGGGTGGTGGAGGCGACGCTGAAGAATGGCCAGCGCCATGTGATGCCGCGTAGCACCTACTACCTCGACGAAGACACCTGGGCTGCCGTGCTGGGCGAGCGCTATGACGCCCGCAACCAGTTGGc > 1:3197/1‑149 (MQ=255)
cGCTGGGAGCAGCACCGTGTGTGGGTGGTGGAGGCGACGCTGAAGAATGGCCAGCGCCATGTGATGCCGCGTAGCACCTACTACCTCGACGAAGACACCTGGGCTGCCGTGCTGGGCGAGCGCTATGACGCCCGCACCCAGTTGGcc > 2:74874/1‑147 (MQ=255)
cTGGGAGCTGCACCGTGTGTGGGTGGTGGAGGCGACGCTGAAGAATGGCCAGCGCCATGTGATGCCGCGTAGCACCTACTACCTCGACGAAGACACCTGGGCTGCCGTGCTGGGCGAGCGCTATGACGCCCGCAACCAGTTGGCCAAgg > 6:358667/1‑149 (MQ=255)
cTGGGAGCAGCACCATGTGTGGGTGGTGGAGGCGACGCTGAAGAATGGCCAGCGCCATGTGATGCCGCGTAGCACCTACTACCTCGACGAAGACACCTGGGCTGCCGTGCTGGGCGAGCGCTATGACGCCCGCAACCAGTTGGCCAAg < 8:186804/148‑1 (MQ=255)
gAGCAGCACCGTGTGTGGGTGGTGGAGGCGACGCTGAAGAATGGCCAGCGCCATGTGATGCCGCGTAGCACCTACTACCTCGACGAAGACACCTGGGCTGCCGTGCTGGGCGAGCGCTATGACGCCCGCAACCAGTTGGCCAAggtggt < 4:120045/149‑1 (MQ=255)
tGCACCGTGTGTGGGTGGTGGAGGCGACGCTGAAGAATGGCCAGCGCCATGTGATGCCGCGTAGCACCTACTACCTCGACGAAGACACCTGGGCTGCCGTGCTGGGCGAGCGCTATGACGCCCGCAACCAGTTGGCCAAGGTGGTCTgg > 6:123060/1‑149 (MQ=255)
|
GTCGCCTCGACCGCTTCGAGTGGAAGCTGGTGGGCAAGAAGGAGATGTACATCCCCTACAACGCCAACAAGGTGTTCACCGCCAGCAACGCCGAGGCGCTGCTGGCCCCCCATCACCTGAACCCCGACGCCATCCGCTGGGAGCTGCACCGTGTGTGGGTGGTGGAGGCGACGCTGAAGAATGGCCAGCGCCATGTGATGCCGCGTAGCACCTACTACCTCGACGAAGACACCTGGGCTGCCGTGCTGGGCGAGCGCTATGACGCCCGCAACCAGTTGGCCAAGGTGGTCTGG > NC_002947_CJ‑RC/3631993‑3632285
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
BRESEQ :: bam2aln output
CAACGGTCGCCTCGACCGCTTCGAGTGGAAGCTGGTGGGCAAGAAGGAGATGTACATCCCCTACAACGCCAACAAGGTGTTCACCGCCAGCAACGCCGAGGCGCTGCTGGCCCCCCATCACCTGAACCCCGACGCCATCCGCTGGGAGCTGCACCGTGTGTGGGTGGTGGAGGCGACGCTGAAGAATGGCCAGCGCCATGTGATGCCGCGTAGCACCTACTACCTCGACGAAGACACCTGGGCTGCCGTGCTGGGCGAGCGCTATGACGCCCGCAACCAGTTGGCCAAGGTGGTCTGGAC > NC_002947_CJ‑RC/3631988‑3632287
|
CAACGGTCGCCTCGACCGCTTCGAGTTGAAGCTGGTGGGCAAGAAGGAGATGTACATCCCCTACAACGCCAACTAGGTGTTCACCGCCAGCAACGCCGAGGCGCTGGTGGCCCCCGATCACCTGAACCCCGACGCCATCCGCTGGTAGCAG < NB501016:282:H2V7GAFX2:4:11408:9778:2475/151‑1 (MQ=60)
GGTCGCCTCGACCGCTTCGAGTGGAAGCTGGTGGGCAAGAAGGAGATGTACATCCCCTACAACGCCAACAAGGTGTTCACCGCCAGCAACGCCGAGGCGCTGCTGGCCCCCCATCACCTGAACCCCGACGCCATCCGCTGGGAGCAGCACC > NB501016:282:H2V7GAFX2:1:21211:5101:19991/1‑151 (MQ=60)
CGCCTCGACCGCTTCGAGTGGAAGCTGGTGGGCAAGAAGGAGATGTACATCCCCTACAACGCCAACAAGGTGTTCACCGCCAGCAACGCCGAGGCGCTGCTGGCCCCCCATCACCTGAACCCCGACGCCATCCGCTGGGAGCTGCACCGTG < NB501016:282:H2V7GAFX2:4:21412:15091:11668/151‑1 (MQ=60)
CCTCGACCGCTTCGAGTGGAAGCTGGTGGGCAAGAAGGAGATGTACATCCCCTACAACGCCAACAAGGTGTTCACCGCCAGCAACGCCGAGGCGCTGCTGGCCCCCCATCACCTGAACCCCGACGCCATCCGCTGGGAGCAGCACCGTGTG < NB501016:282:H2V7GAFX2:2:21106:16308:10478/151‑1 (MQ=60)
GACCGCTTCGAGTGGAAGCTGGTGGGCAAGAAGGAGATGTACATCCCCTACAACGCCAACAAGGTGTTCACCGCCAGCAACGCCGAGGCGCTGCTGGCCCCCCATCACCTGAACCCCGACGCCATCCGCTGGGAGCTGCACCGTGTGTGGG > NB501016:282:H2V7GAFX2:4:11410:26001:9178/1‑151 (MQ=60)
GAGTGGAAGCTGGTGGGCAAGAAGGAGATGTACATCCCCTACAACGCCAACAAGGTGTTCACCGCCAGCAACGCCGAGGCGCTGCTGGCCCCCCATCACCTGAACCCCGTCGCCATCCGCTGGGAGCAGCACCGTGTGTGGGTGGTGGAGG < NB501016:282:H2V7GAFX2:4:11409:4818:12695/151‑1 (MQ=60)
AGTGGAAGCTGGTGGGCAAGAAGGAGATGTACATCCCCTACAACGCCAACAAGGTGTTCACCGCCAGCAACGCCGAGGCGCTGCTGGCCCCCCATCACCTGAACCCCGACGCCATCCGCTGGGAGCAGCACCGTGTGTGGGTGGTGGAGGG > NB501016:282:H2V7GAFX2:2:21311:10525:1435/1‑151 (MQ=60)
GTGGAAGCTGGTGGGCAAGAAGGAGATGTACATCCCCTACAACGCCAACAAGGTGTTCACCGCCAGCAACGCCGAGGCGCTGCTGGCCCCCCATCACCTGAACCCCGACGCCATCCGCTGGGAGCAGCACCGTGTGTGGGTGGTGGAGGCG < NB501016:282:H2V7GAFX2:1:21309:13486:8015/151‑1 (MQ=60)
GGTGGGCAAGAAGGAGATGTACATCCCCTACAACGCCAACAAGGTGTTCACCGCCAGCAACGCCGAGGCGCTGCTGGCCCCCCATCACCTGAACCCCGACGCCATCCGCTGGGAGCAGCACCGTGTGTGGGTGGTGGAGGCGACGCTGAAG < NB501016:282:H2V7GAFX2:2:11101:3703:10151/151‑1 (MQ=60)
GGTGCGCAAGAAGGAGATGTACATCCCCTACAACGCCAACAAGGTGTTCACCGCCAGCAACGCCGAGGCGCTGCTGGCCCCCCATCACCTGAACCCCGACGCCATCCGCTGGGAGCAGCACCGTGTGTGGGTGGTGGAGGCGACGCTGA < NB501016:282:H2V7GAFX2:1:11308:12962:19453/149‑1 (MQ=60)
GCAAGAAGGAGATGTACATCCCCTACAACGCCAACAAGGTGTTCACCGCCAGCAACGCCGAGGCGCTGCTGGCCCCCCATCACCTGAACCCCGACGCCATCCGCTGGGAGCAGCACCGTGTGTGGGTGGTGGAGGCGACGCTGAAGAATGG < NB501016:282:H2V7GAFX2:4:21412:20781:4953/151‑1 (MQ=60)
AAGAAGGAGATGTACATCCCCTACAACGCCAACAAGGTGTTCACCGCCAGCAACGCCGAGGCGCTGCTGGCCCCCCATCACCTGAACCCCGACGCCATCCGCTGGGAGCAGCACCGTGTGTGGGTGGTGGAGGCGACGCTGAAGAATGGCC < NB501016:282:H2V7GAFX2:2:21202:26409:12705/151‑1 (MQ=60)
ATGTACATCCCCTACAACGCCAACAAGGTGTTCACCGCCAGCAACGCCGAGGCGCTGCTGGCCCCCCATCACCTGAACCCCGACGCCATCCGCTGGGAGCAGCACCGTGTGTGGGTGGTGGAGGCGACGCTGAAGAATGGCCAGCGCCATG < NB501016:282:H2V7GAFX2:1:21204:7744:19274/151‑1 (MQ=60)
ATGTACATCCCCTACAACGCCAACAAGGTGTTCACCGCCAGCAACGCCGAGGCGCTGCTGGCCCCCCATCACCTGAACCCCGACGCCATCCGCTGGGAGCAGCACCGTGTGTGGGTGGTGGAGGCGACGCTGAAGAATGGCCAGCGCCATG < NB501016:282:H2V7GAFX2:3:21510:9707:3714/151‑1 (MQ=60)
TGTACATCCCCTACAACGCCAACAAGGTGTTCACCGCCAGCAACGCCGAGGCGCTGCTGGCCCCCCATCACCTGAACCCCGACGCCATCCGCTGGGAGCAGCACCGTGTGTGGGTGGTGGAGGCGACGCTGAAGAATGGCCAGCGCCATGT > NB501016:282:H2V7GAFX2:2:21212:12684:11469/1‑151 (MQ=60)
ACATCCCCTACAACGCCAACAAGGTGTTCACCGCCAGCAACGCCGAGGCGCTGCTGGCCCCCCATCACCTGAACCCCGACGCCATCCGCTGGGAGCAGCACCGTGTGTGGGTGGTGGAGGCGACGCTGAAGAATGGCCAGCGCCATGTGAT > NB501016:282:H2V7GAFX2:2:11205:2497:2367/1‑151 (MQ=60)
ACATCCCCTACAACGCCAACAAGGTGTTCACCGCCAGCAACGCCGAGGCGCTGCTGGCCCCCCATCACCTGAACCCCGACGCCATCCGCTGGGAGCAGCACCGTGTGTGGGTGGTGGAGGCGACGCTGAAGAATGGCCAGCGCCATGTGAT < NB501016:282:H2V7GAFX2:3:11611:5599:5842/151‑1 (MQ=60)
CATCCCCTACAACGCCAACAAGGTGTTCACCGCCAGCAACGCCGAGGCGCTGCTGGCCCCCCATCACCTGAACCCCGACGCCATCCGCTGGGAGCAGCACCGTGTGTGGGTGGTGGAGGCGACGCTGAAGAATGGCCAGCGCCATGTGATG < NB501016:282:H2V7GAFX2:3:11401:1698:1274/151‑1 (MQ=60)
TCCCCTACAACGCCAACAAGGTGTTCACCGCCAGCAACGCCGAGGCGCTGCTGGCCCCCCATCACCTGAACCCCGACGCCATCCGCTGGGAGCAGCACCGTGTGTGGGTGGTGGAGGCGACGCTGAAGAATGGCCAGCGCCATGTGATGCC > NB501016:282:H2V7GAFX2:3:11405:17228:1625/1‑151 (MQ=60)
AACGCCAACAAGGTGTTCACCGCCAGCAACGCCGAGGCGCTGCTGGCCCCCCATCACCTGAACCCCGACGCCATCCGCTGGGAGCAGCACCGTGTGTGGGTGGTGGAGGCGACGCTGAAGAATGGCCAGCGCCATGTGATGCCGCGTAGCA < NB501016:282:H2V7GAFX2:3:21606:13547:18875/151‑1 (MQ=60)
CCAACAAGGTGTTCACCGCCAGCAACGCCGAGGCGCTGCTGGCCCCCCATCACCTGAACCCCGACGCCATCCGCTGGGAGCAGCACCGTGTGTGGGTGGTGGAGGCGACGCTGAAGAATGGCCAGCGCCATGTGATGCCGCGTAGCACCTA < NB501016:282:H2V7GAFX2:1:21208:5702:17918/151‑1 (MQ=60)
AACAAGGTGTTCACCGCCAGCAACGCCGAGGCGCTGCTGGCCCCCCATCACCTGAACCCCGACGCCATCCGCTGGGAGCTGCACCGTGTGTGGGTGGT‑GAGGCGACGCTGAAGAATGGCCAGCGCCATGTGATGCCGCGTAGCACCTACT > NB501016:282:H2V7GAFX2:1:21110:16220:8928/1‑150 (MQ=60)
ACCGCCAGCAACGCCGAGGCGCTGCTGGCCCCCCATCACCTGAACCCCGACGCCATCCGCTGGGAGCAGCACCGTGTGTGGGTGGTGGAGGCGACGCTGAAGAATGGCCAGCGCCATGTGATGCCGCGTAGCACCTACTACCTCGACGAAG < NB501016:282:H2V7GAFX2:3:21511:14864:2998/151‑1 (MQ=60)
ACCGCCAGCAACGCCGAGGCGCTGCTGGCCCCCCATCACCTGAACCCCGACGCCATCCGCTGGGAGCAGCACCGTGTGTGGGTGGTGGAGGCGACGCTGAAGAATGGCCAGCGCCATGTGATGCCGCGTAGCACCTACTACCTCGACGA > NB501016:282:H2V7GAFX2:2:11204:6446:19124/1‑149 (MQ=60)
CGCCGAGGCGCTGCTGGCCCCCCATCACCTGAACCCCGACGCCATCCGCTGGGAGCAGCACCGTGTGTGGGTGGTGGAGGCGACGCTGAAGAATGGCCAGCGCCATGTGATGCCGCGTAGCACCTACTACCTCGACGAAGACACCTGGGCT > NB501016:282:H2V7GAFX2:3:21608:9648:5755/1‑151 (MQ=60)
CGAGGCGCTGCTGGCCCCCCATCACCTGAACCCCGACGCCATCCGCTGGGAGCAGCACCGTGTGTGGGTGGTGGAGGCGACGCTGAAGAATGGCCAGCGCCATGTGATGCCGCGTAGCACCTACTACCTCGACGAAGACACCTGGGCTGCC > NB501016:282:H2V7GAFX2:2:11110:23392:3759/1‑151 (MQ=60)
GCTGGCCCCCCATCACCTGAACCCCGACGCCATCCGCTGGGAGCAGCACCGTGTGTGGGTGGTGGAGGCGACGCTGAAGAATGGCCAGCGCCATGTGATGCCGCGTAGCACCTACTACCTCGACGAAGACACCTGGGCTGCCGTGCTGGG < NB501016:282:H2V7GAFX2:3:11605:5666:12614/150‑1 (MQ=60)
CCCCCCATCACCTGAACCCCGACGCCATCCGCTGGGAGCAGCACCGTGTGTGGGTGGTGGAGGCGACGCTGAAGAATGGCCAGCGCCATGTGATGCCGCGTAGCACCTACTACCTCGACGAAGACACCTGGGCTGCCGTGCTGGGCGAGCG > NB501016:282:H2V7GAFX2:3:11607:15171:19725/1‑151 (MQ=60)
CCCCATCACCTGAACCCCGACGCCATCCGCTGGGAGCAGCACCGTGTGTGGGTGGTGGAGGCGACGCTGAAGAATGGCCAGCGCCATGTGATGCCGCGTAGCACCTACTACCTCGACGAAGACACCTGGGCTGCCGTGCTGGGCGAGCGCT > NB501016:282:H2V7GAFX2:1:21103:3033:3943/1‑151 (MQ=60)
CATCACCTGAACCCCGACGCCATCCGCTGGGAGCAGCACCGTGTGTGGGGGGTGGAGGCGACGCTGAAGAATGGCCAGCGCCATGTGATGACGCGTAGCACCTACTACCTCGACGAAGCCACCTGCGCTGCCGTGCTGGGCGAGCGCTATG > NB501016:282:H2V7GAFX2:1:21306:20275:16338/1‑151 (MQ=60)
CCTGAACCCCGACGCCATCCGCTGGGAGCAGCACCGTGTGTGGGTGGTGGAGGCGACGCTGAAGAATGGCCAGCGCCATGTGATGCCGCGTAGCACCTACTACCTCGACGAAGACACCTGGGCTGCCGTGCTGGGCGAGCGCTATGACGCC < NB501016:282:H2V7GAFX2:1:11308:16870:13513/151‑1 (MQ=60)
CATCCGCTGGGAGCAGCACCGTGTGTGGGTGGTGGAGGCGACGCTGAAGAATGGCCAGCGCCATGTGATGCCGCGTAGCACCTACTACCTCGACGAAGACACCTGGGCTGCCGTGCTGGGCGAGCGCTATGACGCCCGCAACCAGTTGGCC > NB501016:282:H2V7GAFX2:1:11101:15497:12294/1‑151 (MQ=60)
AGCAGCACCGTGTGTGGGTGGTGGAGGCGACGCTGAAGAATGGCCAGCGCCATGTGATGCCGCGTAGCACCTACTACCTCGACGAAGACACCTGGGCTGCCGTGCTGGGCGAGCGCTATGACGCCCGCAACCAGTTGGCCAAGGTGGTCTG < NB501016:282:H2V7GAFX2:1:11307:12074:10586/151‑1 (MQ=60)
CAGCACCGTGTGTGGGTGGTGGAGGCGACGCTGAAGAATGGCCAGCGCCATGTGATGCCGCGTAGCACCTACTACCTCGACGAAGACACCTGGGCTGCCGTGCTGGGCGAGCGCTATGACGCCCGCAACCAGTTGGCCAAGGTGGTCTGGA < NB501016:282:H2V7GAFX2:1:21201:21835:5057/151‑1 (MQ=60)
GGCACCGTGTGTGGGTGGTGGAGGCGACGCTGAAGAATGGCCAGCGCCATGTGATGCCGCGTAGCACCTACTACCTCGACGAAGACACCTGGGCTGCCGTGCTGGGCGAGCGCTATGACGCCCGCAACCAGTTGGCCAAGGTGGTCTGGAC < NB501016:282:H2V7GAFX2:4:21607:10856:17093/151‑1 (MQ=60)
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CAACGGTCGCCTCGACCGCTTCGAGTGGAAGCTGGTGGGCAAGAAGGAGATGTACATCCCCTACAACGCCAACAAGGTGTTCACCGCCAGCAACGCCGAGGCGCTGCTGGCCCCCCATCACCTGAACCCCGACGCCATCCGCTGGGAGCTGCACCGTGTGTGGGTGGTGGAGGCGACGCTGAAGAATGGCCAGCGCCATGTGATGCCGCGTAGCACCTACTACCTCGACGAAGACACCTGGGCTGCCGTGCTGGGCGAGCGCTATGACGCCCGCAACCAGTTGGCCAAGGTGGTCTGGAC > NC_002947_CJ‑RC/3631988‑3632287
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| Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 0 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
