Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A2 F43 I1 R1
|
60 |
76.0 |
3234326 |
98.3% |
3179342 |
146.8 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| RA |
NC_002947_CJ‑RC |
278,744 |
+A |
intergenic (‑239/+75) |
PP_0224 ← / ← sctC |
DszC family monooxygenase/sulfur compound ABC transporter ATP‑binding protein |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NC_002947_CJ‑RC | 278,742 | 1 | . | A | 87.0%
| 131.9
/ 14.3
| 46 | intergenic (‑237/+77) | PP_0224/sctC | DszC family monooxygenase/sulfur compound ABC transporter ATP‑binding protein |
| Reads supporting (aligned to +/- strand): ref base . (3/3); new base A (9/31); total (12/34) |
| Fisher's exact test for biased strand distribution p-value = 1.73e-01 |
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 |
TGTCGCTACAGCTGATCGCGACAGACGTGTGCTGGTCCGGTGGTCCGGTATATATACCCTAATGATTTATAAAATTTTTATGAACTAACTTTTTGGAATATTTATAGAAGGGGGATTTGTTACAGAGGTGCCGGGCTCTTCGC‑GG‑G‑T‑AA‑CCCGCTCCTACACACATGCCTCAAGATCTGTGCACTGTAGGAGC‑GGGTTTA‑CCCGCGAAAGGGCCGGAACAGGTTTACTCGGAGGCCGCAGTCCCGAGGAACTTGCGCAAGAACTGCCGCGTACGCT > NC_002947_CJ‑RC/278596‑278871
|
tGTCGCTACAGCTGATCGCGACAGACGTGTGCTGGTCCGGTGGTCCGGTATATATACCCTAATGATTTATAAAATTTTTATGAACTAACTTTTTGGAATATTTATAGAAGGGGGATTTGTTACAGAGGTGCCGGGCTCTTCGC‑GG‑G‑T‑aa < 2:289849/149‑1 (MQ=255)
tCGCTACAGCTGATCGCGACAGACGTGTGCTGGTCCGGTGGTCCGGTATATATACCCTAATGATTTATAAAATTTTTATGAACTAACTTTTTGGAATATTTATAGAAGGGGGATTTGTTACAGAGGTGCCGGGCTCTTCGC‑GG‑G‑T‑aaac < 3:256537/149‑3 (MQ=255)
tCGCTACAGCTGATCGCGACAGACGTGTGCTGGTCCGGTGGTCCGGTATATATACACTAATGATTTATAAAATTTTTATGAACTAACTTTTTGGAATATTTATAGAAGGGGGATTTGTTACAGAGGTGCCGGGCTCTTCGC‑GG‑G‑T‑aaa < 2:291199/148‑2 (MQ=255)
cGCTACAGCTGATCGCGACAGACGTGTGCTGGTCCGGTGGTCCGGTATATATACCCTAATGATTTATAAAATTTTTATGAACTAACTTTTTGGAATATTTATAGAAGGGGGATTTGTTACAGAGGTGCCGGGCTCTTCGC‑GG‑G‑T‑AA‑acc > 6:400642/1‑149 (MQ=255)
aGCTGATCGCGACAGACGTGTGCTGGTCCGGTGGTCCGGTATATATACCCTAATGATTTATAAAATTTTTATGAACTAACTTTTTGGAATATTTATAGAAGGGGGATTTGTTACAGAGGTGCCGGGCTCTTCGC‑GG‑G‑TAAA‑CCCGCTcc < 8:189817/149‑1 (MQ=255)
aGCTGATCGCGACAGACGTGTGCTGGTCCGGTGGTCCGGTATATATACCCTAATGATTTATAAAATTTTTATGAACTAACTTTTTGGAATATTTATAGAAGGGGGATTTGTTACAGAGGTGCCGGGCTCTTCGC‑GG‑G‑TAAA‑CCCGCTcc < 3:170974/149‑1 (MQ=255)
cTGATCGCGACAGACGTGTGCTGGTCCGGTGGTCCGGTATATATACCCTAATGATTTATAAAATTTTTATGAACTAACTTTTTGGAATATTTATAGAAGGGGGATTTGTTACAGAGGTGCCGGGCTCTTCGC‑GG‑G‑TAAA‑CCCGCTCCTa < 5:400642/149‑1 (MQ=255)
aTCGCGAGAGAAGTGTGATGGTCCGGTTGTCCGGTATATATACCCTAATGATTTATAAAATTTTTATGAACTAACTTTTTGTAATATTTATAGAAGGGTGATTTGTTACAGAGGTGCCTTGCTCTTCGC‑TG‑G‑TAAA‑CCCGCTCCTaca < 3:53180/148‑1 (MQ=255)
aTCGCGACAGACGTGTGCTGGTCCGGTGGTCCGGTATATATACCCTAATGATTTATAAAATTTTTATGAACTAACTTTTTGGAATATTTATAGAAGGGGGATTTGTTACAGAGGTGCCGGGCTCTTCGC‑GG‑G‑TAAA‑CCCGCTCCTacac < 7:51276/149‑1 (MQ=255)
aTCGCGACAGACGTGTGCTGGTCCGGTGGTCCGGTATATATACCCTAATGATTTATAAAATTTTTATGAACTAACTTTTTGGAATATTTATAGAAGGGGGATTTGTTACAGAGGTGCCGGGCTCTTCGC‑GG‑G‑TAAA‑CCCGCTCCTacac < 3:292411/149‑1 (MQ=255)
aTCGCGACAGACGTGTGCTGGTCCGGTGGTCCGGTATATATACCCTAATGATTTATAAAATTTTTATGAACTAACTTTTTGGAATATTTATAGAAGGGGGATTTGTTACAGAGGTGCCGGGCTCTTCGC‑GG‑G‑TAAA‑CCCGCTCCTaca < 8:191228/148‑1 (MQ=255)
aTCGCGACAGACGTGTGCTGGTCCGGTGGTCCGGTATATATACCCTAATGATTTATAAAATTTTTATGAACTAACTTTTTGGAATATTTATAGAAGGGGGATTTGTTACAGAGGTGCCGGGCTCTTCGC‑GG‑G‑TAAA‑CCCGCTCCTaca < 3:74378/148‑1 (MQ=255)
gcgACAGACGTGTGCTGGTCCGGTGGTCCGGTATATATACCCTAATGATTTATAAAATTTTTATGAACTAACTTTTTGGAATATTTATAGAAGGGGGATTTGTTACAGAGGTGCCGGGCTCTTCGC‑GG‑G‑TAAA‑CCCGCTCCTAcacaca > 2:174410/1‑149 (MQ=255)
cgACAGACGTGTGCTGGTCCGGTTGTCCGGTATATATACCCTAATGATTTATAAAATTTTTATGAACTAACTTTTTGGAATATTTATAGAAGGGGGATTTGTTACAGAGGTGCCGGGCTCTTCGC‑GG‑G‑TAAA‑CCCGCTCCTACACACAt < 3:281078/149‑1 (MQ=255)
cgACAGACGTGTGCTGGTCCGGTGGTCCGGTATATATACCCTAATGATTTATAAAATTTTTATGAACTAACTTTTTGGAATATTTATAGAAGGGGGATTTGTTACAGAGGTGCCGGGCTCTTCGC‑GG‑G‑TAAA‑CCCGCTCCTACACACAt < 8:259164/149‑1 (MQ=255)
aCAGACGTGTGCTGGTCCGGTGGTCCGGTATATATACCCTAATGATTTATAAAATTTTTATGAACTAACTTTTTGGAATATTTATAGAAGGGGGATTTGTTACAGAGGTGCCGGGCTCTTCGC‑GG‑G‑TAAA‑CCCGCTCCTACACACATGc < 1:394644/149‑1 (MQ=255)
gACGTGTGCTGGTCCGGTGGTCCGGTATATATACCCTAATGATTTATAAAATTTTTATGAACTAACTTTTTGGAATATTTATAGAAGGGGGATTTGTTACAGAGGTGCCGGGCTCTTCGC‑GG‑G‑TAAA‑CCCGCTCCTACACACATGCCTc < 2:66561/149‑1 (MQ=255)
gtgCTGGTCCGGTGGTCCGGTATATATACCCTAATGATTTATAAAATTTTTATGAACTAACTTTTTGGAATATTTATAGAAGGGGGATTTGTTACAGAGGTGCCGGGCTCTTCGC‑GG‑G‑TAAA‑CCCGCTCCTACACACATGCCTc > 7:230112/1‑144 (MQ=255)
cTGGTCCGGTGGTCCGGTATATATACCCTAATGATTTATAAAATTTTTATGAACTAACTTTTTGGAATATTTATAGAAGGGGGATTTGTTACAGAGGTGCCGGGCTCTTCGC‑GG‑G‑TAAA‑CCCGCTCCTACACACATGCCTCAAGATCt < 2:72883/148‑1 (MQ=255)
cTGGTCCGGTGGTCCGGTATATATACCCTAATGATTTATAAAATTTTTATGAACTAACTTTTTGGAATATTTATAGAAGGGGGATTTGTTACAGAGGTGCCGGGCTCTTCGC‑GG‑G‑TAAA‑CCCGCTCCTACACACATGCCTCAAGATCt < 8:182764/148‑1 (MQ=255)
tggtccggtggtccggTATATATACCCTAATGATTTATAAAATTTTTATGAACTAACTTTTTGGAATATTTATAGAAGGGGGATTTGTTACAGAGGTGCCGGGCTCTTCGC‑GG‑G‑TAAA‑CCCGCTCCTACACACATGCCTCAAGATCtgt > 4:244502/1‑149 (MQ=255)
gtccggtggtccggtATATATACCCTAATGATTTATAAAATTTTTATGAACTAACTTTTTGGAATATTTATAGAAGGGGGATTTGTTACAGAGGTGCCGGGCTCTTCGC‑GG‑G‑TAAA‑CCCGCTCCTACACACATGCCTCAAGATCtgt < 3:275987/147‑1 (MQ=255)
tccggtggtccggtATATATACCCTAATGATTTATAAAATTTTTATGAACTAACTTTTTGGAATATTTATAGAAGGGGGATTTGTTACAGAGGTGCCGGGCTCTTCGC‑GG‑G‑TAAA‑CCCGCTCCTACACACATGCCTCAAGATCTGTGCa < 3:293281/149‑1 (MQ=255)
gtggtccggtATATATACCCTAATGATTTATAAAATTTTTATGAACTAACTTTTTGGAATATTTATAGAAGGGGGATTTGTTACAGAGGTGCCGGGCTCTTCGC‑GG‑G‑TAAA‑CCCGCTCCTACACACATGCCTCAAGATCTGTGCACTGt < 1:56815/149‑1 (MQ=255)
tggtccggtATATATACCCTAATGATTTATAAAATTTTTATGAACTAACTTTTTGGAATATTTATAGTAGGGGGATTTGTTACAGAGGTGCCGGGCTCTTCGC‑GG‑G‑TAAA‑CCCGCTCCTACACACATGCCTCAAGATCTGTGCACTGTa < 7:338637/149‑1 (MQ=255)
tggtccggtATATATACCCTAATGATTTATAAAATTTTTATGAACTAACTTTTTGGAATATTTATAGAAGGGGGATTTGTTACAGAGGTGCCGGGCTCTTCGC‑GG‑G‑TAAA‑CCCGCTCCTACACACATGCCTCAAGATCTGTGCACTGTa < 4:55057/149‑1 (MQ=255)
tccggtATATATACCCTAATGATTTATAAAATTTTTATGAACTAACTTTTTGGAATATTTATAGAAGGGGGATTTGTTACAGAGGTGCCGGGCTCTTCGC‑GG‑G‑TAAA‑CCCGCTCCTACACACATGCCTCAAGATCtgtg > 3:312607/1‑139 (MQ=255)
tccggtATATATACCCTAATGATTTATAAAATTTTTATGAACTAACTTTTTGGAATATTTATAGAAGGGGGATTTGTTACAGAGGTGCCGGGCTCTTCGC‑GG‑G‑TAAA‑CCCGCTCCTACACACATGCCTCAAGATCtgtg < 4:312607/139‑1 (MQ=255)
tccggtATATATACCCTAATGATTTATAAAATTTTTATGAACTAACTTTTTGGAATATTTATAGAAGGGGGATTTGTTACAGAGGTGCCGGGCTCTTCGC‑GG‑G‑TAAA‑CCCGCTCCTACACACATGCCTCAAGATCTGTGCACTGTAGGa < 4:96149/149‑1 (MQ=255)
ggtATATATACCCTAATGATTTATAAAATTTTTATGAACTAACTTTTTGGAATATTTATAGAAGGGGGATTTGTTACAGAGGTGCCGGGCTCTTCGC‑GG‑G‑TAAA‑CCCGCTCCTACACACATGCCTCAAGATCTGTGCACTGTAGGAGC‑g < 8:230112/149‑1 (MQ=255)
gtATATATACCCTAATGATTTATAAAATTTTTATGAACTAACTTTTTGGAATATTTATAGAAGGGGGATTTGTTACAGAGGTGCCGGGCTCTTCGC‑GG‑G‑TAAA‑CCCGCTCCTACACACATGCCTCAAGATCTGTGCACTGTAGGAGC‑gg < 3:244502/149‑1 (MQ=255)
gtATATATACCCTAATGATTTATAAAATTTTTATGAACTAACTTTTTGGAATATTTATAGAAGGGGGATTTGTTACAGAGGTGCCGGGCTCTTCGC‑GG‑G‑TAAA‑CCCGCTCCTACACACATGCCTCAAGATCTGTGCACTGTAGGAGC‑gg < 1:174410/149‑1 (MQ=255)
gtATATATACCCTAATGATTTATAAAATTTTTATGAACTAACTTTTTGGAATATTTATAGAAGGGGGATTTGTTACAGAGGTGCCGGGCTCTTCGC‑GG‑G‑TAAA‑CCCGCTCCTACACACATGCCTCAAGATCTGTGCACTGTAGGAGC‑gg < 1:137693/149‑1 (MQ=255)
tatatataCCCTAATGATTTATAAAATTTTTATGAACTAACTTTTTGGAATATTTATAGAAGGGGGATTTGTTACAGAGGTGCCGGGCTCTTCGC‑GG‑G‑TAAA‑CCCGCTCCTACACACATGCCTCAAGATCTGTGCACTGTAGGAGC‑ggg < 8:335064/149‑1 (MQ=255)
tataCCCTAATGATTTATAAAATTTTTATGAACTAACTTTTTGGAATATTTATAGAAGGGGGATTTGTTACAGAGGTGCCGGGCTCTTCGC‑GG‑G‑TAAA‑CCCGCTCCTACACACATGCCTCAAGATCTGTGCACTGTAGGAGC‑GGGTTTa < 8:407390/149‑1 (MQ=255)
taCCCTAATGATTTATAAAATTTTTATGAACTAACTTTTTGGAATATTTATAGAAGGGGGATTTGTTACAGAGGTGCCGGGCTCTTCGC‑GG‑G‑TAAA‑CCCGCTCCTACACACATGCCTCAAGATCTGTGCACTGTAGGAGC‑GGGTTTA‑cc < 5:186919/149‑1 (MQ=255)
cccTAATGATTTATAAAATTTTTATGAACTAACTTTTTGGAATATTTATAGAAGGGGGATTTGTTACAGAGGTGCCGGGCTCTTCGC‑GG‑G‑TAAA‑CCCGCTCCTACACACATGCCTCAAGATCTGTGCACTGTAGGAGC‑GGGTTTA‑CCcg < 4:311812/149‑1 (MQ=255)
ccTAATGATTTATAAAATTTTTATGAACTAACTTTTTGGAATATTTATAGAAGGGGGATTTGTTACAGAGGTGCCGGGCTCTTCGC‑GG‑G‑TAAA‑CCCGCTCCTACACACATGCCTCAAGATCTGTGCACTGTAGGAGC‑GGGTTTA‑CCcgc < 4:284367/149‑1 (MQ=255)
ccTAATGATTTATAAAATTTTTATGAACTAACTTTTTGGAATATTTATAGAAGGGGGATTTGTTACAGAGGTGCCGGGCTCTTCGC‑GG‑G‑TAAA‑CCCGCTCCTACACACATGCCTCAAGATCTGTGCACTGTAGGAGC‑GGGTTTA‑CCcgc < 2:56264/149‑1 (MQ=255)
ccTAATGATTTATAAAATTTTTATGAACTAACTTTTTGGAATATTTATAGAAGGGGGATTTGTTACAGAGGTGCCGGGCTCTTCGC‑GG‑G‑TAAA‑ACCGCACCAACACACATGGCTCAAGATAGGTGCACTGTAGGAGC‑GGGTTTT‑ACcgc > 2:224020/1‑149 (MQ=255)
tAATGATTTATAAAATTTTTATGAACTAACTTTTTGGAATATTTATAGAAGGGGGATTTGTTACAGAGGTGCCGGGCTCTTCGC‑GG‑G‑TAAA‑CCCGCTCCAACACACATGCCTCAATATAGGTGGACAGTAGGAGC‑GGGTTTA‑CCcgcg > 6:366517/1‑148 (MQ=255)
aaaaTTTTTATGAACTAACTTTTTGGAATATTTATAGAAGGGGGATTTGTTACAGAGGTGCCGGGCTCTTCGC‑GG‑G‑TAAA‑CCCGCTCCTACACACATGCCTCAAGATCTGTGGACGGTAGGAGC‑GGGTTTA‑CCCGCGAAAGGGCCGGaa > 2:235818/1‑149 (MQ=255)
actaactTTTTGGAATATTTATAGAAGGGGGATTTGTTACAGAGGTGCCGGGCTCTTCGC‑GG‑GTT‑AA‑ACCCCACCAACACACAAGCCGCAAGAAGTGTTGACAGTAGGGGCGGGGTTTA‑CCGCCGAAAGGGCCGGACAGGGTTTaaggg > 6:390863/1‑145 (MQ=255)
tttttGGAATATTTATAGAAGGGGGATTTGTTACAGAGGTGCCGGGCTCTTCGC‑GG‑G‑TAAA‑ACCGCGCAGAAACACATGGCGCAAGAGATGGGGACTGGTGGGGC‑GGGGTTA‑GCCGCGCAATGGGCGGTCCAGGGTTTATAGGGGGCCg > 8:332673/1‑149 (MQ=255)
ttttGGAATATTTATAGAAGGGGGATTTGTTACAGAGGTGCCGGGCTCTTCGC‑GG‑G‑TAAA‑CCCTCTCATACACACATGCCTCAAGATCtgt > 6:400338/1‑91 (MQ=255)
tacgggggTTTTGTAACCGCGGGCCCGGGCTCTGCGC‑GG‑T‑A‑AACCCCGCCCCAACACACATGCCTCACCATCTGGCCACTGTCGGCGG‑GGTTTAA‑CCCGCGAAAGGGCCGGAACAGGTTTACTCGGAGGCCGCAGTCCCGAGGAACtt < 6:320102/145‑1 (MQ=255)
ggggATTTGTTACAGAGGTGCCGGGCTCTTCGCGGG‑G‑T‑AA‑ACCCCGGCGGCACCCCATCCGCAAGATCTGTGGCCAGTAGGGGCGGGGTTTA‑CCCCGCAACGGGCGGGAACCGTTTTA‑TGGGAGGCCCCCGGCCCGCGGGACATgcgc > 2:27151/1‑148 (MQ=255)
tggTGCGGGGCTCTTCGG‑GGTA‑A‑AA‑CCCGCTCAAACACACAGCCCTAAATTTCTGTGCATTTTCGGCG‑‑GGGTTTACCCCGCGAAAGGGCCGGAACAGGTTTACTCGGAGGCCGCAGTCCCGAGGAACTTGCGCAAGAACTGCCGCGt < 6:242803/146‑1 (MQ=255)
tGCCGGGCTCTGCGC‑TG‑C‑A‑AACCCCGCTCCTACACCCTCGCCTCAACATCTGTGCACTGTAGCTGG‑GGTTTCA‑CCCGCGAAAGGGCCGGAACAGGTTTACTCGGAGGCCGCAGTCCCGAGGAACTTGCGCAAGAACTGCCGCGTACGct < 7:508/149‑1 (MQ=255)
|
TGTCGCTACAGCTGATCGCGACAGACGTGTGCTGGTCCGGTGGTCCGGTATATATACCCTAATGATTTATAAAATTTTTATGAACTAACTTTTTGGAATATTTATAGAAGGGGGATTTGTTACAGAGGTGCCGGGCTCTTCGC‑GG‑G‑T‑AA‑CCCGCTCCTACACACATGCCTCAAGATCTGTGCACTGTAGGAGC‑GGGTTTA‑CCCGCGAAAGGGCCGGAACAGGTTTACTCGGAGGCCGCAGTCCCGAGGAACTTGCGCAAGAACTGCCGCGTACGCT > NC_002947_CJ‑RC/278596‑278871
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
BRESEQ :: bam2aln output
GTCGCTACAGCTGATCGCGACAGACGTGTGCTGGTCCGGTGGTCCGGTATATATACCCTAATGATTTATAAAATTTTTATGAACTAACTTTTTGGAATATTTATAGAAGGGGGATTTGTTACAGAGGTGCCGGGCTCTTCGCGGG‑‑‑T‑AACCCGCTCCTACACACATGCCTCAAGATCTGTGCACTGTAGGAGCGGGTTTACCCGCGAAAGGGCCGGAACAGGTTTACTCGGAGGCC > NC_002947_CJ‑RC/278597‑278831
|
GTCGCTACAGCTGATCGCGACAGACGTGTGCTGGTCCGGTGGTCCGGTATATATACCCTAATGATTTATAAAATTTTTATGAACTAACTTTTTGGAATATTTATAGAAGGGGGATTTGTTACAGAGGTGCCGGGCTCTTCGCGGG‑‑‑T‑AAACC < NB501016:282:H2V7GAFX2:2:21110:6782:3945/151‑1 (MQ=60)
CTACAGCTGATCGCGACAGACGTGTGCTGGTCCGGTGGTCCGGTATATATACCCTAATGATTTATAAAATTTTTATGAACTAACTTTTTGGAATATTTATAGAAGGGGGATTTGTTACAGAGGTGCCGGGCTCTTCGCGGGGGTT‑AACCC > NB501016:282:H2V7GAFX2:3:11409:18672:18864/1‑150 (MQ=60)
CAGCTGATCGCGACAGACGTGTGCTGGTCCGGTGGTCCGGTATATATACCCTAATGATTTATAAAATTTTTATGAACTAACTTTTTGGAATATTTATAGAAGGGGGATTTGTTACAGAGGTGCCGGGCTCTTCGCGGG‑‑‑TAAACCCGCTCCT < NB501016:282:H2V7GAFX2:2:11306:16977:16764/151‑1 (MQ=60)
GCTGATCGCGACAGACGTGTGCTGGTCCGGTGGTCCGGTATATATACCCTAATGATTTATAAAATTTTTATGAACTAACTTTTTGGAATATTTATAGAAGGGGGATTTGTTACAGAGGTGCCGGGCTCTTCGCGGG‑‑‑TAAACCCGCTCCTAC < NB501016:282:H2V7GAFX2:3:21612:7838:16677/151‑1 (MQ=60)
GATCGCGAGAGAAGTGTGATGGTCCGGTTGTCCGGTATATATACCCTAATGATTTATAAAATTTTTATGAACTAACTTTTTGTAATATTTATAGAAGGGTGATTTGTTACAGAGGTGCCTTGCTCTTCGCTGG‑‑‑TAAACCCGCTCCTACAC < NB501016:282:H2V7GAFX2:2:11110:16060:12309/150‑1 (MQ=60)
GATCGCGACAGACGTGTGCTGGTCCGGTGGTCCGGTATATATACCCTAATGATTTATAAAATTTTTATGAACTAACTTTTTGGAATATTTATAGAAGGGGGATTTGTTACAGAGGTGCCGGGCTCTTCGCGGG‑‑‑TAAACCCGCTCCTACACA < NB501016:282:H2V7GAFX2:4:11409:21772:13149/151‑1 (MQ=60)
GATCGCGACAGACGTGTGCTGGTCCGGTGGTCCGGTATATATACCCTAATGATTTATAAAATTTTTATGAACTAACTTTTTGGAATATTTATAGAAGGGGGATTTGTTACAGAGGTGCCGGGCTCTTCGCGGG‑‑‑TAAACCCGCTCCTACACA < NB501016:282:H2V7GAFX2:2:21206:10999:10491/151‑1 (MQ=60)
GATCGCGACAGACGTGTGCTGGTCCGGTGGTCCGGTATATATACCCTAATGATTTATAAAATTTTTATGAACTAACTTTTTGGAATATTTATAGAAGGGGGATTTGTTACAGAGGTGCCGGGCTCTTCGCGGG‑‑‑TAAACCCGCTCCTACAC < NB501016:282:H2V7GAFX2:2:11202:12519:6584/150‑1 (MQ=60)
GCGACAGACGTGTGCTGGTCCGGTTGTCCGGTATATATACCCTAATGATTTATAAAATTTTTATGAACTAACTTTTTGGAATATTTATAGAAGGGGGATTTGTTACAGAGGTGCCGGGCTCTTCGCGGG‑‑‑TAAACCCGCTCCTACACACATG < NB501016:282:H2V7GAFX2:2:21204:25693:6335/151‑1 (MQ=60)
GACAGACGTGTGCTGGTCCGGTGGTCCGGTATATATACCCTAATGATTTATAAAATTTTTATGAACTAACTTTTTGGAATATTTATAGAAGGGGGATTTGTTACAGAGGTGCCGGGCTCTTCGCGGG‑‑‑TAAACCCGCTCCTACACACATGCC < NB501016:282:H2V7GAFX2:1:21311:18025:14360/151‑1 (MQ=60)
TGTGCTGGTCCGGTGGTCCGGTATATATACCCTAATGATTTATAAAATTTTTATGAACTAACTTTTTGGAATATTTATAGAAGGGGGATTTGTTACAGAGGTGCCGGGCTCTTCGCGGG‑‑‑TAAACCCGCTCCTACACACATGCCTCA > NB501016:282:H2V7GAFX2:4:21404:26401:9542/1‑146 (MQ=60)
aagacggcatacgtgatggaatctcgtgactggagttcagacgttgctcttccgatctTTTTTGGAATATTTATAGAAGGGGGATTTGTTACAGAGGTGCCGGGCTCTTCGCGGG‑‑‑TAAACCCGCTCCTACACACATGCCTCAAGATCTGTG < NB501016:282:H2V7GAFX2:3:21612:3629:15712/93‑1 (MQ=60)
GGTCCGGTGGTCCGGTATATATACCCTAATGATTTATAAAATTTTTATGAACTAACTTTTTGGAATATTTATAGAAGGGGGATTTGTTACAGAGGTGCCGGGCTCTTCGCGGG‑‑‑TAAACCCGCTCCTACACACATGCCTCAAGATCTGTG < NB501016:282:H2V7GAFX2:2:21202:10358:13254/149‑1 (MQ=60)
GTCCGGTGGTCCGGTATATATACCCTAATGATTTATAAAATTTTTATGAACTAACTTTTTGGAATATTTATAGAAGGGGGATTTGTTACAGAGGTGCCGGGCTCTTCGCGGG‑‑‑TAAACCCGCTCCTACACACATGCCTCAAGATCTGTGCAC < NB501016:282:H2V7GAFX2:2:21206:8598:13392/151‑1 (MQ=60)
GGTGGTCCGGTATATATACCCTAATGATTTATAAAATTTTTATGAACTAACTTTTTGGAATATTTATAGAAGGGGGATTTGTTACAGAGGTGCCGGGCTCTTCGCGGG‑‑‑TAAACCCGCTCCTACACACATGCCTCAAGATCTGTGCACTGTA < NB501016:282:H2V7GAFX2:1:11110:11364:6039/151‑1 (MQ=60)
GTGGTCCGGTATATATACCCTAATGATTTATAAAATTTTTATGAACTAACTTTTTGGAATATTTATAGTAGGGGGATTTGTTACAGAGGTGCCGGGCTCTTCGCGGG‑‑‑TAAACCCGCTCCTACACACATGCCTCAAGATCTGTGCACTGTAG < NB501016:282:H2V7GAFX2:4:21510:23701:19099/151‑1 (MQ=60)
GTCCGGTATATATACCCTAATGATTTATAAAATTTTTATGAACTAACTTTTTGGAATATTTATAGAAGGGGGATTTGTTACAGAGGTGCCGGGCTCTTCGCGGG‑‑‑TAAACCCGCTCCTACACACATGCCTCAAGATCTGTGC > NB501016:282:H2V7GAFX2:2:21210:9566:2324/1‑141 (MQ=60)
GGTATATATACCCTAATGATTTATAAAATTTTTATGAACTAACTTTTTGGAATATTTATAGAAGGGGGATTTGTTACAGAGGTGCCGGGCTCTTCGCGGG‑‑‑TAAACCCGCTCCTACACACATGCCTCAAGATCTGTGCACTGTAGGAGCGGG < NB501016:282:H2V7GAFX2:2:21107:2566:18271/151‑1 (MQ=60)
GGTATATATACCCTAATGATTTATAAAATTTTTATGAACTAACTTTTTGGAATATTTATAGAAGGGGGATTTGTTACAGAGGTGCCGGGCTCTTCGCGGG‑‑‑TAAACCCGCTCCTACACACATGCCTCAAGATCTGTGCACTGTAGGAGCGGG < NB501016:282:H2V7GAFX2:1:11306:8595:17231/151‑1 (MQ=60)
GGTATATATACCCTAATGATTTATAAAATTTTTATGAACTAACTTTTTGGAATATTTATAGAAGGGGGATTTGTTACAGAGGTGCCGGGCTCTTCGCGGG‑‑‑TAAACCCGCTCCTACACACATGCCTCAAGATCTGTGCACTGTAGGAGCGGG < NB501016:282:H2V7GAFX2:1:11212:19710:4111/151‑1 (MQ=60)
ATACCCTAATGATTTATAAAATTTTTATGAACTAACTTTTTGGAATATTTATAGAAGGGGGATTTGTTACAGAGGTGCCGGGCTCTTCGCGGG‑‑‑TAAACCCGCTCCTACACACATGCCTCAAGATCTGTGCACTGTAGGAGCGGGTTTACCC < NB501016:282:H2V7GAFX2:3:11609:11145:14191/151‑1 (MQ=60)
TAACTTTTTGGAATATTTATAGAAGGGGGATTTGTTACAGAGGTGCCGGGCTCTTCGCGGG‑‑‑T‑AAaaacccaacgacaaaaatagcgaaacatttttggacgataaggtcgggtttaaacaggaaacggccggaaacaatttaatcgtggcc > NB501016:282:H2V7GAFX2:3:21512:14320:11716/1‑64 (MQ=60)
TTCGCGGG‑‑‑TAAACCCGCTCCTACACACATGCCTCAAGATCTGTGCACTGTAGGAGCGGGTT < NB501016:282:H2V7GAFX2:2:21308:10433:1889/61‑1 (MQ=60)
|
GTCGCTACAGCTGATCGCGACAGACGTGTGCTGGTCCGGTGGTCCGGTATATATACCCTAATGATTTATAAAATTTTTATGAACTAACTTTTTGGAATATTTATAGAAGGGGGATTTGTTACAGAGGTGCCGGGCTCTTCGCGGG‑‑‑T‑AACCCGCTCCTACACACATGCCTCAAGATCTGTGCACTGTAGGAGCGGGTTTACCCGCGAAAGGGCCGGAACAGGTTTACTCGGAGGCC > NC_002947_CJ‑RC/278597‑278831
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 0 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
