Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A2 F43 I1 R1
|
60 |
76.0 |
3234326 |
98.3% |
3179342 |
146.8 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| RA |
NC_002947_CJ‑RC |
4,967,019 |
(GC)4→3 |
coding (41‑42/1476 nt) |
fleQ ← |
transcriptional regulator FleQ |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NC_002947_CJ‑RC | 4,967,013 | 0 | G | . | 100.0%
| 357.0
/ NA
| 77 | coding (48/1476 nt) | fleQ | transcriptional regulator FleQ |
| Reads supporting (aligned to +/- strand): ref base G (0/0); new base . (33/44); total (33/44) |
| * | NC_002947_CJ‑RC | 4,967,014 | 0 | C | . | 100.0%
| 357.0
/ NA
| 77 | coding (47/1476 nt) | fleQ | transcriptional regulator FleQ |
| Reads supporting (aligned to +/- strand): ref base C (0/0); new base . (33/44); total (33/44) |
ATTGCCCGGAGCATTCACGGTGCCGATGAGCACGCACAGCACTTCGCGGCTCGAGGACAATGGCTCGACCGCCTGCTGCCAGTCATGGCTGGCACACGCGAGGTTTTCTTCGCCGAGGAAGTTCAGCACCACCGCAAGGTCGCGGCGGC‑GCGCGCTGTCGTCATCGATCAGCAGAATCTTGGTTTCACGCCACATGCAATAGCAACTTCCCTAGTCATATCGGCGCCCTGCAGGGGCGTGCTCGACATCATTCCGACTGAATGGTCAGTGTTCGGACGTCTGAAATTCGA > NC_002947_CJ‑RC/4966866‑4967155
||
aTTGCCCGGAGCATTCACGGTGCCGATGAGCACGCACAGCACTTCGCGGCTCGAGGACAATGGCTCGACCGCCTGCTGCCAGTCATGGCTGGCACACGCGAGGTTTTCTTCGCCGAGGAAGTTCAGCACCACCGCAAGGTCgcggcggc > 6:24106/1‑149 (MQ=255)
cccGGAGCATTCACGGTGCCGATGAGCACGCACAGCACTTCGCGGCTCGAGGACAATGGCTCGACCGCCTGCTGCCAGTCATGGCTGGCACACGCGAGGTTTTCTTCGCCGAGGAAGTTCAGCACCACCGCAAGGTCGCGGCGgc‑gcgc > 7:127773/1‑149 (MQ=255)
cccGGAGCATTCACGGTGCCGATGAGCACGCACAGCACTTCGCGGCTCGAGGACAATGGCTCGACCGCCTGCTGCCAGTCATGGCTGGCACACGCGAGGTTTTCTTCGCCGAGGAAGTTCAGCACCACCGCAAGGTCGCGGCGgc‑gcgc < 7:206762/149‑1 (MQ=255)
gAGCATTCACGGTGCCGATGAGCACGCACAGCACTTCGCGGCTCGAGGACAATGGCTCGACCGCCTGCTGCCAGTCATGGCTGGCACACGCGAGGTTTTCTTCGCCGAGGAAGTTCAGCACCACCGCAAGGTCGCGGCGgc‑gcgctgtc < 1:131473/149‑5 (MQ=255)
gAGCATTCACGGTGCCGATGAGCACGCACAGCACTTCGCGGCTCGAGGACAATGGCTCGACCGCCTGCTGCCAGTCATGGCTGGCACACGCGAGGTTTTCTTCGCCGAGGAAGTTCAGCACCACCGCAAGGTCGCGGCGgc‑gcgctgtc < 7:413368/149‑5 (MQ=255)
ttCACGGTGCCGATGAGCACGCACAGCACTTCGCGGCTCGAGGACAATGGCTCGACCGCCTGCTGCCAGTCATGGCTGGCACACGCGAGGTTTTCTTCGCCGAGGAAGTTCAGCACCACCGCAAGGTCGCGGCG‑‑‑GCGCGCTGTCGTCAt < 4:294455/149‑1 (MQ=255)
ggTGCCGATGAGCACGCACAGCACTTCGCGGCTCGAGGACAATGGCTCGACCGCCTGCTGCCAGTCATGGCTGGCACACGCGAGGTTTTCTTCGCCGAGGAAGTTCAGCACCACCGCAAGGTCGCGGCG‑‑‑GCGCGCTGTCGTCATCGATc < 8:127773/149‑1 (MQ=255)
gTGCCGATGAGCACGCACAGCACTTCGCGGCTCGAGGACAATGGCTCGACCGCCTGCTGCCAGTCATGGCTGGCACACGCGAGGTTTTCTTCGCCGAGGAAGTTCAGCACCACCGCAAGGTCGCGGCG‑‑‑GCGCGCTGTCGTCATCGAt > 3:67475/1‑147 (MQ=255)
ccGATGAGCACGCACAGCACTTCGCGGCTCGAGGACAATGGCTCGACCGCCTGCTGCCAGTCATGGCTGGCACACGCGAGGTTTTCTTCGCCGAGGAAGTTCAGCACCACCGCAAGGTCGCGGCG‑‑‑GCGCGCTGTCGTCATCGATcagc < 7:19157/148‑1 (MQ=255)
ccGATGAGCACGCACAGCACTTCGCGGCTCGAGGACAATGGCTCGACCGCCTGCTGCCAGTCATGGCTGGCACACGCGAGGTTTTCTTCGCCGAGGAAGTTCAGCACCACCGCAAGGTCGCGGCG‑‑‑GCGCGCTGTCGTCATCGATcagc < 7:349323/148‑1 (MQ=255)
ccGATGAGCACGCACAGCACTTCGCGGCTCGAGGACAATGGCTCGACCGCCTGCTGCCAGTCATGGCTGGCACACGCGAGGTTTTCTTCGCCGAGGAAGTTCAGCACCACCGCAAGGTCGCGGCG‑‑‑GCGCGCTGTCGTCATCGATcag > 2:252693/1‑147 (MQ=255)
gcacgcacAGCACTTCGCGGCTCGAGGACAATGGCTCGACCGCCTGCTGCCAGTCATGGCTGGCACACGCGAGGTTTTCTTCGCCGAGGAAGTTCAGCACCACCGCAAGGTCGCGGCG‑‑‑GCGCGCTGTCGTCATCGATCAGCAGAATCtt > 8:218239/1‑149 (MQ=255)
gcacgcacAGCACTTCGCGGCTCGAGGACAATGGCTAGACCGCCTGCTGCCAGTCATGGCTGGCACACGCGAGGTTTTCTTCGCCGAGGAAGTTCAGCACCACCGCAAGGTCGCGGCG‑‑‑GCGCGCTGTCGTCATCGATCAGCAGAATCtt < 6:16821/149‑1 (MQ=255)
cacgcacAGCACTTCGCGGCTCGAGGACAGTGGCTCGACCGCCTGCTGCCAGTCATGGCTGGCACACGCGAGGTTTTCTTCGCCGAGGAAGTTCAGCACCACCGCAAGGTCGCGGCG‑‑‑GCGCGCTGTCGTCATCGATCAGCAGAATCTTg > 1:68739/1‑149 (MQ=255)
cacgcacAGCACTTCGCGGCTCGAGGACAATGGCTCGACCGCCTGCTGCCAGTCATGGCTGGCACACGCGAGGTTTTCTTCGCCGAGGAAGTTCAGCACCACCGCAAGGTCGCGGCG‑‑‑GCGCGCTGTCGTCATCGATCAGCAGAATCTTg < 5:326881/149‑1 (MQ=255)
acgcacAGCACTTCGCGGCTCGAGGACAATGGCTCGACCGCCTGCTGCCAGTCATGGCTGGCACACGCGAGGTTTTCTTCGCCGAGGAAGTTCAGCACCACCGCAAGGTCGCGGCG‑‑‑GCGCGCTGTCGTCATCGATCAGCAGAATCTTgg < 6:388265/149‑1 (MQ=255)
gcacAGCACTTCGCGGCTCGAGGACAATGGCTCGACCGCCTGCTGCCAGTCATGGCTGGCACACGCGAGGTTTTCTTCGCCGAGGAAGTTCAGCACCACCGCAAGGTCGCGGCG‑‑‑GCGCGCTGTCGTCATCGATCAGCAGAATCTTGGtt < 8:322706/149‑1 (MQ=255)
acaGCACTTCGCGGCTCGAGGACAATGGCTCGACCGCCTGCTGCCAGTCATGGCTGGCACACGCGAGGTTTTCTTCGCCGAGGAAGTTCAGCACCACCGCAAGGTCGCGGCG‑‑‑GCGCGCTGTCGTCATCGATCAGCAGAATCTTGGttt > 5:360633/1‑148 (MQ=255)
cTTCGCGGCTCGAGGACAATGGCTCGACCGCCTGCTGCCAGTCATGGCTGGCACACGCGAGGTTTTCTTCGCCGAGGAAGTTCAGCACCACCGCAAGGTCGCGGCG‑‑‑GCGCACTGTCGTCATCGATCAGCAGAATCTTGGTTTCACGCca < 2:254818/149‑1 (MQ=255)
ttCGCGGCTCGAGGACAATGGCTCGACCGCCTGCTGCCAGTCATGGCTGGCACACGCGAGGTTTTCTTCGCCGAGGAAGTTCAGCACCACCGCAAGGTCGCGGCG‑‑‑GCGCGCTGTCGTCATCGATCAGCAGAATCTTGGTTTCACGCca > 2:124976/1‑148 (MQ=255)
cTCGAGGACAATGGCTCGACCGCCTGCTGCCAGTCATGGCTGGCACACGCGAGGTTTTCTTCGCCGAGGAAGTTCAGCACCACCGCAAGGTCGCGGCG‑‑‑GCGCGCTGTCGTCATCGATCAGCAGAATCTTGGTTTCACGCCACATGCAAt < 7:128766/149‑1 (MQ=255)
tCGAGGACAATGGCTCGACCGCCTGCTGCCAGTCATGGCTGGCACACGCGAGGTTTTCTTCGCCGAGGAAGTTCAGCACCACCGCAAGGTCGCGGCG‑‑‑GCGCGCTGTCGTCATCGATcag < 6:162459/119‑1 (MQ=255)
tCGAGGACAATGGCTCGACCGCCTGCTGCCAGTCATGGCTGGCACACGCGAGGTTTTCTTCGCCGAGGAAGTTCAGCACCACCGCAAGGTCGCGGCG‑‑‑GCGCGCTGTCGTCATCGATcag > 5:162459/1‑119 (MQ=255)
tCGAGGACAATGGCTCGACCGCCTGCTGCCAGTCATGGCTGGCACACGCGAGGTTTTCTTCGCCGAGGAAGTTCAGCACCACCGCAAGGTCGCGGCG‑‑‑GCGCGCTGTCGTCATCGATCAGCAGAATCTTGGTTTCACGCCACAt > 4:366239/1‑143 (MQ=255)
tCGAGGACAATGGCTCGACCGCCTGCTGCCAGTCATGGCTGGCACACGCGAGGTTTTCTTCGCCGAGGAAGTTCAGCACCACCGCAAGGTCGCGGCG‑‑‑GCGCGCTGTCGTCATCGATCAGCAGAATCTTGGTTTCACGCCACAt < 3:366239/143‑1 (MQ=255)
tCGAGGACAATGGCTCGACCGCCTGCTGCCAGTCATGGCTGGCACACGCGAGGTTTTCTTCGCCGAGGAAGTTCAGCACCACCGCAAGGTCGCGGCG‑‑‑GCGCGCTGTCGTCATCGATCAGCAGAATCTTGGTTTCACGCCACATGCaa > 4:45620/1‑147 (MQ=255)
tCGAGGACAATGGCTCGACCGCCTGCTGCCAGTCATGGCTGGCACACGCGAGGTTTTCTTCGCCGAGGAAGTTCAGCACCACCGCAAGGTCGCGGCG‑‑‑GCGCGCTGTCGTCATCGATCAGCAGAATCTTGGTTTCACGCCACATGCAATa < 7:218239/149‑1 (MQ=255)
gAGGACAATGGCTCGACCGCCTGCTGCCAGTCATGGCTGGCACACGCGAGGTTTTCTTCGCCGAGGAAGTTCAGCACCACCGCAAGGTCGCGGCG‑‑‑GCGCGCTGTCGTCATCGATCAGCAGAATCTTGGTTTCACGCCACATGCAATa < 2:340739/147‑1 (MQ=255)
gAGGACAATGGCTCGACCGCCTGCTGCCAGTCATGGCTGGCACACGCGAGGTTTTCTTCGCCGAGGAAGTTCAGCACCACCGCAAGGTCGCGGCG‑‑‑GCGCGCTGTCATCATCGATCAGCAGAATCTTGGTTTCACGCCACATGCAATa < 1:68160/147‑1 (MQ=255)
aGGACAATGGCTCGACCGCCTGCTGCCAGTCATGGCTGGCACACGCGAGGTTTTCTTCGCCGAGGAAGTTCAGCACCACCGCAAGGTCGCGGCG‑‑‑GCGCGCTGTCGTCATCGATCAGCAGAATCTTGGTTTCACGCCACATGCAATAGc > 2:207874/1‑148 (MQ=255)
ggACAATGGCTCGACCGCCTGCTGCCAGTCATGGCTGGCACACGCGAGGTTTTCTTCGCCGAGGAAGTTCAGCACCACCGCAAGGTCGCGGCG‑‑‑GCGCGCTGTCGTCATCGATCAGCAGAATCTTGGTTTCACGCCACATGCAATAGCaa < 6:362190/149‑1 (MQ=255)
cAATGGCTCGACCGCCTGCTGCCAGTCATGGCTGGCACACGCGAGGTTTTCTTCGCCGAGGAAGTTCAGCACCACCGCAAGGTCGCGGCG‑‑‑GCGCGCTGTCGTCATCGATCAGCAGAATCTTGGTTTCACGCCACATGCAATAGCAACtt > 6:2132/1‑149 (MQ=255)
aaTGGCTCGACCGCCTGCTGCCAGTCATGGCTGGCACACGCGAGGTTTTCTTCGCCGAGGAAGTTCAGCACCACCGCAAGGTCGCGGCG‑‑‑GCGCGCTGTCGTCATCGATCAGCAGAATCTTGGTTTCACGCCTCATGCAATAGCAACTTc > 8:33350/1‑149 (MQ=255)
aaTGGCTCGACCGCCTGCTGCCAGTCATGGCTGGCACACGCGAGGTTTTCTTCGCCGAGGAAGTTCAGCACCACCGCAAGGTCGCGGCG‑‑‑GCGCGCTGTCGTCATCGATCAGCAGAATCTTGGTTTCACGCCACATGCAATAGCAACTTc > 2:135969/1‑149 (MQ=255)
tGGCTCGACCGCCTGCTGCCAGTCATGGCTGGCACACGCGAGGTTTTCTTCGCCGAGGAAGTTCAGCACCACCGCAAGGTCGCGGCG‑‑‑GCGCGCTGTCGTCATCGATCAGCAGAATCTTGGTTTCACGCCACATGCAATAGCAACTTccc < 7:363115/149‑1 (MQ=255)
gCTCGACCGCCTGCTGCCAGTCATGGCTGGCACACGCGAGGTTTTCTTCGCCGAGGAAGTTCAGCACCACCGCAAGGTCGCGGCG‑‑‑GCGCGCTGTCGTCATCGATCAGCAGAATCTTGGTTTCACGCCACATGCAATAGCAACTTCCCt < 1:138941/148‑1 (MQ=255)
tCGACCGCCTGCTGCCAGTCATGGCTGGCACACGCGAGGTTTTCTTCGCCGAGGAAGTTCAGCACCACCGCAAGGTCGCGGCG‑‑‑GCGCGCTGTCGTCATCGATCAGCAGAATCTTGGTTTCCCGCCACATGCAATAGCAACTTCCCTAGt > 3:255503/1‑149 (MQ=255)
aCCGCCTGCTGCCAGTCATGGCTGGCACACGCGAGGTTTTCTTCGCCGAGGAAGTTCAGCACCACCGCAAGGTCGCGGCG‑‑‑GCGCGCTGTCGTCATCGATCAGCAGAATCTTGGTTTCACGCCACATGCAATAGCAACTTCCCTAGTCat < 2:68739/149‑1 (MQ=255)
ccGCCTGCTGCCAGTCATGGCTGGCACACGCGAGGTTTTCTTCGCCGAGGAAGTTCAGCACCACCGCAAGGTCGCGGCG‑‑‑GCGCGCTGTCGTCATCGATCAGCAGAATCTTGGTTTCACGCCACATGCAATAGCAACTTCCCTAGTCata > 5:9701/1‑149 (MQ=255)
ccGCCTGCTGCCAGTCATGGCTGGCACACGCGAGGTTTTCTTCGCCGAGGAAGTTCAGCACCACCGCAAGGTCGCGGCG‑‑‑GCGCGCTGTCGTCATCGATCAGCAGAATCTTGGTTTCACGCCACATGCAATAGCAACTTCCCTAGTCata > 3:260259/1‑149 (MQ=255)
ccGCCTGCTGCCAGTCATGGCTGGCACACGCGAGGTTTTCTTCGCCGAGGAAGTTCAGCACCACCGCAAGGTCGCGGCG‑‑‑GCGCGCTGTCGTCATCGATCAGCAGAATCTTGGTTTCACGCCACATGCAATAGCAACTTCCCTAGTCata > 1:290935/1‑149 (MQ=255)
cgtgtgcCAGCCATGACTGGCACACGCGAGGTTTTCTTCGCCGAGGAAGTTCAGCACCACCGCAAGGTCGCGGCG‑‑‑GCGCGCTGTCGTCATCGATCAGCAGAATCTTGGTTTCACGCCACATGCAATAGCAACTTCCCTAGTCATATCgg > 4:240865/5‑149 (MQ=255)
ctgcCAGTCATGGCTGGCACACGCGAGGTTTTCTTCGCCGAGGAAGTTCAGCACCACCGCAAGGTCGCGGCG‑‑‑GCGCGCTGTCGTCATCGATCAGCAGAATCTTGGTTTCACGCCACATGCAATAGCAACTTCCCTAGTCATATCGgcgc < 6:400743/149‑1 (MQ=255)
ctgcCAGTCATGGCTGGCACACGCGAGGTTTTCTTCGCCGAGGAAGTTCAGCACCACCGCAAGGTCGCGGCG‑‑‑GCGCGCTGTCGTCATCGATCAGCAGAATCTTGGTTTCACGCCACATGCAATAGCAACTTCCCTAGTCATATCGgc < 6:183345/147‑1 (MQ=255)
tgcCAGTCATGGCTGGCACACGCGAGGTTTTCTTCGCCGAGGAAGTTCAGCACCACCGCAAGGTCGCGGCG‑‑‑GCGCGCTGTCGTCATCGATCAGCAGAATCTTGGTTTCACGCCACATGCAATAGCAACTTCCCTAGTCATATCGGCGcc > 3:349175/1‑149 (MQ=255)
gcCAGTCATGGCTGGCACACGCGAGGTTTTCTTCGCCGAGGAAGTTCAGCACCACCGCAAGGTCGCGGCG‑‑‑GCGCGCTGTCGTCATCGATCAGCAGAATCTTGGTTTCACGCCACATGCAATAGCAACTTCCCTAGTCATATCGGCGccc > 8:151956/1‑149 (MQ=255)
gcCAGTCATGGCTGGCACACGCGAGGTTTTCTTCGCCGAGGAAGTTCAGCACCACCGCAAGGTCGCGGCG‑‑‑GCGCGCTGTCGTCATCGATCAGCAGAATCTTGGTTTCACGCCACATGCAATAGCAACTTCCCTAGTCATATCGGCGccc > 8:44857/1‑149 (MQ=255)
ccAGTCATGGCTGGCACACGCGAGGTTTTCTTCGCCGAGGAAGTTCAGCACCACCGCAAGGTCGCGGCG‑‑‑GCGCGCTGTCGTCATCGATCAGCAGAATCTTGGTTTCACGCCACATGCAATAGCAACTTCCCTAGTCATATCGGCGCCCt < 7:167555/149‑1 (MQ=255)
ccAGTCATGGCTGGCACACGCGAGGTTTTCTTCGCCGAGGAAGTTCAGCACCACCGCAAGGTCGCGGCG‑‑‑GCGCGCTGTCGTCATCGATCAGCAGAATCTTGGTTTCACGCCACATGCAATAGCAACTTCCCTAGTCATATCGGCGCCCt < 6:324672/149‑1 (MQ=255)
aGTCATGGCTGGCACACGCGAGGTTTTCTTCGCCGAGGAAGTTCAGCACCACCGCAAGGTCGCGGCG‑‑‑GCGCGCTGTCGTCATCGATCAGCAGAATCTTGGTTTCACGCCACATGCAATAGCAACTTCCCTAGTCATATCGGCGCCCTg > 2:196583/1‑148 (MQ=255)
aTGGCTGGCACACGCGAGGTTTTCTTCGCCGAGGAAGTTCAGCACCACCGCAAGGTCGCGGCG‑‑‑GCGCGCTGTCGTCATCGATCAGCAGAATCTTGGTTTCACGCCACATGCAATAGCAACTTCCCTAGTCATATCGGCGCCCTGCAggg < 4:85955/149‑1 (MQ=255)
aTGGCTGGCACACGCGAGGTTTTCTTCGCCGAGGAAGTTCAGCACCACCGCAAGGTCGCGGCG‑‑‑GCGCGCTGTCGTCATCGATCAGCAGAATCTTGGTTTCACGCCACATGCAATAGCAACTTCCCTAGTCATATCGGCGCCCTGCAgg < 6:37612/148‑1 (MQ=255)
gctggcACACGCGAGGTTTTCTTCGCCGAGGAAGTTCAGCACCACCGCAAGGTCGCGGCG‑‑‑GCGCGCTGTCGTCATCGATCAGCAGAATCTTGGTTTCACGCCACATGCAATAGCAACTTCCCTAGTCATATCGGCGCCCTGCAGGGGc < 2:253222/148‑1 (MQ=255)
gctggcACACGCGAGGTTTTCTTCGCCGAGGAAGTTCAGCACCACCGCAAGGTCGCGGCG‑‑‑GCGCGCTGTCGTCATCGATCAGCAGAATCTTGGTTTCACGCCACATGCAATAGCAACTTCCCTAGTCATATCGGCGCCCTGCAGGGGCg > 5:202512/1‑149 (MQ=255)
cacaCGCGAGGTTTTCTTCGCCGAGGAAGTTCAGCACCACCGCAAGGTCGCGGCG‑‑‑GCGCGCTGTCGTCATCGATCAGCAGAATCTTGGTTTCACGCCACATGCAATAGCAACTTCCCTAGTCATATCGGCGCCCTGCAGGGGCGTGCTc < 3:244983/149‑1 (MQ=255)
acacGCGAGGTTTTCTTCGCCGAGGAAGTTCAGCACCACCGCAAGGTCGCGGCG‑‑‑GCGCGCTGTCGTCATCGATCAGCAGAATCTTGGTTTCACGCCACATGCAATAGCAACTTCCCTAGTCATATCGGCGCCCTGCAGGGGCGTGCTc > 3:36146/1‑148 (MQ=255)
gcgAGGTTTTCTTCGCCGAGGAAGTTCAGCACCACCGCAAGGTCGCGGCG‑‑‑GCGCGCTGTCGTCATCGATCAGCAGAATCTTGGTTTCACGCCACATGCAATAGCAACTTCCCTAGTCATATCGGCGCCCTGCAGGGGCGTGCTCGAcat < 1:207874/149‑1 (MQ=255)
cgAGGTTTTCTTCGCCGAGGAAGTTCAGCACCACCGCAAGGTCGCGGCG‑‑‑GCGCGCTGTCGTCATCGATCAGCAGAATCTTGGTTTCACGCCACATGCAATAGCAACTTCCCTAGTCATATCGGCGCCCTGCAGGGGCGTGCTCGAcatc < 5:132295/149‑1 (MQ=255)
gAGGTTTTCTTCGCCGAGGAAGTTCAGCACCACCGCAAGGTCGCGGCG‑‑‑GCGCGCTGTCGTCATCGATCAGCAGAATCTTGGTTTCACGCCACATGCAATAGCAACTTCCCTAGTCATATCGGCGCCCTGCAGGGGCGTGCTCGAcatca < 4:121493/149‑1 (MQ=255)
cGCCGAGGAAGTTCAGCACCACCGCAAGGTCGCGGCG‑‑‑GCGCGCTGTCGTCATCGATCAGCAGAATCTTGGTTTCACGCCACATGCAATAGCAACTTCCCTAGTCATATCGGCGCCCTGCAGGGGCGTGCTCGACATCATTCCGACt < 7:44857/146‑1 (MQ=255)
cGCCGAGGAAGTTCAGCACCACCGCAAGGTCGCGGCG‑‑‑GCGCGCTGTCGGCATCGATCAGCAGAATCTTGGTTTCACGCCACATGCAATAGCAACTTCCCTAGTCATATCGGCGCCCTGCAGGGGCGTGCTCGACATCATTCCGACTGa < 2:231524/148‑1 (MQ=255)
ccGAGGAAGTTCAGCACCACCGCAAGGTCGCGGCG‑‑‑GCGCGCTGTCGTCATCGATCAGCAGAATCTTGGTTTCACGCCACATGCAATAGCAACTTCCCTAGTCATATCGGCGCCCTGCAGGGGCGTGCTCGACATCATTCCGACTGAATg > 8:218133/1‑149 (MQ=255)
gAGGAAGTTCAGCACCACCGCAAGGTCGCGGCG‑‑‑GCGCGCTGTCGTCATCGATCAGCAGAATCTTGGTTTCACGCCACATGCAATAGCAACTTCCCTAGTCATATCGGCGCCCTGCAGGGGCGTGCTCGACATCATTCCGACTGAATGGt < 5:24106/149‑1 (MQ=255)
gAGGAAGTTCAGCACCACCGCAAGGTCGCGGCG‑‑‑GCGCGCTGTCGTCATCGATCAGCAGAATCTTGGTTTCACGCCACATGCAATAGCAACTTCCCTAGTCATATCGGCGCCCTGCAGGGGCGTGCTCGACATCATTCCGACTGAATGGt > 6:145849/1‑149 (MQ=255)
aGGAAGTTCAGCACCACCGCAAGGTCGCGGCG‑‑‑GCGCGCTGTCGTCATCGATCAGCAGAATCTTGGTTTCACGCCACATGCAATAGCAACTTCCCTAGTCATATCGGCGCCCTGCAGGGGCGTGCTCGACATCATTc > 6:337227/1‑136 (MQ=255)
aGGAAGTTCAGCACCACCGCAAGGTCGCGGCG‑‑‑GCGCGCTGTCGTCATCGATCAGCAGAATCTTGGTTTCACGCCACATGCAATAGCAACTTCCCTAGTCATATCGGCGCCCTGCAGGGGCGTGCTCGACATCATTc < 5:337227/136‑1 (MQ=255)
aGGAAGTTCAGCACCACCGCAAGGTCGCGGCG‑‑‑GCGCGCTGTCGTCATCGATCAGCAGAATCTTGGTTTCACGCCACATGCAATAGCAACTTCCCTAGTCATATCGGCGCCCTGCAGGGGCGTGCTCGACATCATTCCGACTGAATGGt > 3:347614/1‑148 (MQ=255)
ggAAGTTCAGCACCACCGCAAGGTCGCGGCG‑‑‑GCGCGCTGTCGTCATCGATCAGCAGAATCTTGGTTTCACGCCACATGCAATAGCAACTTCCCTAGTCATATCGGCGCCCTGCAGGGGCGTGCTCGACATCATTCCGACTGAATGGTCa < 6:9701/149‑1 (MQ=255)
ttCAGCACCACCGCAAGGTCGCGGCG‑‑‑GCGCGCTGTCGTCATCGATCAGCAGAATCTTGGTTTCACGCCACATGCAATAGCAACTTCCCTAGTCATATCGGCGCCCTGCAGGGGCGTGCTCGACATCATTCCGACTGAATGGTCAGTGtt < 1:60541/149‑1 (MQ=255)
tCAGCACCACCGCAAGGTCGCGGCG‑‑‑GCGCGCTGTCGTCATCGATCAGCAGAATCTTGGTTTCACGCCACATGCAATAGCAACTTCCCTAGTCATATCGGCGCCCTGCAGGGGCGTGCTCGACATCATTCCGACTGAATGGTCAGTGTTc > 5:9706/1‑149 (MQ=255)
caccacCGCAAGGTCGCGGCG‑‑‑GCGCGCTGTCGTCATCGATCAGCAGAATCTTGGTTTCACGCCACATGCAATAGCAACTTCCCTAGTCATATCGGCGCCCTGCAGGGGCGTGCTCGACATCATTCCGACTGAATGGTCAGTGTTCGGAc < 4:374594/149‑1 (MQ=255)
accaccGCAAGGTCGCGGCG‑‑‑GCGCGCTGTCGTCATCGATCAGCAGAATCTTGGTTTCACGCCACATGCAATAGCAACTTCCCTAGTCATATCGGCGCCCTGCAGGGGCGTGCTCGACATCATTCCGACTGAATGGTCAGTGTTCGGACg > 8:212232/1‑149 (MQ=255)
ccaccGCAAGGTCGCGGCG‑‑‑GCGCGCTGTCGTCATCGATCAGCAGAATCTTGGTTTCACGCCACATGCAATAGCAACTTCCCTAGTCATATCGGCGCCCTGCAGGGGCGTGCTCGACATCATTCCGACTGAATGGTCAGTGTTCGGACGt < 1:116743/149‑1 (MQ=255)
caccGCAAGGTCGCGGCG‑‑‑GCGCGCTGTCGTCATCGATCAGCAGAATCTTGGTTTCACGCCACATGCAATAGCAACTTCCCTAGTCATATCGGCGCCCTGCAGGGGCGTGCTCGACATCATTCCGACTGAATGGTCAGTGTTCGGACGTc > 8:1307/1‑149 (MQ=255)
ccGCAAGGTCGCGGCG‑‑‑GCGCGCTGTCGTCATCGATCAGCAGAATCTTGGTTTAACGCCACATGCAATAGCAACTTCCCTAGTCATATCGGCGCCCTGCAGGGGCGTGCTCGACATCATTCCGACTGAATGGTCAGTGTTCGGACGTCt > 1:227558/1‑148 (MQ=255)
cGCAAGGTCACGGCG‑‑‑GCGCGCTGTCGTCATCGATCAGCAGAATCTTGGTTTCACGCCACATGCAATAGCAACTTCCCTAGTCATATCGGCGCCCTGCAGGGGCGTGCTCGACATCATTCCGACTGAATGGTCAGTGTTCGGACGTCTGa < 3:324746/149‑1 (MQ=255)
gCAAGGTCGCGGCG‑‑‑GCGCGCTGTCGTCATCGATCAGCAGAATCTTGGTTTCACGCCACATGCAATAGCAACTTCCCTAGTCATATCGGCGCCCTGCAGGGGCGTGCTCGACATCATTCCGACTGAATGGTCAGTGTTCGGACGTCTGaa < 2:360611/149‑1 (MQ=255)
gCAAGGTCGCGGCG‑‑‑GCGCGCTGTCGTCATCGATCAGCAGAATCTTGGTTTCACGCCACATGCAATAGCAACTTCCCTAGTCATATCGGCGCCCTGCAGGGGCGTGCTCGACATCATTCCGACTGAATGGTCAGTGTTCGGACGTCTGa > 7:254875/1‑148 (MQ=255)
ggTCGCGGCG‑‑‑GCGCGCTGTCGTCATCGATCAGCAGAATCTTGGTTTCACGCCACATGCAATAGCAACTTCCCTAGTCATATCGGCGCCCTGCAGGGGCGTGCTCGACATCATTCCGACTGAATGGTCAGTGTTCGGACGTCTGATATTc < 7:145771/149‑1 (MQ=255)
ggTCGCGGCG‑‑‑GCGCGCTGTCGTCATCGATCAGCAGAATCTTGGTTTCACGCCACATGCAATAGCAACTTCCCTAGTCATATCGGCGCCCTGCAGGGGCGTGCTCGACATCATTCCGACTGAATGGTCAGTGTTCGGACGTCTGAAATTc < 8:122998/149‑1 (MQ=255)
ggTCGCGGCG‑‑‑GCGCGCTGTCGTCATCGATCAGCAGAATCTTGGTTTCACGCCACATGCAATAGCAACTTCCCTAGTCATATCGGCGCCCTGCAGGGGCGTGCTCGACATCATTCCGACTGAATGGTCAGTGTTCGGACGTCTGAAATTc < 4:36146/149‑1 (MQ=255)
gTCGCGGCG‑‑‑GCGCGCTGTCGTCATCGATCAGCAGAATCTTGGTTTCACGCCACATGCAATAGCAACTTCCCTAGTCATATCGGCGCCCTGCAGGGGCGTGCTCGACATCATTCCGACTGAATGGTCAGTGTTCGGACGTCTGAAATTCg < 5:145849/149‑1 (MQ=255)
gcggcggcgCGCTGTCGTCATCGATCAGCAGAATCTTGGTTTCACGCCACATGCTATAGCAACTTCCCTAGTCATATCGGCGCCCTGCAGGGGCGTGCTCGACATCATTCCGACTGAATGGTCAGTGTTCGGACGTCTGAAATTCGa > 2:257923/1‑147 (MQ=255)
||
ATTGCCCGGAGCATTCACGGTGCCGATGAGCACGCACAGCACTTCGCGGCTCGAGGACAATGGCTCGACCGCCTGCTGCCAGTCATGGCTGGCACACGCGAGGTTTTCTTCGCCGAGGAAGTTCAGCACCACCGCAAGGTCGCGGCGGC‑GCGCGCTGTCGTCATCGATCAGCAGAATCTTGGTTTCACGCCACATGCAATAGCAACTTCCCTAGTCATATCGGCGCCCTGCAGGGGCGTGCTCGACATCATTCCGACTGAATGGTCAGTGTTCGGACGTCTGAAATTCGA > NC_002947_CJ‑RC/4966866‑4967155
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
BRESEQ :: bam2aln output
GCCCGGAGCATTCACGGTGCCGATGAGCACGCACAGCACTTCGCGGCTCGAGGACAATGGCTCGACCGCCTGCTGCCAGTCATGGCTGGCACACGCGAGGTTTTCTTCGCCGAGGAAGTTCAGCACCACCGCAAGGTCGCGGCGGCGCGCGCTGTCGTCATCGATCAGCAGAATCTTGGTTTCACGCCACATGCAATAGCAACTTCCCTAGTCATATCGGCGCCCTGCAGGGGCGTGCTCGACATCATTCCGACTGAATGGTCAGTGTTCGGACGTCTGAAATTCGAAAACAGCCACTAGT > NC_002947_CJ‑RC/4966869‑4967169
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GCCCGGAGCATTCACGGTGCCGATGAGCACGCACAGCACTTCGCGGCTCGAGGACAATGGCTCGACCGCCTGCTGCCAGTCATGGCTGGCACACGCGAGGTTTTCTTCGCCGAGGAAGTTCAGCACCACCGCAAGGTCGCGGCGGCGCGCT < NB501016:282:H2V7GAFX2:4:11612:2830:8779/151‑1 (MQ=60)
GCCCGGAGCATTCACGGTGCCGATGAGCACGCACAGCACTTCGCGGCTCGAGGACAATGGCTCGACCGCCTGCTGCCAGTCATGGCTGGCACACGCGAGGTTTTCTTCGCCGAGGAAGTTCAGCACCACCGCAAGGTCGCGGCGGCGCGCT > NB501016:282:H2V7GAFX2:4:11510:12980:11067/1‑151 (MQ=60)
GGTGCCGATGAGCACGCACAGCACTTCGCGGCTCGAGGACAATGGCTCGACCGCCTGCTGCCAGTCATGGCTGGCACACGCGAGGTTTTCTTCGCCGAGGAAGTTCAGCACCACCGCAAGGTCGCGGCG‑‑GCGCGCTGTCGTCATCGATC > NB501016:282:H2V7GAFX2:2:11201:25019:2844/1‑149 (MQ=60)
GCCGATGAGCACGCACAGCACTTCGCGGCTCGAGGACAATGGCTCGACCGCCTGCTGCCAGTCATGGCTGGCACACGCGAGGTTTTCTTCGCCGAGGAAGTTCAGCACCACCGCAAGGTCGCGGCG‑‑GCGCGCTGTCGTCATCGATCAGCA < NB501016:282:H2V7GAFX2:4:21512:12908:14911/150‑1 (MQ=60)
GCCGATGAGCACGCACAGCACTTCGCGGCTCGAGGACAATGGCTCGACCGCCTGCTGCCAGTCATGGCTGGCACACGCGAGGTTTTCTTCGCCGAGGAAGTTCAGCACCACCGCAAGGTCGCGGCG‑‑GCGCGCTGTCGTCATCGATCAGCA < NB501016:282:H2V7GAFX2:4:11404:5994:6653/150‑1 (MQ=60)
GCACGCACAGCACTTCGCGGCTCGAGGACAGTGGCTCGACCGCCTGCTGCCAGTCATGGCTGGCACACGCGAGGTTTTCTTCGCCGAGGAAGTTCAGCACCACCGCAAGGTCGCGGCG‑‑GCGCGCTGTCGTCATCGATCAGCAGAATCTTGG > NB501016:282:H2V7GAFX2:1:11112:14407:5810/1‑151 (MQ=60)
GCACGCACAGCACTTCGCGGCTCGAGGACAATGGCTCGACCGCCTGCTGCCAGTCATGGCTGGCACACGCGAGGTTTTCTTCGCCGAGGAAGTTCAGCACCACCGCAAGGTCGCGGCG‑‑GCGCGCTGTCGTCATCGATCAGCAGAATCTTGG < NB501016:282:H2V7GAFX2:3:21511:5502:15977/151‑1 (MQ=60)
CACAGCACTTCGCGGCTCGAGGACAATGGCTCGACCGCCTGCTGCCAGTCATGGCTGGCACACGCGAGGTTTTCTTCGCCGAGGAAGTTCAGCACCACCGCAAGGTCGCGGCG‑‑GCGCGCTGTCGTCATCGATCAGCAGAATCTTGGTTTC > NB501016:282:H2V7GAFX2:3:21605:14088:10313/1‑150 (MQ=60)
GCTCGAGGACAATGGCTCGACCGCCTGCTGCCAGTCATGGCTGGCACACGCGAGGTTTTCTTCGCCGAGGAAGTTCAGCACCACCGCAAGGTCGCGGCG‑‑GCGCGCTGTCGTCATCGATCAGCAGAATCTTGGTTTCACGCCACATGCAATA < NB501016:282:H2V7GAFX2:4:11510:22464:14226/151‑1 (MQ=60)
GTCGAGGACAATGGCTCGACCGCCTGCTGCCAGTCATGGCTGGCACACGCGAGGTTTTCTTCGCCGAGGAAGTTCAGCACCACCGCAAGGTCGCGGCG‑‑GCGCGCTGTCGTCATCGATCAGCAGAATCTTGGTTTCACGCCACATGCAATAG < NB501016:282:H2V7GAFX2:4:21402:16787:8194/151‑1 (MQ=60)
CTCGAGGACAATGGCTCGACCGCCTGCTGCCAGTCATGGCTGGCACACGCGAGGTTTTCTTCGCCGAGGAAGTTCAGCACCACCGCAAGGTCGCGGCG‑‑GCGCGCTGTCGTCATCGATCAGCAGAATCTTGGTTTCACGCCACATG < NB501016:282:H2V7GAFX2:2:21308:11354:2937/145‑1 (MQ=60)
CTCGAGGACAATGGCTCGACCGCCTGCTGCCAGTCATGGCTGGCACACGCGAGGTTTTCTTCGCCGAGGAAGTTCAGCACCACCGCAAGGTCGCGGCG‑‑GCGCGCTGTCGTCATCGATCAGC > NB501016:282:H2V7GAFX2:3:11605:4692:13855/1‑121 (MQ=60)
CGAGGACAATGGCTCGACCGCCTGCTGCCAGTCATGGCTGGCACACGCGAGGTTTTCTTCGCCGAGGAAGTTCAGCACCACCGCAAGGTCGCGGCG‑‑GCGCGCTGTCATCATCGATCAGCAGAATCTTGGTTTCACGCCACATGCAATAG < NB501016:282:H2V7GAFX2:1:11112:3545:3940/149‑1 (MQ=60)
ATGGCTCGACCGCCTGCTGCCAGTCATGGCTGGCACACGCGAGGTTTTCTTCGCCGAGGAAGTTCAGCACCACCGCAAGGTCGCGGCG‑‑GCGCGCTGTCGTCATCGATCAGCAGAATCTTGGTTTCACGCCACATGCAATAGCAACTTCCCT < NB501016:282:H2V7GAFX2:4:21603:14096:4182/151‑1 (MQ=60)
GGCTCGACCGCCTGCTGCCAGTCATGGCTGGCACACGCGAGGTTTTCTTCGCCGAGGAAGTTCAGCACCACCGCAAGGTCGCGGCG‑‑GCGCGCTGTCGTCATCGATCAGCAGAATCTTGGTTTCACGCCACATGCAATAGCAACTTCCCTA < NB501016:282:H2V7GAFX2:1:11212:20183:8280/150‑1 (MQ=60)
CTCGACCGCCTGCTGCCAGTCATGGCTGGCACACGCGAGGTTTTCTTCGCCGAGGAAGTTCAGCACCACCGCAAGGTCGCGGCG‑‑GCGCGCTGTCGTCATCGATCAGCAGAATCTTGGTTTCCCGCCACATGCAATAGCAACTTCCCTAGTC > NB501016:282:H2V7GAFX2:2:21109:12036:19231/1‑151 (MQ=60)
ACCGCCTGCTGCCAGTCATGGCTGGCACACGCGAGGTTTTCTTCGCCGAGGAAGTTCAGCACCACCGCAAGGTCGCGGCG‑‑GCGCGCTGTCGTCATCGATCAGCAGAATCTTGGTTTCACGCCACATGCAATAGCAACTTCCCTAGTCCTAT > NB501016:282:H2V7GAFX2:3:11402:15632:15570/1‑151 (MQ=60)
ACCGCCTGCTGCCAGTCATGGCTGGCACACGCGAGGTTTTCTTCGCCGAGGAAGTTCAGCACCACCGCAAGGTCGCGGCG‑‑GCGCGCTGTCGTCATCGATCAGCAGAATCTTGGTTTCACGCCACATGCAATAGCAACTTCCCTAGTCATAT > NB501016:282:H2V7GAFX2:2:21110:17166:17132/1‑151 (MQ=60)
ACCGCCTGCTGCCAGTCATGGCTGGCACACGCGAGGTTTTCTTCGCCGAGGAAGTTCAGCACCACCGCAAGGTCGCGGCG‑‑GCGCGCTGTCGTCATCGATCAGCAGAATCTTGGTTTCACGCCACATGCAATAGCAACTTCCCTAGTCATAT > NB501016:282:H2V7GAFX2:1:21203:8512:16554/1‑151 (MQ=60)
CTGCCAGTCATGGCTGGCACACGCGAGGTTTTCTTCGCCGAGGAAGTTCAGCACCACCGCAAGGTCGCGGCG‑‑GCGCGCTGTCGTCATCGATCAGCAGAATCTTGGTTTCACGCCACATGCAATAGCAACTTCCCTAGTCATATCGGCGCCC > NB501016:282:H2V7GAFX2:2:21305:11585:3364/1‑151 (MQ=60)
GCCAGTCATGGCTGGCACACGCGAGGTTTTCTTCGCCGAGGAAGTTCAGCACCACCGCAAGGTCGCGGCG‑‑GCGCGCTGTCGTCATCGATCAGCAGAATCTTGGTTTCACGCCACATGCAATAGCAACTTCCCTAGTCATATCGGCGCCCTG < NB501016:282:H2V7GAFX2:4:11605:4115:10680/151‑1 (MQ=60)
GGCTGGCACACGCGAGGTTTTCTTCGCCGAGGAAGTTCAGCACCACCGCAAGGTCGCGGCG‑‑GCGCGCTGTCGTCATCGATCAGCAGAATCTTGGTTTCACGCCACATGCAATAGCAACTTCCCTAGTCATATCGGCGCCCTGCAGGGGCGT > NB501016:282:H2V7GAFX2:3:11612:7585:7652/1‑151 (MQ=60)
GCACACGCGAGGTTTTCTTCGCCGAGGAAGTTCAGCACCACCGCAAGGTCGCGGCG‑‑GCGCGCTGTCGTCATCGATCAGCAGAATCTTGGTTTCACGCCACATGCAATAGCAACTTCCCTAGTCATATCGGCGCCCTGCAGGGGCGTGCTCG < NB501016:282:H2V7GAFX2:2:21107:19429:20090/151‑1 (MQ=60)
CACACGCGAGGTTTTCTTCGCCGAGGAAGTTCAGCACCACCGCAAGGTCGCGGCG‑‑GCGCGCTGTCGTCATCGATCAGCAGAATCTTGGTTTCACGCCACATGCAATAGCAACTTCCCTAGTCATATCGGCGCCCTGCAGGGGCGTGCTCG > NB501016:282:H2V7GAFX2:2:11107:9249:11552/1‑150 (MQ=60)
CGCGAGGTTTTCTTCGCCGAGGAAGTTCAGCACCACCGCAAGGTCGCGGCG‑‑GCGCGCTGTCGTCATCGATCAGCAGAATCTTGGTTTCACGCCACATGCAATAGCAACTTCCCTAGTCATATCGGCGCCCTGCAGGGGCGTGCTCGACATC < NB501016:282:H2V7GAFX2:1:11312:23677:19727/151‑1 (MQ=60)
GCGAGGTTTTCTTCGCCGAGGAAGTTCAGCACCACCGCAAGGTCGCGGCG‑‑GCGCGCTGTCGTCATCGATCAGCAGAATCTTGGTTTCACGCCACATGCAATAGCAACTTCCCTAGTCATATCGGCGCCCTGCAGGGGCGTGCTCGACATCA < NB501016:282:H2V7GAFX2:3:11512:22350:12985/151‑1 (MQ=60)
TCGCCGAGGAAGTTCAGCACCACCGCAAGGTCGCGGCG‑‑GCGCGCTGTCGTCATCGATCAGCAGAATCTTGGTTTCACGCCACATGCAATAGCAACTTCCCTAGTCATATCGGCGCCCTGCAGGGGCGTGCTCGACATCATTCCGACTG < NB501016:282:H2V7GAFX2:4:11408:26326:11978/148‑1 (MQ=60)
CGAGGAAGTTCAGCACCACCGCAAGGTCGCGGCG‑‑GCGCGCTGTCGTCATCGATCAGCAGAATCTTGGTTTCACGCCACATGCAATAGCAACTTCCCTAGTCATATCGGCGCCCTGCAGGGGCGTGCTCGACATCATTCCGACTGAATGGTC < NB501016:282:H2V7GAFX2:3:11405:1497:8649/151‑1 (MQ=60)
GAGGAAGTTCAGCACCACCGCAAGGTCGCGGCG‑‑GCGCGCTGTCGTCATCGATCAGCAGAATCTTGGTTTCACGCCACATGCAATAGCAACTTCCCTAGTCATATCGGCGCCCTGCAGGGGCGTGCTCGACATCATTCCGACTGAATGGTC > NB501016:282:H2V7GAFX2:2:21304:3127:16955/1‑150 (MQ=60)
GAGGAAGTTCAGCACCACCGCAAGGTCGCGGCG‑‑GCGCGCTGTCGTCATCGATCAGCAGAATCTTGGTTTCACGCCACATGCAATAGCAACTTCCCTAGTCATATCGGCGCCCTGCAGGGGCGTGCTCGACATCATTCC < NB501016:282:H2V7GAFX2:3:21601:3659:11877/138‑1 (MQ=60)
GTTCAGCACCACCGCAAGGTCGCGGCG‑‑GCGCGCTGTCGTCATCGATCAGCAGAATCTTGGTTTCACGCCACATGCAATAGCAACTTCCCTAGTCATATCGGCGCCCTGCAGGGGCGTGCTCGACATCATTCCGACTGAATGGTCAGTGTTC < NB501016:282:H2V7GAFX2:1:11110:18169:17508/151‑1 (MQ=60)
TTCAGCACCACCGCAAGGTCGCGGCG‑‑GCGCGCTGTCGTCATCGATCAGCAGAATCTTGGTTTCACGCCACATGCAATAGCAACTTCCCTAGTCATATCGGCGCCCTGCAGGGGCGTGCTCGACATCATTCCGACTGAATGGTCAGTGTTCG > NB501016:282:H2V7GAFX2:3:11402:19570:15589/1‑151 (MQ=60)
ACCACCGCAAGGTCGCGGCG‑‑GCGCGCTGTCGTCATCGATCAGCAGAATCTTGGTTTCACGCCACATGCAATAGCAACTTCCCTAGTCATATCGGCGCCCTGCAGGGGCGTGCTCGACATCATTCCGACTGAATGGTCAGTGTTCGGACGTC < NB501016:282:H2V7GAFX2:1:11208:5169:10785/151‑1 (MQ=60)
ACCGCAAGGTCGCGGCG‑‑GCGCGCTGTCGTCATCGATCAGCAGAATCTTGGTTTAACGCCACATGCAATAGCAACTTCCCTAGTCATATCGGCGCCCTGCAGGGGCGTGCTCGACATCATTCCGACTGAATGGTCAGTGTTCGGACGTCTG > NB501016:282:H2V7GAFX2:1:21104:5777:7079/1‑150 (MQ=60)
CCGCAAGGTCACGGCG‑‑GCGCGCTGTCGTCATCGATCAGCAGAATCTTGGTTTCACGCCACATGCAATAGCAACTTCCCTAGTCATATCGGCGCCCTGCAGGGGCGTGCTCGACATCATTCCGACTGAATGGTCAGTGTTCGGACGTCTGAA < NB501016:282:H2V7GAFX2:2:21212:16515:8020/151‑1 (MQ=60)
CGCAAGGTCGCGGCG‑‑GCGCGCTGTCGTCATCGATCAGCAGAATCTTGGTTTCACGCCACATGCAATAGCAACTTCCCTAGTCATATCGGCGCCCTGCAGGGGCGTGCTCGACATCATTCCGACTGAATGGTCAGTGTTCGGACGTCTGAA > NB501016:282:H2V7GAFX2:4:21408:24454:14723/1‑150 (MQ=60)
AGGTCGCGGCG‑‑GCGCGCTGTCGTCATCGATCAGCAGAATCTTGGTTTCACGCCACATGCAATAGCAACTTCCCTAGTCATATCGGCGCCCTGCAGGGGCGTGCTCGACATCATTCCGACTGAATGGTCAGTGTTCGGACGTCTGATATTCG < NB501016:282:H2V7GAFX2:4:11601:22877:11747/151‑1 (MQ=60)
GGTCGCGGCG‑‑GCGCGCTGTCGTCATCGATCAGCAGAATCTTGGTTTCACGCCACATGCAATAGCAACTTCCCTAGTCATATCGGCGCCCTGCAGGGGCGTGCTCGACATCATTCCGACTGAATGGTCAGTGTTCGGACGTCTGAAATTCGA < NB501016:282:H2V7GAFX2:3:11602:9936:18128/151‑1 (MQ=60)
CGGCG‑‑GCGCGCTGTCGTCATCGATCAGCAGAATCTTGGTTTCACGCCACATGCAATAGCAACTTCCCTAGTCATATCGGCGCCCTGCAGGGGCGTGCTCGACATCATTCCGACTGAATGGTCAGTGTTCGGACGTCTGAAATTCGAAAACA < NB501016:282:H2V7GAFX2:3:11601:1897:1276/151‑1 (MQ=60)
cgGCGCGCTGTCGTCATCGATCAGCAGAATCTTGGTTTCACGCCACATGCAATAGCAACTTCCCTAGTCATATCGGCGCCCTGCAGGGGCGTGCTCGACATCATTCCGACTGAATGGTCAGTGTTCGGACGTCTGAAATTCGAAAACAGCC > NB501016:282:H2V7GAFX2:2:11206:21883:4341/3‑151 (MQ=60)
CGCGCTGTCGTCATCGATCAGCAGAATCTTGGTTTCACGCCTCATGCAATAGCAACTTCCCTAGTCATATCGGCGCCCTGCAGGGGCGTGCTCGACATCATTCCGACTGAATGGTCAGTGTTCGGACGTCTGAAATTCGAAAACAGCCACT < NB501016:282:H2V7GAFX2:4:11406:13616:14094/151‑1 (MQ=60)
CGCGCTGTCGTCATCGATCAGCAGAATCTTGGTTTCACGCCACATGCAATAGCAACTTCCCTAGTCATATCGGCGCCCTGCAGGGGCGTGCTCGACATCATTCCGACTGAATGGTCAGTGTTCGGACGTCTGAAATTCGAAAACAGCCACT < NB501016:282:H2V7GAFX2:2:21107:14745:5555/151‑1 (MQ=60)
CGCGCTGTCGTCATCGATCAGCAGAATCTTGGTTTCACGCCACATGCAATAGCAACTTCCCTAGTCATATCGGCGCCCTGCAGGGGCGTGCTCGACATCATTCCGACTGAATGGTCAGTGTTCGGACGTCTGAAATTCGAAAACAGCCACT < NB501016:282:H2V7GAFX2:1:11209:22287:19047/151‑1 (MQ=60)
CGCTGTCGTCATCGATCAGCAGAATCTTGGTTTCACGCCACATGCAATAGCAACTTCCCTAGTCATATCGGCGCCCTGCAGGGGCGTGCTCGACATCATTCCGACTGAATGGTCAGTGTTCGGACGTCTGAAATTCGAAAACAGCCACTAG < NB501016:282:H2V7GAFX2:4:11510:14588:8586/151‑1 (MQ=60)
GCTGTCGTCATCGATCAGCAGAATCTTGGTTTCACGCCACATGCAATAGCAACTTCCCTAGTCATATCGGCGCCCTGCAGGGGCGTGCTCGACATCATTCCGACTGAATGGTCAGTGTTCGGACGTCTGAAATTCGAAAACAGCCACTAGT > NB501016:282:H2V7GAFX2:2:11310:19206:19027/1‑151 (MQ=60)
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GCCCGGAGCATTCACGGTGCCGATGAGCACGCACAGCACTTCGCGGCTCGAGGACAATGGCTCGACCGCCTGCTGCCAGTCATGGCTGGCACACGCGAGGTTTTCTTCGCCGAGGAAGTTCAGCACCACCGCAAGGTCGCGGCGGCGCGCGCTGTCGTCATCGATCAGCAGAATCTTGGTTTCACGCCACATGCAATAGCAACTTCCCTAGTCATATCGGCGCCCTGCAGGGGCGTGCTCGACATCATTCCGACTGAATGGTCAGTGTTCGGACGTCTGAAATTCGAAAACAGCCACTAGT > NC_002947_CJ‑RC/4966869‑4967169
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| Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 0 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
