Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A3 F54 I1 R1
|
60 |
79.7 |
3402854 |
98.4% |
3348408 |
145.9 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| RA |
NC_002947_CJ‑RC |
5,677,566 |
+G |
intergenic (+113/+27) |
rhlE‑II → / ← yceI |
ATP‑dependent RNA helicase/polyisoprene‑binding acidic stress response factor |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NC_002947_CJ‑RC | 5,677,565 | 1 | . | G | 98.7%
| 277.3
/ ‑3.3
| 78 | intergenic (+112/+28) | rhlE‑II/yceI | ATP‑dependent RNA helicase/polyisoprene‑binding acidic stress response factor |
| Reads supporting (aligned to +/- strand): ref base . (0/1); new base G (43/34); total (43/35) |
| Fisher's exact test for biased strand distribution p-value = 4.49e-01 |
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 8.63e-01 |
GTGAGCGCCCAGCGCTGCTGACCCGCAAGGGCTGATAGAAGTACCGAGGGGGCTGCTTCGCAGCCCTATCACGACACAAGGCCGCTCCTGCAGAGAATTTCTTGATCTCTACAGGAGCGGCCTTGTGTCGTGATAGGGCCGCAA‑AGC‑GCGCCCTCGGTTTTCAGCTGGCAGAAATTACTTCTGCTTCACACCTTCGACACTGATATCCAGGTCCAGGGTCTGCGAAGTAGCACCCGGGCCTTTGATGCCGAAGTCGTTCAGGTTCAGCGTGGTGGTGGCGTTGAAGCCA > NC_002947_CJ‑RC/5677419‑5677707
|
gTGAGCGCCCAGCGCTGCTGACCCGCAAGGGCTGATAGAAGTCCCGAGGGGGCTGCTTCGCAGCCCTATCACGACACAAGGCCGCTCCTGCAGAGAATTTCTTGATCTCTACAGGAGCGGCCTTGTGTCGTGATAGGGCCGCAA‑Agc‑gg < 1:19513/149‑2 (MQ=255)
gAGCGCCCAGCGCTGCTGACCCGCACGGGCTGATAGAAGTCCCGCGGGGGCGGCTTCGCAGCCCTAGCCCGACACAAGGCCGCTCCTACAGAGAATTTCTTGATCTCTACAGGAGCGGCCTTGTGTCGTGATAGGGCCGCAA‑Agc‑ggcc < 7:306470/149‑4 (MQ=38)
aGCGCCCAGCGCGGCTGACCCGCAAGGGCTGATAGAAGTACCGAGGGGGCTGCTTCGCAGCCCTATCACGACACAAGGCCGCACCTACAGAGAATTTCTTCATCTCTACAGCAGCGGCCTTGTGTCGTGATAGGGCCGCAA‑Agc‑ggcc < 7:312614/148‑4 (MQ=38)
cgcCCAGCGCTGCTGACCCGCAAGGGCTGATAGAAGTACCGAGGGGGCTGCTTCGCAGCCCTATCACGACACAAGGCCGCTCCTGCAGAGAATTTCTTGATCTCTACAGGAGCGGCCTTGTGTCGTGATAGGGCCGCAA‑Agc‑ggccccc > 7:12847/1‑143 (MQ=255)
ccAGCGCTGCTGACCCGCAAGGGCTGATAGAAGTACCGAGGGGGCTGCTTCGCAGCCCTATCACGACACAAGGCCGCTCCTGCAGAGAATTTCTTGATCTCTACAGGAGCGGCCTTGTGTCGTGATAGGGCCGCAA‑AGCGGCCCCCTCg < 5:198046/149‑1 (MQ=255)
cAGCGCTGCTGACCCGCAAGGGCTGATAGAAGTACCGAGGGGGCTGCTTCGCAGCCCTATCACGACACAAGGCCGCTCCTGCAGAGAATTTCTTGATCTCTACAGGAGCGGCCTTGTGTCGTGATAGGGCCGCAA‑AGCGGCCCCCTCgg > 1:18596/1‑149 (MQ=255)
tgctgACCCGCAAGGGCTGATAGAAGTACCGAGGGGGCTGCTTCGCAGCCCTATCACGACACAAGGCCGCTCCTGCAGAGAATTTCTTGATCTCTACAGGAGCGGCCTTGTGTCGTGATAGGGCAGCAA‑AGCGGCCCCCTCGGtttt > 8:43742/1‑147 (MQ=255)
gACCCGCAAGGGCTGATAGAAGTACCGAGGGGGCTGCTTCGCAGCCCTATCACGACACAAGGCCGCTCCTGCAGAGAATTTCTTGATGTCTACAGGAGCGGCCTTGTGTCGTGATAGGGCCGCAA‑AGCGGCCCCCTCGGTTTTCAGCTg > 5:300878/1‑149 (MQ=255)
aCCCGCATGGGCTTATAGAAGTACCGCGGGGGCTGCTTCGCAGCCGTATCAGGACACAAGGCCGCTCCTGCTGAGATTTTCTTGATCTCTACAGGAGCGGCCTTGTGTCGTGATAGGGCCGCAA‑AGCGGCCCCCTCGGTTTTCAGCTgg < 4:150794/149‑1 (MQ=25)
cGCAAGGGCTGATAGAAGTACCGAGGGGGCTGCTTCGCAGCCCTATCACGACACAAGGCCGCTCCTGCAGAGAATTTCTTGATCTCTACAGGAGCGGCCTTGTGTCGTGATAGGGCCGCAA‑AGCGGCCCCCTCGGTTTTCAGCTgg > 6:366896/1‑146 (MQ=255)
gCAAGGGCTGATAGAAGTACCGAGGGGGCTGCTTCGCAGCCCTATCACGACACAAGGCCGCTCCTGCAGAGAATTTCTTGATCTCTACAGGAGCGGCCTTGTGTCGTGATAGGGCCGCAA‑AGCGGCCCCCTCGGTTTTCAGCTGGCAg > 8:430580/1‑148 (MQ=255)
cAAGGGCTGATAGAAGTACCGAGGGGGCTGCTTCGCAGCCCTATCACGACACAAGGCCGCTCCTGCAGAGAATTTGTTGATCTCTACAGGAGCGGCCTTGTGTCGTGATAGGGCCGCAA‑AGCGGCCCCCTCGGTGTTCAGCTGGCAGa > 5:332984/1‑148 (MQ=37)
gATAGAAGTACCGAGGGGGCTGCTTCGCAGCCCTATCACGACACAAGGCCGCTCCTGCAGAGAATTTATTGATCTCTACAGGAGCGGCCTTGTGTCGTGATAGGGCCGCAA‑AGCGGCCCCCTCGGTTTTCAGCTGGCAGAAATTACTTc > 6:259892/1‑149 (MQ=255)
tAGAAGTACCGAGGGGGCTGCTTCGCAGCCCTATCACGACACAAGGCCGCTCCTGCAGAGAATTTCTTGATCTCTACAGGAGCGGCCTTGTGTCGTGATAGGGCCGCAA‑AGCGGCCCCCTCGGTTTTCAGCTGGCAGAAATTACTTCt < 7:303970/148‑1 (MQ=255)
gAAGTACCGAGGGGGCTGCTTCGCAGCCCTATCACGACACAAGGCCGCTCCTGCAGAGAATTTCTTGATCTCTACAGGAGCGGCCTTGTGTCGTGATAGGGCCGCAA‑AGCGGCCCCCTCGGTTTTCAGCTGGCAGAAATTACTTCTGc < 5:138437/148‑1 (MQ=255)
gAAGTACCGAGGGGGCTGCTTCGCAGCCCTATCACGACACAAGGCCGCTCCTGCAGAGAATTTCTTGATCTCTACAGGAGCGGCCTTGTGTCGTGATAGGGCCGCAA‑AGCGGCCCCCTCGGTTTTCAGCTGGCAGAAATTACTTCTGc < 1:55645/148‑1 (MQ=255)
caagacccGCGGGGGCTGCTTCGCAGCCCTACCACGACACAAGGCCGCTCCTGCAGAGAATTTCTTGATCTCTACAGGAGCGGCCTTGTGTCGTGATAGGGCCGCAA‑AGCGGCCCCCTCGGTTTTCAGCTGGCAGAAATTACTTCTGc < 2:150650/142‑1 (MQ=37)
aaGTACCGAGGGGGCTGCTTCGCAGCCCTATCACGACACAAGGCCGCTCCTGCAGAGAATTTCTTGATCTCTACAGGAGCGGCCTTGTGTCGTGATAGGGCCGCAA‑AGCGGCCCCCTCGGTTTTCAGCTGGCAGAAATTACTTCTGCtt > 6:381117/1‑149 (MQ=255)
ttcccGAGGGGGCTGCTTCGCAGCCCTAGAACGACACAAGGCCGCGCCTGCAGATAATTTCTTGATCTCTACAGGAGCGGCCTTGTGCCGTGATAGGGCCGCAA‑AGCGGCCCCCTCGGTTTTCAGCTGGCAGAAATTACTTCTGCTTca < 6:54532/146‑1 (MQ=255)
aCCGTGGGGGCTGATTCGCAGCCCTATCATGTCTCAAGGCGGCTCCTGCAGAGATTTTCTTGTTCTGTTCATGAGCGGCCTTGTGTGGTGATTGGGCCGCAA‑TGCGGCCCCCTGGGTTTTCAGCTGGCAGAAATTACTTCTGCTTcac < 6:19089/148‑1 (MQ=255)
ccGAGGGGGCTGCTTCGCAGCCCTATCACGACACAAGGCCGCTCCTGCAGAGAATTTCTTGATCTCTACAGGAGCGGCCTTGTGTCGTGATAGGGCCGCAA‑AGCGGCCCCCTCGGTTTTCAGCTGGCAGAAATTACTTCTGCTTCacac > 5:396458/1‑149 (MQ=255)
aGGGGGCTGCTTCGCAGCCCTATCACGACACAAGGCCGCTCCTGCAGAGAATTTGTTGATCTCTACAGGAGCGGCCTTGTGTCGTGCTAGGGCCGCAA‑AGCGGCCCCCTCGGGTTTGAGCTGGCAGAAATTAATTCTGCTTCACACCtt > 5:260777/1‑149 (MQ=37)
gggggCTGCTTCGCAGCCCTATCACGACACAAGGCCGCTCCTGCAGAGAATTTCTTGATCTCTACAGGAGCGGCCTTGTGTCGTGATAGGGCCGCAA‑AGCGGCCCCCTCGGTTTTCAGCTGGCAGAAATTACTTCTGCTTCACACCTTc < 5:331688/149‑1 (MQ=255)
gggCTGCTTCGCAGCCCTATCACGACACAAGGCCGCTCCTGCAGATAATTTCTTGATCTCTACAGGAGCGGCCTTGTGTCGTGATAGGGCCGCAA‑AGCGGCCCCCTCGGTTTTCAGCTGGCAGAAATTACTTCTGCTTCACACCTTCGa < 7:348372/149‑1 (MQ=255)
gctgctTCGCAGCCCTATCACGACACAAGGCCGCTCCTGCAGAGAATTTCTTGATCTCTACAGGAGCGGCCTTGTGTCGTGATAGGGCCGCAA‑AGCGGCCCCCTCGGTTTTCAGCTGGCAGAAATTACTTCTGCTTCACACCTTCGaca < 4:312343/149‑1 (MQ=255)
gctgctTCGCAGCCCTATCACGACACAAGGCCGCTCCTGCAGAGAATTTCTTGATCTCTACAGGAGCGGCCTTGTGTCGTGATAGGGCCGCAA‑AGCGGCCCCCTCGGTTTTCAGCTGGCAGAAATTACTTCTGCTTCACACCTTCGaca > 7:236530/1‑149 (MQ=255)
tgctTCGCAGCCCTATCACGACACAAGGCCGCTCCTGCAGAGAATTTCTTGATCTCTACAGGAGCGGCCTTGTGTCGTGATAGGGCCGCAA‑AGCGGCCCCCTCGGTTTTCAGCTGGCAGAAATTACTTCTGCTTCACACCTTCGACACt > 5:253209/1‑149 (MQ=255)
ctTCGCAGCCCTATCACGACACAAGGCCGCTCCTGCAGAGAATTTCTTGATCTCTACAGGAGCGGCCTTGTGTCGTGATAGGGCCGCAA‑AGCGGCCCCCTCGGTTTTCAGCTGGCAGAAATTACTTCTGCTTCACACCTTCGACACt < 5:211414/147‑1 (MQ=255)
cTATCACGACACAAGGCCGCTCCTGCAGAGAATTTCTTGATCTCTACAGGAGCGGCCTTGTGTCGTGATAGGGCCGCAA‑AGCGGCCCCCTCGGTTTTGAGCTGGCAGAAATTACTTCTGCTTCACACCTTCGACACTGATAtccaggtc > 5:370087/1‑149 (MQ=255)
aTCACGACACAAGGCCGCTCCTGCAGAGAATTTCTTGATCTCTACAGGAGCGGCCTTGTGTCGTGATAGGGCCGCAA‑AGCGGCCCCCTCGGTTTTCAGCTGGCAGAAATTACTTCTGCTTCACACCTTCGACACTGATAtccaggtc > 2:372416/1‑147 (MQ=255)
cACGACACAAGGCCGCTCCTGCAGAGAATTTCTTGATCTCTACAGGAGCGGCCTTGTGTCGTGATAGGGCCGCAA‑AGCGGCCCCCTCGGTTTTCAGCTGGCAGAAATTACTTCTGCTTCACACCTTCGACACTGATAtccaggtccagg > 2:116773/1‑149 (MQ=255)
cACGACACAAGGCCGATCCTGCAGAGAATTTCTTGATCTCTACAGGAGCGGCCTTGTGTCGTGATAGGGCCGCAA‑AGCGGCCCCCTCGGTTTTCAGCTGGCAGAAATTACTTCTGCTTCACACCTTCGACACTGATAtccaggtccagg < 1:126010/149‑1 (MQ=255)
actacacAAGCCCGCTCCTGCAGATAATTTCTTGATCTCTACCGGAGCGGCTTTGTGTGGTTATAGGGCCGCAACGGG‑GCCCCCTCGGTTTTCAGCTGGCAGAAATTACTTCTGCTTCACACCTTCGACACTGATAtcc < 4:162871/136‑1 (MQ=255)
aCGACACAAGGCCGCTCCTGCAGAGAATTTCTTGATCTCTACAGGAGCGGCCTTGTGTCGTGATAGGGCCGCAA‑AGCGGCCCCCTCGGTTTTCAGCTGGCAGAAATTACTTCTGCTTCACACCTTCGACACTGATATCCAGGTCCAggg > 7:189600/1‑149 (MQ=255)
aCGACACAAGGCCGCTCCTGCAGAGAATTTCTTGATCTCTACAGGAGCGGCCTTGTGTCGTGATAGGGCCGCAA‑AGCGGCCCCCTCGGGTTTCAGCTGGCAGAAATTACTTCTGCTTCACACCTTCGACACTGATAtcc > 3:162871/1‑139 (MQ=255)
acaAGGCCGCTCCTGCAGAGAATTTCTTGATCTCTACAGGAGCGGCCTTGTGTCGTGATAGGGCCGCAA‑AGCGGCCCCCTCGGTTTTCAGCTGGCAGAAATTACTTCTGCTTCACACCTTCGACACTGATATCCAGGTCCAGGGTCTGc < 4:239767/149‑1 (MQ=255)
aGGCCGCTCCTGCAGAGAATTTCTTGATCTCTACAGGAGCGGCCTTGTGTCGTGATAGGGCCGCAA‑AGCGGCCCCCTCGGTTTTCAGCTGGCAGAAATTACTTCTGCTTCACACCTTCGACACTGATATCCAGGTCCAGGGTCTGCg > 8:270853/1‑147 (MQ=255)
cGCTCCTGCAGAGAATTTCTTGATCTCTACAGGAGCGGCCTTGTGTCGTGATAGGGCCGCAA‑AGCGGCCCCCTCg > 5:211211/1‑75 (MQ=21)
cGCTCCTGCAGAGAATTTCTTGATCTCTACAGGAGCGGCCTTGTGTCGTGATAGGGCCGCAA‑AGCGGCCCCCTCg < 6:211211/75‑1 (MQ=21)
agagAATTTCTTGATCTCTACAGGAGCGGCCTTGTGTCGTGATAGGGCCGCAA‑AGCGGCCCCCTCGGTTTTCAGCTGGCAGAAATTACTTCTGCTTCACACCTTCGACACTGATATCCAGGTCCAGGGTCTGCGAAGTATCACCCGGGc > 5:360888/1‑149 (MQ=255)
gagaATTTCTTGATCTCTACAGGAGCGGCCTTGTGTCGTGATAGGGCCGCAA‑AGCGGCCCCCTCGGTTTTCAGCTGGCAGAAATTACTTATGCATCACACCTTCGACACTGATATCAAGGTCCAGGGTCTTCGAAGTAGCACCCCGGcc > 3:231405/1‑149 (MQ=38)
agaATTTCTTGATCTCTACAGGAGCGGCCTTGTGTCGTGATAGGGCCGCAA‑AGCGGCCCCCTCGGTTTTCAGCTGGCAGAAATTACTTCTGCTTCACACCTTCGACACTGATATCCAGGTCCAGGGTCTGCGAAGTAGCACCCGGGCCt > 2:413927/1‑149 (MQ=255)
aTTTCTTGATCTCTACAGGAGCGGCCTTGTGTCGTGATAGGGCCGCAA‑AGCGGCCCCCTCGGTTTTCAGCTGGCAGAAATTACTTCTGCTTCACACCTTCGACACTGATATCCAGGTCCAGGGTCTGCGAAGTAGCACCCGGGCCTTTg < 8:189600/149‑1 (MQ=255)
cTTGATCTCTACAGGAGCGGCCTTGTGTCGTGATAGGGCCGCAA‑AGCGGCCCCCTCGGTTTTCAGCTGGCAGAAATTACTTCTGCTTCACACCTTCGACACTGATATCCAGGTCCAGGGTCTGCGAAGTAGCACCCgg > 7:412178/1‑138 (MQ=255)
cTTGATCTCTACAGGAGCGGCCTTGTGTCGTGATAGGGCCGCAA‑AGCGGCCCCCTCGGTTTTCAGCTGGCAGAAATTACTTCTGCTTCACACCTTCGACACTGATATCCAGGTCCAGGGTCTGCGAAGTAGCACCCgg < 8:412178/138‑1 (MQ=255)
tctcTACAGGAGCGGCCTTGTGTCGTGATAGGGCCGCAA‑AGCGGCCCCCTCGGTTTTCAGCTGGCAGAAATTACTTCTGCTTCACACCTTCGACACTGATATCCAGGTCCAGGGTCTGCGAAGTAGCACCCGGGCCTTTGATGCCGAAg > 8:173306/1‑149 (MQ=255)
tctcTACAGGAGCGGCCTTGTGTCGTGATAGGGCCGCAA‑AGCGGCCCCCTCGGTTTTCAGCTGGCAGAAATTACTTATGCTTCACACCTTAGACACTGATATCCAGGTCCAGGGTCTGCGAAGTAGCACCCGGGCCTTTGATGCCGAAg > 1:343898/1‑149 (MQ=39)
tACCGGAGCGGCCTTGTGTCGTGATAGGGCCGCAA‑AGCGGCCCCCTCGGTTTTCAGCTGGCTGAAATTACTTCTGCTTCACACCTTCGACACTGATATCCAGGTCCATGGTCTGCGAAGTAGCACCCGGGCCTTTGATGCCGaa < 5:294783/144‑1 (MQ=39)
tACAGGAGCGGCCTTGTGTCGTGATAGGGCCGCAA‑AGCGGCCCCCTCGGTTTTCAGCTGGCAGAAATTACTTCTGCTTCACACCTTCGACACTGATATCCAGGTCCAGGGTCTGCGAAGTAGCACCCGGGCCTTTGATGCCGaa < 5:366896/144‑1 (MQ=255)
tACAGGAGCGGCCTTGTGTCGTGATAGGGCCGCAA‑AGCGGCCCCCTCGGTTTTCAGCTGGCAGAAATTACTTCTGCTTCACACCTTCGACACTGATATCCAGGTCCAGGGTCTGCGAAGTAGCACCCGGGCCTTTGATGCCGaa < 5:259892/144‑1 (MQ=255)
tACAGGAGCGGCCTTGTGTCGTGATAGGGCCGCAA‑AGCGGCCCCCTCGGTTTTCAGCTGGCAGAAATTACTTCTGCTTCACACCTTCGACACTGATATCCAGGTCCAGGGTCTGCGAAGTAGCACCCGGGCCTTTGATGCCGAAGTc < 7:63418/147‑1 (MQ=255)
cAGGAGCGGCCTTGTGTCGTGATAGGGCCGCAA‑AGCGGCCCCCTCGGTTTTCAGCTGGCAGAAATTACTTCTGCTTCACACCTTCGACACTGATATCCAGGTCCAGGGTCTGCGAAGTAGCACCCGGGCCTTTGATGCCGAAGTCgttc < 2:61254/149‑1 (MQ=255)
cAGGAGCGGCCTTGTGTCGTGATAGGGCCGCAA‑AGCGGCCCCCTCGGTTTTCAGCTGGCAGAAATTACTTCTGCTTCACACCTTCGACACTGATATCCAGGTCCAGGGTCTGCGAAGTAGCACCCGGGCCTTTGATGCCGAAGTCgtt > 6:36075/1‑148 (MQ=255)
cAGGAGCGGCCTTGTGTCGTGATAGGGCCGCAA‑AGCGGCCCCCTCGGTTTTCAGCTGGCAGAAATTACTTCTGCTTCACACCTTCGACACTGATATCCAGGTCCAGGGTCTGCGAAGTAGCACCCGGGCCTTTGATGCCGAAGTCgtt > 1:240944/1‑148 (MQ=255)
ggAGCGGCCTTGTGTCGTGATAGGGCCGCAA‑AGCGGCCCCCTCGGTTTTCAGCTGGCAGAAATTACTTCTGCTTCACACCTTCGACACTGATATACAGGTCCAGGGTCTGCGAAGTAGCACCCGGGCCTTTGATGCCGAAGTCgttcag > 1:209949/1‑149 (MQ=255)
gAGCGGCCTTGTGTCGTGATAGGGCCGCAA‑AGCGGCCCCCTCGGTTTTCAGCTGGCAGAAATTACTTCTGCTTCACACCTTCGACACTGATATCCAGGTCCAGGGTCTGCGAAGTAGCACCCGGGCCTTTGATGCCGAAGTCgttcagg > 5:380197/1‑149 (MQ=255)
gAGCGGCCTTGTGTCGTGATAGGGCCGCAA‑AGCGGCCCCCTCGGTTTTCAGCTGGCAGAAATTACTTCTGCTTCACACCTTCGACACTGATATCCAGGTCCAGGGTCTGCGAAGTAGCACCCGGGCCTTTGATGCCGAAGTCgttcagg < 8:12847/149‑1 (MQ=255)
ccTTGTGTCGTGATAGGGCCGCAA‑AGCGGCCCCCTCGGTTTTCAGCTGGCAGAAATTACTTCTGCTTCACACCTTCGACACTGATATCCAGGTCCAGGGTCTGCGAAGTAGCACCCGGGCCTTTGATGCCGAAGTCGTTCAGGTTCAGc > 1:260238/1‑149 (MQ=255)
ccTTGTGTCGTGATAGGGCCGCAA‑AGCGGCCCCCTCGGTTTTCAGCTGGCAGAAATTACTTCTGCTTCACACCTTCGACACTGATATCCAGGTCCAGGGTCTGCGAAGTAGCACCCGGGCCTTTGATGCCGAAGTCGTTCAGGTTCAGc < 1:137090/149‑1 (MQ=255)
cTTGTGTCGTGATAGGGCCGCAA‑AGCGGCCCCCTCGGTTTTCAGCTGGCAGAAATTACTTCTGCTTCACACCTTCGACACTGATATCCAGGTCCAGGGTCTGCGAAGTAGCACCCGGGCCTTTGATGCCGAAGTCGTTCAGGTTCAGCg > 7:72172/1‑149 (MQ=255)
ttGTGTCGTGATAGGGCCGCAA‑AGCGGCCCCCTCGGTTTTCAGCTGGCAGAAAATACTTCTGCTTCACACCTTCGACACTGATATAAATGTCCAGGGTCTGCCAAGTAGCACCCGGGCCTTTGATGCCGAAGTCGTTCAGGTTCAGCgt > 7:348160/1‑149 (MQ=255)
gtgtCGTGATAGGGCGGCAA‑AGCGGCCCCCTCGGTTTTCAGCTGGCAGAAATTACTTCTGCTTCACACCTTCGACACTGATATCCAGGTCCAGGGTCTGCGAAGTAGCACCCGGGCCTTTGATGCCGAAGTCGTTCAGGTTCAGCgtg < 1:217536/148‑1 (MQ=255)
gtgtCGTGATAGGGCCGCAA‑AGCGGCCCCCTCGGTTTTCAGCTGGCAGAAATTACTTCTGCTTCACACCTTCGACACTGATATCCAGGTCCAGGGTCTGCGAAGTAGCACCCGGGCCTTTGATGCCGAAGTCGTTCAGGTTCAGCgtgg > 6:131398/1‑149 (MQ=255)
gtgtCGTGATAGGGCCGCAA‑AGCGGCCCCCTCGGTTTTCAGCTGGCAGAAATTACTTCTGCTTCACACCTTCGACACTGATATCCAGGTCCAGGGTCTGCGAAGTAGCACCCGGGCCTTTGATGCCGAAGTCGTTCAGGTTCAGCggg < 4:162605/148‑3 (MQ=255)
tgtCGTGATAGGGCCGCAA‑AGCGGCCCCCTCGGTTTTCAGCTGGCAGAAATTACTTCTGCTTCACACCTTCGACACTGATATCCAGGTCCAGGGTCTGCGAAGTAGCACCCGGGCCTTTGATGCCGAAGTCGTTCAGGTTCAGCgtggt > 1:116272/1‑149 (MQ=255)
tCGTGATAGGGCCGCAA‑AGCGGCCCCCTCGGTTTTCAGCTGGCAGAAATTACTTCTGCTTCACACCTTCGACACTGATATCCAGGTCCAGGGTCTGCGAAGTAGCACCCGGGCCTTTGATGCCGAAGTCGTTCAGGTTCAGCgtggtgg < 1:292539/149‑1 (MQ=255)
tCGTGATAGGGCCGCAA‑AGCGGCCCCCTCGGTTTTCAGCTGGCAGAAATTACTTCTGCTTCACACCTTCGACACTGATATCCAGGTCCAGGGTCTGCGAAGTAGCACCCGGGCCTTTGATGCCGAAGTCGTTCAGGTTCAGCgtggtgg > 6:206722/1‑149 (MQ=255)
tCGTGATAGGGCCGCAA‑AGCGGCCCCCTCGGTTTTCAGCTGGCAGAAATTACTTCTGCTTCACACCTTCGACACTGATATCCAGGTCCAGGGTCTGCGAAGTAGCACCCGGGCCTTTGATGCCGAAGTCGTTCAGGTTCAGCgtggtg < 1:48211/148‑1 (MQ=255)
tCGTGATAGGGCCGCAA‑AGCGGCCCCCTCGGTTTTCAGCTGGCAGAAATTACTTCTGCTTCACACCTTCGACACTGATATCCAGGTCCAGGGTCTGCGAAGTAGCACCCGGGCCTTTGATGCCGAAGTCGTTCAGGTTCAGCgtggtg < 6:260777/148‑1 (MQ=255)
gTGATAGGGCCGCAA‑AGCGGCCCCCTCGGTTTTCAGCTGGCAGAAATTACTTCTGCTTCTCACCTTCGACACTGATATCCAGGTCCAGGGTCTGCGTAGTAGCACCCGGGCCTTTGATGCCGAAGTCGTTCAGGTTCAGCgtggtggt < 4:373514/148‑1 (MQ=255)
gATAGGGCCGCAA‑AGCGGCCCCCTCGGTTTTCAGCTGGCAGAAATTACTTCTGCTTCACACCTTCGACACTGATATCCAGGTCCAGGGTCTGCGAAGTAGCACCCGGGCCTTTGATGCCGAAGTCGTTCAGGTTCAGCGTGGTGGTGGc > 6:58428/1‑149 (MQ=255)
aGGGCCGCAA‑AGCGGCCCCCTCGGTTTTCAGCTGGCAGAAATTACTTCTGCTTCACACCTTCGACACTGATATCCAGGTCCAGGGTCTGCGAAGTAGCACCCGGGCCTTTGATGCCGAAGTCGTTCAGGTTCAGCGTGGTGGTGGCGtt > 1:332595/1‑149 (MQ=255)
gggCCGCAA‑AGCGGCCCCCTCGGTTTTCAGCTGGCAGAAATTACTTCTGCTTCACACCTTCGACACTGATATCCAGGTCCAGGGTCTGCGAAGTAGCACCCGGGCCTTTGATGCCGAAGTCGTTCAGGTTCAGCGTGGTGGTGGCGtt > 1:96820/1‑148 (MQ=255)
gggCCGCAA‑AGCGGCCCCCTCGGTTTTCAGCTGGCAGAAATTACTTCTGCTTCACACCTTCGACACTGATATCCAGGTCCAGGGTCTGCGAAGTAGCACCCGGGCCTTTGATGCCGAAGTCGTTCAGGTTCAGCGTGGTGGTGGCGtt < 6:396458/148‑1 (MQ=255)
ggcggcAA‑AGCGGCCCCATCGGTTTTCAGCTGGCAGAAATTACTTCTGCTACACACCTTCGACACTGATATCCAGGTCCAGGGTCTGCGAAGTAGCACCCGGGCCTTTGATGCCGAAGTCGTTCAGGTTCAGCGTGGTGGTGGCGTTg < 1:320254/148‑1 (MQ=255)
gCCGCAA‑AGCGGCCCCCTCGGTTTTCAGCTGGCAGAAATTACTTCTGCTTCACACCTTCGACACTGATATCCAGGTCCAGGGTCTGCGAAGTAGCACCCGGGCCTTTGATGCCGAAGTCGTTCAGGTTCAGCGTGGTGGTGGCGTTg > 2:338626/1‑147 (MQ=255)
gCCGCAA‑AGCGGCCCCCTCGGTTTTCAGCTGGCAGAAATTACTTCTGCTTCACACCTTCGACACTGATATCCAGGTCCAGGGTCTGCGAAGTAGCACCCGGGCCTTTGATGCCGAAGTCGTTCAGGTTCAGCGTGGTGGTGGCGTTGaa < 6:253209/149‑1 (MQ=255)
gCCGCAA‑AGCGGCAACCTCGGTTTTCAGCTGGCAGAAATTACTTCTGCTTCACACCTTCGACACTGATATCCAGGTCCAGGGTCTGAGAAGTAGCACCCGGGCCTTTTATGCCGAAGTCGTTCAGGTTCAGCGTGGTGGTGGCGTTg > 8:175763/1‑147 (MQ=255)
ccGCAA‑AGCGGCCCCCTCGGTTTTCAGCTGGCAGAAATTACTTCTGCTTCACACCTTCGACACTGATATCCAGGTCCAGGGTCTGCGAAGTAGCACCCGGGCCTTTGATGCCGAAGTCGTTCAGGTTCAGCGTGGTGGTGGCGTTGAAg > 2:383183/1‑149 (MQ=255)
cGCAA‑AGCGGCCCCCTCGGTTTTCAGCTGGCAGAAATTACATCTGCTTCACACAATCGACACTGATATCCAGGTCCAGGGTCTGCGAAGTAGCACCCGGGCCTTTGATGCCGAAGTCGTTCAGGATCAGCGTGCTGGTAGCGTTGAAGc > 4:239469/1‑149 (MQ=255)
gCAA‑AGCGGCCCCCTCGGTTTTCAGCTGGCAGAAATTACTTCTGCTTCACACCTTCGACACTGATATCCAGGTCCAGGGTCTGCGAAGTAGCACCCGGGCCTTTGATGCCGAAGTCGTTCAGGTTCAGCGTGGTGGTGGCGTTGAAGc > 6:357501/1‑148 (MQ=255)
cAA‑AGCGGCCCCCTCGGTTTTCAGCTGGCAGAAATTACTTCTGCTTCACACCTTCGACACTGATATCCAGGTCCAGGGTCTGCGAAGTAGCACCCGGGCCTTTGATGCCGAAGTCGTTCAGGTTCAGCGTGGTGGTGGCGTTGAAGCCa < 1:383183/149‑1 (MQ=255)
|
GTGAGCGCCCAGCGCTGCTGACCCGCAAGGGCTGATAGAAGTACCGAGGGGGCTGCTTCGCAGCCCTATCACGACACAAGGCCGCTCCTGCAGAGAATTTCTTGATCTCTACAGGAGCGGCCTTGTGTCGTGATAGGGCCGCAA‑AGC‑GCGCCCTCGGTTTTCAGCTGGCAGAAATTACTTCTGCTTCACACCTTCGACACTGATATCCAGGTCCAGGGTCTGCGAAGTAGCACCCGGGCCTTTGATGCCGAAGTCGTTCAGGTTCAGCGTGGTGGTGGCGTTGAAGCCA > NC_002947_CJ‑RC/5677419‑5677707
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
BRESEQ :: bam2aln output
GGTGAGCGCCCAGCGCTGCTGACCCGCAAGGGCTGATAGAAGTACCGAGGGGGCTGCTTCGCAGCCCTATCACGACACAAGGCCGCTCCTGCAGAGAATTTCTTGATCTCTACAGGAGCGGCCTTGTGTCGTGATAGGGCCGCAAAGC‑GCGCCC‑‑TCGGTTTTCAGCTGGCAGAAATTACTTCTGCTTCACACCTTCGACACTGATATCCAGGTCCAGGGTCTGCGAAGTAGCACCCGGGCCTTTGATGCCGAAGTCGTTCAGGTTCAGCGTGGTGGTGGCGTTGAAGCCAG > NC_002947_CJ‑RC/5677418‑5677708
|
GGTGAGCGCCCAGCGCTGCTGACCCGCAAGGGCTGATAGAAGTCCCGAGGGGGCTGCTTCGCAGCCCTATCACGACACAAGGCCGCTCCTGCAGAGAATTTCTTGATCTCTACAGGAGCGGCCTTGTGTCGTGATAGGGCCGCAAAGC‑Ggc < NB501016:282:H2V7GAFX2:1:11104:22870:1867/151‑3 (MQ=60)
GGAGCGCCCAGCGCTGCTGACCCGCACGGGCTGATAGAAGTCCCGCGGGGGCGGCTTCGCAGCCCTAGCCCGACACAAGGCCGCTCCTACAGAGAATTTCTTGATCTCTACAGGAGCGGCCTTGTGTCGTGATAGGGCCGCAAAGC‑G‑GCCC < NB501016:282:H2V7GAFX2:4:21503:26623:5202/151‑1 (MQ=60)
GAGCGCCCAGCGCGGCTGACCCGCAAGGGCTGATAGAAGTACCGAGGGGGCTGCTTCGCAGCCCTATCACGACACAAGGCCGCACCTACAGAGAATTTCTTCATCTCTACAGCAGCGGCCTTGTGTCGTGATAGGGCCGCAAAGC‑G‑GCCC < NB501016:282:H2V7GAFX2:4:21504:1119:5209/150‑1 (MQ=60)
GCGCCCAGCGCTGCTGACCCGCAAGGGCTGATAGAAGTACCGAGGGGGCTGCTTCGCAGCCCTATCACGACACAAGGCCGCTCCTGCAGAGAATTTCTTGATCTCTACAGGAGCGGCCTTGTGTCGTGATAGGGCCGCAAAGC‑Ggcccccg > NB501016:282:H2V7GAFX2:4:11403:24320:2316/1‑144 (MQ=60)
CCCAGCGCTGCTGACCCGCAAGGGCTGATAGAAGTACCGAGGGGGCTGCTTCGCAGCCCTATCACGACACAAGGCCGCTCCTGCAGAGAATTTCTTGATCTCTACAGGAGCGGCCTTGTGTCGTGATAGGGCCGCAAAGCGGCCCCC‑‑TCGG < NB501016:282:H2V7GAFX2:3:11609:20299:15798/151‑1 (MQ=60)
CCAGCGCTGCTGACCCGCAAGGGCTGATAGAAGTACCGAGGGGGCTGCTTCGCAGCCCTATCACGACACAAGGCCGCTCCTGCAGAGAATTTCTTGATCTCTACAGGAGCGGCCTTGTGTCGTGATAGGGCCGCAAAGCGGCCCCC‑‑TCGGT > NB501016:282:H2V7GAFX2:1:11103:16315:18545/1‑151 (MQ=60)
TGACCCGCAAGGGCTGATAGAAGTACCGAGGGGGCTGCTTCGCAGCCCTATCACGACACAAGGCCGCTCCTGCAGAGAATTTCTTGATGTCTACAGGAGCGGCCTTGTGTCGTGATAGGGCCGCAAAGCGGCCCCC‑‑TCGGTTTTCAGCTGG > NB501016:282:H2V7GAFX2:3:21503:7629:16248/1‑151 (MQ=60)
GCAAGGGCTGATAGAAGTACCGAGGGGGCTGCTTCGCAGCCCTATCACGACACAAGGCCGCTCCTGCAGAGAATTTGTTGATCTCTACAGGAGCGGCCTTGTGTCGTGATAGGGCCGCAAAGCGGCCCCC‑‑TCGGTGTTCAGCTGGCAGAA > NB501016:282:H2V7GAFX2:3:21509:19765:9254/1‑150 (MQ=60)
ATAGAAGTACCGAGGGGGCTGCTTCGCAGCCCTATCACGACACAAGGCCGCTCCTGCAGAGAATTTCTTGATCTCTACAGGAGCGGCCTTGTGTCGTGATAGGGCCGCAAAGCGGCCCCC‑‑TCGGTTTTCAGCTGGCAGAAATTACTTCTG < NB501016:282:H2V7GAFX2:4:21502:6536:15782/150‑1 (MQ=60)
AGAAGTACCGAGGGGGCTGCTTCGCAGCCCTATCACGACACAAGGCCGCTCCTGCAGAGAATTTCTTGATCTCTACAGGAGCGGCCTTGTGTCGTGATAGGGCCGCAAAGCGGCCCCC‑‑TCGGTTTTCAGCTGGCAGAAATTACTTCTGCT < NB501016:282:H2V7GAFX2:1:11109:7968:14194/150‑1 (MQ=60)
AGAAGTACCGAGGGGGCTGCTTCGCAGCCCTATCACGACACAAGGCCGCTCCTGCAGAGAATTTCTTGATCTCTACAGGAGCGGCCTTGTGTCGTGATAGGGCCGCAAAGCGGCCCCC‑‑TCGGTTTTCAGCTGGCAGAAATTACTTCTGCT < NB501016:282:H2V7GAFX2:3:11512:18445:6302/150‑1 (MQ=60)
GAAGTACCGAGGGGGCTGCTTCGCCGCCCTATCACGACACAAGGCCGCTCCTGCAGCGAATGTCGTGCTCTCTACAGGAGCGGCCGTGTGTCGTGCTAGGGCCGCAAAGCGGCCCCC‑‑GCGGTGTTCAGCTGGCAGCAATTACgtcggcgtc > NB501016:282:H2V7GAFX2:4:11502:26156:3382/1‑142 (MQ=60)
ACCGAGGGGGCTGCTTCGCAGCCCTATCACGACACAAGGCCGCTCCTGCAGAGAATTTCTTGATCTCTACAGGAGCGGCCTTGTGTCGTGATAGGGCCGCAAAGCGGCCCCC‑‑TCGGTTTTCAGCTGGCAGAAATTACTTCTGCTTCACACC > NB501016:282:H2V7GAFX2:3:21607:12558:15074/1‑151 (MQ=60)
GAGGGGGCTGCTTCGCAGCCCTATCACGACACAAGGCCGCTCCTGCAGAGAATTTGTTGATCTCTACAGGAGCGGCCTTGTGTCGTGCTAGGGCCGCAAAGCGGCCCCC‑‑TCGGGTTTGAGCTGGCAGAAATTAATTCTGCTTCACACCTTC > NB501016:282:H2V7GAFX2:3:21408:17077:16338/1‑151 (MQ=60)
AGGGGGCTGCTTCGCAGCCCTATCACGACACAAGGCCGCTCCTGCAGAGAATTTCTTGATCTCTACAGGAGCGGCCTTGTGTCGTGATAGGGCCGCAAAGCGGCCCCC‑‑TCGGTTTTCAGCTGGCAGAAATTACTTCTGCTTCACACCTTCG < NB501016:282:H2V7GAFX2:3:21509:17701:5303/151‑1 (MQ=60)
GGGGCTGCTTCGCAGCCCTATCACGACACAAGGCCGCTCCTGCAGATAATTTCTTGATCTCTACAGGAGCGGCCTTGTGTCGTGATAGGGCCGCAAAGCGGCCCCC‑‑TCGGTTTTCAGCTGGCAGAAATTACTTCTGCTTCACACCTTCGAC < NB501016:282:H2V7GAFX2:4:21510:16620:1631/151‑1 (MQ=60)
GGCTGCTTCGCAGCCCTATCACGACACAAGGCCGCTCCTGCAGAGAATTTCTTGATCTCTACAGGAGCGGCCTTGTGTCGTGATAGGGCCGCAAAGCGGCCCCC‑‑TCGGTTTTCAGCTGGCAGAAATTACTTCTGCTTCACACCTTCGACAC > NB501016:282:H2V7GAFX2:4:21403:22460:19382/1‑151 (MQ=60)
CTGCTTCGCAGCCCTATCACGACACAAGGCCGCTCCTGCAGAGAATTTCTTGATCTCTACAGGAGCGGCCTTGTGTCGTGATAGGGCCGCAAAGCGGCCCCC‑‑TCGGTTTTCAGCTGGCAGAAATTACTTCTGCTTCACACCTTCGACACTG > NB501016:282:H2V7GAFX2:3:21407:18071:9432/1‑151 (MQ=60)
GCTTCGCAGCCCTATCACGACACAAGGCCGCTCCTGCAGAGAATTTCTTGATCTCTACAGGAGCGGCCTTGTGTCGTGATAGGGCCGCAAAGCGGCCCCC‑‑TCGGTTTTCAGCTGGCAGAAATTACTTCTGCTTCACACCTTCGACACTG < NB501016:282:H2V7GAFX2:3:11611:3508:18755/149‑1 (MQ=60)
CGCAGCCCTATCACGACACAAGGCCGCTCCTGCAGAGAATTTCTTGATCTCTACAGGAGCGGCCTTGTGTCGTGATAGGGCCGCAAAGCGGCCCCC‑‑TCGGGTTTGAGCTGGGAGAAATTACTTCTGCTTCACACCTTCGACACAGATATGC > NB501016:282:H2V7GAFX2:3:21507:19411:19673/1‑151 (MQ=60)
CCTATCACGACACAAGGCCGCTCCTGCAGAGAATTTCTTGATCTCTACAGGAGCGGCCTTGTGTCGTGATAGGGCCGCAAAGCGGCCCCC‑‑TCGGTTTTGAGCTGGCAGAAATTACTTCTGCTTCACACCTTCGACACTGATATCCAGGTCC > NB501016:282:H2V7GAFX2:3:21603:23858:10474/1‑151 (MQ=60)
ACACGACACAAGGCCGATCCTGCAGAGAATTTCTTGATCTCTACAGGAGCGGCCTTGTGTCGTGATAGGGCCGCAAAGCGGCCCCC‑‑TCGGTTTTCAGCTGGCAGAAATTACTTCTGCTTCACACCTTCGACACTGATATCCAGGTCCAGGG < NB501016:282:H2V7GAFX2:1:11209:8786:4661/151‑1 (MQ=60)
CACGACACAAGGCCGCTCCTGCAGAGAATTTCTTGATCTCTACAGGAGCGGCCTTGTGTCGTGATAGGGCCGCAAAGCGGCCCCC‑‑TCGGTTTTCAGCTGGCAGAAATTACTTCTGCTTCACACCTTCGACACTGATATCCAGGTCCAGGGT > NB501016:282:H2V7GAFX2:4:11608:12946:3059/1‑151 (MQ=60)
CACGACACAAGGCCGCTCCTGCAGAGAATTTCTTGATCTCTACAGGAGCGGCCTTGTGTCGTGATAGGGCCGCAAAGCGGCCCCC‑‑TCGGGTTTCAGCTGGCAGAAATTACTTCTGCTTCACACCTTCGACACTGATATCCA > NB501016:282:H2V7GAFX2:2:11304:19228:8594/1‑141 (MQ=60)
CCGCTCCTGCAGAGAATTTCTTGATCTCTACAGGAGCGGCCTTGTGTCGTGATAGGGCCGCAAAGCGGCCCCC‑‑TCGG > NB501016:282:H2V7GAFX2:3:11611:5210:18050/1‑77 (MQ=60)
cgctcctgtagagatcaagaaatTCTCTGCAGGAGCGGCCTTGTGTCGTGATAGGGCTGCGAAGCAGCCCCC‑‑TCGGTTTTCAGCTGGCAGAAATTACTTCTGCTTCACACCTTCGACACTGATATACAGGTCCAGGGTCTGCGAAGTAGC > NB501016:282:H2V7GAFX2:2:11104:5716:18829/24‑150 (MQ=32)
CAGAGAATTTCTTGATCTCTACAGGAGCGGCCTTGTGTCGTGATAGGGCCGCAAAGCGGCCCCC‑‑TCGGTTTTCAGCTGGCAGAAATTACTTCTGCTTCACACCTTCGACACTGATATCCAGGTCCAGGGTCTGCGAAGTATCACCCGGGCC > NB501016:282:H2V7GAFX2:3:21602:18429:2015/1‑151 (MQ=60)
AGAGAATTTCTTGATCTCTACAGGAGCGGCCTTGTGTCGTGATAGGGCCGCAAAGCGGCCCCC‑‑TCGGTTTTCAGCTGGCAGAAATTACTTATGCATCACACCTTCGACACTGATATCAAGGTCCAGGGTCTTCGAAGTAGCACCCCGGCCG > NB501016:282:H2V7GAFX2:2:21103:8099:13880/1‑151 (MQ=60)
TCTTGATCTCTACAGGAGCGGCCTTGTGTCGTGATAGGGCCGCAAAGCGGCCCCC‑‑TCGGTTTTCAGCTGGCAGAAATTACTTCTGCTTCACACCTTCGACACTGATATCCAGGTCCAGGGTCTGCGAAGTAGCACCCGGG > NB501016:282:H2V7GAFX2:4:21608:21613:15595/1‑140 (MQ=60)
ATCTCTACAGGAGCGGCCTTGTGTCGTGATAGGGCCGCAAAGCGGCCCCC‑‑TCGGTTTTCAGCTGGCAGAAATTACTTATGCTTCACACCTTAGACACTGATATCCAGGTCCAGGGTCTGCGAAGTAGCACCCGGGCCTTTGATGCCGAAGT > NB501016:282:H2V7GAFX2:1:21210:5779:3617/1‑151 (MQ=60)
CTACCGGAGCGGCCTTGTGTCGTGATAGGGCCGCAAAGCGGCCCCC‑‑TCGGTTTTCAGCTGGCTGAAATTACTTCTGCTTCACACCTTCGACACTGATATCCAGGTCCATGGTCTGCGAAGTAGCACCCGGGCCTTTGATGCCGAAC < NB501016:282:H2V7GAFX2:3:21502:21839:15592/146‑1 (MQ=60)
CTACAGGAGCGGCCTTGTGTCGTGATAGGGCCGCAAAGCGGCCCCC‑‑TCGGTTTTCAGCTGGCAGAAATTACTTCTGCTTCACACCTTCGACACTGATATCCAGGTCCAGGGTCTGCGAAGTAGCACCCGGGCCTTTGATGCCGAAGTCG < NB501016:282:H2V7GAFX2:4:11411:10485:1569/149‑1 (MQ=60)
CTACAGGAGCGGCCTTGTGTCGTGATAGGGCCGCAAAGCGGCCCCC‑‑TCGGTTTTCAGCTGGCAGAAATTACTTCTGCTTCACACCTTCGACACTGATATCCAGGTCCAGGGTCTGCGAAGTAGCACCCGGGCCTTTGATGCCGAAG < NB501016:282:H2V7GAFX2:3:21602:17977:19982/146‑1 (MQ=60)
CTACAGGAGCGGCCTTGTGTCGTGATAGGGCCGCAAAGCGGCCCCC‑‑TCGGTTTTCAGCTGGCAGAAATTACTTCTGCTTCACACCTTCGACACTGATATCCAGGTCCAGGGTCTGCGAAGTAGCACCCGGGCCTTTGATGCCGAAG < NB501016:282:H2V7GAFX2:3:21408:12312:13236/146‑1 (MQ=60)
ACAGGAGCGGCCTTGTGTCGTGATAGGGCCGCAAAGCGGCCCCC‑‑TCGGTTTTCAGCTGGCAGAAATTACTTCTGCTTCACACCTTCGACACTGATATCCAGGTCCAGGGTCTGCGAAGTAGCACCCGGGCCTTTGATGCCGAAGTCGTTC > NB501016:282:H2V7GAFX2:1:21104:9823:12304/1‑150 (MQ=60)
AGGAGCGGCCTTGTGTCGTGATAGGGCCGCAAAGCGGCCCCC‑‑TCGGTTTTCAGCTGGCAGAAATTACTTCTGCTTCACACCTTCGACACTGATATACACGTCCAGGGTCTGCGAAGTAGCACCCGCGCCTTTGATGCCGAAGTCGTTCAGG > NB501016:282:H2V7GAFX2:1:11311:21353:11426/1‑151 (MQ=60)
GGAGCGGCCTTGTGTCGTGATAGGGCCGCAAAGCGGCCCCC‑‑TCGGTTTTCAGCTGGCAGAAATTACTTCTGCTTCACACCTTCGACACTGATATCCAGGTCCAGGGTCTGCGAAGTAGCACCCGGGCCTTTGATGCCGAAGTCGTTCAGGT > NB501016:282:H2V7GAFX2:3:21605:22193:3016/1‑151 (MQ=60)
GCCTTGTGTCGTGATAGGGCCGCAAAGCGGCCCCC‑‑TCGGTTTTCAGCTGGCAGAAATTACTTCTGCTTCACACCTTCGACACTGATATCCAGGTCCAGGGTCTGCGAAGTAGCACCCGGGCCTTTGATGCCGAAGTCGTTCAGGTTCAGCG > NB501016:282:H2V7GAFX2:1:21107:14313:16199/1‑151 (MQ=60)
GCCTTGTGTCGTGATAGGGCCGCAAAGCGGCCCCC‑‑TCGGTTTTCAGCTGGCAGAAATTACTTCTGCTTCACACCTTCGACACTGATATCCAGGTCCAGGGTCTGCGAAGTAGCACCCGGGCCTTTGATGCCGAAGTCGTTCAGGTTCAGCG < NB501016:282:H2V7GAFX2:1:11211:17237:1976/151‑1 (MQ=60)
CCTTGTGTCGTGATAGGGCCGCAAAGCGGCCCCC‑‑TCGGTTTTCAGCTGGCAGAAATTACTTCTGCTTCACACCTTCGACACTGATATCCAGGTCCAGGGTCTGCGAAGTAGCACCCGGGCCTTTGATGCCGAAGTCGTTCAGGTTCAGCGT > NB501016:282:H2V7GAFX2:4:11412:16249:9295/1‑151 (MQ=60)
CTTGTGTCGTGATAGGGCCGCAAAGCGGCCCCC‑‑TCGGTTTTCAGCTGGCAGAAAATACTTCTGCTTCACACCTTCGACACTGATATAAATGTCCAGGGTCTGCCAAGTAGCACCCGGGCCTTTGATGCCGAAGTCGTTCAGGTTCAGCGTG > NB501016:282:H2V7GAFX2:4:21509:13021:20304/1‑151 (MQ=60)
TGTGTCGTGATAGGGCGGCAAAGCGGCCCCC‑‑TCGGTTTTCAGCTGGCAGAAATTACTTCTGCTTCACACCTTCGACACTGATATCCAGGTCCAGGGTCTGCGAAGTAGCACCCGGGCCTTTGATGCCGAAGTCGTTCAGGTTCAGCGTGG < NB501016:282:H2V7GAFX2:1:11312:20021:17920/150‑1 (MQ=60)
GTGTCGTGATAGGGCCGCAAAGCGGCCCCC‑‑TCGGTTTTCAGCTGGCAGAAATTACTTCTGCTTCACACCTTCGACACTGATATCCAGGTCCAGGGTCTGCGAAGTAGCACCCGGGCCTTTGATGCCGAAGTCGTTCAGGTTCAGCGTGGTG > NB501016:282:H2V7GAFX2:1:11207:17003:11869/1‑151 (MQ=60)
GTCGTGATAGGGCCGCAAAGCGGCCCCC‑‑TCGGTTTTCAGCTGGCAGAAATTACTTCTGCTTCACACCTTCGACACTGATATCCAGGTCCAGGGTCTGCGAAGTAGCACCCGGGCCTTTGATGCCGAAGTCGTTCAGGTTCAGCGTGGTGGT < NB501016:282:H2V7GAFX2:1:21201:12359:8825/151‑1 (MQ=60)
GTCGTGATAGGGCCGCAAAGCGGCCCCC‑‑TCGGTTTTCAGCTGGCAGAAATTACTTCTGCTTCACACCTTCGACACTGATATCCAGGTCCAGGGTCTGCGAAGTAGCACCCGGGCCTTTGATGCCGAAGTCGTTCAGGTTCAGCGTGGTGG < NB501016:282:H2V7GAFX2:1:11108:10818:10837/150‑1 (MQ=60)
TAGGGCCGCAAAGCGGCCCCC‑‑TCGGTTTTCAGCTGGCAGAAATTACTTCTGCTTCACACCTTCGACACTGATATCCAGGTCCAGGGTCTGCGAAGTAGCACCCGGGCCTTTGATGCCGAAGTCGTTCAGGTTCAGCGTGGTGGTGGCGTTG > NB501016:282:H2V7GAFX2:1:21208:21122:6112/1‑151 (MQ=60)
AGGGCCGCAAAGCGGCCCCC‑‑TCGGTTTTCAGCTGGCAGAAATTACTTCTGCTTCACACCTTCGACACTGATATCCAGGTCCAGGGTCTGCGAAGTAGCACCCGGGCCTTTGATGCCGAAGTCGTTCAGGTTCAGCGTGGTGGTGGCGTTG > NB501016:282:H2V7GAFX2:1:11204:4326:7523/1‑150 (MQ=60)
GGGCGGCAAAGC‑G‑GCCCCATCGGTTTTCAGCTGGCAGAAATTACTTCTGCTACACACCTTCGACACTGATATCCAGGTCCAGGGTCTGCGAAGTAGCACCCGGGCCTTTGATGCCGAAGTCGTTCAGGTTCAGCGTGGTGGTGGCGTTGA < NB501016:282:H2V7GAFX2:1:21206:11536:2347/150‑1 (MQ=60)
GCAAAGCGGCCCCC‑‑TCGGTTTTCAGCTGGCAGAAATTACTTCTGCTTCACACCTTCGACACTGATATCCAGGTCCAGGGTCTGCGAAGTAGCACCCGGGCCTTTGATGCCGAAGTCGTTCAGGTTCAGCGTGGTGGTGGCGTTGAAGCCAG < NB501016:282:H2V7GAFX2:1:21305:9067:14105/151‑1 (MQ=60)
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GGTGAGCGCCCAGCGCTGCTGACCCGCAAGGGCTGATAGAAGTACCGAGGGGGCTGCTTCGCAGCCCTATCACGACACAAGGCCGCTCCTGCAGAGAATTTCTTGATCTCTACAGGAGCGGCCTTGTGTCGTGATAGGGCCGCAAAGC‑GCGCCC‑‑TCGGTTTTCAGCTGGCAGAAATTACTTCTGCTTCACACCTTCGACACTGATATCCAGGTCCAGGGTCTGCGAAGTAGCACCCGGGCCTTTGATGCCGAAGTCGTTCAGGTTCAGCGTGGTGGTGGCGTTGAAGCCAG > NC_002947_CJ‑RC/5677418‑5677708
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| Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 0 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
