Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A2 F56 I1 R1
|
57 |
68.1 |
2900404 |
98.5% |
2856897 |
146.6 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| RA |
NC_002947_CJ‑RC |
5,127,713 |
G→T |
G268V (GGC→GTC) |
PP_4512 → |
DMT superfamily permease |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NC_002947_CJ‑RC | 5,127,713 | 0 | G | T | 100.0%
| 159.4
/ NA
| 47 | G268V (GGC→GTC) | PP_4512 | DMT superfamily permease |
| Reads supporting (aligned to +/- strand): ref base G (0/0); new base T (19/28); total (19/28) |
GCGCACAGCCTGTTCGTCGCCAGCCTGGCGGTGATCAAGGCGCGCACCGCCGCGGTCGTGTTCGGCATGGAGCCGGTCTACGGTATTGCCGTGGCCTGGGCAGTGTTCGCCGAAACCCCGACCGTGCGCATGCTGCTGGGCGGCGCGCTGATCATCTTCGCTATCGTGCTGTCCAGCCGTCTGGCTGCCGAGCAACCGCCCAGGCAGCGACCACTGACCGAGGGCGCCTGATCAGCGGTCGTTGTGACCAAGATCACGCTGCGGGTCGACCTGGTCGCGCAC > NC_002947_CJ‑RC/5127571‑5127852
|
gcgcACAGCCTGTTCGTCGCCAGCCTGGCGGTGATCAAGGCGCGCACCGCCGCGGTCGTGTTCGGCATGGAGCCGGTCTACGGTATTGCCGTGGCCTGGGCAGTGTTAGCCGAAACCCCGCCCGTGCGCATGCTGCTGGGCGTCGCGCt > 1:43215/1‑149 (MQ=255)
cgcACAGCCTGTTCGTCGCCAGCCTGGCGGTGATCAAGGCGCGCACCGCCGCGGTCGTGTTCGGCATGGAGCCGGTCTACGGTATTGCCGTGGCCTGGGCAGTGTTCGCCGAAACCCCGACCGTGCGCATGCTGCTGGGCGTCGCGCTg < 1:241816/149‑1 (MQ=255)
cgcACAGCCTGTTCGTCGCCAGCCTGGCGGTGATCAAGGCGCGCACCGCCGCGGTCGTGTTCGGCATGGAGCCGGTCTACGGTATTGCCGTGGCCTGGGCAGTGTTCGCCGAAACCCCGACCGTGCGCATGCTGCTGGGCGTCGCGCTg < 1:55505/149‑1 (MQ=255)
gcACAGCCTGTTCGTCGCCAGCCTGGCGGTGATCAAGGCGCGCACCGCCGCGGTCGTGTTCGGCATGGAGCCGGTCTACGGTATTGCCGTGGCCTGGGCAGTGTTCGCCGAAACCCCGACCGTGCGCATGCTGCTGGGCGTCGCGCTGa < 2:185469/149‑1 (MQ=255)
acaGCCTGTTCGTCGCCAGCCTGGCGGTGATCAAGGCGCGCACCGCCGCGGTCGTGTTCGGCATGGAGCCGGTCTACGGTATTGCCGTGGCCTGGGCAGTGTTCGCCGAAACCCCGACCGTGCGCATGCTGCTGGGCGTCGCGCTGatc < 4:315245/149‑1 (MQ=255)
caGCCTGTTCGTCGCCAGCCTGGCGGTGATCAAGGCGCGCACCGCCGCGGTCGTGTTCGGCATGGAGCCGGTCTACGGTATTGCCGTGGCCTGGGCAGTGTTCGCCGAAACCCCGACCGTGCGCATGCTGCTGGGCGTCGCGCTGatc < 8:124282/148‑1 (MQ=255)
ttCGTCGCCAGCCTGGCGGTGATCAAGGCGCGCACCGCCGCGGTCGTGTTCGGCATGGAGCCGGTCTACGGTATTGCCGTGGCCTGGGCAGTGTTCGCCGAAACCCCGACCGTGCGCATGCTGCTGGGCGTCGCGCTGATCATCTTCg < 1:167166/148‑1 (MQ=255)
ttCGTCGCCAGCCTGGCGGTGATCAAGGCGCGCACCGCCGCGGTCGTGTTCGGCATGGAGCCGGTCTACGGTATTGCCGTGGCCTGGGCAGTGTTCGCCGAAACCCCGACCGTGCGCATGCTGCTGGGCGTCGCGCTGATCATCTTCGc > 3:284767/1‑149 (MQ=255)
tcgtcgCCAGCCTGGCGGTGATCAAGGCGCGCACCGCCGCGGTCGTGTTCGGCATGGAGCCGGTCTACGGTATTGCCGTGGCCTGGGCAGTGTTCGCCGAAACCCCGACCGTGCGCATGCTGCTGGGCGTCGCGCTGATCATCTTc < 7:116990/146‑1 (MQ=255)
gtcgCCAGCCTGGCGGTGATCAAGGCGCGCACCGCCGCGGTCGTGTTCGGCATGGAGCCGGTCTACGGTATTGCCGTGGCCTGGGCAGTGTTCGCCGAAACCCCGACCGTGCGCATGCTGCTGGGCGTCGCGCTGATCATCTTCGCTa < 5:60506/148‑1 (MQ=255)
tcgCCAGCCTGGCGGTGATCAAGGCGCGCACCGCCGCGGTCGTGTTCGGCATGGAGCCGGTCTACGGTATTGCCGTGGCCTGGGCAGTGTTCGCCGAAACCCCGACCGTGCGCATGCTGCTGGGCGTCGCGCTGATCATCTTCGCTATc < 1:175986/149‑1 (MQ=255)
gCCTGGCGGTGATCAAGGCGCGCACCGCCGCGGTCGTGTTCGGCATGGAGCCGGTCTACGGTATTGCCGTGGCCTGGGCAGTGTTCGCCGAAACCCCGACCGTGCGCATGCTGCTGGGCGTCGCGCTGATCATCTTCGCTATCGTGCt < 8:21276/148‑1 (MQ=255)
ccTGGCGGTGATCAAGGCGCGCACCGCCGCGGTCGTGGTCGGCATGGAGCCGGGCTACGGTATTGGCGTGGCCTGGGGAGTGTTGGCCGAAACCCCGACCGTGCGCATGCTGCTGGGCGTCGCGCGGATCATCTTCGCTATCGTGCTg > 1:206198/1‑148 (MQ=255)
ggTGATCAAGGCGCGCACCGCCGCGGTCGTGTTCGGCATGGAGCCGGTCTACGGTATTGCCGTGGCCTGGGCAGTGTTCGCCGAAACCCCGACCGTGCGCATGCTGCTGGGCGTCGCGCTGATCATCTTCGCTATCGTGCTGTCCAGcc > 6:85883/1‑149 (MQ=255)
ggTGATCAAGGCGCGCACCGCCGCGGTCGTGTTCGGCATGGAGCCGGTCTAAGGTTTTTCCGTGGCCTGGGCAGTGTTCGCCGAAACCCCGCCCGTGCGCATGCTGCTGGGCGTCGCGCTGATCATCTTCGCTATCGTGCTGTCCAGcc > 6:42983/1‑149 (MQ=255)
aTCAAGGCGCGCACCGCCGCGGTCGTGTTCGGCATGGAGCCGGTCTACGGTATTGCCGTGGCCTGGGCAGTGTTCGCCGAAACCCCGACCGTGCGCATGCTGCTGGGCGTCGCGCTGATCATCTTCGCTATCGTGCTGTCCAGCCGTCt < 5:74275/149‑1 (MQ=255)
tCAAGGCGCGCACCGCCGCGGTCGTGTTCGGCATGGAGCCGGTCTACGGTATTGCCGTGGCCTGGGCAGTGTTCGCCGAAACCCCGACCGTGCGCATGCTGCTGGGCGTCGCGCTGATCATCTTCGCTATCGTGCTGTCCAGCCGTCt > 8:8725/1‑148 (MQ=255)
gcgcgcACCGCCGCGGTCGTGTTCGGCATGGAGCCGGTCTACGGTATTGCCGTGGCCTGGGCAGTGTTCGCCGAAACCCCGACCGTGCGCATGCTGCTGGGCGTCGCGCTGATCATCTTCGCTATCGTGCTGTCCAGCCGTCTGGCTGc < 3:273998/149‑1 (MQ=255)
gcgcACCGCCGCGGTCGTGTTCGGCATGGAGCCGGTCTACGGTATTGCCGTGGCCTGGGCAGTGTTCGCCGAAACCCCGACCGTGCGCATGCTGCTGGGCGTCGCGCTGATCATCTTCGCTATCGTGCTGTCCAGCCGTCTGGCTGcc < 7:181456/148‑1 (MQ=255)
cgcACCGCCGCGGTCGTGTTCGGCATGGAGCCGGTCTACGGTATTGCCGTGGCCTGGGCAGTGTTCGCCGAAACCCCGACCGTGCGCATGCTGCTGGGCGTCGCGCTGATCATCTTCGCTATCGTGCTGTCCAGCCGTCTGGCTGCCGa < 1:53196/149‑1 (MQ=255)
ccgccgCGGTCGTGTTCGGCATGGAGCCGGTCTACGGTATTGCCGTGGCCTGGGCAGTGTTCGCCGAAACCCCGACCGTGCGCATGCTGCTGGGCGTCGCGCTGATCATCTTCGCTATCGTGCTGTCCAGCCGTCTGGCTGCCGAGCaa < 1:62241/149‑1 (MQ=255)
cgccgcGGTCGTGTTCGGCATGGAGCCGGTCTACGGTATTTCCGTGGCCTGGGCAGTGTTCGCCGAAACCCCGACCGTGCGCATGCTGCTGGGCGTCGCGCTGATCATCTTCGCTATCGTGCTGTCCAGCCGTCTGGCTGCCGAGCAAc > 4:133209/1‑149 (MQ=255)
gcgGTCGTGTTCGGCATGGAGCCGGTCTACGGTATTGCCGTGGCCTGGGCAGTGTTCGCCGAAACCCCGACCGTGCGCATGCTGCTGGGCGTCGCGCTGATCATCTTCGCTATCGTGCTGTCCAGCCGTCTGGCTGCCGAGCAACCGcc < 3:1557/149‑1 (MQ=255)
tCGTGTTCGGCATGGAGCCGGTCTACGGTATTGCCGTGGCCTGGGCAGTGTTCGCCGAAACCCCGACCGTGCGCATGCTGCTGGGCGTCGCGCTGATCATCTTCGCTATCGTGCTGTCCAGCCGTCTGGCTGCCGAGCAACCGCCCAg < 7:140036/148‑1 (MQ=255)
gCATGGAGCCGGTCTACGGTATTGCCGTGGCCTGGGCAGTGGTCGCCGAAACCCCGACCGTGCGCATGCTGCTGGGCGTCGCGCTGATCATCTTCGCTATCGTGCTGTCCAGCCGTCTGGCTGCCGAGCAACCGCCCAGGCAGCGAc < 7:24763/147‑1 (MQ=255)
aTGGAGCCGGTCTACGGTATTGCCGTGGCCTGGGCAGTGTTCGCCGAAACCCCGACCGTGCGCATGCTGCTGGGCGTCGCGCTGATCATCTTCGCTATCGTGCTGTCCAGCCGTCTGGCTGCCGAGCAACCGCCCAGGCAGCGACCAc < 7:8725/148‑1 (MQ=255)
gAGCCGGTCTACGGTATTGCCGTGGCCTGGGCAGTGTTCGCCGAAACCCCGACCGTGCGCATGCTGCTGGGCGTCGCGCTGATCATCTTCGCTATCGTGCTGTCCAGCCGTCTGGCTGCCGAGCAACCGCCCAGGCAGCGACCACTGAc < 5:85883/149‑1 (MQ=255)
gTCTACGGTATTGCCGTGGCCTGGGCAGTGTTCGCCGAAACCCCGACCGTGCGCATGCTGCTGGGCGTCGCGCTGATCATCTTCGCTATCGTGCTGTCCAGCCGTCTGGCTGCCGAGCAACCGCCCAGGCAGCGACCACTGACCGAggg > 2:252683/1‑149 (MQ=255)
tACGGTATTGCCGTGGCCTGGGCAGTGTTCGCCGAAACCCCGACCGTGCGCATGCTGCTGGGCGTCGCGCTGATCATCTTCGCTATCGTGCTGTCCAGCCGTCTGGCTGCCGAGCAACCGCCCAGGCAGCGACCACTGACCGAGGgcg > 7:200921/1‑148 (MQ=255)
cGGTATTGCCGTGGCCTGGGCAGTGTTCGCCGAAACCCCGACCGTGCGCATGCTGCTGGGCGTCGCGCTGATCATCTTCGCTATCGTGCTGTCCAGCCGTCTGGCTGCCGAGCAACCGCCCAGGCAGCGACCACTGACCGAGGGCGcc > 7:299215/1‑148 (MQ=255)
tGGCCTGGGCAGTGTTCGCCGAAACCCCGACCGTGCGCATGCTGCTTGGCGTCGCGCTGATCATCTTCGCTATCGTGCTGTCCAGCCGTCTGGCTGCCGAGCAACCGCCCAGGCAGCGACCACTGACCGAGGGCGCCTGATCAGCGGt < 8:26647/148‑1 (MQ=255)
gCCTGGGCAGTGTTCGCCGAAACCCCGACCGTGCGCATGCTGCTGGGCGTCGCGCTGATCATCTTCGCTATCGTGCTGTCCAGCCGTCTGGCTGCCGAGCAACCGCCCAGGCAGCGACCACTGACCGAGGGCGCCTGATCAGCGGTCg < 2:103251/148‑1 (MQ=255)
ccTGGGCAGTGTTCGCCGAAACCCCGACCGTGCGCATGCTGCTGGGCGTCGCGCTGATCATCTTCGCTATCGTGCTGTCCAGCCGTCTGGCTGCCGAGCAACCGCCCAGGCAGCGACCACTGACCGAGGGCGCCTGATCAGCGGTCGt > 7:166214/1‑148 (MQ=255)
gggCAGTGTTCGCCGAAACCCCGACCGTGCGCATGCTGCTGGGCGTCGCGCTGATCATCTTCGCTATCGTGCTGTCCAGCCGTCTGGCTGCCGAGCAACCGCCCAGGCAGCGACCACTGACCGAGGGCGCCTGATCAGCGGTCGTtgt > 5:327639/1‑148 (MQ=255)
ggCAGTGTTCGCCGAAACCCCGACCGTGCGCATGCTGCTGGGCGTCGCGCTGATCATCTTCGCTATCGTGCTGTCCAGCCGTCTGGCTGCCGAGCAACCGCCCAGGCAGCGACCACTGACCGAGGGCGCCTGATCAGCGGTCGTtgt < 4:284767/147‑1 (MQ=255)
tgtTCGCCGAAACCCCGACCGTGCGCATGCTGCTGGGCGTCGCGCTGATCATCTTCGCTATCGTGCTGTCCAGCCGTCTGGCTGCCGAGCAACCGCCCAGGCAGCGACCACTGACCGAGGGCGCCTGATCAGCGGTCGTTGTGAcc > 6:263379/1‑146 (MQ=255)
tgtTCGCCGAAACCCCGACCGTGCGCATGCTGCTGGGCGTCGCGCTGATCATCTTCGCTATCGTGCTGTCCAGCCGTCTGGCTGCCGAGCAACCGCCCAGGCAGCGACCACTGACCGAGGGCGCCTGATCAGCGGTCGTTGTGAc > 8:85327/1‑145 (MQ=255)
ttCGCCGAAACCCCGACCGTGCGCATGCTGCTGGGCGTCGCGCTGATCATCTTCGCTATCGTGCTGTCCAGCCGTCTGGCTGCCGAGCAACCGCCCAGGCAGCGACCACTGACCGAGGGCGCCTGATCAGCGGTCGTTGTGACCAAGAt < 2:206198/149‑1 (MQ=255)
gCCGAAACCCCGACCGTGCGCATGCTGCTGGGCGTCGCGCTGATCATCTTCGCTATCGTGCTGTCCAGCCGTCTGGCTGCCGAGCAACCGCCCAGGCAGCGACCACTGACCGAGGGCGCCTGATCAGCGGTCGTTGTGACCAAGATCAc > 6:169255/1‑149 (MQ=255)
cccGACCGTGCGCATGCTGCTGGGCGTCGCGCTGATCATCTTCGCTATCGTGCTGTCCAGCCGTCTGGCTGCCGAGCAACCGCCCAGGCAGCGACCACAGACCGAGGGCGCCTGATCAGCGGTCGTTGTGACCAAGATCACGCTGCggg > 2:356213/1‑149 (MQ=255)
ccGACCGTGCGCATGCTGCTGGGCGTCGCGCTGATCATCTTCGCTATCGTGCTGTCCAGCCGTCTGGCTGCCGAGCAACCGCCCAGGCAGCGACCACTGACCGAGGGCGCCTGATCAGCGGTCGTTGTGACCAAGATCACGCTGCGGGt > 3:176259/1‑149 (MQ=255)
aTGCTGCTGGGCGTCGCGCTGATCATCTTCGCTATCGTGCTGTCCAGCCGTCTGGCTGCCGAGCAACCGCCCAGGCAGCGACCACTGACCGAGGGCGCCTGATCAGCGGTCGTTGTGACCAAGATCACGCTGCGGGTCGACCTGGTcgc < 3:133209/149‑1 (MQ=255)
tgctgcTGGGCGTCGCGCTGATCATCTTCGCTATCGTGCTGTCCAGCCGTCTGGCTGCCGAGCAACCGCCCAGGCAGCGACCACTGACCGAGGGCGCCTGATCAGCGGTCGTTGTGACCAAGATCACGCTGCGGGTCGACCTGGTcgcg < 1:252683/149‑1 (MQ=255)
ctgctgGGCGTCGCGCTGATCATCTTCGCTATCGTGCTGTCCAGCCGTCTGGCTGCCGAGCAACCGCCCAGGCAGCGACCACTGACCGAGGGCGCCTGATCAGCGGTCGTTGTGACCAAGATCACGCTGCGGGTCGACCTGGTCGCGCa < 4:54422/149‑1 (MQ=255)
tgctgGGCGTCGCGCTGATCATCTTCGCTATCGTGCTGTCCAGCCGTCTGGCTGCCGAGCAACCGCCCAGGCAGCGACCACTGACCGAGGGCGCCTGATCAGCGGTCGTTGTGACCAAGATCACGCTGCGGGTCGACCTGGTCGCGCAc > 5:319419/1‑149 (MQ=255)
tgGGCGTCGCGCTGATCATCTTCGCTATCGTGCTGTCCAGCCGTCTGGCTGCCGAGCAACCGCCCAGGCAGCGACCACTGACCGAGGGCGCCTGATCAGCGGTCGTTGTGACCAAGATCACGCTGCGGGTCGa > 8:245302/1‑133 (MQ=255)
gggCGTCGCGCTGATCATCTTCGCTATCGTGCTGTCCAGCCGTCTGGCTGCCGAGCAACCGCCCAGGCAGCGACCACTGACCGAGGGCGCCTGATCAGCGGTCGTTGTGACCAAGATCACGCTGCGGGTCGAc < 7:245302/133‑1 (MQ=255)
|
GCGCACAGCCTGTTCGTCGCCAGCCTGGCGGTGATCAAGGCGCGCACCGCCGCGGTCGTGTTCGGCATGGAGCCGGTCTACGGTATTGCCGTGGCCTGGGCAGTGTTCGCCGAAACCCCGACCGTGCGCATGCTGCTGGGCGGCGCGCTGATCATCTTCGCTATCGTGCTGTCCAGCCGTCTGGCTGCCGAGCAACCGCCCAGGCAGCGACCACTGACCGAGGGCGCCTGATCAGCGGTCGTTGTGACCAAGATCACGCTGCGGGTCGACCTGGTCGCGCAC > NC_002947_CJ‑RC/5127571‑5127852
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
BRESEQ :: bam2aln output
GGCGCACAGCCTGTTCGTCGCCAGCCTGGCGGTGATCAAGGCGCGCACCGCCGCGGTCGTGTTCGGCATGGAGCCGGTCTACGGTATTGCCGTGGCCTGGGCAGTGTTCGCCGAAACCCCGACCGTGCGCATGCTGCTGGGCGGCGCGCTGATCATCTTCGCTATCGTGCTGTCCAGCCGTCTGGCTGCCGAGCAACCGCCCAGGCAGCGACCACTGACCGAGGGCGCCTGATCAGCGGTCGTTGTGACCAAGATCACGCTGCGGGTCGACCTGGTCGCGCACC > NC_002947_CJ‑RC/5127570‑5127853
|
GGCGCACAGCCTGTTCGTCGCCAGCCTGGCGGTGATCAAGGCGCGCACCGCCGCGGTCGTGTTCGGCATGGAGCCGGTCTACGGTATTGCCGTGGCCTGGGCAGTGTTAGCCGAAACCCCGCCCGTGCGCATGCTGCTGGGCGTCGCGCTG > NB501016:282:H2V7GAFX2:1:11108:1581:18328/1‑151 (MQ=60)
GCGCACAGCCTGTTCGTCGCCAGCCTGGCGGTGATCAAGGCGCGCACCGCCGCGGTCGTGTTCGGCATGGAGCCGGTCTACGGTATTGCCGTGGCCTGGGCAGTGTTCGCCGAAACCCCGACCGTGCGCATGCTGCTGGGCGTCGCGCTGA < NB501016:282:H2V7GAFX2:1:21112:6822:1240/151‑1 (MQ=60)
GCGCACAGCCTGTTCGTCGCCAGCCTGGCGGTGATCAAGGCGCGCACCGCCGCGGTCGTGTTCGGCATGGAGCCGGTCTACGGTATTGCCGTGGCCTGGGCAGTGTTCGCCGAAACCCCGACCGTGCGCATGCTGCTGGGCGTCGCGCTGA < NB501016:282:H2V7GAFX2:1:11111:4487:5132/151‑1 (MQ=60)
GTTCGTCGCCAGCCTGGCGGTGATCAAGGCGCGCACCGCCGCGGTCGTGTTCGGCATGGAGCCGGTCTACGGTATTGCCGTGGCCTGGGCAGTGTTCGCCGAAACCCCGCCCGTGCGCATGCTGCTGGGCGTCGCGCTGATCATCTTCGCT > NB501016:282:H2V7GAFX2:2:21210:16832:16173/1‑151 (MQ=60)
GTTCGTCGCCAGCCTGGCGGTGATCAAGGCGCGCACCGCCGCGGTCGTGTTCGGCATGGAGCCGGTCTACGGTATTGCCGTGGCCTGGGCAGTGTTCGCCGAAACCCCGACCGTGCGCATGCTGCTGGGCGTCGCGCTGATCATCTTCGC < NB501016:282:H2V7GAFX2:1:11309:6679:3668/150‑1 (MQ=60)
GTTCGTCGCCAGCCTGGCGGTGATCAAGGCGCGCACCGCCGCGGTCGTGTTCGGCATGGAGCCGGTCTACGGTATTGCCGTGGCCTGGGCAGTGTTCGCCGAAACCCCGACCGTGCGCATGCTGCTGGGCGTCGCGCTGATCATCTTCG < NB501016:282:H2V7GAFX2:4:11511:20913:1292/149‑1 (MQ=60)
CGTCGCCAGCCTGGCGGTGATCAAGGCGCGCACCGCCGCGGTCGTGTTCGGCATGGAGCCGGTCTACGGTATTGCCGTGGCCTGGGCAGTGTTCGCCGAAACCCCGACCGTGCGCATGCTGCTGGGCGTCGCGCTGATCATCTTCGCTAT < NB501016:282:H2V7GAFX2:3:11501:4266:7853/150‑1 (MQ=60)
GTCGCCAGCCTGGCGGTGATCAAGGCGCGCACCGCCGCGGTCGTGTTCGGCATGGAGCCGGTCTACGGTATTGCCGTGGCCTGGGCAGTGTTCGCCGAAACCCCGACCGTGCGCATGCTGCTGGGCGTCGCGCTGATCATCTTCGCTATCG < NB501016:282:H2V7GAFX2:1:11310:17451:19371/151‑1 (MQ=60)
GCCTGGCGGTGATCAAGGCGCGCACCGCCGCGGTCGTGGTCGGCATGGAGCCGGGCTACGGTATTGGCGTGGCCTGGGGAGTGTTGGCCGAAACCCCGACCGTGCGCATGCTGCTGGGCGTCGCGCGGATCATCTTCGCTATAGTGCTGT > NB501016:282:H2V7GAFX2:1:21104:14457:17410/1‑150 (MQ=60)
CGGTGATCAAGGCGCGCACCGCCGCGGTCGTGGTCGGGCTGGAGCCGGGCGACGGTATTGGCGTGGGCGGGGGAGTGTTAGCCGGAACCCCGCCCGTGCGCATGCAGGGGGGCGGCGCGCTGATCATCTTCGCTGTCGTGCTGTgccggcg > NB501016:282:H2V7GAFX2:1:11308:22715:11568/1‑144 (MQ=60)
GATCAAGGCGCGCACCGCCGCGGTCGTGTTCGGGCTGGTGCCGGGCTACGGGTTTTCCGTGGGCGGGGGAGTGTTGGCCGCAACCCCGCCCGTGCGCATGCTGCTGGGGGTCGCGCGGAGGATCTTGGCGATCGTGCTGTCCAGCCGTCTG > NB501016:282:H2V7GAFX2:2:11208:16556:4075/1‑151 (MQ=39)
GATCAAGGCGCGCACCGCCGCGGTCGTGTTCGGCATGGAGCCGGTCTACGGTATTGCCGTGGCCTGGGCAGTGTTCGCCGAAACCCCGACCGTGCGCATGCTGCTGGGCGTCGCGCTGATCATCTTCGCTATCGTGCTGTCCAGCCGTCTG < NB501016:282:H2V7GAFX2:3:11503:8045:19737/151‑1 (MQ=60)
ATCAAGGCGCGCACCGCCGCGGTCGTGTTCGGCATGGAGCCGGTGTACGGTATTTCCGTGGCCGGGGGAGTGTTCGCCGAAACACCGCCCCGGCGCAAGCTGCTGGGCGTCGCGCGGATCATCTTCGCGATCGTGCAGTCCAGCCGTCTGG > NB501016:282:H2V7GAFX2:2:21206:25865:15564/1‑151 (MQ=60)
GGCGCGCACCGCCGCGGTCGTGTTCGGCATGGTGCCGGTCTACGGTATTGCCGTGGCCTGGGCAGTGTTCGCCGAAACCCCGACCGTGCGCATGCTGCTGGGCGTCGCGCAGCTCATCTTCGCTATCGTGCAGTCCAGCCGTCTGGCTGCC > NB501016:282:H2V7GAFX2:4:11507:18491:8582/1‑151 (MQ=60)
GGCGCGCACCGCCGCGGTCGTGTTCGGCATGGAGCCGGTCTACGGTATTGCCGTGGCCTGGGCAGTGTTCGCCGAAACCCCGACCGTGCGCATGCTGCTGGGCGTCGCGCTGATCATCTTCGCTATCGTGCTGTCCAGCCGTCTGGCTGCC < NB501016:282:H2V7GAFX2:2:21208:15997:13933/151‑1 (MQ=60)
GCGCGCACCGCCGCGGTCGTGTTCGGCATGGAGCCGGTCTACGGTATTGCCGTGGCCTGGGCAGTGTTCGCCGAAACCCCGACCGTGCGCATGCTGCTGGGCGTCGCGCTGATCATCTTCGCTATCGTGCTGTCCAGCCGTCTGGCTGCCG < NB501016:282:H2V7GAFX2:4:11611:2830:16011/151‑1 (MQ=60)
GCGCACCGCCGCGGTCGTGTTCGGCATGGAGCCGGTCTACGGTATTGCCGTGGCCTGGGCAGTGTTCGCCGAAACCCCGACCGTGCGCATGCTGCTGGGCGTCGCGCTGATCATCTTCGCTATCGTGCTGTCCAGCCGTCTGGCTGCCGAG < NB501016:282:H2V7GAFX2:1:11110:21220:15913/151‑1 (MQ=60)
ACCGCCGCGGTCGTGTTCGGCATGGAGCCGGTCTACGGTATTGCCGTGGCCTGGGCAGTGTTCGCCGAAACCCCGACCGTGCGCATGCTGCTGGGCGTCGCGCTGATCATCTTCGCTATCGTGCTGTCCAGCCGTCTGGCTGCCGAGCAAC < NB501016:282:H2V7GAFX2:1:11112:1407:10187/151‑1 (MQ=60)
CGCGGTCGTGTTCGGCATGGAGCCGGTCTACGGTATTGCCGTGGCCTGGGCAGTGTTCGCCGAAACCCCGACCGTGCGCATGCTGCTGGGCGTCGCGCTGATCATCTTCGCTATCGTGCTGTCCAGCCGTCTGGCTGCCGAGCAACCGCCC < NB501016:282:H2V7GAFX2:2:11101:15799:7140/151‑1 (MQ=60)
GGTCGTGTTCGGCATGGAGCCGGTCTACGGTATTGCCGTGGCCTGGGCAGTGTTCGCCGAAACCCCGACCGTGCGCATGCTGCTGGGCGTCGCGCTGATCATCTTCGCTATCGTGCTGTCCAGCCGTCTGGCTGCCGAGCAACCGCCCAGG < NB501016:282:H2V7GAFX2:4:11603:16825:10599/151‑1 (MQ=60)
CGGCATGGAGCCGGTCTACGGTATTGCCGTGGCCTGGGCAGTGGTCGCCGAAACCCCGACCGTGCGCATGCTGCTGGGCGTCGCGCTGATCATCTTCGCTATCGTGCTGTCCAGCCGTCTGGCTGCCGAGCAACCGCCCAGGCAGCGACC < NB501016:282:H2V7GAFX2:4:11405:8059:13604/150‑1 (MQ=60)
GCATGGAGCCGGTCTACGGTATTGCCGTGGCCTGGGCAGTGTTCGCCGAAACCCCGACCGTGCGCATGCTGCTGGGCGTCGCGCTGATCATCTTCGCTATCGTGCTGTCCAGCCGTCTGGCTGCCGAGCAACCGCCCAGGCAGCGACCACT < NB501016:282:H2V7GAFX2:4:11402:18744:14117/151‑1 (MQ=60)
GGAGCCGGTCTACGGTATTGCCGTGGCCTGGGCAGTGTTCGCCGAAACCCCGACCGTGCGCATGCTGCTGGGCGTCGCGCTGATCATCTTCGCTATCGTGCTGTCCAGCCGTCTGGCTGCCGAGCAACCGCCCAGGCAGCGACCACTGACC < NB501016:282:H2V7GAFX2:3:11506:1991:4822/151‑1 (MQ=60)
CTACGGTATTGCCGTGGCCTGGGCAGTGTTCGCCGAAACCCCGACCGTGCGCATGCTGCTGGGCGTCGCGCTGATCATCTTCGCTATCGTGCTGTCCAGCCGTCTGGCTGCCGAGCAACCGCCCAGGCAGCGACCACTGACCGAGGGCGCC > NB501016:282:H2V7GAFX2:4:21403:16416:11542/1‑151 (MQ=60)
ACGGTATTGCCGTGGCCTGGGCAGTGTTCGCCGAAACCCCGACCGTGCGCATGCTGCTGGGCGTCGCGCTGATCATCTTCGCTATCGTGCTGTCCAGCCGTCTGGCTGCCGAGCAACCGCCCAGGCAGCGACCACTGACCGAGGGCGCCTG > NB501016:282:H2V7GAFX2:4:21510:8629:5275/1‑151 (MQ=60)
GCCTGGGCAGTGTTCGCCGAAACCCCGACCGTGCGCATGCTGCTGGGCGTCGCGCTGATCATCTTCGCTATCGTGCTGTCCAGCCGTCTGGCTGCCGAGCAACCGCCCAGGCAGCGACCACTGACCGAGGGCGCCTGATCAGCGGTCGTTG > NB501016:282:H2V7GAFX2:4:11608:11237:15196/1‑151 (MQ=60)
TGGGCAGTGTTCGCCGAAACCCCGACCGTGCGCATGCTGCTGGGCGTCGCGCTGATCATCTTCGCTATCGTGCTGTCCAGCCGTCTGGCTGCCGAGCAACCGCCCAGGCAGCGACCACTGACCGAGGGCGCCTGATCAGCGGTCGTTGTG > NB501016:282:H2V7GAFX2:3:21606:15706:1913/1‑150 (MQ=60)
CCCGACCGTGCGCATGCTGCTGGGCGTCGCGCTGATCATCTTCGCTATCGTGCTGTCCAGCCGTCTGGCTGCCGAGCAACCGCCCAGGCAGCGACCACTGACCGAGGGCGCCTGATCAGCGGTCGTTGTGACCAAGATCACGCTGCGGGTC > NB501016:282:H2V7GAFX2:2:11311:10531:1291/1‑151 (MQ=60)
CATGCTGCTGGGCGTCGCGCTGATCATCTTCGCTATCGTGCTGTCCAGCCGTCTGGCTGCCGAGCAACCGCCCAGGCAGCGACCACTGACCGAGGGCGCCTGATCAGCGGTCGTTGTGACCAAGATCACGCTGCGGGTCGACCTGGTCGCG < NB501016:282:H2V7GAFX2:2:11303:16908:3327/151‑1 (MQ=60)
ATGCTGCTGGGCGTCGCGCTGATCATCTTCGCTATCGTGCTGTCCAGCCGTCTGGCTGCCGAGCAACCGCCCAGGCAGCGACCACTGACCGAGGGCGCCTGATCAGCGGTCGTTGTGACCAAGATCACGCTGCGGGTCGACCTGGTCGCGC < NB501016:282:H2V7GAFX2:1:21202:2138:6282/151‑1 (MQ=60)
CTGCTGGGCGTCGCGCTGATCATCTTCGCTATCGTGCTGTCCAGCCGTCTGGCTGCCGAGCAACCGCCCAGGCAGCGACCACTGACCGAGGGCGCCTGATCAGCGGTCGTTGTGACCAAGATCACGCTGCGGGTCGACCTGGTCGCGCACC > NB501016:282:H2V7GAFX2:3:21604:24470:10678/1‑151 (MQ=60)
CTGGGCGTCGCGCTGATCATCTTCGCTATCGTGCTGTCCAGCCGTCTGGCTGCCGAGCAACCGCCCAGGCAGCGACCACTGACCGAGGGCGCCTGATCAGCGGTCGTTGTGACCAAGATCACGCTGCGGGTCGACC < NB501016:282:H2V7GAFX2:4:21411:4663:17602/136‑1 (MQ=60)
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GGCGCACAGCCTGTTCGTCGCCAGCCTGGCGGTGATCAAGGCGCGCACCGCCGCGGTCGTGTTCGGCATGGAGCCGGTCTACGGTATTGCCGTGGCCTGGGCAGTGTTCGCCGAAACCCCGACCGTGCGCATGCTGCTGGGCGGCGCGCTGATCATCTTCGCTATCGTGCTGTCCAGCCGTCTGGCTGCCGAGCAACCGCCCAGGCAGCGACCACTGACCGAGGGCGCCTGATCAGCGGTCGTTGTGACCAAGATCACGCTGCGGGTCGACCTGGTCGCGCACC > NC_002947_CJ‑RC/5127570‑5127853
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| Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 0 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
