Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A5 F24 I1 R1 57 68.7 2934938 98.3% 2885044 146.2

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation annotation gene description
MC JC NC_002947_CJ‑RC 4,889,360 Δ1,415 bp [gcl]–[hyi] [gcl], [hyi]

Missing coverage evidence...
   seq id start end size ←reads reads→ gene description
* * ÷ NC_002947_CJ‑RC 4889360 4890774 1415 78 [0] [0] 78 [gcl]–[hyi] [gcl],[hyi]

New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_002947_CJ‑RC = 48893590 (0.000)77 (1.140) 62/290 0.1 100% coding (715/1776 nt) gcl glyoxylate carboligase
?NC_002947_CJ‑RC 4890775 = 0 (0.000)coding (301/783 nt) hyi hydroxypyruvate isomerase

GATK/CNVnator alignment

N/A