Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A5 F24 I1 R1
|
57 |
68.7 |
2934938 |
98.3% |
2885044 |
146.2 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| RA |
NC_002947_CJ‑RC |
5,677,566 |
+G |
intergenic (+113/+27) |
rhlE‑II → / ← yceI |
ATP‑dependent RNA helicase/polyisoprene‑binding acidic stress response factor |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NC_002947_CJ‑RC | 5,677,565 | 1 | . | G | 98.6%
| 252.8
/ ‑3.2
| 71 | intergenic (+112/+28) | rhlE‑II/yceI | ATP‑dependent RNA helicase/polyisoprene‑binding acidic stress response factor |
| Reads supporting (aligned to +/- strand): ref base . (0/1); new base G (43/27); total (43/28) |
| Fisher's exact test for biased strand distribution p-value = 3.94e-01 |
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.80e-01 |
GTGAGCGCCCAGCGCTGCTGACCCGCAAGGGCTGATAGAAGTACCGAGGGGGCTGCTTCGCAGCCCTATCACGACACAAGGCCGCTCCTGCAGAGAATTTCTTGATCTCTACAGGAGCGGCCTTGTGTCGTGATAGGGCCGCAAAG‑C‑GCGCCCTCGGTTTTCAGCTGGCAGAAATTACTTCTGCTTCACACCTTCGACACTGATATCCAGGTCCAGGGTCTGCGAAGTAGCACCCGGGCCTTTGATGCCGAAGTCGTTCAGGTTCAGCGTGGTGGTGGCGTTGAAGCCA > NC_002947_CJ‑RC/5677419‑5677707
|
gggAGCGCCCTGCGCTGCTGACCCGCACGGGCTTATAGATGTACGGAGGGGGCTGCTTCGCAGCCCTATCACGACACAAGGCCGCTCCTGCAGAGAATTTCTTGATCTCTACAGGAGCGGCCTTGTGTCGTGATAGGGCCGCAAAg‑c‑gg < 2:266060/147‑2 (MQ=38)
gcCCAGCGCTGCTGACCCGCAAGGGCTGATAGAAGTACCGAGGGGGCTGCTTCGCAGCCCTATCACGACACAAGGCCGCTCCTGCAGAGAATTTCTTGATCTCTACAGGAGCGGCCTTGTGTCGTGATAGGGCCGCAAAg‑c‑ggccccct < 6:24474/149‑8 (MQ=255)
ccAGCGCTGCTGACCCGCAAGGGCTGATAGAAGTACCGAGGGGGCTGCTTCGCAGCCCTATCACGACACAAGGCCGCTCCTGCAGAGAATTTCTTGATCTCTACAGGAGCGGCCTTGTGTCGTGATAGGGCCGCAAAG‑CGGCCCCCTCg > 6:128986/1‑149 (MQ=255)
ccAGCGCTGCTGACCCGCAAGGGCTGATAGAAGTACCGAGGGGGCTGCTTCGCAGCCCTATCACGACACAAGGCCGCTCCTGCAGAGAATTTCTTGATCTCTACAGGAGCGGCCTTGTGTCGTGATAGGGCCGCAAAG‑CGGCCCCCTCg > 5:45485/1‑149 (MQ=255)
gcgcTGCTGACCCGCAAGGGCTGATAGAAGTACCGAGGGGGCTGCTTCGCAGCCCTATCACGACACAAGGCCGCTCCTGCAGAGAATTTCTTGATCTCTACAGGAGCGGCCTTGTGTCGTGATAGGGCCGCAAAG‑CGGCCCCCTCGGtt < 4:246289/149‑1 (MQ=255)
gctgctGACCGGCAAGGGCTGATAGAAGTACCGAGGGGGCTGCTTCGCAGCCCTATCACGACACAAGGCCGCTCCTGCAGAGAATTTCTTGATCTCTACAGGAGCGGCCTTGTGTCGTGATAGGGCCGCAAAG‑CGGCCCCCTCGGtttt < 6:92016/149‑1 (MQ=255)
gACCCGCAAGGGCTGATAGAAGTACCGAGGGGGCTGCTTCGCAGCCCTATCACGACACAAGGCCGCTCCTGCAGAGAATTTCTTGATCTCTACAGGAGCGGCCTTGTGTCGTGATAGGGCCGCAAAG‑CGGCCCCCTCGGTTTTCAGCTg > 4:46013/1‑149 (MQ=255)
aCCCGCAAGGGCTGATAGAAGTACCGAGGGGGCTGCTTCGCAGCCCTATCACGACACAAGGCCGCTCCTGCAGAGAATTTCTTGATCTCTACAGGAGCGGCCTTGTGTCGTGATAGGGCCGCAAAG‑CGGCCCCCTCGGTTTTCAGCTgg > 6:359755/1‑149 (MQ=255)
aCCCGCAAGGGCTGATAGAAGTACCGAGGGGGCTGCTTCGCAGCCCTATCACGACACAAGGCCGCTCCTGCAGAGAATTTCTTGATCTCTACAGGAGCGGCCTTGTGTCGTGATAGGGCCGCAAAG‑CGGCCCCCTCGGTTTTCAGCTgg > 2:152893/1‑149 (MQ=255)
aCCCGCAAGGGCTGATAGAAGTACCGAGGGGGCTGCTTCGCAGCCCTATCACGACACAAGGCCGCTCCTGCAGACAATTTCTTGATCTCAACAGGAGCGGCCTTGTGTCGTGATAGGGCCGCAAAG‑CGGCCCCCTCGGTTTTCAGCTgg < 5:2622/149‑1 (MQ=38)
aTAGAAGTACCGAGGGGGCTGCTTCGCTGCCCTATCACGACACAAGGCGGCTCCTGCAGAGAATTTCTTGATCTCTACAGGAGCGGCCTTGTGTCGTTATAGGGCCGCAAAG‑CGGCCCCCTCGGTTTTCAGCTGGCAGAAATTACTTc < 4:138686/148‑1 (MQ=37)
aTAGAAGTACCGAGGGGGCTGCTTCGCAGCCCTATCACGACACAAGGCCGCTCCTGCAGAGAATTTGTTGATGTCTACAGGAGCGGCCTTGTGTCATGATAGGGCCGCAAAG‑CGGCCCCCTCGGTTTTCAGCTGGCAGAAATTACTTCt > 3:69530/1‑149 (MQ=37)
aTAGAAGTACCGAGGGGGCTGCTTCGCAGCCCTATCACGACACAAGGCCGCTCCTGCAGAGAATTTCTTGATCTCTACAGGAGCGGCCTTGTGTCGTGATAGGGCCGCAAAG‑CGGCCCCCTCGGTTTTCAGCTGGCAGAAATTACTTCt > 1:37466/1‑149 (MQ=255)
aTAGAAGTACCGAGGGGGCTGCTTCGCAGCCCTATCACGACACAAGGCCGCTCCTGCAGAGAATTTCTTGATCTCTACAGGAGCGGCCTTGTGTCGTGATAGGGCCGCAAAG‑CGGCCCCCTCGGGTTTCAGCTGGCAGAAATTACTTCt > 7:66599/1‑149 (MQ=255)
tAGAAGTACCGAGGGGGCTGCTTCGCCGCCCTATCACGACACAAGGCCGCTCCTGCAGAGAATTTCTTGATCTCTACAGGAGCGGCCTTGTGTCGTGATAGGGCCGCAAAG‑CGGCCCCCTCGGTTTTCAGCTGGCAGAAATTACTTCTg > 8:7926/1‑149 (MQ=255)
aaGTACCGAGGGGGCTGCTTCGCAGCCCTATCACGACACAAGGCCGCTCCTGCAGAGAATTTCTTGATCTCTACAGGAGCGGCCTTGTGTCGTGATAGGGCCGCAAAG‑CGGCCCCCTCGGTTTTCAGCTGGCAGAAATTACTTCTGCt > 8:126061/1‑148 (MQ=255)
gTACCGAGGGGGCTGCTTCGCAGCCCTATCACGACACAAGGCCGCTCCTGCAGAGAATTTCTTGATCTCTACAGGAGCGGCCTTGTGTCGTGATAGGGCCGCAAAG‑CGGCCCCCTCGGTTTTCAGCTGGCAGAAATTAATTCTGCTTca > 5:285045/1‑149 (MQ=255)
aCCGAGGGGGCTGCTTCGCAGCCCTATAACGACACAAGCCCGCACCAGCAGAGAATTTCTTGATCACTACAGGAACGGCCTTCTGTCGAGATAGGGCCGCAAAG‑CGGCCCCCGAGGTATTAAGCTGGCAGAAAATACTACTGCTTcaca > 2:274809/1‑149 (MQ=255)
cGAGGGGGCTGCTTCGCAGCCCTATCACGACACAAGGCCGCTCCTGCAGAGAATTTCTTGATCTCGACAGGAGCGGCCTTGTGTCGTGATAGGGCCGCAAAG‑CGGCCCCCTCGGTTTTCAGCTGGCAGAAATGACTTCGGCTTCAcccc > 2:341523/1‑149 (MQ=37)
aGGGGGCGGCTTCGCAGCCCTATCACGACACAAGGCCGCTCCTGCAGAGAATTTCTTCATCTCTACAGGAGCGGCCTTGTGTCGTGATAGGGCCGCAAAG‑CGGCCCCCTCGGTTTTCAGCTGGCAGAAATTACTTCTGCTTCACACCtt < 5:133201/149‑1 (MQ=37)
ggggATGCTTCGCAGCCCTATCACGACACAAGGCCGCTCCTGCAGAGAATTTCTTGATCTCTACAGGAGCGGCCTTGTGTCGTGATAGGGCCGCAAAG‑CGGCCCCCTCGGTTTTCAGCTGGCAGAAATTACTTCTGCTTCACACCTTc < 2:359531/148‑1 (MQ=255)
gggCTGCTTCGCAGCCCTATCACGACACAAGGCCGCTCCTGCAGAGAATTTCTTGATCTCTACAGGAGCGGCCTTGTGTCGTGATAGGGCCGCAAAG‑CGGCCCCCTCGGTTTTCAGCTGGCAGAAATTACTTCTGCTTCACACCTTCGa < 8:375627/149‑1 (MQ=255)
gctgctTCGCAGCCCTATCACGACACAAGGCCGCTCCTGCAGAGAATTTCTTGATCTCTACAGGAGCGGCCTTGTGTCGTGATAGGGCCGCAAAG‑CGGCCCCCTCGGTTTTGAGCTGGCAGAAATTAGTTCTGCTTCCCACCTTCGaca > 7:81775/1‑149 (MQ=37)
gctgctTCGCAGCCCTATCACGACACAAGGCCGCTCCTGCAGAGAATTTCTTGATCTCTACAGGAGCGGCCTTGTGTCGTGATAGGGCCGCAAAG‑CGGCCCCCTCGGTTTTCAGCTGGCAGAAATTACTTCTGCTTCACACCTTCGaca > 4:232704/1‑149 (MQ=255)
tgctTCGCAGCCCTATCACGACACAAGGCCGCTCCTGCAGAGAATTTCTTGATCTCTACAGGAGCGGCCTTGTGTCGTGATAGGGCCGCAAAG‑CGGCCCCCTCGGTTTTCAGCTGGCAGAAATTACTTCTGCTTCACACCTTCGacacg > 7:335565/1‑148 (MQ=255)
ctTCGCAGCCCTATCACGACACAAGGCCGCTCCTGCAGAGAATTTCTTGATCTCTACAGGAGCGGCCTTGTGTCGTGATAGGGCCGCAAAG‑CGGCCCCCTCGGTTTTCAGCTGGCAGAAATTACTTCTGCTTCACACCTTCGACACTg < 6:353020/148‑1 (MQ=255)
ttCGCAGCCCTATCACGACACAAGGCCGCTCCTGCAGAGAATTTCTTGATCTCTACAGGAGCGGCCTTGTGTCGTGATAGGGCCGCAAAG‑CGGCCCCCTCGGTTTTCAGCTGGCAGAAATTACTTCTGCTTCACACCTTCGACACTGat < 6:232403/149‑1 (MQ=255)
ttCGCAGCCCTATCACGACACAAGGCCGCTCCTGCAGAGAATTTCTTGATCTCTACAGGAGCGGCCTTGTGTCGTGATAGGGCCGCAAAG‑CGGCCCCCTCGGTTTTCAGCTGGCAGAAATTACTTCTGCTTCACACCTTCGACACTGat > 1:303780/1‑149 (MQ=255)
ttCGCAGCCCTATCACGACACAAGGCCGCTCCTGCAGAGAATTTCTTGATCTCTACAGGAGCGGCCTTGTGTCGTGATAGGGCCGCAAAG‑CGGCCCCCGCGGTTTTCAGCTGGCAGAAATTACTTCTGCTTCTCACCTTAGACACTGa > 3:287980/1‑148 (MQ=37)
cAGCCCTATCACGACACAAGGCCGCTCCTGCAGAGAATTTCTTGATCTCTACAGGAGCGGCCTTGTGTCGTGATAGGGCCGCAAAG‑CGGCCCCCTCGGTTTTCAGCTGGCAGAAATTACTTCTGCTTCACACCTTCGACACTGATAtcc < 2:106045/149‑1 (MQ=255)
aGCCCTATCACGACACACGGCCGCTCCTGCAGAGAATTTCTTGAGCTCTACAGGAGCGGCCTTGTGTCGTGATAGGGCCGCAAAG‑CGGCCCCCTCGGTTTTCAGCTGGCAGAAATTACTTCTGCTTCACACCTTCGACACTGATAtcca < 6:325071/149‑1 (MQ=38)
cccTATCACGACACAAGGCCGCTCCTGCAGAGAATTTCTTGATCTCTACAGGAGCGGCCTTGTGTCGTGATAGGGCCGCAAAG‑CGGCCCCCTCGGTTTTCAGCTGGCAGAAATTTCTTCTGCTTCACACCTTCGACACTGATAtccagg > 7:293752/1‑149 (MQ=255)
tCACGACACAAGGCCGCTCCTGCAGAGAATTTCTTGATCTCTACAGGAGCGGCCTTGTGTCGTGATAGGGCCGCAAAG‑CGGCCCCCTCGGTTTTCAGCTGGCAGAAATTACTTCTGCTTCACACCTTCGACACTGATAtccaggtccag > 3:175626/1‑149 (MQ=255)
aCGACACAAGGCCGCTCCTGCAGAGAATTTCTTGATCTCTACAGGAGCGGCCTTGTGTCGTGATAGGGCCGCAAAG‑CGGCCCCCTCGGTTTTCAGCTGGCAGAAATTACTTCTGCTTCACACCTTCGACACTGATAtccaggtccagg < 8:109498/148‑1 (MQ=255)
cGACACAAGGCCGCTCCTGCAGAGAATTTCTTGATCTCTACAGGAGCGGCCTTGTGTCGTGATAGGGCCGCAAAG‑CGGCCCCCTCGGTTTTCAGCTGGCAGAAATTACTTCTGCTTCACACCTTCGACACTGATATCCAGGTCCAGGGt > 3:232613/1‑149 (MQ=255)
gCCGCTCCTGCAGAGAATTTCTTGATCTCTACAGGAGCGGCCTTGTGTCGTGATAGGGCCGCAAAG‑CGGCCCCCTCGGTTTTCAGCTGGCAGAAATTACTTCTGCTTCACACCTTCGACACTGATATCCAGGTCCAGGGTCTGCGAAg > 1:292859/1‑148 (MQ=255)
cGCTCCTGCAGAGAATTTCTTGATCTCTACAGGAGCGGCCTTGTGTCGTGATAGGGCCGCAAAG‑CGGCCCCCTCGGTTTTCAGCTGGCAGAAATTACTTCTGCTTCACACCTTCGACACTGATATCCAGGTCCAGGGTCTGCGAAGTAg > 6:297968/1‑149 (MQ=255)
cAGAGAATTTCTTGATCTCTACAGGAGCGGCCTTGTGTCGTGATAGGGCCGCAAAG‑CGGCCCCCTCGGTTTTCAGCTGGCAGAAATTACTTCTGCTTCACACCTTCGACACTGATATCCAGGTCCAGGGTCTGCGAAGTAGCACCCggg > 7:65869/1‑149 (MQ=255)
cAGAGAATTTCTTGATCTCTACAGGAGCGGCCTTGTGTCGTGATAGGGCCGCAAAG‑CGGCCCCCTCGGTTTTCAGCTGGCAGAAATTACTTCTGCTTCACACCTTCGACACTGATATCCAGGTCCAGGGTCTGCGAAGTAGCACCCgg < 8:168539/148‑1 (MQ=255)
aaTTTCTTGATCTCTACAGGAGCGGCCTTGTGTCGTGATAGGGCCGCAAAG‑CGGCCCCCTCGGTTTTCAGCTGGCAGAAATTACTTCTGCTTCACACCTTCGACACTGATATCCAGGTCCAGGGTCTGCGAAGTAGCACCCGGGCCttt > 4:283988/1‑149 (MQ=255)
aaTTTCTTGATCTCTACAGGAGCGGCCTTGTGTCGTGATAGGGCCGCAAAG‑CGGCCCCCTCGGTTTTCAGCTGGCAGAAATTACTTCTGCTTCACACATTCGACACTGATATCCAGGTCCAGGGTCTGCGAAGTAGCACCCGGGCCttt > 6:86748/1‑149 (MQ=255)
tttCTTGATCTCTACAGGAGCGGCCTTGTGTCGTGATAGGGCCGCAAAG‑CGGCCCCCTCGGTTTTCAGCTGGCAGAAATTACTTCTGCTTCACACCTTCGACACTGATATCCAGGTCCAGGGTCTGCGAAGTAGCACCCGGGCCTTTGa > 6:348393/1‑149 (MQ=255)
ttCTTGATCTCTACAGGAGCGGCCTTGTGTCGTGATAGGGCCGCAAAG‑CGGCCCCCTCGGTTTTCAGCTGGCAGAAATTACTTCTGCTTCACACCTTCGACACTGATATCCAGGTCCAGGGTCTGCGAAGTAGCACCCGGGCCTTTGAt > 4:19584/1‑149 (MQ=255)
tCTTGATCTCTACAGGAGCGGCCTTGTGTCGTGATAGGGCCGCAAAG‑CGGCCCCCTCGGTTTTCAGCTGGCAGAAATTAATTCTGCTTAACACCTTCGACACTGATATACAGGTCCAGGGTCTGCGAAGTAGCACCCGGGCCTTTGATg > 3:15478/1‑149 (MQ=38)
tCTTGATCTCTACAGGAGCGGCCTTGTGTCGTGATAGGGCCGCAAAG‑CGGCCCCCGCGGTTTTCAGCTGGCAGAAATTAATTCTGCTTCACACATTAGACACTGATATACAGGTCCAGGGTCTGCGAAGTAGCAACCGGGCCTTTGATg > 6:42138/1‑149 (MQ=38)
tctcTACTGGAGGGGCCTTGTGTGGTTATAGGGCCGCAATG‑CGGCCCCCTCGGTTTTCAGCTGGCAGAAATTACTTCTGCTTCACACCTTCGACACTGATATCCAGGTCCAGGGTCTGCGAAGTAGCACCCGGGCCTTTGATGCCGaa < 4:69777/148‑1 (MQ=255)
tctcTACAGGAGCGGCCTTGTGTCGTTATAGGGCCGCAAAG‑CGGCCCCCTCGGTTTTCAGCTGGCAGAAATTACTTCTGCTTCACACCTTCGACACTGATATCCAGGTCCAGGGTCTGCGAAGTAGCACCCGGGCCTTTGATGCCGaa < 1:152893/148‑1 (MQ=255)
cAGGAGGGGCTTTGTGTGGTGATAGGGCGGCAAAG‑CGGCCCCATCGGTTTTCAGCTGGCAGAAATTACTTCTGCTTCACACCTTCGACACTGATATCCAGGTCCAGGGTCTGCGAAGTAGCACCCGGGCCTTTGATGCCGAAGTCgttc < 5:232578/149‑1 (MQ=255)
cAGGAGCGGCCTTGTGTCGTGATAGGGCCGCAAAG‑CGGCCCCCTCGGTTTTCAGCTGGCAGAAATTACTTCTGCTTCACACCTTCGACACTGATATCCAGGTCCAGGGTCTGCGAAGTAGCACCCGGGCCTTTGATGCCGAAGTCgtt < 1:148280/148‑1 (MQ=255)
aGGAGCGGCCTTGTGTCGTGATAGGGCCGCAAAG‑CGGCCCCCTCGGTTTTCAGCTGGCAGAAATTACTTCTGCTTCACACCTTCGACACTGATATCCAGGTCCAGGGTCTGCGAAGTAGCACCCGGGCCTTTGATGCCGAAGTCgtt > 3:112109/1‑147 (MQ=255)
gCGGCCTTGTGTCGTGATAGGGCCGCAAAG‑CGGCCCCCTCGGTTTTCAGCTGGCAGAAATTACTTCTGCTTCACACCTTCGACACTGATATCCAGGTCCAGGGTCTGCGAAGTAGCACCCGGGCCTTTGATGCCGAAGTCgttcaggtt < 3:19584/149‑1 (MQ=255)
gCCTTGTGTCGTGATAGGGCCGCAAAGAG‑GCCCCCTCGGTTTTCAGCTGGCAGAATTTACTTCTGCTTCACACCTTCGACACTGATATCCAGGTCCAGGGTCTGGGAAGTAGCACCCGGGCCTTTGATGCCGAAGTCgttcaggttcag < 1:274809/149‑1 (MQ=255)
ccTTGTGTCGTGATAGGGCCGCAAAG‑CGGCCCCCTCGGTTTTCAGCTGGCAGAAATTACTTCTGCTTCACACCTTCGACACTGATATCCAGGTCCAGGGTCTGCGAAGTAGCACCCGGGCCTTTGATGCCGAAGTCGTTCAGGTTCAGc > 7:114861/1‑149 (MQ=255)
ccTTGTGTCATGATAGGGCCGCAAAG‑CGGCCCCCTCGGTTTTCAGCTGGCAGAAATTACTTCTGCTTCACACCTTCGACACTGATATCCAGGTCCAGGGTCTGCGAAGTAGCACCCGGGCCTTTGATGCCGAAGTCGTTCAGGTTCAGc < 4:69530/149‑1 (MQ=255)
ttGTGTCGTGATAGGGCCGCAAAG‑CGGCCCCCTCGGTTTTCAGCTGGCAGAAATTACTTCTGCTTCACACCTTCGACACTGATATCCAGGTCCAGGGTCTGCGAAGTAGCACCCGGGCCTTTGATGCCGAAGTCGTTCAGGTTCAGCgt > 2:103220/1‑149 (MQ=255)
gtCGTGATAGGGCCGCAAAG‑CGGCCCCCTCGGTTTTCAGCTGGCAGAAATTACTTCTGCTTCACACCTTCGACACTGATATCCAGGTCCAGGGTCTGCGAAGTAGCACCCGGGCCTTTGATGCCGAAGTCGTTCAGGTTCAGCgtggtg > 5:78981/1‑149 (MQ=255)
tCGTGATAGGGCCGCAAAG‑CGGCCCCCTCGGTTTTCAGCTGGCAGAAATTACTTCTGCTTCACACCTTCGACACTGATATCCAGGTCCAGGGTCTGCGAAGTAGCACCCGGGCCTTTGATGCCGAAGTCGTTCAGGTTCAGCgtggtg < 5:297968/148‑1 (MQ=255)
tCGTGATAGGGCCGCAAAG‑CGGCCCCCTCGGTTTTCAGCTGGCAGAAATTACTTCTGCTTCACACCTTCGACACTGATATCCAGGTCCAGGGTCTGCGAAGTAGCACCCGGGCCTTTGATGCCGAAGTCGTTCAGGTTCAGCgtgg > 7:367566/1‑146 (MQ=255)
tCGTGATAGGGCCGCAAAG‑CGGCCCCCTCGGTTTTCAGCTGGCAGAAATTACTTCTGCTTCACACCTTCGACACTGATATCCAGGTCCAGGGTCTGCGAAGTAGCACCCGGGCCTTTGATGCCGAAGTCGTTCAGGTTCAGCgtgg < 8:367566/146‑1 (MQ=255)
gTGATAGGGCCGCAACG‑CGGCCCCCTCGGTTTTCAGCTGGCAGAAATTACTTCTGCTTCACACCTTCGACACTGATATCCAGGTCCAGGGTCTGCGAAGTAGCACCCGGGCCTTTGATGCCGAAGTCGTTCAGGTTCAGCgtggtggtg < 2:173716/149‑1 (MQ=255)
gTGATAGGGCCGCAAAG‑CGGCCCCCTCGGTTTTCAGCTGGCAGAAATTACTTCTGCTTCACACCTTCGACACTGATATCCAGGTCCAGGGTCTGCGAAGTAGCACCCGGGCCTTTGATGCCGAAGTCGTTCAGGTTCAGCgtggtggtg < 6:78981/149‑1 (MQ=255)
gATAGGGCCGCAAAG‑CGGCCCCCTCGTTTTTCAGCTGGCAGAAATTACTTCTGCTTCACACCTTCGACACTGATATCCAGGTCAAGGGTCTGCGAAGTAGAACCCGGCCCTTTGATGAGGAAGACGTTCAGGATAAGCGAGGTGGTGGc > 5:45083/1‑149 (MQ=255)
gATAGGGCCGCAAAG‑CGGCCCCCTCGGTTTTCAGCTGGCAGAAATTACTTCTGCTTCACACCTTCGACACTGATATCCAGGTCCAGGGTCTGCGAAGTAGCACCCGGGCCTTTGATGCCGAAGTCGTTCAGGTTCAGCGTGGTGGTGGc > 2:74442/1‑149 (MQ=255)
aTAGGGCCGCAAAG‑CGGCCCCCTCGGTTTTCAGCTGGCAGAAATTACTTCTGCTTCACACCTTCGACACTGATATCCAGGTCCAGGGTCTGCGAAGTAGCACCCGGGCCTTTGATGCCGAAGTCGTTCAGGTTCAGCGTGGTGGTGGc < 8:335565/148‑1 (MQ=255)
aGGGCCGCAAAG‑CGGCCCCCTCGGTTTTCAGCTGTCAGAAATTACTTCTGCTTCACACCTTCGACACTGATATCAAGATCCAGGGTCTGCGAAGTAGCACCCGGGCCTTTGATGCCGAAGTCGTTCAGGTTCAGCGTGGTGGTGGCGtt > 7:160191/1‑149 (MQ=255)
ggCCGCAAAG‑CGGCCCCCTCGGTTTTCAGCTGGCAGAAATTACTTCTGCTTCACACCTTCGACACTGATATCCAGGTCCAGGGTCTGCGAAGTAGCACCCGGGCCTTTGATGCCGAAGTCGTTCAGGTTCAGCGTGGTGGTGGCGTTg > 5:215094/1‑148 (MQ=255)
ggCCGCAAAG‑CGGCCCCCTCGGTTTTCAGCTGGCAGAAATTACTTCTGCTTCACACCTTCGACACTGATATCCAGGTCCAGGGTCTGCGAAGTAGCACCCGGGCCTTTGATGCCGAAGTCGTTCAGGTTCAGCGTGGTGGTGGCGTTg > 3:38124/1‑148 (MQ=255)
gCCGCAAAG‑CGGCCCCCTCGGTTTTCAGCTGGCAGAAATTACTTCTGCTTCACACCTTCGACACTGATATCCAGGTCCAGGGTCTGCGAAGTAGCACCCGGGCCTTTGATGCCGAAGTCGTTCAGGTTCAGCGTGGTGGTGGCGTTg > 8:242559/1‑147 (MQ=255)
gCCGCAAAG‑CGGCCCCCTCGGTTTTCAGCTGGCAGAAATTACTTCTGCTTCACACCTTCGACACTGATATCCAGGTCCAGGGTCTGCGAAGTAGCACCCGGGCCTTTGATGCCGAAGTCGTTCAGGTTCAGCGTGGTGGTGGCGTTGaa < 8:65869/149‑1 (MQ=255)
gCCGCAAAG‑CGGCCCCCTCGGTTTTCAGCTGGCAGAAATTACTTCTGCTTCACACCTTCGACACTGATATCCAGGTCCAGGGTCTGCGAAGTAGCACCCGGGCCTTTGATGCCGAAGTCGTTCAGGTTCAGCGTGGTGGTGGCGTTGaa < 7:126061/149‑1 (MQ=255)
gCCGCAAAG‑CGGCCCCCTCGGTTTTAAGCTGGCAGAAATTACTTCTGCTTCACACCTTCGACACTGATATCCAGGTCCAGGGTCTGCGAAGTAGCACCCGGGCCTTTGATGCCGAAGTCgttcaggttcaac > 4:242580/1‑130 (MQ=255)
ccGCAAAG‑CGGCCCCCTCGGTTTTCAGCTGGCAGAAATTACTTCTGCTTCACACCTTCGACACTGATATCCAGGTCCAGGGTCTGCGAAGTAGCACCCGGGCCTTTGATGCCGAAGTCGTTCAGGTTCAGCGTGGTGGTGGCGTTGAAg > 7:68586/1‑149 (MQ=255)
cAAAG‑CGGCCCCCTCGGTTTTCAGCTGGCAGAAATTACTTCTGCTTCACACCTTCGACACTGATATCCAGGTCCAGGGTCTGCGAAGTAGCACCCGGGCCTTTGATGCCGAAGTCGTTCAGGTTCAGCGTGGTGGTGGCGTTGAAGCCa < 3:232704/149‑1 (MQ=255)
|
GTGAGCGCCCAGCGCTGCTGACCCGCAAGGGCTGATAGAAGTACCGAGGGGGCTGCTTCGCAGCCCTATCACGACACAAGGCCGCTCCTGCAGAGAATTTCTTGATCTCTACAGGAGCGGCCTTGTGTCGTGATAGGGCCGCAAAG‑C‑GCGCCCTCGGTTTTCAGCTGGCAGAAATTACTTCTGCTTCACACCTTCGACACTGATATCCAGGTCCAGGGTCTGCGAAGTAGCACCCGGGCCTTTGATGCCGAAGTCGTTCAGGTTCAGCGTGGTGGTGGCGTTGAAGCCA > NC_002947_CJ‑RC/5677419‑5677707
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
BRESEQ :: bam2aln output
CCCAGCGCTGCTGACCCGCAAGGGCTGATAGAAGTACCGAGGGGGCTGCTTCGCAGCCCTATCACGACACAAGGCCGCTCCTGCAGAGAATTTCTTGATCTCTACAGGAGCGGCCTTGTGTCGTGATAGGGCCGCAAAG‑C‑GCGCCC‑‑TCGGTTTTCAGCTGGCAGAAATTACTTCTGCTTCACACCTTCGACACTGATATCCAGGTCCAGGGTCTGCGAAGTAGCACCCGGGCCTTTGATGCCGAAGTCGTTCAGGTTCAGCGTGGTGGTGGCGTTGAAGCCAG > NC_002947_CJ‑RC/5677426‑5677708
|
CCCAGCGCTGCTGACCCGCAAGGGCTGATAGAAGTACCGAGGGGGCTGCTTCGCAGCCCTATCACGACACAAGGCCGCTCCTGCAGAGAATTTCTTGATCTCTACAGGAGCGGCCTTGTGTCGTGATAGGGCCGCAAAG‑CGGCCCCC‑‑TCGG > NB501016:282:H2V7GAFX2:3:11410:3980:5670/1‑151 (MQ=60)
GACCCGCAAGGGCTGATAGACGTACCGAGGGGGCTGCTTCGCAGCCCTATCACGACACAAGGCCGCTCCTGCAGACAATTTCTTGATCTCAACAGGAGCGGCCTTGTGTCGTGATAGGGCCGCAAAG‑CGGCCCCC‑‑TCGGTTTTCAGCTGGC < NB501016:282:H2V7GAFX2:3:11401:16817:11042/151‑1 (MQ=60)
GACCCCCACGGGCTCATAGAAGTACCGCGGGGGCGGCTTCGCAGCCCTATCACGACACAAGGCCGCTCCTGCAGAGAATTTCTTGATCTCTACAGGAGCGGCCTTGTGTCGTGATAGGGCCGCAAAG‑CGGCCCCC‑‑TCGGTTTTCAGCTG < NB501016:282:H2V7GAFX2:3:21405:21799:13962/149‑1 (MQ=60)
GATAGAAGTACCGAGGGGGCTGCTTCGCAGCCCTATCACGACACAAGGCCGCTCCTGCAGAGAATTTGTTGATGTCTACAGGAGCGGCCTTGTGTCGTGATAGGGCCGCAAAG‑CGGCCCCC‑‑GCGGGTTTCAGCTGGCAGCAATTAGTTCTG > NB501016:282:H2V7GAFX2:2:11201:1248:14853/1‑151 (MQ=60)
GATAGAAGTACCGAGGGGGCTGCTTCGCAGCCCTATCACGACACAAGGCCGCTCCTGCAGAGAATTTGTTGATGTCTACAGGAGCGGCCGTGTGTCATGATAGGGCCGCAAAG‑CGGCCCCC‑‑TCGGTTTTGAGCTGGCAGAAATTACTTATG > NB501016:282:H2V7GAFX2:2:11202:26701:14850/1‑151 (MQ=60)
GATAGAAGTACCGAGGGGGCTGCTTCGCAGCCCTATCACGACACAAGGCCGCTCCTGCAGAGAATTTCTTGATCTCTACAGGAGCGGCCTTGTGTCGTGATAGGGCCGCAAAG‑CGGCCCCC‑‑TCGGTTTTCAGCTGGCAGAAATTACTTCTG > NB501016:282:H2V7GAFX2:1:11107:14375:15671/1‑151 (MQ=60)
GATAGAAGTACCGAGGGGGCTGCTTCGCAGCCCTATCACGACACAAGGCCGCTCCTGCAGAGAATTTCTTGATCTCTACAGGAGCGGCCTTGTGTCGTGATAGGGCCGCAAAG‑CGGCCCCC‑‑TCGGGTTTCAGCTGGCAGAAATTACTTCTG > NB501016:282:H2V7GAFX2:4:11501:6538:9106/1‑151 (MQ=60)
AGTACCGAGGGGGCTGCTTCGCAGCCCTATCACGACACAAGGCCGCTCCTGCAGAGAATTTCTTGATCTCTACAGGAGCGGCCTTGTGTCGTGATAGGGCCGCAAAG‑CGGCCCCC‑‑TCGGTTTTCAGCTGGCAGAAATTAATTCTGCTTCAC > NB501016:282:H2V7GAFX2:3:21509:15057:5871/1‑151 (MQ=60)
ACCGAGGGGGCTGCTTCGCAGCCCTATCACGACACAAGGCCGCTCCTGCAGAGAATTTCTTGTTCTATACAGGAGCGGCCTTGTGTCGTGATAGGGGCGCAAAG‑C‑Ggccccccggggtttaaggtgtcagaaatttattgatgggaagagc > NB501016:282:H2V7GAFX2:3:21411:13196:6146/1‑106 (MQ=60)
GAGGGGGCGGCTTCGCAGCCCTATCACGACACAAGGCCGCTCCTGCAGAGAATTTCTTCATCTCTACAGGAGCGGCCTTGTGTCGTGATAGGGCCGCAAAG‑CGGCCCCC‑‑TCGGTTTTCAGCTGGCAGAAATTACTTCTGCTTCACACCTTC < NB501016:282:H2V7GAFX2:3:11603:7330:1584/151‑1 (MQ=60)
GGCTGCTTCGCAGCCCTATCACGACACAAGGCCGCTCCTGCAGAGAATTTCTTGATCTCTACAGGAGCGGCCTTGTGTCGTGATAGGGCCGCAAAG‑CGGCCCCC‑‑TCGGTTTTGAGCTGGCAGAAATTAGTTCTGCTTCCCACCTTCGACAC > NB501016:282:H2V7GAFX2:4:11504:9359:7299/1‑151 (MQ=60)
CTGCTTCGCAGCCCTATCACGACACAAGGCCGCTCCTGCAGAGAATTTCTTGATCTCTACAGGAGCGGCCTTGTGTCGTGATAGGGCCGCAAAG‑CGGCCCCC‑‑TCGGTTTTCAGCTGGCAGAAATTACTTCTGCTTCACACCTTCGCCACGG > NB501016:282:H2V7GAFX2:4:21604:1569:18954/1‑151 (MQ=60)
tcttcccacccataccaccaaacaaggcccctactccacacaatttattgatgtctactcgtgcggcatttTGTCGTTATAGGGCCGCAAAG‑CGGCCCCC‑‑TCGGTTTTCAGCTGGCAGAAATTACTTCTGCTTCACACCTTCGACACTG < NB501016:282:H2V7GAFX2:1:11304:25219:1812/78‑1 (MQ=60)
GCTTCGCAGCCCTATCACGACACAAGGCCGCTCCTGCAGAGAATTTCTTGATCTCTACAGGAGCGGCCTTGTGTCGTGGTTGGGCCGCAAAG‑CGGCCCCC‑‑GCGGGTTTGAGCTGGCAGAAATTtattatgcttgaaaccgtagagatcggg > NB501016:282:H2V7GAFX2:2:21103:25821:18160/1‑123 (MQ=60)
CTTCGCAGCCCTATCACGACACAAGGCCGCTCCTGCAGAGAATTTCTTGATCTCTACAGGAGCGGCCTTGTGTCGTGATAGGGCCGCAAAG‑CGGCCCCC‑‑TCGGTTTTCAGCTGGCAGAAATTACTTCTGCTTCACACCTTCGACACTGATT > NB501016:282:H2V7GAFX2:1:21211:12241:10705/1‑151 (MQ=60)
CTTCGCAGCCCTATCACGACACAAGGCCGCTCCTGCAGAGAATTTCTTGATCTCTACAGGAGCGGCCTTGTGTCGTGATAGGGCCGCAAAG‑CGGCCCCC‑‑GCGGTTTTCAGCTGGCAGAAATTACTTCTGCTTCTCACCTTAGACACTGAT > NB501016:282:H2V7GAFX2:2:21211:2494:1927/1‑150 (MQ=60)
GCCCTATCACGACACAAGGCCGCTCCTGCAGAGAATTTCTTGATCTCTACAGGAGCGGCCTTGTGTCGTGATAGGGCCGCAAAG‑CGGCCCCC‑‑TCGGTTTTCAGCTGGCAGAAATTTCTTCTGCTTCACACCTTCGACACTGATATCCAGGT > NB501016:282:H2V7GAFX2:4:21508:8518:16368/1‑151 (MQ=60)
ATCACGACACAAGGCCGCTCCTGCAGAGAATTTCTTGATCTCTACAGGAGCGGCCTTGTGTCGTGATAGGGCCGCAAAG‑CGGCCCCC‑‑TCGGTTTTCAGCTGGCAGAAATTACTTCTGCTTCACACCTTCGACACTGATATCCAGGTCCAGG > NB501016:282:H2V7GAFX2:2:11310:2760:15688/1‑151 (MQ=60)
ACGACACAAGGCCGCTCCTGCAGAGAATTTCTTGATCTCTACAGGAGCGGCCTTGTGTCGTGATAGGGCCGCAAAG‑CGGCCCCC‑‑TCGGTTTTCAGCTGGCAGAAATTACTTCTGCTTCACACCTTCGACACTGATATCCAGGTCCAGGGTG > NB501016:282:H2V7GAFX2:2:21110:14647:6136/1‑151 (MQ=60)
CAAGGCCGCTCCTGCAGAGAATTTCTTGATCTCTACAGGAGCGGCCTTGTGTCGTGGTAGGGCCGCAAAG‑CGGCCCCC‑‑GCGGGTTTACGCTGGCAGAAATTAGTTCTGCTTCACACCGTCGACACTGATAACCACGTCCAGGGTCTGGGA > NB501016:282:H2V7GAFX2:2:21207:26207:17607/1‑150 (MQ=60)
GGCCGCTCCTGCAGAGAATTTCTTGATCTCTACAGGAGCGGCCTTGTGTCGTGATAGGGCCGCAAAG‑CGGCCCCC‑‑TCGGTTTTCAGCTGGCAGAAATTACTTCTGCTTCACACCTTCGACACTGATATCCAGGTCCAGGGTCTGCGAAGT > NB501016:282:H2V7GAFX2:1:21209:4904:8519/1‑150 (MQ=60)
ctcctgtagagatcaagaaattatctgCAGGAGCGGCCTTGTGTCGTGATAGGGCCGCAAAG‑CGGCCCCC‑‑TCGGTTTTCAGCTGGCAGAAATTACTTCTGCTTCACACATTCGACACTGATATACAGGTCCAGGGTCTGCGAAGTAGCACC > NB501016:282:H2V7GAFX2:3:11610:5241:8580/28‑151 (MQ=60)
GCAGAGAATTTCTTGATCTCTACAGGAGCGGCCTTGTGTCGTGATAGGGCCGCAAAG‑CGGCCCCC‑‑TCGGTTTTCAGCTGGCAGAAATTACTTCTGCTTCACACCTTCGACACTGATATCCAGGTCCAGGGTCTGCGAAGTAGCACCCGGGC > NB501016:282:H2V7GAFX2:4:11501:14221:6582/1‑151 (MQ=60)
TTCTTGATCTCTACAGGAGCGGCCTTGTGTCGTGATAGGGCCGCAAAG‑CGGCCCCC‑‑TCGGTTTTCAGCTGGCAGAAATTAATTCTGCTTAACACCTTCGACACTGATATACAGGTCCAGGGTCTGCGAAGTAGCACCCGGGCCTTTGATGC > NB501016:282:H2V7GAFX2:2:11104:15147:2672/1‑151 (MQ=60)
ATCTCAACAGGAGCGGCCTTGTGTCGTTATAGGGCCGCAAAG‑CGGCCCCC‑‑TCGGTTTTCAGCTGGCAGAAATTACTTCTGCTTCACACCTTCGACACTGATATCCAGGTCCAGGGTCTGCGAAGTAGCACCCGGGCCTTTGATGCCGAAG < NB501016:282:H2V7GAFX2:1:11305:25938:14726/150‑1 (MQ=60)
CTCTACAGGAGCGGCCTTGTGTCGTGAAAGGGCCGCAAAG‑CGGCCCCC‑‑TCGGATTTCAGCTGGCAGAAAataaatcttcttaacaccatcgccactcataaacacgtccaagctctgagaagtataacccgggccttttaagccgaagtac > NB501016:282:H2V7GAFX2:4:21610:25999:8363/1‑69 (MQ=34)
ACAGGAGGGGCTTTGTGTGGTGATAGGGCGGCAAAG‑C‑G‑GCCCCATCGGTTTTCAGCTGGCAGAAATTACTTCTGCTTCACACCTTCGACACTGATATCCAGGTCCAGGGTCTGCGAAGTAGCACCCGGGCCTTTGATGCCGAAGTCGTTCA < NB501016:282:H2V7GAFX2:3:21410:21593:13642/151‑1 (MQ=60)
ACAGGAGCGGCCTTGTGTCGTGATAGGGCCGCAAAG‑CGGCCCCC‑‑TCGGTTTTCAGCTGGCAGAAATTACTTCTGCTTCACACCTTCGACACTGATATCCAGGTCCAGGGTCTGCGAAGTAGCACCCGGGCCTTTGATGCCGAAGTCGTTC < NB501016:282:H2V7GAFX2:1:11304:20928:16318/150‑1 (MQ=60)
CAGGAGCGGCCTTGTGTCGTGATAGGGCCGCAAAG‑CGGCCCCC‑‑TCGGTTTTCAGCTGGCAGAAATTACTTCTGCTTCACACCTTCGACACTGATATCCAGGTCCAGGGTCTGCGAAGTAGCACCCGGGCCTTTGATGCCGAAGTCGTTC > NB501016:282:H2V7GAFX2:2:11210:24632:17919/1‑149 (MQ=60)
CGCGGCGTTGTGGCGTGATAGGGCCGAAAAG‑CGGCCCCC‑‑TCGGTTTTCAGCTGGCAGAAATTACTTCTGCTTCACACCTTCGACACTGATATCCAGGTCCAGGGTCTGCGAAGTAGCACCCGGGCCTTTGATGCCGAAGTCGTTCAGGTTC < NB501016:282:H2V7GAFX2:2:11104:8182:18349/151‑1 (MQ=60)
GGCCTTGTGTCGTGATAGGGCCGCAAAGAG‑GCCCCC‑‑TCGGTTTTCAGCTGGCAGAATTTACTTCTGCTTCACACCTTCGACACTGATATCCAGGTCCAGGGTCTGGGAAGTAGCACCCGGGCCTTTGATGCCGAAGTCGTTCAGGTTCAGC < NB501016:282:H2V7GAFX2:1:21205:9373:16052/151‑1 (MQ=60)
GCCTTGTGTCGTGATAGGGCCGCAAAGCC‑GCCCCC‑‑TCCGTTTTAAGCAGGCAGAAATTAAATAAGCTTCACACCATAGACACTGAAATCCACGTACAGGGTCTTCGAAATATCACCCGGGCCTTTGATGCCGAAGTagttaagacatccg > NB501016:282:H2V7GAFX2:1:21306:5996:6200/1‑136 (MQ=34)
GCCTTGTGTCGTGATAGGGCCGCAAAG‑CGGCCCCC‑‑TCGGTTTTCAGCTGGCAGAAATTACTTCTGCTTCACACCTTCGACACTGATATCCAGGTCCAGGGTCTGCGAAGTAGCACCCGGGCCTTTGATGCCGAAGTCGTTCAGGTTCAGCG > NB501016:282:H2V7GAFX2:4:11510:20462:10994/1‑151 (MQ=60)
TGTCGTGATAGGGCCGCAAAG‑CGGCCCCC‑‑TCGGTTTTCAGCTGGCAGAAATTACTTCTGCTTCACACCTTCGACACTGATATCCAGGTCCAGGGTCTGCGAAGTAGCACCCGGGCCTTTGATGCCGAAGTCGTTCAGGTTCAGCGTGGTGG > NB501016:282:H2V7GAFX2:3:11504:9783:16465/1‑151 (MQ=60)
GTCGTGATAGGGCCGCAAAG‑CGGCCCCC‑‑TCGGTTTTCAGCTGGCAGAAATTACTTCTGCTTCACACCTTCGACACTGATATCCAGGTCCAGGGTCTGCGAAGTAGCACCCGGGCCTTTGATGCCGAAGTCGTTCAGGTTCAGCGTGGTGG < NB501016:282:H2V7GAFX2:3:21511:7683:16304/150‑1 (MQ=60)
GTCGTGATAGGGCCGCAAAG‑CGGCCCCC‑‑TCGGTTTTCAGCTGGCAGAAATTACTTCTGCTTCACACCTTCGACACTGATATCCAGGTCCAGGGTCTGCGAAGTAGCACCCGGGCCTTTGATGCCGAAGTCGTTCAGGTTCAGCGTGGT > NB501016:282:H2V7GAFX2:4:21611:24883:5308/1‑148 (MQ=60)
TGATAGGGCCGCAAAG‑CGGCCCCC‑‑TCGTTTTTCAGCTGGCAGAAATTACTTCTGCTTCACACCTTCGACACTGATATCCAGGTCAAGGGTCTGCGAAGTAGAACCCGGCCCTTTGATGAGGAAGACGTTCAGGATAAGCGAGGTGGTGGCG > NB501016:282:H2V7GAFX2:3:11410:24873:4188/1‑151 (MQ=60)
TAGGGCCGCAAAG‑CGGCCCCC‑‑TCGGTTTTCAGCTGTCAGAAATTACTTCTGCTTCACACCTTCGACACTGATATCAAGATCCAGGGTCTGCGAAGTAGCACCCGGGCCTTTGATGCCGAAGTCGTTCATGTTCAGCGTGGTGGTGGCGTTG > NB501016:282:H2V7GAFX2:4:11607:1657:7687/1‑151 (MQ=60)
GGGCCGCAAAG‑CGGCCCCC‑‑TCGGTTTTCAGCTGGCAGAAATTACTTCTGCTTCACACCTTCGACACTGATATCCAGGTCCAGGGTCTGCGAAGTAGCACCCGGGCCTTTGATGCCGAAGTCGTTCAGGTTCAGCGTGGTGGTGGCGTTGA > NB501016:282:H2V7GAFX2:3:21406:14691:19802/1‑150 (MQ=60)
GGGCCGCAAAG‑CGGCCCCC‑‑TCGGTTTTCAGCTGGCAGAAATTACTTCTGCTTCACACCTTCGACACTGATATCCAGGTCCAGGGTCTGCGAAGTAGCACCCGGGCCTTTGATGCCGAAGTCGTTCAGGTTCAGCGTGGTGGTGGCGTTGA > NB501016:282:H2V7GAFX2:2:11108:7550:12416/1‑150 (MQ=60)
GGCCGCAAAG‑CGGCCCCC‑‑TCGGTTTTCAGCTGGCAGAAATTACTTCTGCTTCACACCTTCGACACTGATATCCAGGTCCAGGGTCTGCGAAGTAGCACCCGGGCCTTTGATGCCGAAGTCGTTCAGGTTCAGCGTGGTGGTGGCGTTGAAG < NB501016:282:H2V7GAFX2:4:11512:6747:12587/151‑1 (MQ=60)
GCCGCAAAG‑CGGCCCCC‑‑TCGGTTTTCAGCTGGCAGAAATTACTTCTGCTTCACACCTTCGACACTGATATCCAGGTCCAGGGTCTGCGAAGTAGCACCCGGGCCTTTGATGCCGAAGTCGTTCAGGTTCAGCGTGGTGGTGGCGTTGAAGC > NB501016:282:H2V7GAFX2:4:11501:7843:16465/1‑151 (MQ=60)
GCAAAG‑CGGCCCCC‑‑TCGGTTTTCAGCTGGCAGAAATTACTTCTGCTTCACACCTTCGACACTGATATCCAGGTCCAGGGTCTGCGAAGTAGCACCCGGGCCTTTGATGCCGAAGTCGTTCAGGTTCAGCGTGGTGGTGGCGTTGAAGCCAG < NB501016:282:H2V7GAFX2:2:21110:18168:6477/151‑1 (MQ=60)
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CCCAGCGCTGCTGACCCGCAAGGGCTGATAGAAGTACCGAGGGGGCTGCTTCGCAGCCCTATCACGACACAAGGCCGCTCCTGCAGAGAATTTCTTGATCTCTACAGGAGCGGCCTTGTGTCGTGATAGGGCCGCAAAG‑C‑GCGCCC‑‑TCGGTTTTCAGCTGGCAGAAATTACTTCTGCTTCACACCTTCGACACTGATATCCAGGTCCAGGGTCTGCGAAGTAGCACCCGGGCCTTTGATGCCGAAGTCGTTCAGGTTCAGCGTGGTGGTGGCGTTGAAGCCAG > NC_002947_CJ‑RC/5677426‑5677708
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| Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 0 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
