Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A3 F43 I1 R1
|
57 |
79.1 |
3360134 |
98.7% |
3316452 |
147.0 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| RA |
NC_002947_CJ‑RC |
4,713,170 |
A→C |
Q432P (CAG→CCG) |
PP_4171 → |
hypothetical protein |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NC_002947_CJ‑RC | 4,713,170 | 0 | A | C | 94.5%
| 172.1
/ ‑6.3
| 55 | Q432P (CAG→CCG) | PP_4171 | hypothetical protein |
| Reads supporting (aligned to +/- strand): ref base A (0/0); major base C (36/16); minor base G (0/3); total (36/19) |
| Fisher's exact test for biased strand distribution p-value = 3.69e-02 |
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 |
CCGCTATGACCTGGAAATCCAGGACACCCTGAGCCTGACCGACAGCCTGCGCCTGCTCAGTGGCATGAACTACCGCTATGATCGCGCCGACTCGCAGACTTACTTCAACGGCAGCATCGACGACCAGACCTGGCGCCTGTTCGGCCAGCTGGAATGGCGGGCCGACGAGCACTGGATACTGCAAGGTGGGGCCATGTTCGAAGACTCGCGCCTGTCTGGCAGTTCGCTGACCCCGCGCGTTGCGGTCAACTACCTGATCACCCCGCGCCACGGCCTGCGTGCGGTGT > NC_002947_CJ‑RC/4713024‑4713310
|
ccGCTATGACCTGGAAATCCAGGACACCCTGAGCCTGACCGACAGCCTGCGCCTGCTCAGTGGCATGAACTACCGCTATGATCGCGCCGACTCGCAGACTTACTTCAACGGCAGCATCGACGACCAGACCTGGCGCCTGTTCGGCCCGc > 4:351427/1‑149 (MQ=255)
ccGCAATGACCTGGAAAT‑CAGGACACCCTGAGCCTGACCGACAGCCTGCGCCTGCTCAGTGGCATGAACTACCGCTATGATCGCGCCGACTCGCACACTTACTTCAACGCCAGCATCGACGACCAGACCTGGCGCCTGTTCGGCCCGCt < 7:317938/149‑1 (MQ=255)
gCTATGACCTGGAAATCCAGGACACCCTGAGCCTGACCGACAGCCTGCGCCTGCTCAGTGGCATGAACTACCGCTATGATCGCGCCGACTCGCAGACTTACTTCAACGGCAGCATCGACGACCAGACCTGGCGCCTGTTCGGCCCGCTg > 1:283163/1‑149 (MQ=255)
gCTATGACCTGGAAATCCAGGACACCCTGAGCCTGACCGACAGCCTGCGCCTGCTCAGTGGCATGAACTACCGCTATGATCGCGCCGACTCGCAGACTTACTTCAACGGCAGCATCGACGACCAGACCTGGCGCCTGTTCGGCCCGCTg < 8:175658/149‑1 (MQ=255)
ccTGGAAATCCGGGACACCCTGAGCCTGACCGACAGCCTGCGCCTGCTCAGTGGCATGAACTACCGCTATGATCGCGCCGACTCGCAGACTTACTTCAACGGCAGCATCGACGACCAGACCTGGCGCCTGTTCGGCCCGCTGGAATGGc < 4:114078/149‑1 (MQ=255)
ccTGGAAATCCAGGACACCCTGAGCCTGACCGACAGCCTGCGCCTGCTCAGTGGCATGAACTACCGCTATGATCGCGCCGACTCGCAGACTTACTTCAACGGCAGCATCGACGACCAGACCTGGCGCCTGTTCGGCCCGCt < 6:358626/141‑1 (MQ=255)
ccTGGAAATCCAGGACACCCTGAGCCTGACCGACAGCCTGCGCCTGCTCAGTGGCATGAACTACCGCTATGATCGCGCCGACTCGCAGACTTACTTCAACGGCAGCATCGACGACCAGACCTGGCGCCTGTTCGGCCCGCt > 5:358626/1‑141 (MQ=255)
ggAAATCCAGGACACCCTGAGCCTGACCGACAGCCTGCGCCTGCTCAGTGGCATGAACTACCGCTATGATCGCGCCGACTCGCAGACTTACTTCAACGGCAGCATCGACGACCAGACCTGGCGCCTGTTCGGCCCGCTGGAATGGCggg > 1:47023/1‑149 (MQ=255)
gAAATCCAGGACACCCTGAGCCTGACCGACAGCCTGCGCCTGCTCAGTGGCATGAACTACCGCTATGATCGCGCCGACTCGCAGACTTACTTCAACGGCAGCATCGACGACCAGACCTGGCGCCTGTTCGGCCCGCTGGAATGGCGGGc > 8:430183/1‑149 (MQ=255)
aaaTCCAGGACACCCTGAGCCTGACCGACAGCCTGCGCCTGCTCAGTGGCATGAACTACCGCTATGATCGCGCCGACTCGCAGACTTACTTCAACGGCAGCATCGACGACCAGACCTGGCGCCTGTTCGGCCCGCTGGAATGGCGGGcc < 3:335827/149‑1 (MQ=255)
ccTGAGCCTGACCGACAGCCTGCGCCTGCTCAGTGGCATGAACTACCGCTATGATCGCGCCGACTCGCAGACTTACTTCAACGGCAGCATCGACGACCAGACCTGGCGCCTGTTCGGCCCGCTGGAATGGCGGGCCGACGAGCACTGGa > 7:214534/1‑149 (MQ=255)
ccTGAGCATGACCGACAGCCTGCGCCTGCTCAGTGGCATTAACTACCGCTATGATCGCGCCGACTCGCAGACATAATACAACGGAAGCGTCCACGACCAGACCTGGCGCCTGTTCGGCCCGCTGGAAAGGGGGGACGAGGAGGAATgg > 4:282068/1‑148 (MQ=255)
tGAGCCTGACCGACAGCCTGCGCCTGCTCAGTGGCATGAACTACCGCTATGATCGCGCCGACTCGCAGACTTACTTCAACGGCAGCATCGACGACCAGACCTGGCGCCTGTTCGGCCCGCTGGAATGGCGGGCCGACGAGCCCTGGATa > 6:132420/1‑149 (MQ=255)
tGAGCCTGACCGACAGCCTGCGCCTGCTCAGTGGCATGAACTACCGCTATGATCGCGCCGACTCGCAGACTTACTTCAACGGCAGCATCGACGACCAGACCTGGCGCCTGTTCGGCCCGCTGGAATGGCGGGCCGACGAGCACTGGAt > 3:206272/1‑148 (MQ=255)
tGAGCCTGACCGACAGCCTGCGCCTGCTCAGTGGCATGAACTACCGCTATGATCGCGCCGACTCGCAGACTTACTTCAACGGCAGCATCGACGACCAGACCTGGCGCCTGTTCGGCCCGCTGGAATGGCGGGCCGACGAGCACTGGATa > 3:300522/1‑149 (MQ=255)
gACCGACAGCCTGCGCCTGCTCAGTGGCATGAACTACCGCTATGATCGCGCCGACTCGCAGACTTACTTCAACGGCAGCATCGACGACCAGACCTGGCGCCTGTTCGGCCCGCTGGAATGGCGGGCCGACGAGCACTGGATACTGCAAg > 7:166912/1‑149 (MQ=255)
ccccccgcctgcgcctgcGCCGTGGATTCAACTACCGCTATGAGCCCCCCGACCCCCTCACTTACTTCACCGCCCCCACCCCCCCCCCCCCCTGGCGCCTGTGCGCCCCGCTGCATGGGGGGGCCGACGAGCACTGGATACTGCAAGGt < 6:5339/143‑1 (MQ=255)
cctgcgcctgcTCAGTGGCATGAACTACCGCTATGATCGCGCCGACTCGCAGACTTACTTCAACGGCAGCATCGACGACCAGACCTGGCGCCTGTTCGGGCCGGGGGTATGGGGGGCCGCCGAGCACAGGGTTCTGGAAGgggggggcc > 3:37952/1‑146 (MQ=255)
ctgcgcctgcTCAGTGGCATGAACTACCGCTATGATCGCGCCGACTCGCAGACTTACTTCAACGGCAGCATCGACGACCAGACCTGGCGCCTGTTCGGCCCGCTGGAATGGCGGGCCGCCGAGCACTGGATACTGCAAGGTGGGGCCAt > 3:205066/1‑149 (MQ=255)
ctgcgcctgcTCAGTGGCATGAACTACCGCTATGATCGCGCCGACTCGCAGACTTACTTCAACGGCAGCATCGACGACCAGACCTGGCGCCTGTTCGGCCCGCTGGAATGGCGGGCCGACGAGCACTGGATACTGCAAGGTGGGGCCAt > 1:255190/1‑149 (MQ=255)
cgcctgcTCAGTGGCATGAACTACCGCTATGATCGCGCCGACTCGCAGACTTACTTCAACGGCAGCATCGACGACCAGACCTGGCGCCTGTTCGGCCCGCTGGAATGGCGGGCCGACGAGCACTGGATACTGCAAGGTGGGGCCATGt > 6:315963/1‑148 (MQ=255)
ggcTCTGGGGCATCAACTACCGCTATGACCGCGCCGACTCGCAGACTTACTTCAACGGCAGCATCCACCACCACACCTGGCGCCTGTTCGGCCCGCTGTAAGGGCGGGCCGACGAGCACTGGATACTGCAAGGTGGGGCCATGTTCGaa < 2:37390/148‑1 (MQ=255)
gcTCAGTGGCATTAACTACCGCTATGATCGCGCCGACTCGCAGACTTACTTCAACGGCAGCATCGACGACCAGACCTGGCGCCTGTTCGGCCCGCTGGAATGGCGGGCCGCCGAGCACTGGATACTGCAAGGTGGGGCCAAGttgg > 5:308310/1‑144 (MQ=255)
cTCAGTGCCATCAACTCCCGCTATGATCGCGCCGACTCCCAGACTTCCTACAACGGCACCACGGACGACCAGACCTGGCGCCTGTTGGGCCGGCTGTAAGGGCGGGCCGACGAGCACTGGATACTGCAAGGTGGGGCCATGTTCGAAg < 8:295948/148‑1 (MQ=255)
tgTGGAATTAACTACCGTTATGTTCGCGCCTAGTCGCATACTTACTTAACGGGAAGTATCTACGACCTTTCTTGGCGCCTGTTCGGCCCGGTGTAAGGGGGGGCGGACGAGCACTGGATACTGCAAGGTGGGGCCATGTTCGAAGACTc < 2:56196/148‑1 (MQ=255)
tGGAATTAACTACCGCTATGATCGCGCCGACTCGAATACTTACTTCAACGGCAGCATCGACCACAAGACCTGGCGCCTGTTCGGCCCGCTGTAATGGCGGGCCGACGAGCACTGGATACTGCAAGGTGGGGCCATGTTCGAAGACTcgc < 6:349916/149‑1 (MQ=255)
gCATGAACTACCGCTATGATCGCGCCGACTCGCAGACTTACTTCAACGGCAGCATCGACGACCAGACCTGGCGCCTGTTCGGCCCGCTGGAATGGCGGGCCGACGAGCACTGGATACTGCAAGGTGGGGCCATGTTCGAAGACTCgcgc > 2:31595/1‑149 (MQ=255)
cATGAACTACCGCTATGATCGCGCCGACTCGCAGACTTACTTCAACGGCAGCATCGACGACCAGACCTGGCGCCTGTTCGGCCCGCGGGAAATGCGGGGCGACGAGCACTCGATACATCAAGCTGGGGCCATGTTCGAAGAcaagcccc > 3:328286/1‑142 (MQ=255)
ccGCTATGATCGCGCCGACTCGCAGACTTACTTCAACGGCAGCATCGACGACCAGACCTGGCGCCTGTTCGGCCCGCTGGAATGGCGGGCCGACGAGCACTGGATACTGCAAGGTGGGGCCATGTTCGAAGACTCGCGCCTGTCTgg > 2:15437/1‑147 (MQ=255)
ccGCTATGATCGCGCCGACTCGCAGACTTACTTCAACGGCAGCATCGACGACCAGACCTGGCGCCTGTTCGGCCCGCTGGAATGGCGGGCCGACGAGCACTGGATACTGCAAGGTGGGGCCATGTTCGAAGACTCGCGCCTGTCTGGCa < 6:203857/149‑1 (MQ=255)
gCTATGATCGCGCCGACTCGCAGACTTACTTCAACGGCAGCATCGACGACCAGACCTGGCGCCTGTTCGGCCCGCTGGAATGGCGGGCCGACGAGCACTGGATACTGCAAGGTGGGGCCATGTTCGAAGACTCGCGCCTGTCTGGCAGt < 2:47023/149‑1 (MQ=255)
cTATGATCGCGCCGACTCGCAGACTTACTTCAACGGCAGCATCGACGACCAGACCTGGCGCCTGTTCGGCCCGCTGGAATGGCGGGCCGACGAGCACTGGATACTGCAAGGTGGGGCCATGTTCGAAGACTCGCGCCTGTCTGGCAGtt > 5:223486/1‑149 (MQ=255)
gcgcCGACTCGCAGACTTACTTCAACGGCAGCATCGACGACCAGACCTGGCGCCTGTTCGGCCCGCTGGAATGGCGGGCCGCCGAGCACTGGATACTGCAAGGTGGGGCCATGTTCGAAGACTCGCGCCTGTCTGGCAGTTCGCTGccc > 1:373729/1‑149 (MQ=255)
aCTCGCAGACTTACTTCGACGGCAGCATCGACGACCAGACCTGGCGCCTGTTCGGCCCCCTGGAATTGCGGGCCGACCAGCACTGGATACTGCAAGGTGGGGCCATGTTAGAATACTCGCGCCTGTCAGGCAGTTCGCTGACCCcgcgc > 4:199987/1‑149 (MQ=255)
aCTCGCAGACTTACTTCAACGGCAGCATCGACGACCAGCCCTGGCGCCTGTTCGGCCCGCTGGAAGGGCGGGCCGACGAGCACTGGATACTGCAAGGTGGGGCCATGTTCGAAGACTCGCGCCTGTCTGGCAGTTCGCTGACCCcgcgc < 6:365061/149‑1 (MQ=255)
tCGGAGACTTACTTCAACGGCAGCATCGACGACCAGACCTGGCGCCAGATCGGCCCGCTGGAATGGCGCGGCGACCAGCTCTGGATAATGCAAGGTGGGTCCTTGTTCCAAGACTCGCGCATGTCTGGGAGTTCGCTGACACcgagcct > 8:185002/1‑147 (MQ=255)
cGCAGACTTACTTCAACGGCAGCATCGACGACCAGACCTGGCGCCTGTTCGGCCCGCTGGAATGGCGGGCCGACGAGCACTGGATACTGCAAGGTGGGGCCATGTTCGAAGACTCGCGCCTGTCTGGCAGTTCGCTGACCCCGCGCGtt > 8:370610/1‑149 (MQ=255)
gCAGACTTACTTCAACGGCAGCATCGACGACCAGACCTGGCGCCTGTTCGGCCCGCTGGAATGGCGGGCCGCCGAGCACTGGATACTGCAAGGTGGGGCCATGTTCGAAGACTCGCGCCTGTCTGGCAGTTCGCTGACCCCGCGCGGTg > 5:383834/1‑149 (MQ=255)
gCAGACTTACTTCAACGGCAGCATCGACGACCAGACCTGGCGCCTGTTCGGCCCGCTGGAAAGGCGGGCCGACGAGCACTGGATACTGCAAGGTGGGGCCATGTTCGAAGACTCGCGCCTGTCTGGCAGTTCGCTGACCCCGCGCGTTg > 4:210942/1‑149 (MQ=255)
cAGACTTACTTCAACGGCAGCATCGACGACCAGACCTGGCGCCTGTTCGGCCCGCTGGAATGGCGGGCCGACGAGCACTGGATACTGCAAGGTGGGGCCATGTTCGAAGACTCGCGCCTGTCTGGCAGTTCGCTGACCCCGCGCGTTGc > 5:400388/1‑149 (MQ=255)
cttacttCAACGGCAGCATCGACGACCAGACCTGGCGCCTGTTCGGCCCGCTGGAATGGCGGGCCGACGAGCACTGGATACTGCAAGGTGGGGCCATGTTCGAAGACTCGCGCCTGTCTGGCAGTTCGCTGACCCCGCGCGTTGCGGTc < 2:255190/149‑1 (MQ=255)
tacttCAACGGCAGCATCGACGACCAGACCTGGCGCCTGTTCGGCCCGCTGGAATGGCGGGCCGACGAGCACTGGATACTGCAAGGTGGGGCCATGTTCGAAGACTCGCGCCTGTCTGGCAGTTCGCTGACCCCGCGCGTTGCGGTCaa > 6:83115/1‑149 (MQ=255)
ttCAACGGCAGCATCGACGACCAGACCTGGCGCCTGTTCGGCCCGCTGGAATGGAGGGCCGACGAGCACTGGATACTGCAAGGTGGGGCCATGTTCGAAGACTCGCGCCTGTCTGGCAGTTCGCTGACCCCGCGCGTTGCGGTCAACt > 8:64344/1‑148 (MQ=255)
accaTCGACGACCCCCCCGGGCGCGGGTGGGGCCGGCTGTATTGGCGGCCCGACGAGCACTGGATACTGCAAGGTGGGGCCATGTTCGAAGACTCGCGCCTGTCTGGCAGTTCGCTGACCCCGCGCGTTGCGGTCAACTACCTGATCAc < 4:119359/147‑1 (MQ=255)
caTCGACGACCAGACCTGGCGCCTGTTCGGCCCGCTGGAATGGCGGGCCGACGAGCACTGGATACTGCAAGGTGGGGCCATGTTCGAAGACTCGCGCCTGTCTGGCAGTTCGCTGACCCCGCGCGTTTCGGTCAACTACCTGATCAccc > 6:338199/1‑149 (MQ=255)
caTCGACGACCAGACCTGGCGCCTGTTCGGCCCGCTGGAATGGCGGGCCGACGAGCACTGGATACTGCAAGGTGGGGCCATGTTCGAAGACTCGCGCCTGTCGGGCAGTTCGCTGACCCCGCGCGTTGCGGTCAACAACCTGATCAccc > 6:225192/1‑149 (MQ=255)
gacCAGACATGGCGCCTGTACGGCCCGCGGGAATGGCGGGCAGACGAGAAAAGGATAATGCAATGTGGGGCCATGTTCGAAGAATCGCGCCTGTCAAGCAGTAAGCTGCCCACCAGCGTTTCGGTCAACTAACTGATAACCCAGCGccc > 2:142821/1‑148 (MQ=255)
cAGACCTGGCGCCTGTTCGGCCCGCTGGAATTGCGGGCCGACGAGCACTGGATACTGCAAGGTGGGGCCATGTTAGAAGACTAGCGCCTGTCTGGCAGTTAGCTGACCCCGCGCGTTGCGGTCAACAACCTGATCACCCCGCGCCACgg > 4:273557/1‑149 (MQ=255)
cAGACCTGGCGCCTGTTCGGCCCGCTGGAATGGCGGGCCGACGAGCACTGGATACTGCAAGGTGGGGCCATGTTCGAAGACTCGCGCCTGTCTGGCAGTTCGCTGACCCCGCGCGTTGCGGTCAACTACCTGATCACCCCGCGCCACgg > 2:40284/1‑149 (MQ=255)
aCCGGGCGCCTGTCGGGCCCGCTGTAATGGGGGGCCGACGAGCACTGGATACTGCAAGGTGGGGCCATGTTCGAAGACTCGCGCCTGTCTGGCAGTTCGCTGACCCCGCGCGTTGCGGTCAACTACCTGATCACCCCGCGCCACGGCCt < 4:206272/149‑1 (MQ=255)
gcttGTTCGGCCGGGTTTATTGGGGGGCGGACGAGCACTGGATACTGCAAGGTGGGGGCATGTTCGAAGACTCGCGCCTGTCTGGCAGTTCGCTGACCCCGCGCGTTGCGGTCAACTACCTGATCACCCCGCGCCACGGCCtgcgtgcg < 3:282068/146‑1 (MQ=255)
gcCTGTTCGGCCCGCTTTAATGGCGGGGCGACGAGCACTGGATACTGCAAGGTGGGGCCATGTTCGAAGACTCGCGCCTGTCTGGCAGTTCGCTGACCCCGCGCGTTGCGGTCAACTACCTGATCACCCCGCGCCACGGCCtgcgtgcg < 6:308310/149‑1 (MQ=255)
gcCTGTTCGGCCCGCTGGTATGGCGGGCCGACGAGCACTGGATACTGCAAGGTGGGGCCATGTTCGAAGACTCGCGCCTGTCTGGCAGTTCGCTGACCCCGCGCGTTGCGGTCAACTACCTGATCACCCCGCGCCACGGCCtgcgtgcg < 2:283757/149‑1 (MQ=255)
gTTCGGCCCGCTGGAATGGCGGGCCGACGAGCACGGGATACTGCAAGGTGGGGCCATGTTAGAAGCCTCGCGCCTGTCTGGCAGTTCGCTGACCCCGCGCGTTGCGGTCAACTACATGATAACCCCGCGCCACGGCCTGCGTGCCgtg > 1:340749/1‑148 (MQ=255)
ttCGGCCCGCTGGAATGGCGGGCCGACGAGCAATGGATACTGCAAGGTGGGGCCATGTTCGAAGACTAGCGCCTGTCTGTCAGTTCGCTGACCCCGCGCGTTGCGGTCAACTACCTGATAACCCCGCGCCACGGCCTGCGTGCCgtgt > 6:415904/1‑148 (MQ=255)
|
CCGCTATGACCTGGAAATCCAGGACACCCTGAGCCTGACCGACAGCCTGCGCCTGCTCAGTGGCATGAACTACCGCTATGATCGCGCCGACTCGCAGACTTACTTCAACGGCAGCATCGACGACCAGACCTGGCGCCTGTTCGGCCAGCTGGAATGGCGGGCCGACGAGCACTGGATACTGCAAGGTGGGGCCATGTTCGAAGACTCGCGCCTGTCTGGCAGTTCGCTGACCCCGCGCGTTGCGGTCAACTACCTGATCACCCCGCGCCACGGCCTGCGTGCGGTGT > NC_002947_CJ‑RC/4713024‑4713310
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
BRESEQ :: bam2aln output
CCCGCTATGACCTGGAAATCCAGGACACCCTGAGCCTGACCGACAGCCTGCGCCTGCTCAGTGGCATGAACTACCGCTATGATCGCGCCGACTCGCAGACTTACTTCAACGGCAGCATCGACGACCAGACCTGGCGCCTGTTCGGCCAGCTGGAATGGCGGGCCGACGAGCACTGGATACTGCAAGGTGGGGCCATGTTCGAAGACTCGCGCCTGTCTGGCAGTTCGCTGACCCCGCGCGTTGCGGTCAACTACCTGATCACCCCGCGCCACGGCCTGCGTGCGGTGT > NC_002947_CJ‑RC/4713023‑4713310
|
CCCGCAATGACCTGGAAAT‑CAGGACACCCTGAGCCTGACCGACAGCCTGCGCCTGCTCAGTGGCATGAACTACCGCTATGATCGCGCCGACTCGCACACTTACTTCAACGCCAGCATCGACGACCAGACCTGGCGCCTGTTCGGCCCGCTG < NB501016:282:H2V7GAFX2:4:21505:10226:10014/151‑1 (MQ=60)
CGCTATGACCTGGAAATCCAGGACACCCTGAGCCTGACCGACAGCCTGCGCCTGCTCAGTGGCATGAACTACCGCTATGATCGCGCCGACTCGCAGACTTACTTCAACGGCAGCATCGACGACCAGACCTGGCGCCTGTTCGGCCCGCTGG > NB501016:282:H2V7GAFX2:1:21112:20699:8405/1‑151 (MQ=60)
CGCAATGACCTGGAAATCCCGGACACCCTGAGCCTCACCGACAGCCTGCGCCTGCTCTGTGGCTTGACCTACCGCTATGATCGCGCCGACTCGCTGACTTACTTCAACGGCAGCATCGACGACCAGACCTGGCGCCTGTTCGGCCCGCTGG < NB501016:282:H2V7GAFX2:2:11102:24674:4607/151‑1 (MQ=60)
ACCTGGAAATCCAGGACACCCTGAGCCTGACCGACAGCCTGCGCCTGCTCAGTGGCATGAACTACCGCTATGATCGCGCCGACTCGCAGACTTACTTCAACGGCAGCATCGACGACCAGACCTGGCGCCTGTTCGGCCCGCTG > NB501016:282:H2V7GAFX2:3:21602:7824:9669/1‑143 (MQ=60)
TGGAAATCCAGGACACCCTGAGCCTGACCGACAGCCTGCGCCTGCTCAGTGGCATGAACTACCGCTATGATCGCGCCGACTCGCAGACTTACTTCAACGGCAGCATCGACGACCAGACCTGGCGCCTGTTCGGCCCGCTGGAATGGCGGGC > NB501016:282:H2V7GAFX2:1:11108:23996:8138/1‑151 (MQ=60)
GAAATCCAGGACACCCTGAGCCTGACCGACAGCCTGCGCCTGCTCAGTGGCATGAACTACCGCTATGATCGCGCCGACTCGCAGACTTACTTCAACGGCAGCATCGACGACCAGACCTGGCGCCTGTTCGGCCCGCTGGAATGGCGGGCCG < NB501016:282:H2V7GAFX2:2:21212:2407:13897/151‑1 (MQ=60)
CCCTGAGCCTGACCGACAGCCTGCGCCTGCTCAGTGGCATGAACTACCGCTATGATCGCGCCGACTCGCAGACTTACTTCAACGGCAGCATCGACGACCAGACCTGGCGCCTGTTCGGCCCGCTGGAATGGCGGGCCGACGAGCACTGGAT > NB501016:282:H2V7GAFX2:4:11612:26046:11430/1‑151 (MQ=60)
CTGAGCCTGACCGACAGCCTGCGCCTGCTCAGTGGCATGAACTACCGCTATGATCGCGCCGACTCGCAGACTTACTTCAACGGCAGCATCGACGACCAGACCTGGCGCCTGTTCGGCCCGCTGGAATGGCGGGCCGACGAGCACTGGATAC > NB501016:282:H2V7GAFX2:2:21206:10963:8733/1‑151 (MQ=60)
CTGAGCCTGACCGACAGCCTGCGCCTGCTCAGTGGCATGAACTACCGCTATGATCGCGCCGACTCGCAGACTTACTTCAACGGCAGCATCGACGACCAGACCTGGCGCCTGTTCGGCCCGCTGGAATGGCGGGCCGACGAGCACTGGATA > NB501016:282:H2V7GAFX2:2:11311:2313:14332/1‑150 (MQ=60)
TGACCGACAGCCTGCGCCTGCTCAGTGGCATGAACTACCGCTATGATCGCGCCGACTCGCAGACTTACTTCAACGGCAGCATCGACGACCAGACCTGGCGCCTGTTCGGCCCGCTGGAATGGCGGGCCGACGAGCACTGGATACTGCAAGG > NB501016:282:H2V7GAFX2:4:11604:17585:9040/1‑151 (MQ=60)
GACCGACAGCCTGCGCCTGCTCAGTGGAATCAACTACCGATATGATCGCGCCGACGCCCAGACTTACTACAACGCCACCAGCGACGACCACACCTGGCGCCTGTTGGGCCCGCTGTATTGGCGGGCCGACGAGCACTGGATACTGCAAGGT < NB501016:282:H2V7GAFX2:3:11607:7898:6764/151‑1 (MQ=60)
CCTGCGCCTGCTCAGTGGCATGAACTACCGCTATGATCGCGCCGACTCGCAGACTTACTTCAACGGCAGCATCGACGACCAGACCTGGCGCCTGTTCGGCCCGCTGGAATGGCGGGCCGCCGAGCACTGGATACTGCAAGGTGGGGCCATT > NB501016:282:H2V7GAFX2:1:21107:25466:11617/1‑151 (MQ=60)
CCTGCGCCTGCTCAGTGGCATGAACTACCGCTATGATCGCGCCGACTCGCAGACTTACTTCAACGGCAGCATCGACGACCAGACCTGGCGCCTGTTCGGCCCGCTGGAATGGCGGGCCGCCGAGCACTGGATACTGCAAGGTGGGGCCATG > NB501016:282:H2V7GAFX2:2:11311:23658:10683/1‑151 (MQ=60)
TGCTCAGTGGCATTAACTACCGCTATGATCGCGCCGACTCGCAGACTTACTTCAACGGCAGCATCGACGACCAGACCTGGCGCCTGTTCGGCCCGCTGGAATGGCGGGCCGCCGAGCACTGGATACTGCAAGGTGGGGCCAAGTTGGA > NB501016:282:H2V7GAFX2:3:21505:19919:18271/1‑148 (MQ=60)
GCATGAACTACCGCTATGATCGCGCCGACTCGCAGACTTACTTCAACGGCAGCATCGACGACCAGACCTGGCGCCTGTTCGGCCCGCGGGAAATGCGGGGCGACGAGCACTCGATACATCAAGCTGGGGCCATGTTCGAAGACaagccccc > NB501016:282:H2V7GAFX2:2:21211:11498:4526/1‑143 (MQ=60)
CCGCTATGATCGCGCCGACTCGCAGACTTACTTCAACGGCAGCATCGACGACCAGACCTGGCGCCTGTTCGGCCCGCTGGAATTGGGGGCCGGCGAGCCCTGGCTACTGCAAGGggggggcctggtgggagactcgcgccgggcggggcgt > NB501016:282:H2V7GAFX2:2:21102:21075:1360/1‑114 (MQ=60)
GCTATGATCGCGCCGACTCGCAGACTTACTTCAACGGCAGCATCGACGACCAGACCTGGCGCCTGTTCGGCCCGCTGGAATGGCGGGCCGACGAGCACTGGATACTGCAAGGTGGGGCCATGTTCGAAGACTCGCGCCTGTCTGGCAGTTG > NB501016:282:H2V7GAFX2:3:21402:23896:11856/1‑151 (MQ=60)
CGCGCCGACTCGCAGACTTACTTCAACGGCAGCATCGACGACCAGACCTGGCGCCTGTTCGGCCCGCTGGAATGGCGGGCCGCCGAGCACTGGATACTGCAAGGTGGGGCCATGTTCGAAGACTCGCGCCTGTCTGGCAGTTCGCTGCCCC > NB501016:282:H2V7GAFX2:1:21304:19758:17656/1‑151 (MQ=60)
CGCAGACTTACTTCAACGGCAGCATCGACGACCAGACCTGGCGCCTGTTCGGCCCGCTGGAATGGCGGGCCGCCGAGCACTGGATACTGCAAGGTGGGGCCATGTTCGAAGACTCGCGCCTGTCTGGCAGTTCGCTGACCCCGCGCGGTGC > NB501016:282:H2V7GAFX2:3:21606:24007:10404/1‑151 (MQ=60)
GCAGACTTACTTCAACGGCAGCATCGACGACCAGACCTGGCGCCTGTTCGGCCCGCTGGAATGGCGGGCCGACGAGCACTGGATACTGCAAGGTGGGGCCATGTTCGAAGACTCGCGCCTGTCTGGCAGTTCGCTGACCCCGCGCGTTGCG > NB501016:282:H2V7GAFX2:3:21609:2760:5769/1‑151 (MQ=60)
TTCAACGGCAGCATCGACGACCAGACCTGGCGCCTGTTCGGCCCCCGGGATTGGCGGGCCCCCCAGCACGGGGTAAGGCAAGGTGGGGCCATGTTCGAAaacacgcgccgggagggcagttaggtgcccccgcccgttgcgggcaacaac > NB501016:282:H2V7GAFX2:4:11605:22792:2989/1‑99 (MQ=40)
GCATCGACGACCAGACCTGGCGCCTGTTCGGCCCGCTGGAATGGCGGGCCGTCGAGCACTGGATACTGCAAGGTGGGGCCATGTTCGAAGACTCGCGCCTGTCTGGCAGTTCGCTGACCCCGCGCGTTGCGGTCAACTACGTGATCACCCC > NB501016:282:H2V7GAFX2:1:21204:9992:18595/1‑151 (MQ=60)
gggtcCGGCCCGCTGGAAGGGGGGGCCGACGAGCACTGGATACTGCAAGGTGGGGCCATGTTCGAAGACTCGCGCCTGTCTGGCAGTTCGCTGACCCCGCGCGTTGCGGTCAACTACCTGATCACCCCGCacgcaggccgtggcgcggggt < NB501016:282:H2V7GAFX2:4:21612:5541:11512/146‑22 (MQ=60)
TGTTCGGCCCGCTGGAATGGCGGGCCGACGAGCACGGGATACTGCAAGGTGGGGCCATGTTAGAAGCCTCGCGCCTGTCTGGCAGTTCGCTGACCCCGCGCGTTGCGGTCAACTACATGATAACCCCGCGCCACGGCCTGCGTGCcgtgg > NB501016:282:H2V7GAFX2:1:21210:13167:8156/1‑145 (MQ=60)
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CCCGCTATGACCTGGAAATCCAGGACACCCTGAGCCTGACCGACAGCCTGCGCCTGCTCAGTGGCATGAACTACCGCTATGATCGCGCCGACTCGCAGACTTACTTCAACGGCAGCATCGACGACCAGACCTGGCGCCTGTTCGGCCAGCTGGAATGGCGGGCCGACGAGCACTGGATACTGCAAGGTGGGGCCATGTTCGAAGACTCGCGCCTGTCTGGCAGTTCGCTGACCCCGCGCGTTGCGGTCAACTACCTGATCACCCCGCGCCACGGCCTGCGTGCGGTGT > NC_002947_CJ‑RC/4713023‑4713310
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| Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 0 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
