Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A2 F42 I4 R1
|
76 |
794.2 |
35354760 |
99.3% |
35107276 |
136.2 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| MC JC |
AE015451_phaM1 |
3,819,910 |
Δ966 bp |
coding (1‑966/966 nt) |
endA CDS (endonuclease I) → |
|
|
| | | | seq id |
start |
end |
size |
←reads |
reads→ |
gene |
description |
|---|
| * |
* |
÷ |
AE015451_phaM1 |
3819910 |
3820875 |
966 |
858 [0] |
[0] 859 |
endA CDS (endonuclease I) |
|
|
| |
seq id |
position |
reads (cov) |
reads (cov) |
score |
skew |
freq |
annotation |
gene |
product |
| * |
? |
AE015451_phaM1 |
= 3819909 | 0 (0.000) | 858 (1.080) |
124/270 |
0.2 |
100% |
intergenic (+14/‑1) |
PP_3374 CDS (conserved protein of unknown function)/endA CDS (endonuclease I) |
–/– |
| ? | AE015451_phaM1 |
3820876 = |
0 (0.000) | intergenic (+1/+42) |
endA CDS (endonuclease I)/ptxD CDS (putative phosphonate dehydrogenase) |
–/– |
GATK/CNVnator alignment
N/A
