Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A14 F35 I1 R1
|
74 |
857.2 |
37938082 |
99.4% |
37710453 |
136.3 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| MC JC |
AE015451_phaM1 |
5,565,181 |
Δ69 bp |
coding (337‑405/972 nt) |
miaA CDS (tRNA dimethylallyltransferase) ← |
|
|
| | | | seq id |
start |
end |
size |
←reads |
reads→ |
gene |
description |
|---|
| * |
* |
÷ |
AE015451_phaM1 |
5565181 |
5565249 |
69 |
1042 [0] |
[1] 1052 |
miaA CDS (tRNA dimethylallyltransferase) |
|
|
| |
seq id |
position |
reads (cov) |
reads (cov) |
score |
skew |
freq |
annotation |
gene |
product |
| * |
? |
AE015451_phaM1 |
= 5565180 | 0 (0.000) | 997 (1.270) |
110/248 |
0.4 |
100% |
coding (406/972 nt) |
miaA CDS (tRNA dimethylallyltransferase) |
|
| ? | AE015451_phaM1 |
5565250 = |
0 (0.000) | coding (336/972 nt) |
miaA CDS (tRNA dimethylallyltransferase) |
|
GATK/CNVnator alignment
N/A
