Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.

ALE, Flask, Isolate	Predicted Mutations	Mean Coverage	Total Reads	Percent Mapped	Mapped Reads	Average Read Length
A7 F90 I5 R1	24	61.2	1135137	88.5%	1004596	286.9

Breseq alignment

BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	1,529,175	T→C	pseudogene (1274/2037 nt)	rhsE →	pseudogene, Rhs family

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	1,529,175	0	T	C	100.0%	82.1 / NA	36	pseudogene (1274/2037 nt)	rhsE	pseudogene, Rhs family
Reads supporting (aligned to +/- strand): ref base T (0/0); new base C (20/16); total (20/16)

CGCTCCAGCAGGAAGGGAGTGAGAACGGCCACGGCGTGGTGTTCCCGGCTGAACTGGTGCGGCTGCTGGACAGGCTGGAGGAAGAAATCCGGGCAGACCGCGTGAGCAGTGAAAGCCGGGCGTGGCTTGCGCAGTGCGGGCTGACGGTGGAGCAACTGGCCAGACAGGTGGAGCCGGAATACACA‑CCGGCGCGAAAAGTTCATTTTTACCACTGCGACCACCGGGGCCTGCCGCTGGCGCTCATCAGCGAAGACGGCAATACGGCGTGGCGCGGGGAGTATGATGAATGGGGCAACCAGCTTAATGAGGAGAACCCGCATCACCTGCACCAGCCGTACCGTCTGCCAGGGCAGCAGCATGATGAGGAGTCGGGGCTGTACTATAACCGTCACCGGCACTACGATCCGTTGCAGGGGCGGTATATCACCCCGGACCCGATTGGGTTGAGAGGTGGATGGAATATGTATCAGT  >  NC_000913/1528977‑1529447

cGCTCCAGCAGGAAGGGAGTGAGAACGGCCACGGCGTGGTGTTCCCGGCTGAACTGGTCCGGCTGCTGGACAGGCTGGAGGAAGAAATCCGGGCCGACCGCGTGAGCAGTGACAGCCGGGCGTGGCTTGCGCAGTTCGGGCTGACGGTGGAGCAACTGCCCAGCCACGTGGAGCCGGCATACACC‑CCGGCGCGAAAAGCCCAACTTTATCACTGCCAACAACGGGTACTGCCGCTGACGCCGCTCAGCGAATACGCCACTACGGCGGGGCggggggcgattgcgtaattgggcaaacggcg                                                                                                                                                                            >  2:239934/1‑276 (MQ=11)

    ccAGCAGGAAGGGAGTGAGAACGGCCACGGCGTGGTGTTCCCGGCTGAACTGGTGCGGCTGATGGACAGGCTGGAGGAAGAAATCCGGGCAGACCGCGTGAGCAGTGAAAGCCGGGCGTCGCATGCGCAGTGCGGGCTGGCGGAGGAGCAACTGGCCCGACCGATGGAACCGGAATACACA‑CCGGCGCGACAAGCTAATCTTTATCACTGCGACCACCGGGGACTGACTATGGCGCTTATAAGCGAAAACGGCAATACGCCAGGGCGCGGGCACTCTGATACATggggtcagcagccaaa                                                                                                                                                                         >  1:394383/1‑288 (MQ=11)

                           gcgaggacGTGGTGTGCCAGGCTGAACTGGTGCGGCTGCTGGACAGTGAGGGGGAAGAAATCCTGGCAGACCGCGTGAGCGGTGAAAGCCGGGCGTGGCTTGCGCAGGGCGGGCTGACGGTGGCGGAAATGGCCAGACAGGTGGAGCCGGAATACACA‑CAGGCGCGAAAAGCGCGTCTTTATCACTGCGAACACCGGGGACTGCCGCTGGCTCTTATCAGCGAAGACGGCAATACGGCGTGGCGCGGGGAGTATGATGAATGGGGCAACCAGCTTAATGAGGAGTACCCGCATCACCTGCa                                                                                                                                                 <  1:57334/294‑1 (MQ=255)

                                  cGTGGTGTTCCCGGCTGAACTGGTGCGGCTGCTGGACAGGCTGGAGGAAGAAATCCGGGCAGACCGCGTGAGCAGTGAAAGCCGGGCGTGGCTTGCGCAGTGCGGGCTGACGGTGGAGCAACTGGCCAGACAGGTGGAGCCGGAATACACA‑CCGGCGCGAAAAGCTCATCTTTATCACTGCGACCACCGGGGACTGCCGCTGGCGCTTATCAGCGAAGACGGCAATACGGCGTGGCGCGGGGAGTATGATGAATGGGGCAACCAGCTTAATGAGGAGAACCCGCATCACCTGCACCAGCCg                                                                                                                                          >  1:131468/1‑301 (MQ=14)

                                                            ggCTGCTGGACAGGCTGGAGGAAGAAATCCGGGCAGACCGCGTGAGCAGTGAAAGCCGGGCGTGGCTTGCGCAGTGCGGGCTGACGGTGGAGCAACTGGCCAGACAGGTGGAGCCGGAATACACA‑CCGGCGCGAAAAGCCCATCTTTATCAATGCGACCACCGGGGCCTGCCGCTGGCGCTTATCAGCGAAACCGCCCATACGGCGTGGCGCGGGGAGTATGATGAACGGGGCAACCAGCTCCAAGAGAAGAACCCGCACGACCTGCACAAGCCGTACCTTCAGCCAGGggcgcagcacg                                                                                                                 >  2:332684/1‑298 (MQ=11)

                                                              gagctgGAAAGGCTGGAGGAAGAAATCCGGGCAGACCGCGTGAGGAGTGAAAGCCGGGCGTGGCTTGCGCAGTGCGGGCTGACGGTGGAGCAACTGGCCAGACAGGTGGAGCCGGAATACACA‑CCGGCGCGAAAAGCTCATCTTTATCACTGCGACCACCGGGGACTGCCGCTGGCGCTTATCAGCGAAGACGGCAATACGGCGTGGCGCGGGGAGTATGATGAATGGGGCAACCAGCTTAATGAGGAGAACCCGCATCACCTGCACCAGCCGTACCGTCTGCCAGGGCAGCAGCatgatg                                                                                                              <  1:483070/299‑1 (MQ=9)

                                                                gctgGACAGGCTGGAGGAAGAAATCCGGGCAGACCGCGTGAGCAGTGAAAGCCGGGCGTGGCTTGCGCAGTGCGGGCTGACGGTGGAGCAACTGGCCAGACAGGTGGAGCCGGAATACACA‑CCGGCGCGAAAAGCTCATCTTTCTCACTGCGACCACCGGGGACGGCCGCTGGCGCTTATCAGCGAAGACGGCAAGACGGCGGGGCGCGGGGGGTATGATGAAGGGGGCAAACAGCTTACTGCGGAGAACGCGCATCACCCGCACCAGCCCTCACGCGTGCCAGGgcaaacgcatcagt                                                                                                              >  2:482953/1‑288 (MQ=11)

                                                                gctgGACAGGCTGGAGGAAGAAATCCGGGCAGACCGCGTGAGCAGTGAAAGCCGGGCGTGGCTTGCGCAGTGCGGGCTGACGGTGGAGCAACTGGCCAGACAGGTGGAGCCGGAATACACA‑CCGGCGCGAAAAGCTCATCTTTATCACTGCGACCACCGGGGACTGCCGCTGGCGCTTATCAGCGAAGACGGCAATACGGCGTGGCGCGGGGAGTATGATGAATGGGGCAACCAGCTTAATGAGGAGAACCCGCATCACCTGCACCAGCCGTACCGTCTGCCAGGGCAGCAGCatgatg                                                                                                              >  1:73076/1‑299 (MQ=14)

                                                                    gACAGGCTGGAGGAAGAAATCCGGGCAGACCGCGTGAGCAGTGAAAGCCGGGCGTGGCTTGCGCAGTGCGGGCTGACGGTGGAGCAACTGGCCAGACAGGTGGAGCCGGAATACACA‑CCGGCGCGAAAAGCTCATCTTTATCACTGCGACCACCGGGGACTGCCGCTGGCGCTTATCAGCGAAGACGGCAATACGGCGTGGCGCGGGGAGTATGATGAATGGGGCAACCAGCTTAATGAGGAGAACCCGCATCACCTGCACCAGCCGTACCGTCTGCCAGGGCAGCAGCAGGATgaggagg                                                                                                        >  1:351050/1‑300 (MQ=12)

                                                                       aGGCTGGAGGAAGAAATCCGGGCAGACCGCGTGAGCAGTGAAAGCCGGGCGTGGCTTGCGCAGTGCGGGCTGACGGTGGAGCAACTGGCCAGACAGGTGGAGCCGGAATACACA‑CCGGCGCGAAAAGCTCATCTTTATCACTGCGACCACCGGGGACTGCCGCTGGCGCTTATCAGCGAAGACGGCAATACGGCGTGGCGCGGGGAGTATGATGAATGGGGCAACCAGCTTAATGAGGAGAACCCGCATCACCTGCACCACCCGTACCGTCTGCCAGGGCAGCAGCATGATGAGGAGTggg                                                                                                     >  1:283072/1‑301 (MQ=12)

                                                                        ggCTGGAGGAAGAAATCCGGGCAGACCGCGTGAGCAGTGAAAGCCGGGCGTGGCTTGCGCAGTGCGGGCTGACGGTGGAGCAACTGGCCAGACAGGTGGAGCCGGAATACACA‑CCGGCGCGAAAAGCTCATCTTTATCACTGCGACCACCGGGGACTGCCGCTGGCGCTTATCAGCGAAGACGGCAATACGGCGGGGCGCGGGGGGTATGATGAATGGGGCAACCAGCTTAATGAGGAGAACCCGCATCACCTGCCCCAGCCGTACCGCCTGCCCGGGCGGCCACCAGACGAGGAGTCggg                                                                                                    >  2:526160/1‑301 (MQ=11)

                                                                          ggggagaaggaagcccGGGCAGACCGGGGGGGCGGGGAAAGCCGGGGGTGGCTTGCGCAGTGCGGGCTGACGGTGGAGCAACTGGCCAGACAGGTGGAGCCGGAATACACA‑CCGGCGCGAAAAGCTCATCTTTATCACTGCGACCACCGGGGACTGCCGCTGGCGCTTATCAGCGAAGACGGCAATACGGCGTGGCGCGGGGAGTATGATGAATGGGGCAACCAGCTTAATGAGGAGAACCCGCATCACCTGCACCAGCCGTACCGTCTGCCAGGGCAGCAGCATGATGAGGAGTCGGGGc                                                                                                  <  2:350961/287‑1 (MQ=11)

                                                                            ggaggaAGAAATCCGGGCAGACCGCGTGAGCAGTGACAGCCGGGCGTGGCTTGCGCAGTGCGGGCTGACGGTGGAGCAACGGGCCAGACAGGTGGAGCCGGAATACACA‑CCGGCGCGAAAAGCTCATCTTTATCACTGCGACCACCGGGGACTGCCGCTGGCGCTTATCAGCGAAGACGGCAATACGGCGTGGCGCGGGGAGTATGATGAATGGGGCAACCAGCTTAATGAGGAGAACCCGCATCACCTGCACCAGCCGTACCGTCTGCCAGGGCAGCAGCATGATGAGGAGTCGGGGCTg                                                                                                <  1:459897/301‑1 (MQ=255)

                                                                                gaagaaATCCGGGCAGACCGCGTGAGCAGTGAAAGCCGGGCGTGGCTTGCGCAGTGCGGGCTGACGGTGGAGCAACTGGCCAGACAGGTGGAGCCGGAATACACA‑CCGGCGCGAAAAGCTCATCTTTATCACTGCGACCACCGGGGACTGCCGCTGGCGCTTATCAGCGAAGACGGCAATACGGCGTGGCGCGGGGAGTATGATGAATGGGGCAACCAGCTTAATGAGGAGAACCCGCATCACCTGCACCAGCCGTACCGTCTGCCAGGGCAGCAGCATGATGAGGAGTCGGGGCTGTACt                                                                                            <  1:394217/301‑1 (MQ=18)

                                                                                            gCAGACCGCGTGAGAAGTGAAAGCCGGGCGTGGCTGGCGCAGGGCGGGCTGACGGTGGAGCAACTGGCCAGACAGGTGGAGCCGGAATACACA‑CCGGCGCGAAAAGCTCATCTTTATCACTGCGACCACCGGGGACTGCCGCTGGCGCTTATCAGCGAAGACGGCAATACGGCGTGGCGCGGGGAGTATGATGAATGGGGCAACCAGCTTAATGAGGAGAACCCGCATCACCTGCACCAGCCGTACCGTCTGCCAGGGCAGCAGCATGATGAGGAGTCGGGGCTGTACTATAACCGTCAcc                                                                                <  1:332770/301‑1 (MQ=255)

                                                                                            ccgtttcccagcgggagggAAAGCCGGGCGGGGGTTGCGCAGTGCTGGCTGACGGTGGAGCAACGGGCCAGCCAGTTGGAGCCGGAATACACC‑CCGGCGCGAAAAGCTAATCGGTATCCCTGCGACCACCGGGGACTGCCGCTGGCGCTTATCAGCGAGGACGGCAATACGGCGTGGCGCGGGGAGTATGATGAATGGGGCAACCAGCTTAATGAGGAGAACCCGCATCACCTGCACCAGCCGTACCGTCTGCCAGGGCAGCAGCATGATGAGGAGTCGGGGCTGTACTATAACCGTCAcc                                                                                <  2:214833/283‑1 (MQ=11)

                                                                                              aGACCGCGTGAGCAGTGAAAGCCGGGCGTGGCTTGCGCAGTGCGGGCTGACGGTGGAGCAACTGGCCAGACAGGTGGAGCCGGAATACACA‑CCGGCGCGAAAAGCTCATCTTTATCACTGCGACCACCGGGGACTGCCGCTGGCGCTTATCAGCGAAGACGGCAATACGGCGTGGCGCGGGGAGTATGATGAATGGGGCAACCAGCTTAATGAGGAGAACCCGCATCACCTGCCCCAGCCGTACCGTCTGCCAggg                                                                                                                           >  1:554499/1‑256 (MQ=12)

                                                                                                         gCAGTGAAAGCCGGGCGTGGCTTGCGCAGTGCGGGCTGACGGTGGAGCAACTGGCCAGACAGGTGGAGCCGGAATACACA‑CCGGCGCGAAAAGCTCATCTTTATCACTGCGACCACCGGGGACTGCCGCTGGCGCTTATCAGCGAAGACGGCAATACGGCGTGGCGCGGGGGGTATGATGAATGGGGAAACCAGCTTAATGAGGAGCACCCGCATCACCTGCACCAGCCGTACCGTCTGCCAGGGCCGCCGCATGATGAGGAGGTGGGGCCGTACTCTTAGCGGCAccagataggaagcgc                                                                   >  1:214892/1‑288 (MQ=11)

                                                                                                              gAAAGCCGGGCGTGGCTTGCGCAGTGCGGGCTGACGGTGGAGCAACTGGCCAGACAGGTGGAGCCGGAATACACA‑CCGGCGCGAAAAGCTCATCTTTATCACTGCGACCACCGGGGACTGCCGCTGGCGCTTATCAGCGAAGACGGCAATACGGCGTGGCGCGGGGAGTATGATGAATGGGGCAACCAGCTTAATGAGGAGAACCCGCATCACCTGCACCAGCCGTACCGTCTGCCAGGGCAGCAGCATGATGAGGAGTCGGGGCTGTACTATAACCGTCACCGGCCCTACGATCCGTTGc                                                              >  1:313212/1‑301 (MQ=255)

                                                                                                              gAAAGCCGGGCGTGGCTTGCGCAGTGCGGGCTGACGGTGGAGCAACTGGCCAGACAGGTGGAGCCGGAATACACA‑CCGGCGCGAAAAGCTCATCTTTATCACTGCGACCACCGGGGACTGCCGCTGGCGCTTATCAGCGAAGACGGCAATACGGCGTGGCGCGGGGAGTATGATGAATGGGGCAACCAGCTTAATGAGGAGAACCCGCATCACCTGCACCAGCCGTACCGTCTGCCAGGGCAGCAGCATGATGAGGAGTCGGGGCTGTACTATAACCGTCACCGGCACTACgggatcgga                                                               >  1:559625/1‑292 (MQ=255)

                                                                                                              gAAAGCCGGGCGTGGCTGGCGGCGGGCGGGCGGACGGTGGAGCAACTGGCCAGACAGGTGGAGCCGGAATACCCA‑CCGGCGCGAAAAGCTCATCTTTATCACTGCGACCACCGGGGACTGCCGCTGGCGCTTATCAGCGAAGACGGCAATACGGCGTGGCGCGGGGAGTATGATGAATGGGGCAACCAGCTTAATGAGGAGAACCCGCATCACCTGCACCAGCCGTACCGTCTGCCAGGGCAGCAGCATGATGAGGAGTCGGGGCTGTACTATAACCGTCACCGGCACTACg                                                                       <  2:559493/292‑1 (MQ=11)

                                                                                                                  ggagggCGGGGATTGCGCAGTGCGGGCTGACGGTGGAGAAACTGGCCAGACAGGTGGAGCCGGAATACACA‑CCGGCGGGAAAAGCTCATCTTTATCACTGAGACCACCGGGGACTGCCGCTGGCGCTTATCAGCGAAGACGGCAATACGGCGTGGCGCGGGGAGTATGATGAATGGGGCAACCAGCTTAATGAGGAGAACCCGCATCACCTGCACCAGCCGTACCGTCTGCCAGGGCAGCAGCATGATGAGGAGTCGGGGCTGTACTATAACCGTCACCGGCACTACGATCCGTTGCAggg                                                          <  1:239999/298‑1 (MQ=11)

                                                                                                                     gggCGTGGCTTGCGCAGTGCGGGCTGACGGTGGAGCAACTGGCCAGACAGGTGGAGCCGGAATACACA‑CCGGCGCGAAAAGCTCATCTTTATCACTGCGACCACCGGGGACTGCCGCTGGCGCTTATCAGCGAAGACGGCAATACGGCGTGGCGCGGGGAGTATGATGAATGGGGCAACCAGCTTAATGAGGAGAACCCGCATCACCTGCACCAGCCGTACCGTCTGCCAGGGCAGCAGCATGATGAGGAGTCGGGGCTGTACTATAACGGTCACCGGCACTCCGATCCGTTGCAGGGGCg                                                       >  1:452930/1‑301 (MQ=255)

                                                                                                                             ggtGCGCAGTGGCGGCCGACGGTGGAGGAACTGGCCAGACAGGTGGAGCCGGAATACACA‑CCGGCGCGAAAAGCTCATCTTTATCACTGCGACCACCGGGGACTGCCGCTGGCGCTTATCAGCGAAGACGGCAATACGGCGTGGCGCGGGGAGTATGATGAATGGGGCAACCAGCTTAATGAGGAGAACCCGCATCACCTGCACCAGCCGTACCGTCTGCCAGGGCAGCAGCATGATGAGGAGTCGGGGCTGTACTATAACCGTCACCGGCACTACGATCCGTTGCAGGGGCGGTATATCa                                               <  1:141079/299‑1 (MQ=255)

                                                                                                                                       gCGGGCTGACGGTGGAGCAACTGGCCAGACAGGTGGAGCCGGAATACACA‑CCGGCGCGAAAAGCTCATCTTTATCACTGCGACCACCGGGGACTGCCGCTGGCGCTTATCAGCGAAGACGGCAATACGGCGTGGCGCGGGGAGTATGATGAATGGGGCAACCAGCTTAATGAGGAGAACCCGCATCACCTGCACCAGCCGTACCGTCTGCCAGGGCAGCAGCATGCTGAGGAGTCGGGGCTGTACTATAACCGTCACCGGCACTACGATCCGTTGCAGGGGCGGTATATCACCCCGGAccc                                     >  1:206753/1‑301 (MQ=255)

                                                                                                                                         gggCTGACGGTGGAGCAACTGGCCAGACAGGTGGAGCCGGAATACACA‑CCGGCGCGAAAAGCTCATCTTTATCACTGCGACCACCGGGGACTGCCGCTGGCGCTTATCAGCGAAGACGGCAATACGGCGTGGCGCGGGGAGTATGATGAATGGGGCAACCAGCTTAATGAGGAGAACCCGCATCACCTGCACCAGCCGTACCGTCTGCCAGGGCAGCAGCATGATGAGGAGTCGGGGCTGTACTATAACCGTCACCGGCACTACGATCCGTTGCAGGGGCGGTATATCACCCCGGACCCgg                                   >  1:565989/1‑300 (MQ=255)

                                                                                                                                              gACGGGGGAGCAACTGGCCAGACAGGTGGAGCCGGAATACACA‑CCGGCGCGAAAAGCTCATCTTTATCACTGCGACCACCGGGGACTGCCGCTGGCGCTTATCAGCGAAGACGGCAATACGGCGTGGCGCGGGGAGTATGATGAATGGGGCAACCAGCTTAATGAGGAGAACCCGCATCACCTGCACCAGCCGTACCGTCTGCCAGGGCAGCAGCATGATGAGGAGTCGGGGCTGTACTATAACCGTCACCGGCACTACGATCCGTTGCAGGGGCGGTATATCACCCCGGACCCGATTggg                              <  1:526286/301‑1 (MQ=255)

                                                                                                                                                  gTGGAGCAACTGGCCAGACAGGTGGGACCGGAATACACA‑CCGGCGCGAAAAGCGCATCTTTATCACTGCGACCACCGGGGACTGCCGCTGGCGCTTATCAGCGAAGACGGCAATACGGCGTGGCGCGGGGAGTATGATGAATGGGGCAACCAGCTTAATGAGGAGAACCCGCATCACCTGCACCAGCCGTACCGTCTGCCAGGGCAGCAGCATGATGAGGAGTCGGGGCTGTACTATAACCGTCACCGGCACTACGATCCGTTGCAGGGGCGGTATATCACCCCGGACCCGATTGGGTTga                          <  1:86910/301‑1 (MQ=255)

                                                                                                                                                        cAACTGGCCAGACAGGTGGGGCCGGAATACACA‑CCGGCGCGAAAAGCTCATCTTTATCACTGCGACCACCGGGGACTGCCGCTGGCGCTTATCAGCGAAGACGGCAATACGGCGTGGCGCGGGGAGTATGATGAATGGGGCAACCAGCTTAATGAGGAGAACCCGCATCACCTGCACCAGCCGTACCGTCTGCCAGGGCAGCAGCATGATgaggag                                                                                                         <  2:86181/216‑1 (MQ=255)

                                                                                                                                                        cAACTGGCCAGACAGGTGGAGCCGGAATACACA‑CCGGCGCGAAAAGCTCATCTTTATCACTGCGACCACCGGGGACTGCCGCTGGCGCTTATCAGCGAAGACGGCAATACGGCGTGGCGCGGGGAGTATGATGAATGGGGCAACCAGCTTAATGAGGAGAACCCGCATCACCTGCACCAGCCGTACCGTCTGCCAGGGCAGCAGCATGATgaggag                                                                                                         >  1:86196/1‑216 (MQ=16)

                                                                                                                                                             ggCCAGACAGGTGGGGCCGGAAGACCCC‑CCGGCGGGAAAAGCTCATCTTTAACACTGCGACCACCGGGGACTGCCGCTGGCGCTTATCAGCGAAGACGGCAATACGGCGTGGCGCGGGGAGTATGATGAATGGGGCAACCAGCTTAATGAGGAGAACCCGCATCACCTGCACCAGCCGTACCGTCTGCCAGGGCAGCAGCATGATGAGGAGTCGGGGCTGTACTATAACCGTCACCGGCACTACGATCCGTTGCAGGGGCGGTATATCACCCCGGACCCGATTGGGTTGAGAGGtggat                 <  2:73063/299‑1 (MQ=255)

                                                                                                                                                             ggCCAGACAGGTGGAGCCGGAATACACA‑CCGGCGCGAAAAGCTCATCTTTATCACTGCGACCACCGGGGACTGCCGCTGGCGCTTATCAGCGAAGACGGCAATACGGCGTGGCGCGGGGAGTATGATGAATGGGGCAACCAGCTTAATGAGGAGAACCCGCATCACCTGCACCAGCCGTACCGTCTGCCAGGGCAGCAGCATGATGAGGAGTCGGGGCTGTAATATAACCGTCACCGGCACTACGACCCGTTGCAGGGGGGGGATATCACCCCGGCCCCGATTGGGTTGTGAGGtgtaggg               >  2:223269/1‑296 (MQ=14)

                                                                                                                                                              gCCAGACAGGTGGAGCCGGAAT‑CACACCCAGGGCGAAAAGCTCATCTTTATCACTGCGACCACCGGGGACGGCCGCTGGGGCGTATCAGGGAAGACTGCAATACGGCGTGGCGCGGGGAGTATGATGAATGGGGCAACCAGCTTAATGAGGAGAACCCGCATCACCTGCACCAGCCGTACCGTCTGCCAGGGCAGCAGCATGATGAGGAGTCGGGGCTGTACTATAACCGTCACCGGCACTACGATCCGTTGCAGGGGCGGTATATCACCCCGGACCCGATTGGGTTGAGAGGtggatgga              <  2:452819/301‑1 (MQ=14)

                                                                                                                                                                cagcaaGGGGGAGCCGGAATACACA‑CCGGCGCGAAAAGCTATTCTTTATCACTGCGACCACGGGGGACGGCCGCTGGCGCTTATCAGCGAGGACGGCAATACGGCGTGGCGCGGGGAGTATGATGAATGGGGCAACCAGCTTAATGAGGAGAACCCGCATCACCTGCACCAGCCGTACCGTCTGCCAGGGCAGCAGCATGATGAGGAGTCGGGGCTGTACTATAACCGTCACCGGCACTACGATCCGTTGCAGGGGCGGTATATCACCCCGGACCCGATTGGGTTGAGAGGTGGATGGAat            <  2:565855/296‑1 (MQ=14)

                                                                                                                                                                      ggTGGAGCCGGAATACACA‑CCGGCGCGAAAAGCTCATCTTTATCACTGCGACCACCGGGGACTGCCGCTGGCGCTTATCAGCGAAGACGGCAATACGGCGTGGCGCGGGGAGTATGATGAATGGGGCAACCAGCTTAATGAGGAGAACCCGCATAACCTGCACCAGCCGTACCGTCTGCCAGGGCAGCAGCATGAGGAGTGTTCGGGGCTGTACTATAAACGTCACCGGCACCACGATCCGTTGCAGGGGCGGTATGTCACACCGGACCCGATTGGGGTGAGAGGtggggggattggcttt      >  2:287729/1‑288 (MQ=14)

                                                                                                                                                                          gAGCCGGAATACACA‑CCGGCGCGAAAAGCTCATCTTTATCACTGCGACCACCGGGGACTGCCGCTGGCGCTTATCAGCGAAGACGGCAATACGGCGTGGCGCGGGGAGTATGATGAATGGGGCAACCAGCTTAATGAGGAGAACCCGCATCACCTGCACCAGCCGTACCGTCTGCCAGGGCAGCAGCATGATGAGGAGTCGGGGCTGTACTATAACCGTCACCGGCACTACGATCCGTTGCAGGGGCGGTATATCACCCCGGACCCGATTTGGTTGAGAGGTGGATGGAATATGTATCAgg  >  1:528965/1‑300 (MQ=255)

CGCTCCAGCAGGAAGGGAGTGAGAACGGCCACGGCGTGGTGTTCCCGGCTGAACTGGTGCGGCTGCTGGACAGGCTGGAGGAAGAAATCCGGGCAGACCGCGTGAGCAGTGAAAGCCGGGCGTGGCTTGCGCAGTGCGGGCTGACGGTGGAGCAACTGGCCAGACAGGTGGAGCCGGAATACACA‑CCGGCGCGAAAAGTTCATTTTTACCACTGCGACCACCGGGGCCTGCCGCTGGCGCTCATCAGCGAAGACGGCAATACGGCGTGGCGCGGGGAGTATGATGAATGGGGCAACCAGCTTAATGAGGAGAACCCGCATCACCTGCACCAGCCGTACCGTCTGCCAGGGCAGCAGCATGATGAGGAGTCGGGGCTGTACTATAACCGTCACCGGCACTACGATCCGTTGCAGGGGCGGTATATCACCCCGGACCCGATTGGGTTGAGAGGTGGATGGAATATGTATCAGT  >  NC_000913/1528977‑1529447

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 9 ≤` `ATCG/ATCG` `< 14 ≤` `ATCG/ATCG` `< 31 ≤` `ATCG/ATCG` `< 38 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`

GATK/CNVnator alignment

N/A