Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A7 F90 I5 R1
|
24 |
61.2 |
1135137 |
88.5% |
1004596 |
286.9 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| RA |
NC_000913 |
4,127,577 |
C→T |
T106T (ACG→ACA) |
yiiX ← |
putative lipid binding hydrolase, DUF830 family protein |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NC_000913 | 4,127,577 | 0 | C | T | 98.2%
| 170.9
/ NA
| 55 | T106T (ACG→ACA) | yiiX | putative lipid binding hydrolase, DUF830 family protein |
| Reads supporting (aligned to +/- strand): ref base C (1/0); new base T (24/30); total (25/30) |
| Fisher's exact test for biased strand distribution p-value = 4.55e-01 |
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 |
TATTACCACGAAAACAGCGGCCATTCTTTGGCGACCGTGGTGAGTTGTGGCGCATCGAAAACGGCTTGTGGCGAGACCACCGTTTCCTCAAGCGGAATATTCTTGCCGTAACGTTCTTTGAGCTTTGCCTGAACTTGTGGGCTGCTCAGGTCGAACTCTTTCAACTTCTGCTGCTCGCCCACGCGCATTCCCAGCGCGTTCTGGTAAACCTTCCACACCACTTCCGAACAGTACTGGCGATCGTCGCTCCATGAGAAGCTGAAATCATACGGTTTACCGAGATAACGTTTTGCCGTTTGCGCCAGTTTTTGCTGTTGTTCAACACTCAGTCCGCCTTCAACGCGGCGAACAACGTATTTGCCCTTTTCACCATGGGCGATCCACTGCTTGAGCGGGGTGTATTTCACCGGGCCGACTGCTTCAAAAACGTAGGGCTTTTTGTTGCGTATCACCAGCATACCGGTGTGGCTATAATCGGTATGGGTCGCCAGTTGGATCGCTTTACTTTGCGATGAGCGAGAGATCTGAAAGATGATGTCGCCGGTTTGTGGCTGCCAGGCAAAGGCAGGTACAGAAACCAGC > NC_000913/4127284‑4127865
|
tATTACCACGAAAACAGCGGCCATTCTTTGGCGACCGTGGTGAGTTGTGGCGCATCGAAAACGGCTTGTGGCGAGACCACCGTTTCCTCAAGCGGAATATTCTTGCCGTAACGTTCTTTGAGCTTTGCCTGAACTTGTGGGCTGCTCAGGTCGAACTCTTTCAACTTCTGCTGCTCGCCCCCGCGCATTCCCAGCGCGTTCTGGTAAACCTTCCACACCACTTCCGACCAGTACTGGCGATCGTCGCCCCATGAGAAGCTGAAATCATACGGTTTACCGAGTTAACGTTTTGCTGTTTgcg > 2:398129/1‑301 (MQ=255)
tACCAGCAAAACAGCGGCCATTCTTTGGCGACCGTGGTGAGTTGTGGCGCATCGAAAACGGGTTGTGGCGAGACCACCGTTTCCTCAAGCGGAATATTCTTGCCGTAACGTTCTTTGAGCTTTGCCTGAACTTGTGGGCTGCTCAGGTCGAACTCTTTCAACTTCTGCTGCTCGCCCACGCGCATTCCCAGCGCGTTCTGGTAAACCTTCCACACCACTTCCGAACAGTACTGGCGATCGTCGCTCCATGAGAAGCTGAAATCATACGGTTTACCGAGATAACGTTTTGCTGTTTGCGcc < 2:566291/300‑1 (MQ=255)
cGAAAACAGCGGCCATTCTTTGGCGACCGTGGTGAGTTGTGGCGCATCGAAAACGGCTTGTGGCGAGACCACCGTTTCCTCAAGCGGAATATTCTTGCCGTAACGTTCTTTGAGCTTTGCCTGAACTTGTGGGCTGCTCAGGTCGAACTCTTTCAACTTCTGCTGCTCGCCCACGCGCATTCCCAGCGCGTTCTGGTAAACCTTCCACACCACTTCCGAACAGTACTGGCGATCGTCGCTCCATGAGAAGCTGAAATCATACGGTTTACCGAGATAACGTTTTGCTGTTTg < 1:264848/291‑1 (MQ=255)
aaaaCAGCGGCCATTCTTTGGCGACCGTGGTGAGTTGTGGCGCATCGAAAACGGCTTGTGGCGAGACCACCGTTTCCTCAAGCGGAATATTCTTGCCGTAACGTTCTTTGAGCTTTGCCTGAACTTGTTGGCTGCTCAGGTCGAACTCTTTCAACTTCTGCTGCTCGCCCACGCGCATTCCCAGCGCGTTCTGGTAAACCTTCCACACCACTTCCGCACAGTCCTGGCGATCGTCGCCCCATGCAACGCCGAAATCCTCCGGTTTTCCGACAAAACGTTTTACTGCTTGCGCCGGGTTTTg > 1:559105/1‑301 (MQ=255)
aaaCCGCGGCCATTCTTTGGCGACCGTGGTGAGTTGTGGCGCATCGAAACCGGCTGGTGGCTACACCACCGTTTCCTCAAGCGGAATATTCTTGCCGTAACGTTCTTTGAGCTTTGCCTGAACTTGTGGGCTGCTCAGGTCGAACTCTTTCAACTTCTGCTGCTCGCCCACGCGCATTCCCAGCGCGTTCTGGTAAACCTTCCACACCACTTCCGAACAGTACTGGTGATCGTCGCTCCATGAGAAGCTGAAATCATACGGTTTACCGAGATAACGTTTTGCTGTTTGCGCCAGTTTTTGc < 1:208019/301‑1 (MQ=255)
gCGGCCATTCTTTGGCGACCGTGGTGAGTTGTGGCGCATCGAAAACGGCTTGTGGCGAGACCACCGTTTCCTCAAGCGGAATATTCTTGCCGTAACGTTCTTTGAGCTTTGCCTGAACTTGTGGGCTGCTCAGGTCGAACTCTTTCAACTTCTGCTGCTCGCCCACGCGCCTTCCCAGCGCGTTCTGGTAAACCTTCCACACCACTTCCGAACAGTACTCGCGCTCGTCGCCCCATGGCCATCTGAAATCATCCGGGTTACCGAGATAACGTTTTCCTGTTTGCGCCAGTTTTTGCtgttg > 2:556658/1‑301 (MQ=255)
ccgCCATTCTTTGGCTACCGTGGTTAGTTGTCGCGCATCTACAACGGCTTGTGGCGAGACCACCGTTTCCTCAAGCGGAATATTCTTGCCGTAACGTTCTTTGAGCTTTGCCTGAACTTGTGGGCTGCTCAGGTCGAACTCTTTCAACTTCTGCTGCTCGCCCACGCGCATTCCCAGCGCGTTCTGGTAAACCTTCCACACCACTTCCGAACAGTACTGGCGATCGTCGCTCCATGAGAAGCTGAAATCATACGGTTTACCGAGATAACGTTTTGCTGTTTGCGCCAGTTTTTGCtgttgt < 1:13116/299‑1 (MQ=255)
gtcctttctttgcgagcagtggtgGGTTGGGGCGCATCGAAAACGGCTTTGGGCGAGACCACCGTTTCCTCAAGCGGAATATTCTTGCCGTAACGTTCTTTGAGCTTTGCCTGAACTTGTGGGCTGCTCAGGTCGAACTCTTTCAACTTCTGCTGCTCGCCCACGCGCATTCCCAGCGCGTTCTGGTAAACCTTCCACACCACTTCCGAACAGTACTGGCGATCGTCGCTCCATGAGAAGCTGAAATCATACGGTTTACCGAGATAACGTTTTGCTGTTTGCGCCAGTTTTTGCTgttgtt < 2:373016/283‑1 (MQ=255)
ggCGACCGTGGTGAGTTGTGGCGCATCGAAAACGGCTTGTGGCGAGACCACCGTTTCCTCAAGCGGAATATTCTTGCCGTAACGTTCTTTGAGCTTTGCCTGAACTTGTGGGCTGCTCAGGTCGAACTCTTTCAACTTCTGCTGCTCGCCCACGCGCATTCCCAGCGCGTTCTGGTAAACCTTCCACACCCCTTCCGAACAGTCCCGGCGATCGTCTCCCCATGCGAAGCTGAAATCCTACGGTTTACCGAGATAACCTTTTGCTGTTTGCGCCAGTTTTTGCCGTTGTTCAACACTCAGt > 2:540927/1‑301 (MQ=255)
ggCGACCGTGGTGAGTTGTGGCGCATCGAAAACGGCTTGTGGCGAGACCACCGTTTCCTCAAGCGGAATATTCTTGCCGTAACGTTCTTTGAGCTTTGCCTGAACTTGTGGGCTGCTCAGGTCGAACTCTTTCAACTTCTGCTGCTCGCCCACGCGCATTCCCAGCGCGTTCTGGTAAACCTTCCACACCACTTCCGAACAGTACTGGCGATCGTCGCTCCATGAGAAGCTGAAATCATACGGTTTACCGAGCTAACGTTTTGCTGTTTGCGCCAGTTTTTGCTGTTGTTCAACACTCAGt > 1:87154/1‑301 (MQ=255)
gACCGTGGTGAGTTGTGGCGCATCGAAAACGGCTTGTGGCGAGACCACCGTTTCCTCAAGCGGAATATTCTTGCCGTAACGTTCTTTGAGCTTTGCCTGAACTTGTGGGCTGCTCAGGTCGAACTCTTTCAACTTCTGCTGCTCGCCCACGCGCATTCCCAGCGCGTTCTGGTAAACCTTCCACACCACTTCCGAACAGTACTGGCGATCGTCGCTCCATGAGAAGCTGAAATCCTACGGTTTACCGTGATAACGTTTTGCTGTTTGCTCCGGTTTTTGCTGTTGTTCAACACTCAGTACg > 2:238747/1‑301 (MQ=255)
gACCGTGGTGAGTTGGGGCGCATCGAAAACGGCTTGTGGCGAGACCACCGTTTCCTCAAGCGGAATATTCTTGCCGTAACGTTCTTTGAGCTTTGCCTGAACTTGTGGGCTGCTCAGGTCGAACTCTTTCAACTTCTGCTGCTCGCCCACGCGCATTCCCAGCGCGTTCTGGTAAACCTTCCACACCACTTCCGAACAGTACTGGCGATCGTCGCTCCATGAGAAGCTGAAATCATACGGTTTACCGAGATAACGTTTTGCTGTTTGCGCCAGTTTTTGCTGTTGTTCAACACTc < 1:238811/295‑1 (MQ=255)
ccGTGGTGAGTTGTGGCGCATCGAAAACGGCTTGTGGCGAGACCACCGTTTCCTCAAGCGGAATATTCTTGCCGTAACGTTCTTTGAGCTTTGCCTGAACTTGTGGGCTGCTCAGGTCGAACTCTTTCAACTTCTGCTGCTCGCCCACGCGCATTCCCAGCGCGTCCTGGTAAACCTTCCACCCCACTTCCGCACAGTACTGGCGACCGTCGCTCCATGAGAACCTGAAATCATCCGGTTTACCCAGCACACATTTTCCTGTTTGTTCCAGGTTTTGCTTTTGTTTCACCCTCaacccccc > 2:337322/1‑294 (MQ=255)
aattGGGGCCCCTCGAAACCTGCTGGTTGCTAGCCGCCCGTTTCCGCAAGCGGGAAGTTGTTGCCAGAACGTCCTTTGAGCTTTGCCTGAACTTGTGGGCTGCTCAGGTCGACCTCTTTCAACTTCTGCTGCTCGCCCACTGGCATTCCCAGCGCGTTCTGATAAGCCTTCCACACCACTTCCGAACAGTACTGGCGATCGTCGCTCCATGAGAAGCTGAAATCATACGGTTTACCGAGATAACGTTTTGCTGTTTGCGCCAGTTTTTGCTGTTGTTCAACACTCAGTCCGCCTTCAAcgc < 2:229299/299‑1 (MQ=255)
gcATCGAAAACGGCTTGTGGCGAGACCACCGTTTCCTCAAGCGGAATATTCTTGCCGTAACGTTCTTTGAGCTTTGCCTGAACCTGTGGGCTGCTCAGGTCGAACTCTTTCAACTTCTGCTGCTCGCCCACGCGCATTCCCAGCGCGTTCTGGTAAACCTTCCACACCACTTCCGAACAGTACTGGCGCTCGTCGCTCCATGAGAAGCTGACACCATACGGTTTACCGAGATTACGTTTTGCCGTTTGCGCCCGTCTTTGCTGTTGGTCAACACCCAGTCCGCCTTCTCCGCGGCGaccc > 2:227600/1‑297 (MQ=255)
gcATCGAAAACGGCTGGTAGCGAGACCACCGTTTCCTCAAGCGGAATATTCTTGCCGTAACGTTCTTTGAGCTTTGCCTGAACTTGTGGGCTGCTCAGGTCGAACTCTTTCAACTTCTGCTGCTCGCCCACGCGCATTCCCAGCGCGTTCTGGTAAACCTTCCACACCACTTCCGAACAGTACTGGCGATCGTCGCTCCATGAGAAGCTGAAATCATACGGTTTACCGAGATAACGTTTTGCTGTTTGCGCCAGTTTTTGCTGTTGTTCAACACTCAGTCCGCCTTCAACGCGGCGaacaa < 1:36868/301‑1 (MQ=255)
cATCGAAAACGGCTTGTGGCGAGACCGCCGTTTCCTCAAGCGGAATATTCTTGCCGTAACGTTCTTTGAGCTTTGCCTGAACTTGTGGGCTGCTCAGGTCGAACTCTTTCAACTTCTGCTGCTCGCCCACGCGCATTCCCAGCGCGTTCTGGTAAACCTTCCACACCACTTCCGAACAGTACTGGCGATCGTCGCTCCATGAGAAGCTGAAATCATACGGTTTACCGAGATAACGTTTTGCTGTTTGCGCCAGTTTTTGCTGTTGTTCAACACTCAGTCCGCCTTCAACGCGGCGaacaac < 1:398222/301‑1 (MQ=255)
gaaaggtttGTGGCGTAACCACCGTTGCCTAGAGCGGAATATTCTTGCCGTAACGTTCTTTGCGCTATGCCGGAACTTGTGGGCTGCGCAGGTCGAACTCTTTCAACTTCTGCGGCTCGCCCACGCGCAGTCCCAGCGCGTTCTGGTCAACCTTCCACACCACTTCCGAACAGTACTGGCGATCGTCGCTCCATGAGAAGCTGAAATCATACGGTTTACCGAGATAACGTGGTGCTGTTTGCGCCAGTTTTTGCTGTTGTTCAACACTCAGTCCGCCTTTAACGCGGCGAACAACGTAttt < 2:558973/294‑1 (MQ=255)
cTTGTGGCGAGACCACCGTTTCCTCAAGCGGAATATTCTTGCCGTAACGTTCTTTGAGCTTTGCCTGAACTTGTGGGCTGCTCAGGTCGAACTCTTTCAACTTCTGCTGCTCGCCCACGCGCATTCCCAGCGCGTTCTGGTAAACCTTCCACACCACTTCCGAACAGTACTGGCGATCGTCGCTCCATGAGAAGCTGAAATCATACGTTTTACAGAGATAAAGTTTTGATGTTTGCTCCAGTTTTTGCTGTTGTTCCAACCTCATTCCGCCTTCCACGCGGCGAACCAAGTATTTCCCCtt > 1:13179/1‑301 (MQ=255)
ttgtgCGAGCCCACCTTTTCCTCCAGCGGTATATTCTTGCCGTTACGTTCTTTGAGCTTTGCCTGAACTTGGGGGCTGCTCAGGTCGAACTCTTTCAACTTCTGCTGCTCGCCCACGCGCATTCCCAGCGCGTTCTGGTAAACCTTCCACACCACTTCCGAACAGTACTGGCGATCGTCGCTCCATGAGAAGCTGAAATCATACGGTTTACCGAGATAACGTTTTGCTGTTTGCGCCAGTTTTTGCTGTTGTTCAACACTCAGTCCGCCTTCAACGCGGCGAACAACGTATTTGCCCttt < 2:87139/296‑1 (MQ=255)
tgggagccacccgtttcgtgagcggggatatCCTTGCCGGAACGGTGTTTGAGGTTTGCCTGAACCTGTGGGTTGCTCAGGTCGGACTCTTTCAACTTCTGCTGCTCGCCCACGAGCATTGCCAGCGCGTTCTGGTAAACCTTCCACACCACTTCCGAACAGTACTGGCGATCGTCGCTCCATGAGAAGCTGAAATCATACGGTTTACCGAGATAACGTTTTGCTGTTTGCGCCAGTTTTTGCTGTTGTTCAACACTCAGTCCGCCTTCAACGCGGCGAACAACGTATTTGCCCTTTTCa < 1:227664/273‑1 (MQ=255)
ccaccGTTTCCTCAAGCGGAATATTCTTGCCGTAACGTTCTTTGAGCTTTGCCTGAACTTGTGGGCTGCTCAGGTCGAACTCTTTCAACTTCTGCTGCTCGCCCACGCGCATTCCCAGCGCGTTCTGGTAAACCTTCCACACCACTTCCGAACAGTACTGGCGATCGTCGCTCCATGAGAAGCTGAAATCATACGGTTTACCGAGATAACGTTTTGCTGTTTGCGCCAGTTTTTGCTGTTGTTCAac > 1:561492/1‑247 (MQ=255)
cTCAAGCGGAATATTCTTGCCGTAACGTTCTTTGAGCTTTGCCTGAACTTGTGGGCTGCTCAGGTCGAACTCTTTCAACTTCTGCTGCTCGCCCACGCGCATTCCCAGCGCGTTCTGGTAAACCTTCCACACCACTTCCGAACAGTACTGGCGATCGTCGCTCCATGAGAAGCTGAAATCATACGGTTTACCGAGATAACGTTTTGCTGTTTGCGCCAGTTTTTGCTGTTGTTCAACACTCAGTCCGCCTTCAACGCGGCGAACAACGTATTTGCCCTTTTCACCATGGGCGCTCCACTGc > 1:473408/1‑301 (MQ=255)
gAATATTATTGCCGTAACGTTCTTTGCGTTTTGCCGGAACTTGTGGGCTGCTCAGGTCGACCTCTTTCAACTTCTGCTGCTCGCCCACGCGCATTCCCAGCGCGTTCTGGTCAACCTTCCACACCACTTCCGAACAGTACTGGCTATCGTCGCTCCATGAGAAGCTGAAATCATACGGTTTACCGAGATAACGTTTTGCTGTTTGCGCCAGTTTTTGCTGTTGTTCAACACTCAGTCCGCCTTCAACGCGGCGAACAACGTATTTGCCCTTTTCACCATGGGCGATCCACTGCTTGAGCgg < 1:423493/301‑1 (MQ=255)
tAACGTTCTTTGAGCTTTGCCTGAACTTGTGGGCTGCTCAGGTCGAACTCTTTCAACTTCTGCTGCTCGCCCACGCGCATTCCCAGCGCGTTCTGGTAAACCTTCCACACCACTTCCGAACAGTACTGGCGATCGTCGCTCCATGAGAAGCTGAAATCATACGGTTTACCGAGATAACGCTTTGCTGTTTGCGCCAGTTTTTGCTGTTGTTCAACACTCAGTCCGCCTTAAACGCGGCGAACCACGTATTTGCCCTTTTCACCATGGGCg > 1:315609/1‑270 (MQ=255)
atcGTTCTGTGGGCTTGTCCGTAACTGGTGGGCTCCTCAGGTCAAACTCCGTACACCTCTGCTGCTCGGCCACGAGCATTCCCCGCGCGCTCTGGTAAACCTGCCACACCACTTCCGAAACGTACTGGCGATCGTGTCTCCATGAGAAGCTGAAATCATACGGTTTACCGAGATAACGTTTTGCTGTTTGCGCCAGTTTTTGCTGTTGTTCAACACTCAGTCCGCCTTCAACGCGGCGAACAACGTATTTGCCCTTTTCACCATGGGCGATCCACTGCTTGAGCGGGGTGTATTTCACCg < 2:8377/298‑1 (MQ=255)
gtgctggatgcaCTTTTGGGCTACGCAAGTCGTACTCTTTCAACTTACTCTGCTCGCACCCGCAGATTCACTGAGCGTTCTTGTACTCCTTCCACCCCCCTTCCGAACAGTACTGGAGATCGTCGCTCCATGAGAATCTGAAATCTTACGGATTACCGGAATAACGTTTTGCTGTTTGAGCCAGGTTTTGCTGTTGTTCAACACTCAGTCCGCCTTCAACGCGGCGAACAACGTATTTGCCCTTTTCACCATGGGCGATCCACTGCTTGAGCGGGGTGTATTTCACCGGGCCGACTGCTTc < 2:13179/290‑1 (MQ=255)
cgCCCGAGCTTGGTGGCGGCGCAGGTCGTACTCTTTCAACTTCTGCTGCTCGCCCACGCGCATTCCCAGCGCGTTCTGCTAAACCTTCCACACCACTTCCGAACAGTACTGGCGAGCGTCGCTCCATGAGCAGCTGAAATCATACGGTTTACCGAGATAACGTTTTGCTGTTTGCGCCAGTTTTTGCTGTTGTTCAACACTCAGTCCGCCTTCAACGCGGCGAACAACGTATTTGCCCTTTTCACCATGGGCGATCCACTGCTTGAGCGGGGTGTATTTCACCGGGCCGACTGCTTCaaa < 2:275911/299‑1 (MQ=255)
tgctCAGGTCGAACTCTTTCAACTTCTGCTGCTCGCCCACGCGCATTCCCAGCGCGTTCTGGTAAACCTTCCACACCACTTCCGAACAGTACTGGCGATCGTCGCTCCATGAGAAGCTGAAATCATACGGTTTACCGAGATAACGTGTTGCTGTTTGCGCCAGTTTTTGCTGTTGTTCAACACTCAGTCCGCCTTCAACGCGGCGAACAACGTATTTGCCCTTTTCACCATGGGCGATCCCCTGCGTGAGCGGGGTGTATTTCACCGGGCCGACTGCTTCAAAAACGTAGGTCTTTtggtt > 2:251519/1‑301 (MQ=255)
gctCAGGTCGACCTCTTTCAACTTCTGCTGCCCGCCCCCGCGCATTCCCAGCGCGTTCTGGTAAACCTTCCCCACCACTTCCGAACAGGACTGGCGATCGTCGCTCCATGAGAAGCTGAAATCATACGGTTTACCGAGATAACGTTTTGCTGTTTGCGCCAGTTTTTGCTGTTGTTCAACACTCAGTCCGCCTTCAACGCGGCGAACAACGTATTTGCCCTTTTCACCATGGGCGATCCACTGCTTGAGCGGGGTGTATTTCACCGGGCCGACTGCTTCAAAAACGTAGGGCTTTttgtt < 2:473294/300‑1 (MQ=255)
ctCAGGTCGAACTCTTTCAACTTCTGCTGCTCGCCCACGCGCATTCCCAGCGCGTTCTGGTAAACCTTCCACACCACTTCCGAACAGTACTGGCGATCGTCGCTCCATGAGACGCTGAAATCATACGGTTTACCGAGATAACGTTTTGCTGTTTGCGCCAGTTTTTGCTGTTGTTCAACACTCAGTCCGCCTTCAACGCGTCGAACAACGTATTTGCCCTTTTCACCATGGGCGATCCACTGCTTGAGCGGGGTGGTTTTCACAGGGCCGACTGCGTCAAAAACGCAGGGCTTTTTGTTGc > 2:351203/1‑301 (MQ=255)
aaCTCTTTCAACTTCTGCTGCTCGCCCACGCGCATTCCCAGCGCGTTCTGGTAAACCTTCCACACCACTTCCGAACAGTACTGGCGATCGTCGCTCCATGAGAAGCTGAAATCATACGGTTTAACGAGATACCGTTTTGCTGTTTGCGCCAGTTTTTGCTGTTGTTCAACACTCACTCCGCCTTCACCGCGGCGAACAACGTATTTGCCCTTTTAACCATGGGCGCACCAATGCGTGAGCGGGGTGTATTGCACCGGGCCGACTGCTTACAAAACGCAGGGCGTTTTGTTGCGttacaac > 1:300965/1‑294 (MQ=255)
aCTTCTTCTGCTCGCCCCCGCGCATTCCCAGCGCGTTCTGGTAAACCTTCCACACCACTTCCGAACAGTACTGGCGATCGTCGCTCCATGAGAAGCTGAAATCATACGGTTTACCGAGATAACGTTTTGCTGTTTGCGCCAGTTTTTGCTGTTGTTCAACACTCAGTCCGCCTTCAACGCGGCGAACAACGTATTTGCCCTTTTCACCATGGGCGATCCACTGCTTGAGCGGGGTGTATTTCACCGGGCCGACTGCTTCAAAAACGTAGGGCTTTTTGTTGCGTATCACCAGc < 1:454107/293‑1 (MQ=255)
aCTTCTGCTGCTCGCCCACGCGCATTCCCAGCGCGTTCTGGTAAACCTTCCACACCACTTCCGAACAGTACTGGCGATCGTCGCTCCATGAGAAGCTGAAATCCTACGGTTTACCGAGATAACGTTTTGCTGTTTGCGCCAGTTTTTGCTGTTGTTCAACACTCAGTCCGCCTTCAACGCGGCGAACAACGTATTTGCCCTTTTCACCATGGGCGATCCACTGCTTGAGCGGGGTTTATTTCCCCGGGCCGACTGCTTCAAAAACGTAGGGCTTTTGTTTGTGTATCACCAGCagctcggc > 2:453996/1‑294 (MQ=255)
ctCCCCCCCGCGCATTCCCAGCGCGTTCTGGTAAACCTTCCACACCACTTCCGAACAGTACTGGCGAACGTCGCTCCATGAGAAGCTGAAATCATACGGTTTACCGAGATAACGTTTTGCTGTTTGCGCCAGTTTTTGCTGTTGTTCAACACTCAGTCCGCCTTCAACGCGGCGAACAACGTATTTGCCCTTTTCACCATGGGCGATCCACTGCTTGAGCGGGGTGTATTTCACCGGGCCGACTGCt < 1:146714/247‑1 (MQ=255)
tCGCCCACGCGCATTCCCAGCGCGTTCTGGTAAACCTTCCACACCACTTCCGAACAGTACTGGCGTTCGTCGCTCCATGAGAAGCTGAAATCATACGGTTTACCGAGATAACGTTTTGCTGTTTGCGCCAGTTTTTGCTGTTGTTCAACACTCAGTACGCCTTCAACGCCGCGAACAACGTATTTGCCCTTTTCACCATGCGCGTTCACCTGCTTGAGCGGGGTGTCTTTCACCGGGCCGACTGCTTCCAAAACGTAGGGATGTTTTTTGCGTTTCCCCAGCATACCGGTGTGGTtatact > 1:341585/1‑299 (MQ=255)
tCGCCCACGCGCATTCCCAGCGCGTTCTGGTAAACCTTCCACACCACTTCCGAACAGTACTGGCGATCGTCGCTCCATGAGAAGCTGAAATCATACGGTTTACCGAGATAACGTTTTGCTGTTTGCGCCAGTTTTTGCTGTTGTTCAACACTCAGTCCGCCTTCAACGCGGCGAACAACGTATTTGCCCTTTTCACCATGGGCGATCCACTGCTTGAGCGGGGTGTATTTCACCGGGCCGACTGCTTCAAAAACGTAg > 1:353821/1‑258 (MQ=255)
cgacaacgtacattaccagggagtcagagTAAACGTTCCACACCAATACCCACCACTACTAGGAATCGATGCTTCATGTGAAGCTGAAGACATACGTTTATCCGGAATAACGGTTTGCTGGTTGCGCAAGTGTTGGCTGTTGTTCAACACTCAGTCCGCCTTCAACGCGGCGAACACCGTATTTGCCCTTTTCACCATGGGCGATCCACTGCTTGAGCGGGGTGTATTTCACCGGGCCGACTGCTTCAAAAACGTAGGGCTTTTTGTTGCGTATCACCAGCATACCGGTGTGGCTATAATc < 2:52646/273‑1 (MQ=255)
cacaCGCGTTCCCAGCGCGTTCTGGTAACCCTTCCACACCACTTCCGCACAGTACTGGCGATTGTCGCTCCATTAGACGCTGAGATCATACGGTTTACCGAGATAACGTTTTGCTGTTTGCTCCAGTTTTTGCTGTTGTTCAACACTCATTCCGCCTTCAACGCGGCGAACAACGTATTTGCCCTTTTCACCATGGGCGATCCACTGCTTGAGCGGGGTGTATTTCACCGGGCCGACTGCTTCAAAAACGTAGGGCTTTTTGTTGCGTa < 1:321986/269‑1 (MQ=255)
cACGCGCATTCCCAGCGCGTTCTGGTAAACCTTCCACACCACTTCCGAACAGTACTGGCGATCGTCGCTCCATGAGAAGCTGAAATCATACGGTTTACCGAGATAACGTTTTGCTGTTTGCGCCAGTTTTTGCTGTTGTTCAACACTCAGTCCGCCTTCAACGCGGCGAACAACGTATTTGcc < 1:551886/183‑1 (MQ=255)
cACGCGCATTCCCAGCGCGTTCTGGTAAACCTTCCACACCACTTCCGAACAGTACTGGCGATCGTCGCTCCATGAGAAGCTGAAATCATACGGTTTACCGAGATAACGTTTTGCTGTTTGCGCCAGTTTTTGCTGTTGTTCAACACTCAGTCCGCCTTCAACGCGGCGAACAACGTATTTGcc > 2:551756/1‑183 (MQ=255)
cgcgCATTCCCAGCGCTTTCTGGTAAAGCTTCCCACCCCCTACCGAACAGAACTGGCGATCGTCGCTCCATGAGAAGCTGAACTCATACGGTTTACCGAGATAACGTTTTGCTGTTTGCGCCAGTTTTTGCTGTTGTTAAACACTCAGTCCGCCTTCAACGCGGCGAACAGCGTATTTGCCCTTTTCACCATGGGCGATCCACTGCTTGAGCGGGGTGTATTTCACCGGGCCGACTGCTTCAAAAACGTAGGGCTTTTTGTTGCGTATCACCAGCATACCGGTGTGGCTATAATCGGTATg < 2:34059/301‑1 (MQ=255)
gcATTCCCAGCGCGTTCTGGTAAACCTTCCACACCACTTCCGAACAGTACTGGCGATCGTCGCTCCATGAGAAGCTGAAATCATACGGTTTACCGAGATAACGTTTTGCTGTTTGCGCCAGTTTTTGCTGTTGTTCAACACTCAGTCCGCCTTCAACGCGGCGAACAACGTATTTGCCCTTTTCACCATGGGCGATCCCCTGCTTGAGCGGGGTGTATGTCACCGGGCCGCCTGCTTCAAAAACGTAGGGCGTTGTGTTGCGTATCACTCGAATACCGGGGTggttttctacgctattggg > 2:526093/1‑284 (MQ=255)
tCCCAGCGCGTTCTGGTAAACCTTCCACACCACTTCCGAACAGTACTGGCGATCGTCGCTCCATGAGAAGCTGAAATCATACGGTTTACCGAGATAACGTTTTGCTGTTTGCGCCAGTTTTTGCTGTTGTTCAACACTCAGTCCGCCTTCAACGCGGCGAACAACGTATTTGCCCTTTTCACCATGGGCGATCCACTGCTTGAGCGGGGTGTATTTCACCGGGCCGACTGCTTCACAAACGTAGGGCTTTTTGTTGCGTAGCACCAGCATACCGGTGTGGCTATAATCGGTATGGGTCGcc > 2:110787/1‑301 (MQ=255)
tGGCGATCGTCGCTCCATGAGAAGCTGAAATCATACGGTTTACCGAGATAACGTTTTGCTGTTTGCGCCAGTTTTTGCTGTTGTTCAACACTCAGTCCGCCTTCAACGCGGCGAACAACGTATTTGCCCTTTTCACCATGGGCGATCCACTGCTTGAGCGGGGTGTATTTCACCGGGCCGACTGCTTCAAAAACGTAg > 2:5012/1‑198 (MQ=255)
tGGCGATCGTCGCTCCATGAGAAGCTGAAATCATACGGTTTACCGAGATAACGTTTTGCTGTTTGCGCCAGTTTTTGCTGTTGTTCAACACTCAGTCCGCCTTCAACGCGGCGAACAACGTATTTGCCCTTTTCACCATGGGCGATCCACTGCTTGAGCGGGGTGTATTTCACCGGGCCGACTGCTTCAAAAACGTAg < 1:5012/198‑1 (MQ=255)
gCTCCATGAGAAGCTGAAATCATACGGTTTACCGAGATAACGTTTTGCTGTTTGCGCCAGTTTTTGCTGTTGTTCAACACTCAGTCCGCCTTCAACGCGGCGAACAACGTATTTGCCCTTTTCACCATGGGCGATCCACTGCTTGAGCGGGGTGTATTTCACCGGGCCGACTGCTTCAAAAACGTAGGGCTTTTTGTTGCGTATCAACAGCATACCGGTGTGGCTATAATCGGTATGGGTCGCCAGTTGGATCGCTTTACTTTGCGATGCGCGAGCGATCTGAAAgaagggtttgcaggat > 2:557661/1‑287 (MQ=255)
gAAATCATACGGTTTACCGAGATAACGTTTTGCTGTTTGCGCCAGTTTTTGCTGTTGTTCAACACTCAGTCCGCCTTCAACGCGGCGAACAACGTATTTGCCCTTTTCACCATGGGCGATCCACTGCTTGAGCGGGGTGTATTTCACCGGGCCGACTGCTTCAAAAACGTAGGGCTTTTTGTTGCGTATCACCAGCATACCGGTGTGGCTATAATCGGTATGGGTCGCCAGTTGGATCGCTTTACTTTGCGATGAGCGAGAGATCTGAAAGATGATGTCGCCGGTTTGTGGCTGCCAgg < 1:251589/299‑1 (MQ=255)
gccgccgtgtgctcttccgctctcGTTTTGCTTTTTGCGCCAGTTTTTGCTGTTGTTAAACACTCCGTCCGCCTTCAACGCGGCGAACAACGTATTTGCCCTTTTCACCATGGGCGATCCACTGCTTGAGCGGGGTGTATTTCACCGGGCCGACTGCTTCAAAAACGTAGGGCTTTTTGTTGCGTATCACCAGCATACCGGTGTGGCTATAATCGGTATGGGTCGCCAGTTGGATCGCTTTACTTTGCGATGAGCGAGAGATCTGAAAGATGATGTCGCCGGTTTGTGGCTGCCAGGCaa < 1:220846/277‑1 (MQ=255)
aacattccgTTTTCCGGGAGAACCGTTTGCTGTTTGCGCCAGTTTTTTCTGTTGTTCAACACTCAGTCCGCCTTCAACGCGGCGAACAACGTATTTGCCCTTTTCACCATGGGCGATCCACTGCTTGGGCGGGGTGTATTTCACCGGGCCGACTGCTTCAAAAACGTAGGGCTTTTTGTTGCGTATCACCAGCATACCGGTGTGGCTATAATCGGTATGGGTCGCCAGTTGGATCGCTTTACTTTGCGATGAGCGAGAGATCTGAAAGATGATGTCGCCGGTTTGTGGCTGCCAGGCAAAg < 1:198507/293‑1 (MQ=255)
aTACGGTTTACCGAGATAACGTTTTGCTGTTTGCGCCAGTTTTTGCTGTTGTTCAACACTCAGTCCGCCTTAAACGCGGCGAACAACGTATTTGCCCTTTTCCCCATGGGCGATCCACTGCTTGAGCGGGGTGGATTTCACCGGGCCGACTGCTTCAAAAACGTAGGGCTTTTTGTTGCGTATCACCAGCATACCGGTGTGGCTATAATCGGTATGGGTCGCCAGTTGGATCGCTTTACTTTGCGATGAGCGAGAGATCTGAAAGATGATGTCGCCGGTTTGTGGCTGCCAGGCAAAGGCa < 1:556789/301‑1 (MQ=255)
ccGAGATAACGTTTTGCTGTTTGCGCCAGTTTTTGCTGTTGTTCAACACTCAGTCCGCCTTCAACGCGGCGAACAACGTATTTGCCCTTTTCACCATGGGCGATCCACTGCTTGAGCGGGGTGTATTTCACCGGGCCGACTGCTTCAAAAACGTAGGGCTTTTTGTTGCGTATCACCAGCATACCGGTGTGGCTATAATCGGTATGGGTCGCCAGTTGGATCGCTTTACTTTGCGATGAGCGAGAGATCTGAAAGATGATGTCGCCGGTTTGTGGTTGCCAGGCAAAGGCAGGTAGAGaa > 1:446155/1‑300 (MQ=255)
gagaTTATGTTTTGCTTTTTGTGCCAGTTTTTGCCTTTGTTAAACACTCATTCCGCCTTAAACGCGGCGAACAACTTATTTGCCCTTTTCACCATGGGCTATCCACTGCTTGAGCGGGGTGTATTTCCCCGGGCCGACTGCTTCAAAAACGTAGGGCTTTTTGTTGCGTATCACCAGCATACCGGTGTGGCTATAATCGGTATGGGTCGCCAGTTGGATCGCTTTACTTTGCGATGAGCGAGAGATCTGAAAGATGATGTCGCCGGTTTGTGGCTGCCAGGCAAAGGCAGGTACAGAAAcc < 1:351292/301‑1 (MQ=255)
aTAACGTTTTGCTGTTTGCGCCAGTTTTTGCTGTTGTTCAACACTCAGTCCGCCTTCAACGCGGCGAACAACGTATTTGCCCTTTTCACCATGGGCGATCCACTGCTTGAGCGGGGTGTATTTCACCGGGCCGACTGCTTCAAAAACGTAGGGCTTTTTGTTGCGTATCACCAGCATACCGGTGTGGCTATAATCGGTATGGGTCTCCAGTTGGATCGCTTTACTTTGCGATGAGCGAGAGATCTGAAAGAAGATGTCGCCGGTTTGTGGCTGCCAGGCAAAGGCAGGTACAGAAACcagc < 1:557792/301‑1 (MQ=255)
cGTTTTGCTGTTTGCGCCAGTTTTTGCTGTTGTTCAACACTCAGTCCGCCTTCAACGCGGCGAACAACGTATTTGCCCTTTTCACCATGGGCGATCCACTGCTTGAGCGGGGTGTATTTCACCGGGCCGACTGCTTCAAAAACGTAGGGCTTTTTGTTGCGTATCGCCAGCATCCCGGTGTGGCTATTATCGGTATGGGTCGCCAGTTGGAGCGCTTTTCTTTGCGATGAGGGAGAGCTCTGAAAGATGATGTGGCTGGTTTGGGGCTGCCAGGCag > 2:220787/1‑276 (MQ=255)
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TATTACCACGAAAACAGCGGCCATTCTTTGGCGACCGTGGTGAGTTGTGGCGCATCGAAAACGGCTTGTGGCGAGACCACCGTTTCCTCAAGCGGAATATTCTTGCCGTAACGTTCTTTGAGCTTTGCCTGAACTTGTGGGCTGCTCAGGTCGAACTCTTTCAACTTCTGCTGCTCGCCCACGCGCATTCCCAGCGCGTTCTGGTAAACCTTCCACACCACTTCCGAACAGTACTGGCGATCGTCGCTCCATGAGAAGCTGAAATCATACGGTTTACCGAGATAACGTTTTGCCGTTTGCGCCAGTTTTTGCTGTTGTTCAACACTCAGTCCGCCTTCAACGCGGCGAACAACGTATTTGCCCTTTTCACCATGGGCGATCCACTGCTTGAGCGGGGTGTATTTCACCGGGCCGACTGCTTCAAAAACGTAGGGCTTTTTGTTGCGTATCACCAGCATACCGGTGTGGCTATAATCGGTATGGGTCGCCAGTTGGATCGCTTTACTTTGCGATGAGCGAGAGATCTGAAAGATGATGTCGCCGGTTTGTGGCTGCCAGGCAAAGGCAGGTACAGAAACCAGC > NC_000913/4127284‑4127865
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| Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 9 ≤ ATCG/ATCG < 11 ≤ ATCG/ATCG < 28 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
N/A
