Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A8 F91 I3 R1
|
11 |
97.5 |
1793558 |
89.6% |
1607027 |
287.0 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| MC JC |
NC_000913 |
3,816,605 |
Δ103 bp |
|
[yicC] |
[yicC] |
|
| | | | seq id |
start |
end |
size |
←reads |
reads→ |
gene |
description |
|---|
| * |
* |
÷ |
NC_000913 |
3816605 |
3816707 |
103 |
101 [0] |
[0] 101 |
[yicC] |
[yicC] |
|
| |
seq id |
position |
reads (cov) |
reads (cov) |
score |
skew |
freq |
annotation |
gene |
product |
| * |
? |
NC_000913 |
= 3816604 | 0 (0.000) | 101 (1.060) |
89/560 |
0.0 |
100% |
intergenic (‑55/‑72) |
rph/yicC |
ribonuclease PH (defective);enzyme; Degradation of RNA; RNase PH/UPF0701 family protein |
| ? | NC_000913 |
3816708 = |
0 (0.000) | coding (33/864 nt) |
yicC |
UPF0701 family protein |
GATK/CNVnator alignment
N/A
