Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A2 F27 I0 R1
|
83 |
86.1 |
2053078 |
89.1% |
1829292 |
215.9 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
freq |
annotation |
gene |
description |
| RA |
NC_000913 |
4,378,891 |
C→A |
17.0% |
A19S (GCT→TCT) |
ampC ← |
penicillin‑binding protein, beta‑lactamase, intrinsically weak |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NC_000913 | 4,378,891 | 0 | C | A | 17.0%
| 137.1
/ 4.7
| 54 | A19S (GCT→TCT) | ampC | penicillin‑binding protein, beta‑lactamase, intrinsically weak |
| Reads supporting (aligned to +/- strand): ref base C (32/12); new base A (2/8); total (34/20) |
| Fisher's exact test for biased strand distribution p-value = 3.20e-03 |
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.67e-01 |
CCTCGAGCAATAGCGTCGCCACCAAGCACGCCAGTAAATGTTTTGCTGACCGAACCTAACTCAAACAACGTTTGCTGTGTGACGGGCTGCTTTTTGGCGATGTCCGCATAGCCCCAGGTAAAGTAATAAGGTTTACCCTGAT‑‑AAATTACCGCCACCGCCATACCCGGGATCTTTTGTTGCTCTATAAGCGGGGTAATTGTGCGATGCACAATATCGTTGATTTGTTGAGGGGCAGCAAATGTGGAGCAAGAGGCGGTAA‑TTAATAAGGCGCAGAGCGTCGTTTTGAACATAGGGTCTGGTTTCC‑ATACAAAACGGCCCGCCATAGGC‑GGG‑CC‑GGATTTACATTGGCGATGCGTTAGA‑TTGTAACGACACCAATCAGCGTGAC‑AACTGTCAGGATAGC‑AGCCAGACCGTAGAAAA‑CCCATTTGCCCGCAGGTACGTGGATTTTCAGATCGTGCATCGCGTGGTGCATACG > NC_000913/4378656‑4379124
|
ccTCGAGCAATAGCGTCGCCACCAAGCACGCCAGTAAATGTTTTGCTGACCGAACCTAACTCAAACAACGTTTGCTGTGTGACGGGCTGCTTTTTGGCGATGTCCGCATAGCCCCAGGTAAAGTACTAAGGTTTACCCTGAT‑‑AAATTACCGCCACCGCCCTACCCGGGATCTTTTGTTGTCCTATAAGCGGGGTAATTGTGCGATGAACAAAATGTTTTATTTGTTGAGGGGCCGCaaa > 1:486529/1‑239 (MQ=255)
aTAGCGTCGCCACCAAGCACGCCAGTAAATGTTTTGCTGACCGAACCTAATTCAAACAACGTTTGCTGTGTGACGGGCTGCTTTTTGGCGATGTCCGCATAGCCCCAGGTAAAGTAATAAGGTTTACCCTGAT‑‑AAATTACCGCCACCGCCATACCCGGGATCTTTTGTTGCTCTCTAAGCGGGGTAATTGTGCGATGTACATAATCGTTGATTTGTTGAGGGGCAGCAAATGTGGAGCa > 2:421821/1‑239 (MQ=255)
tCGCCACCAAGCACGCCAGTAAATGTTTTGCTGACCGAACCTAACTCAAACAACGTTTGCTGTGTGACGGGCTGCTTTTTGGCGATGTCCGCATAGCCCCAGGTAAAGTAATAAGGTTTACCCTGAT‑‑AAATTACCGCCACCGCCATACCCGGGATCTTTTGTTGCTCTATAAGCGGGGTAATTTGGCGGTGCACAATATCGTTGTTTTTTTTAGGGGCAGAAAATGTGGGGAAAAAggg > 1:95819/1‑238 (MQ=255)
aGCACGCCAGTAAATGTTTTGCTGACCGAACCTAACTCAAACAACGTTTGCTGTGTGACGGGCTGCTTTTTGGCGATGTCCGCATAGCCCCAGGTAAAGTAATAAGGTTTACCCTGAT‑‑AAATTACCGCCACCGCCATACCCGGGATCTTTTGTTGCTCTATAAGCGGGGTAATTGTGCGATGCACAATATCGTTGATTTGTTGAGGGGCGGAAAATGTGGAGAAAGAGGGGGtaa‑ttaa > 2:908188/1‑239 (MQ=255)
gCCAGTAAATGTTTTGCTGACCGAACCTAACTCAAACAACGTTTGCTGTGTGACGGGCTGCTTTTTGGCGATGTCCGCATAGCCCCAGGTAAAGTAATAAGGTTTACCCTGAT‑‑AAATTACCGCCACCGCCATACCCGGGATCTTTTGTTGCTCTATAAGCGGGGTAATTGTGCGATGCACAATATCGTTGATTTGTTGAGGGGCAGCAAATGTGGAGCAAGAGGCGGTAA‑TTAATAAgg > 2:778614/1‑239 (MQ=255)
tttGCTGACCGAACCTAACTCAAACAACGTTTGCTGTGTGACGGGCTGCTTTTTGGCGATGTCCGCATAGCCCCAGGAAAAGTAATAAGGTTTACCCTGAT‑‑AAATTACCGCCACCGCCATACCCGGGATCTTTTGTTGCCCTCTAAACGGGGTAATTGTGCGATCCACAATTTCGTTGATTTGTTGCGGGGCCGCAAATGTGGAGCAAGAGGGGGGAATTTAAAAAGGCG‑AGAGcg > 1:22080/1‑236 (MQ=255)
tttGCTGACCGAACCTAACTCAAACAACGTTTGCTGTGTGACGGGCTGCTATTTGGCGATGTCCGCATAGCCCCAGGTAAAGTAATAAGGTTTACCCTGAT‑‑AAATTACCGCCACCGCCATACCCGGGATCTTTTGTTGCTCTATAAGCGGGGTAATTGTGCGATGCACAATATCGTTGTTTTGTTGAGGGGCAGCAAATGTGGAGCAAGAGGGGGGAA‑Ttaaaaaagggaaaggggggg > 1:881724/1‑225 (MQ=255)
acaacGTTTGCTGTGTGACGGGCTGCTTTTTGGCGATGTCCGCATAGCCCCAGGTAAAGTAATAAGGTTTACCCTGAT‑‑AAATTACCGCCACCGCCATACCCGGGAACTTTTGTTGCTCTATAAGCGGGGTAATTGTGCGATGACCAATATCGTTGATTTGTTGAGGGGCGGCAAATTGGGAGCAAGAGGCTGGAA‑TTTAAAAAGGTCCGAGCCCCGTTTTGacacaagagcttgggtt > 1:16754/1‑222 (MQ=255)
tGCTGTGTGACGGGCTGCTTTTTGGCGATGTCCGCATAGCCCCAGGTAAAGTAATAAGGTTTACCCTGAT‑‑AAATTACCGCCACCGCCATACCCGGGATCTTTTGTTGCTCTATAAGCGGGGTAATTGTGCGATGCACAATATCGTTGATTTGTTGAGGGGCAGCAAATGTGGAGCAAGAGGCGGtaa‑ttaa > 2:536942/1‑191 (MQ=255)
ggCTGCTTTTTGGCGATGTCCGCATAGCCCCAGGTAAAGTAATAAGGTTTACCCTGAT‑‑AAATTACCGCCACCGCCATACCCGGGATCTTTTGTTGCTCTATAAGCGGGGTAATTGTGCGATGCACAATATCGTTGATTTGTTGAGGGGCAGCAAATGTGGAGCAAGAGGCGGTAA‑TTAATAAGGCGCAGAGCGCCGTTTTGAACAAAGGGCCTGGTTTCC‑TTACAAACCGGACCGccta > 2:268970/1‑237 (MQ=255)
tgctTTTTGGCGATGTCCGCATAGCCCCAGGTAAAGTAATAAGGTTTACCCTGAT‑‑AAATTACCGCCACCGCCATACCCGGGATCTTTTGTTGCTCTATAAGCGGGGTAATTGTGCGATGCACAATATCGTTGATTTGTTGAGGGGCAGCAAATGTGGAGCAAGAGGCGGTAA‑TTAATAAGGCGCGGAGCGTCGTTTTGAACATAGGGACTGGTTTCC‑ATACAAAACGGCCCGCCATAgg > 2:96403/1‑239 (MQ=255)
tgctTTTTGGCGATGTCCGCATAGCCCCAGGTAAAGTAATAAGGTTTACCCTGAT‑‑AAATTACCGCCACCGCCATACCCGGGATCTTTTGTTGCTCTATAAGCGGGGTAATTGTGCGATGCACAATATCGTTGATTTGTTGAGGGGCAGCAAATGTGGAGCAAGAGGCGGTAA‑TTAATAAGGCGCAGAGCGTCGTTTTGAACATAGGGTCTGGGTTCC‑ATACAAAACGGCCCGCCATAgg > 2:829904/1‑239 (MQ=255)
ctTTTTGGCGATGTCCGCATAGCCCCAGGTAAAGTAATAAGGTTTACCCTGAT‑‑AAATTACCGCCACCGCCATACCCGGGATCTTTTGTTGCTCTATAAGCGGGGTAATTGTGCGATGCACAATATCGTTGATTTGTTGAGGGGCAGCAAATGTGGAGCAAGAGGCGGTAA‑TTAATAAGGCGCAGAGCGTCGTTTTGAACATAGGGTCTGGTTTCC‑ATACAAAACGGCCCGCCCTAGCC‑g > 2:653885/1‑239 (MQ=255)
ttgggcgatcaccATAGCCCCCGATAAAAGAAAATTGTTTTCCCTAATAAAAATCCCCGCCCCCGCCTTCCCCGGGATCTTTTGTTGCTCTAAAAGCGGGGTAATTGTGCGATGCACAATATCGTTGATTTGTTGAGGGGCAGCAAATGTGGAGCAAGAGGCGGTAA‑TTAATAAGGCGCAGAGCGTCTTTTTGAACATAGGGTCTGGTTTCC‑ATACAAAACGGCCCGCCATAGGC‑GGG‑c < 2:881724/227‑1 (MQ=255)
cAGGTAAAGTAATAAGGTTTACCCTGAT‑‑AAATTACCGCCACCGCCATACCCGGGATCTTTTGTTGCTCTATAAGCGGGGTAATTGTGCGATGCACAATATCGTTGATTTGTTGAGGGGCAGCAAATGTGGAGCAAGAGGCGGTAA‑TTAATAAGGCGCaga > 2:368717/1‑160 (MQ=255)
ggTAAAGTAATAAGGTTTACCCTGAT‑‑AAATTACCGCCACCGCCATACCCGGGATCTTTTGTTGCTCTATAAGCGGGGTAATTGTGCGATGCACAATATCGTTGATTTGTTGAGGGGCAGCAAATGTGGAGCAAGAGGCGGTAA‑TTAATAAGGCGCAGAGCGTCGTTTTGAACATAGGGTCTGGTTTCC‑ATACAAAACGGCCCGCCCTAGGC‑CGG‑CC‑GGATTTTCATTgggggatgggtt > 2:638491/1‑229 (MQ=255)
ggTAAAGTAATAAGGTTTACCCTGAT‑‑AAATTACCGCCACCGCCATACCCGGGATCTTTTGTTGCTCTATAAGCGGGGTAATTGTGCGATGCACAATATCGTTGATTTGTTGAGGGGCAGCAAATGTGGAGCAAGAGGCGGTAA‑TTAATAAGGCGCAGAGCGTCGGTTTTAACATAGGGCCTGGTTTCC‑ATACAAAAAGGCCCGCCCTAggc‑ggg‑gc‑ggggtttcactggggagacgtgt > 1:330996/1‑218 (MQ=255)
aGTAATAAGGTTTACCCTGAT‑‑AAATTACCGCCACCGCCATACCCGGGATCTTTTGTTGCTCTATAAGCGGGGTAATTGTGCGATGCACAATATCGTTGATTTGTTGAGGGGCAGCAAATGTGGAGCAAGAGGCGGTAA‑TTAATAAGGCGCAGAGCGTCGTTTTGAACATAGGGTCTGGTGTCC‑ATACAAAACAGCCCGCCCTAGGC‑GGG‑CC‑GGGTTTCACTTGGCCAGGCGTTAAA‑TTg > 2:928860/1‑239 (MQ=255)
gTAATAAGGTTTACCCTGAT‑‑AAATTACCGCCACCGCCATACCCGGGATCTTTTGTTGCTCTATAAGCGGGGTAATTGTGCGATGCACAATATCGTTGATTTGTTGAGGGGCAGCAAATGTGGAGCAAGAGGCGGTAA‑TTAATAAGGCGCAGAGCGTCGTTTTGAACATAGGGGCTGGGTTCC‑ATACAAAACGGCCCGCCCTAGGCGGGG‑CC‑GGTTTTCAATTgtgcagtggttaaattt > 2:373951/1‑223 (MQ=255)
taaGGTTTACCCTGAT‑‑AAATTACCGCCACCGCCATACCCGGGATCTTTTGTTGCTCTATAAGCGGGGTAATTGTGCGATGCACAATATCGTTGATTTGTTGAGGGGCAGCAAATGTGGAGCAAGAGGCGGTAA‑TTAATAAAGCGCAGGGCGGCCTTTTGGACATAGGGGCTGGGTTCC‑ATACAAAACGGCCCCCCCAAAGC‑GGGCCC‑GGATTTCAATTgcgaggcgagaaatggaaaaa > 1:511652/1‑219 (MQ=255)
tACCCTGAT‑‑AAATTACCGCCACCGCCATACCCGGGATCTTTTGTTGCTCTATAAGCGGGGTAATTGTGCGATGCACAATATCGTTGATTTGTTGAGGGGCAGCAAATGTGGAGCAAGAGGCGGTAA‑TTAATAAGGCGCAGAGCGTCGTTTTGAACATAGGGGCTGGTTTCC‑ATACAAAACGGCCCGCCATAGGC‑GGG‑GC‑GGGGTTTCAATGTCGATGTGATAGA‑AGGGAACAAGACCaa > 1:970221/1‑239 (MQ=255)
tACCCTGAT‑‑AAATTACCGCCACCGCCATACCCGGGATCTTTTGTTGCTCTATAAGCGGGGTAATTGTGCGATGCACAATATCGTTGATTTGTTGAGGGGCAGCAAATGTGGAGCAAGAGGCGGTAA‑TTAATAAGGCGCAGAGCGTCGTTTTGAACAAAGGGGCTGGTTTCC‑ATACAAAACGGCCCGCCATAGGC‑GGG‑CC‑GGGTTTTCATTTGCGGAGCGTTGGA‑TTGTTAAGAccccca > 2:678793/1‑237 (MQ=255)
tACCCTGAT‑‑AAATTACCGCCACCGCCATACCCGGGATCTTTTGTTGCTCTATAAGCGGGGTAATTGTGCGATGCACAATATCGTTGATTTGTTGAGGGGCAGCAAATGTGGAGCAAGAGGCGGTAA‑TTAATAAGGCGCAGAGCGTCGTTTTGAAAATAGGGTCTGGTTTCC‑CTACAAAACGGCCCGCCATAGGC‑GGG‑CCGGGATTTCCATTGGGGGTGGTTTAGA‑tttacagcacccaa > 2:926589/1‑227 (MQ=255)
tACCCTGAT‑‑AAATTACCGCCACCGCCATACCCGGGATCTTTTGTTGCTCTATAAGCGGGGTAATTGTGCGACGCACAATATCGTTGATTTGTTGAGGGGCAGCAAATGTGGAGCAAGAGGCGGTAA‑TTAATAAGGCGCCGAGCGTCGTTTTGAACATAGGGGCTGGTTTCC‑ATAAAAAACGGCCCGCCATAGGC‑GGG‑CC‑GGGTTTTAATTTGCGATTCgatcatttttaaacaaccaaa > 1:288296/1‑219 (MQ=255)
cttatttattgccccccaccccccaTCCCCGGGTGTTTTTTTTGCTTTATAAGCGGGGAAATTGGGGGATGCACAATATCGTTGATTGGGTGAGGGGCAGCAAATGGGGAGCAAGAGGTGGTAA‑TTAATAAGGCGCAGAGCGTCGTTTTGAACATAGGGTTTGGTTTCC‑ATACAAAACGGCCCGCCATAGGC‑GGG‑CC‑GGATTTACATTGGCGATGCGTTAGA‑TTGTAACGACACCAATc < 1:542961/217‑1 (MQ=255)
aT‑‑AAATTACCGCCACCGCCATACCCGGGATCTTTTGTTGCTCTATAAGCGGGGTAATTGTGCGATGCACAATATCGTTGATTTGTTGAGGGGCAGCAAATGTGGAGCAAGAGGCGGTAA‑TTAATAAGGCGCAGAGCGTCGTTTTGAACATAGGGTCTGGTTTCC‑ATACAAAACGGCCCGCCATAGGC‑GGG‑CC‑GGGTTTAAATTTGCGGGTGGTTAGA‑TTGGaaacaaccccaacaacgg > 2:287068/1‑223 (MQ=255)
t‑‑AAATTACCGCCACCGCCATACCCGGGATCTTTTGTTGCTCTATAAGCGGGGTAATTGTGCGATGCACAATATCGTTGATTTGTTGAGGGGCAGCAAATGTGGAGCAAGAGGCGGTAA‑TTAATAAGGCGCAGAGCGTCGTTTTGAACATAGGGTCTGGTTTCC‑ATACAAAACGGCCCGCCATAGGC‑GGG‑CC‑GGATTTACATTTGCGATGCGGTAGA‑TTGTAAAGAGACCAAACAGCGTg > 2:205425/1‑239 (MQ=255)
aatctccccccccggccaTACCCGGGTTTTTTTGTTGCTCTATAAGCGGGGTAATTGTGCGATGCACAATATCGTTGATTTGTTGAGGGGCAGCAAATGTGGAGCAAGAGGCGGTAA‑TTAATAAGGCGCAGAGCGTCGTTTTGAACATAGGGTCTGGTTTCC‑ATACAAAACGGCCCGCCATAGGC‑GGG‑CC‑GGATTTACATTGGCGATGCGTTAGA‑TTGTAACGACACCAATCAGCGTGa < 2:330996/225‑1 (MQ=255)
ttccccccccccgcctTCCCCGGGTTTTTTTGTTGCTTAATAAGCGGGGTAATTGGGCGAAGCACAATATCGTTGATTTGTTGAGGGGCAGCAAAGGTGGAGCAAGAGGCGTTAA‑TTAATAAGGCGCAGAGCGTCGTTTTGAACATGGGGTCTGGTTTCC‑ATACAAAACGGCCCGCCATAGGC‑GGG‑CC‑GGATTTACATTGGCGATGCGTTAGA‑TTGTAACGACACCAATCAGCGTGAC‑a < 1:205425/229‑1 (MQ=255)
ccaccccgccaTCCCCGGGTTTTTTTTTTGCTTTAAAAGGGGGTTAATTGGGGGATGCAAAATGTTGTTTATTTGTTGGGGGGAAGCAAAGGGGGATCAGGGGGCGGTAA‑TTAAAAAGGCGCAGAGGGTCTTTTTGAACATGGGGTC‑GGTTTCCAATACAAAAGGGCCCGCCATAGGC‑GGG‑CC‑GGATTTACATTGGCGATGCGTTAGA‑TTGTAACGACACCAATCAGCGTGAC‑AACTGt < 1:638491/234‑1 (MQ=255)
cggcaTCCCCGGGATTTTTTGTTGCTCTATAAGCGGGGTAATTGTGCGATGCACATTATCGTTGATTTGTTGAGGGGCAGCAAATGTGGAGCAAGAGGCGGTAA‑TTAATAAGGCGCAGAGCGTCGTTTTGAACATAGGGTCTGGTTTCC‑ATACAAAACGGCCCGCCATAGGC‑GGG‑CC‑GGATTTACATTGGCGATGCGTTAGA‑TTGTAACGACACCAATCAGCGTGAC‑AACTGTCAGGAt < 2:486529/236‑1 (MQ=255)
cgccaTACCCGGGATCTTTTGTTGCTCTATAAGCGGGGTAATTGTGCGATGCACAATATCGTTGATTTGTTGAGGGGCAGCAAATGTGGAGCAAGAGGCGGTAA‑TTAATAAGGCGCAGAGCGTCGTTTTGAACAt < 2:430276/135‑1 (MQ=255)
cgccaTACCCGGGATCTTTTGTTGCTCTATAAGCGGGGTAATTGTGCGATGCACAATATCGTTGATTTGTTGAGGGGCAGCAAATGTGGAGCAAGAGGCGGTAA‑TTAATAAGGCGCAGAGCGTCGTTTTGAAAAt > 1:430276/1‑135 (MQ=255)
ccctttccccGGGTTTTTTTGTTGCTCTAAAGGGGGGGTAATTGTGGGATGCAAAATATGGTGGATTGGTTGAGGGGGAGAAAATGTGGAGAAAGGGGGGGTAA‑TTAATAAGGCCCAGGGCGTGGTTTTGAACATAGGGTCTGGTTTCC‑ATACAAAACGGCCCGCCATAGGC‑GGG‑CC‑GGATTTACATTGGCGATGCGTTAGA‑TTGTAACGACACCAATCAGCGTGAC‑AACTGTCAGGAt < 1:829904/232‑1 (MQ=255)
gggATCTTTTGTTGCTCTATAAGCGGGGTAATTGTGCGATGCACAATATCGTTGATTTGTTGAGGGGCAGCAAATGTGGAGCAAGAgg > 2:4935/1‑88 (MQ=255)
gggATCTTTTGTTGCTCTATAAGCGGGGTAATTGTGCGATGCACAATATCGTTGATTTGTTGAGGGGCAGCAAATGTGGAGCAAGAgg < 1:4935/88‑1 (MQ=255)
gggATCTTTTGTTGCTCTATAAGCGGGGTAATTGTGCGATGCACAATATCGTTGATTTGTTGAGGGGCAGCAAATGTGGAGCAAGAGGCGGTAA‑TTAATAAGGCGCAGAGCGTCGTTTTGa < 2:916224/121‑1 (MQ=255)
gggATCTTTTGTTGCTCTATAAGCGGGGTAATTGTGCGATGCACAATATCGTTGATTTGTTGAGGGGCAGCAAATGTGGAGCAAGAGGCGGTAA‑TTAATAAGGCGCAGAGCGTCGTTTTGa > 1:916224/1‑121 (MQ=255)
gggATCTTTGGTTGCTCTATAGGCGGGGTAATTGTGCGATGCACAATATCGTTGATTTGTTGAGGGGCAGAAAATGGGGAGCAAGAGGCGGTAA‑TTAATAAGGCGCAGAGCGTCGTTTTGAACATAGGGTCTGGTTTCC‑ATACAAAACGGCCCGCCATAGGC‑GGG‑CC‑GGATTTACATTGGCGATGCGTTAGA‑TTGTAACGACACCAATCAGCGTGAC‑AACTGTCAGGATAGC‑AGCCAGa < 2:970221/239‑1 (MQ=255)
ttataAGCGGGGTAATTGTGCGATGCAAAATATCGTTGATTTGTTGGGGGGCAGCAAATGTGGAGCAAGAGGCGGTAA‑TTAATAAGGCGCAGAGCGTCGTTTTGAACATAGGGTCTGGTTTCC‑ATACAAAACGGCCCGCCATAGGC‑GGG‑CC‑GGATTTACATTGGCGATGCGTTAGA‑TTGTAACGACACCAATCAGCGTGAC‑AACTGTCAGGATAGC‑AGCCAGACCGTAGa < 2:759755/229‑1 (MQ=255)
ggTAATTGTGCGATGCACAATATCGTTGATTTGTTGAGGGGCAGCAAATGTGGAGCAAGAGGCGGTAA‑TTAATAAGGGGCAGAGCGTCGTTTTGAAAATAGGGGCTGGGTTCC‑ATAAAAAAAGGCCCGCCCTAGGC‑GGG‑CC‑GGGGTTTCATTTGCGGGGCGTTTGA‑TTGTAACTCACCCCATACGCGGGAC‑AACTGTCAGGGAAGCAACCCAAACCGAAAAAAA‑ccaacttccgtctct > 1:759755/1‑226 (MQ=255)
ggTAATTGTGCGATGCACAATATCGTTGATTTGTTGAGGGGCAGCAAATGTGGAGCAAGAGGCGGTAA‑TTAATAAGGCGCAGAGCGTCGTTTTGAACATAGGGTCTGGTTTCC‑ATACAAAACGGCCCGCCATAGGC‑GGG‑CC‑GGGTTTACATTTGCGATGCGTTTGATTTGAACCGAC‑CCAATCAACGGGAC‑AACTGTCAGGAAAGA‑AGCCAAACCCTGAAAAA‑ACCACTTGGCCGCCgg > 2:887233/1‑239 (MQ=255)
gTAATTGTGCGATGCACAATATCGTTGATTTGTTGAGGGGCAGCAAATGTGGAGCAAGAGGCGGTAA‑TTAATAAGGCGCAGAGCGTCGTTTTGAACATAGGGTCTGGTTTCC‑ATACAAAACGGCCCGCCATAGGC‑GGG‑CC‑GGGTTTACATTTGCGCTGCGTTAGA‑ATTTAAAGACACCAATCAGCGGGAC‑AAACCTCAGGGTAGC‑AACCAGACCGTTAAAAA‑ACCACTTTCCCCCAggg > 2:979529/1‑238 (MQ=255)
gTAATTGTGCGATGCACAATATCGTTGATTTGTTGAGGGGCAGCAAATGTGGAGCAAGAGGCGGTAA‑TTAATAAGGCGCAGAGCGTCGTTTTGAACATAGGGTCTGGTTTCC‑ATACAAAACGGCCCGCCATAGGC‑GGG‑CC‑GGGTTTACATTGGCGATGCGGTAGA‑TTGTAACGACACCAATCAGCGGGAC‑AACTGTCAGGATAGC‑AGCCAGACCGTAGaaaatgtctcttatacacaa > 2:218256/1‑222 (MQ=255)
gTAATTGTGCGATGCACAATATCGTTGATTTGTTGAGGGGCAGCAAATGTGGAGCAAGAGGCGGTAA‑TTAATAAGGCGCAGAGCGTCGTTTTGAACATAGGGTCTGGTTTCC‑ATACAAAACGGCCCGCCATAGGC‑GGG‑CC‑GGATTTACATTGGCGAACGGTTAGA‑TTGTAAAGAAACCAAACAGCGTGGC‑AAATGGCCGGGTAAC‑AGCCAAACCCTAGAAAA‑CCCATTTGCCCCCAggg > 2:475811/1‑238 (MQ=255)
aTTGTGGGACGCAAAATCTTGTTGATTGTTTGGGGGGAAGAAAATGGGGAGAAAGGGGCGGTAA‑TTAATAAGGCGAAGAGCGTCGTTTTGAACATAGGGTCTGGTTTCC‑ATACAAAACGGCCCGCCATAGGC‑GGG‑CC‑GGATTTACATTGGCGATGCGTTAGA‑TTGTAACGACACCAATCAGCGTGAC‑AACTGTCAGGATAGC‑AGCCAGACCGTAGAAAA‑CCCATTTGCCCGCAGGTACg < 2:288296/239‑1 (MQ=255)
cacaATATCGTTGATTTGTTGAGGGGCAGCAAATGTGGAGCAAGAGGCGGTAA‑TTAATAAGGCGCAGAGCGTCGTTTTGAACATAGGGTCTGGTTTCC‑ATACAAAACGGCCCGCCATAGGC‑GGG‑CC‑CGGTTTTCAATTGGGGTGCGTTTGATTTTTACCAACCCCAACCAGCG‑GACAAACTGTCGGGTAAGA‑ACCCA‑ACCCTACAAAA‑ACCAATTTCCCGCaagcacagggaattttca > 1:24730/1‑222 (MQ=255)
tttttggagggggCAACAAAGGGGGAGCAAGGGGCGGTAA‑TTAATAAGGCCCAGGGCGTCGTTTTGAACATGGGGTCTGGTTTCC‑ATAAAAAACGGCCCGCCATAGGC‑GGG‑CC‑GGATTTACATTGGCGATGCGTTAGA‑TTGTAACGACACCAATCAGCGTGAC‑AACTGTCAGGATAGC‑AGCCAGACCGTAGAAAA‑CCCATTTGCCCGCAGGTACGTGGATTTTCAGATCGTGCATcgcg < 2:88309/230‑1 (MQ=255)
tttGTTGAGGGGCAGAAAATGGGGAGCAAGAGGGAGTAA‑TTAATAAGGCGCAGGGCGTCGTTTTGAAAATAGGGTCTGGTTTCC‑ATACAAAACGGCCCGCCATAGGC‑GGG‑CC‑GGATTTACATTGGCGATGCGTTAGA‑TTGTAACGACACCAATCAGCGTGAC‑AACTGTCAGGATAGC‑AGCCAGACCGTAGAAAA‑CCCATTTGCCCGCAGGTACGTGGATTTTCAGATCGTGCATCGCgt < 2:24730/239‑1 (MQ=255)
tttgGGGGGAAGAAAAGGGGGAGAAAGGGGGGGGAA‑TAAAGAAGGGGCAGAGCGTGGTTTGGAAAATGGGGTTTGGTTTCC‑ATAAAAAACGGGCCGCCATAGGC‑GGG‑CC‑GGATTTACATTGGCGATGCGTTAGA‑TTGTAACGACACCAATCAGCGTGAC‑AACTGTCAGGATAGC‑AGCCAGACCGTAGAAAA‑CCCATTTGCCCGCAGGTACGTGGATTTTCAGATCGTGCATCGCgtggt < 1:926589/238‑1 (MQ=255)
ggtgAGGGGAAGAAAATGGGGAGCAAGGGGCGGAAA‑TTAAAAAGGCGAAGGGCGTCGTTTTGAACAAAGGGTCTGGTTTCC‑ATACAAAACGGCCCGCCATAGGC‑GGG‑CC‑GGATTTACATTGGCGATGCGTTAGA‑TTGTAACGACACCAATCAGCGTGAC‑AACTGTCAGGATAGC‑AGCCAGACCGTAGAAAA‑CCCATTTGCCCGCAGGTACGTGGATTTTCAGATCGTGCATCGCgtggt < 2:95819/237‑1 (MQ=255)
ttgAGGGGCAGAAAATGTGGAGCAAGAGGCGGTAA‑TTAATAAGGCGCAGAGCGTCGTTTTGAACATAGGGTCTGGTTTCC‑ATACAAAACGGCCCGCCATAGGC‑GGG‑CC‑GGATTTACATTGGCGATGCGTTAGa < 2:138649/133‑1 (MQ=255)
ggggCAAAAAAGGGGGAGAAAGAGGTGGTAA‑TTAATAGGGGCCAGAGCGTCTTTTTGAACAGAGGTTTTGGTTTCC‑ATACAAAACGGCCCGCCATAGGC‑GGG‑CC‑GGATTTACATTGGCGATGCGTTAGA‑TTGTAACGACACCAATCAGCGTGAC‑AACTGTCAGGATAGC‑AGCCAGACCGTAGAAAA‑CCCATTTGCCCGCAGGTACGTGGATTTTCAGATCGTGCATCGCGTGGTGCAt < 2:598813/238‑1 (MQ=255)
gggCAGCAAATGGGGAGCAAGGGTCGGTAA‑TTAAAAAGGCGCAGAGCGTGGTTTTGAACATAGGTTGTGGTTTCC‑ATACAAAACGGCCCGCCATAGGC‑GGG‑CC‑GGATTTACATTGGCGATGCGTTAGA‑TTGTAACGACACCAATCAGCGTGAC‑AACTGTCAGGATAGC‑AGCCAGACCGTAGAAAA‑CCCATTTGCCCGCAGGTACGTGGATTTTCAGATCGTGCATCGCGTGGTGCATa < 2:932181/238‑1 (MQ=255)
gcagcaAATGTGGAGCAAGAGGCGGTAA‑TTAATAAGGCGCAGAGCGTCGTTTTGAACATAGGGGCTGGTTTCC‑ATACAAAACGGCCCGCCATAGGC‑GGG‑CC‑GGGTTTACATTTGCGATGCGTTAGA‑TTGTAAAGACACCAATCAGCGTGAA‑AACTGGCAGGATAGC‑AGCCAGACCCTAGAAAACCCCATTTG‑CCGCAGGGACGTGGGATTTCAAATCTTGCaagcccgggggccaacg > 2:948592/1‑222 (MQ=255)
|
CCTCGAGCAATAGCGTCGCCACCAAGCACGCCAGTAAATGTTTTGCTGACCGAACCTAACTCAAACAACGTTTGCTGTGTGACGGGCTGCTTTTTGGCGATGTCCGCATAGCCCCAGGTAAAGTAATAAGGTTTACCCTGAT‑‑AAATTACCGCCACCGCCATACCCGGGATCTTTTGTTGCTCTATAAGCGGGGTAATTGTGCGATGCACAATATCGTTGATTTGTTGAGGGGCAGCAAATGTGGAGCAAGAGGCGGTAA‑TTAATAAGGCGCAGAGCGTCGTTTTGAACATAGGGTCTGGTTTCC‑ATACAAAACGGCCCGCCATAGGC‑GGG‑CC‑GGATTTACATTGGCGATGCGTTAGA‑TTGTAACGACACCAATCAGCGTGAC‑AACTGTCAGGATAGC‑AGCCAGACCGTAGAAAA‑CCCATTTGCCCGCAGGTACGTGGATTTTCAGATCGTGCATCGCGTGGTGCATACG > NC_000913/4378656‑4379124
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
N/A
