Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A7 F28 I0 R1 140 172.9 3477528 97.9% 3404499 226.2

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation freq annotation gene description
RA NC_000913 1,456,716 T→G 14.8% V96G (GTC→GGC)  paaE → ring 1,2‑phenylacetyl‑CoA epoxidase, NAD(P)H oxidoreductase component

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0009131,456,7160TG14.8% 326.6 / 2.7 119V96G (GTC→GGC) paaEring 1,2‑phenylacetyl‑CoA epoxidase, NAD(P)H oxidoreductase component
Reads supporting (aligned to +/- strand):  ref base T (19/73);  new base G (24/2);  total (44/75)
Fisher's exact test for biased strand distribution p-value = 2.43e-11
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00

Only 100 of 119 total aligned reads displayed.

GATGCGGTGACCATTACCTTTGCGGTGCCCCAGCCTTTGCAGGAGGCGTATCGCTTTCGCCCCGGTCAACATTTGACCTTAAAAGCCAGCTTTGATGGTGAAGAATTACGCCGTTGTTACTCCATTTGCCGCAGCTATCTGCCTGGCGAAATTAGTGTGGCGG‑TG‑AAAGCCATTG‑AAGGCGGAC‑GTTTCTCCCGCTATGCCCGCGAACACATCCGCCAGGGTATGA‑CGCTGGAGGTCATGGTGCCG‑CAGGGGCATTTCGGCTATCAGCCGCAGGCCGAACGCCAGGGGCGCTATCTGGCAATTGCAGCAGGATCAGGTATTACGCCAATGCTGGCGATTATCG‑CCACCACTTTACAAACCGAGCCTGAAAGTCAGTTCACCCTGATCTACGGTAACCGTACCAGCCAGAGCATGATGTTTCGCCAGGCACTGGCAGACCTGAAAGACAAATATCCTCAGCGTTTACAGTT  >  NC_000913/1456481‑1456950
                                                                                                                                                                                                                                                |                                                                                                                                                                                                                                            
gATGCGGTGACCATTACCTTTGCGGTGCCCCAGCCTTTGCAGGAGGCGTATCGCTTTCGCCCCGGTCAACATTTGACCTTAAAAGCCAGCTTTGATGGTGAAGAATTACGCCGTTGTTACTCCATTTGCCGCAGCTATCTGCCTGGCGAAATTAGTGTGGCGG‑TG‑AAAGCCATTG‑AAGGCGGAC‑GTTTCTCCCGCTATGCCCGCGAACACATCCGCCAGGGTATGA‑CGCTGGAGGTCa                                                                                                                                                                                                                                            <  2:474566/238‑1 (MQ=255)
      gTGACCATTACCTTTGCGGTGCCCCAGCCTTTGCAGGAGGCGTATCGCTTTCGCCCCGGTCAACATTTGACCTTAAAAGCCAGCTTTGATGGTGAAGAATTACGCCGTTGTTACTCCATTTGCCGCAGCTATCTGCCTGGCGAAATTAGTGTGGCGG‑TG‑AAAGCCATTG‑TAGGCGGACGGTTTTCCCCCCTTTCCCCCCGAACCCA‑CCGCCCGGGGGTGG‑AGCTGGGGGGCATGGGGc                                                                                                                                                                                                                                      >  1:626726/1‑238 (MQ=255)
                  tttGCGGTGCCCCAGCCTTTGCAGGAGGCGTATCGCTTTCGCCCCGGTCAACATTTGACCTTAAAAGCCAGCTTTGATGGTGAAGAATTACGCCGTTGTTACTCCATTTGCCGCAGCTATCTGCCTGGCGAAATTAGTGTGGCGG‑TG‑AAAGCCATTG‑AAGGCGGAC‑GTTTCTCCCGCTATGCCCGCGAACACATCCGCCAGGGTATGA‑CGCTGGAGGTCATGGTGCCG‑CAGGGGCAttt                                                                                                                                                                                                                        <  2:555148/239‑1 (MQ=255)
                   ttGCGGTGCCCCAGCCTTTGCAGGAGGCGTATCGCTTTCGCCCCGGTCAACATTTGACCTTAAAAGCCAGCTTTGATGGTGAAGAATTACGCCGTTGTTACTCCATTTGCCGCAGCTATCTGCCTGGCGAAATTAGTGTGGCGG‑TG‑GAAACCCTTG‑AAAGGGGGG‑GTTTTTCCCCCTATGCCCGCGGAAACAACCCCCCGGGTCTGA‑GGCTGGGGGGCCTgggtgcgccgggggctttc                                                                                                                                                                                                                        >  1:963059/1‑222 (MQ=255)
                     gCGGTTCCCCAGCCTTTGCAGGAGGCGTATCGCTTTCGCCCCGGTCAACATTTGACCTTAAAAGCCAGCTTTGATGGTGAAGAATTACGCCGTTGTTACTCCATTTGCCGCAGCTATCTGCCTGGCGAAATTAGTGTGGCGG‑TG‑AAAGCCATTG‑AAGGCGGAC‑GTTTCTCCCGCTATGCCCGCGAACACATCCGCCAGGGTATGA‑CGCTGGAGGTCATGGTGCCG‑CAGGGGCATTTCgg                                                                                                                                                                                                                     <  1:1153410/239‑1 (MQ=255)
                     gCGGTGCCCCAGCCTTTGCAGGAGGCGTATCGCTTTCGCCCCGGTCAACATTTGACCTTAAAAGCCAGCTTTGATGGTGAAGAATTACGCCGTTGTTACTCCATTTGCCGCAGCTATCTGCCTGGCGAAATTAGTGTGGCGG‑TG‑GAAGCCATTG‑AAAGCGGGA‑GTTTTTCCCCCTATACCCCCGGAACCATCCGCCAGGGGATGG‑CGCTGGGGGGTCTGGGGCCC‑GCGGGGCACTTCgg                                                                                                                                                                                                                     >  1:1064127/1‑239 (MQ=255)
                        gTGCCCCAGCCTTTGCAGGAGGCGTATCGCTTTCGCCCCGGTCAACATTTGACCTTAAAAGCCAGCTTTGATGGTGAAGAATTACGCCGTTGTTACTCCATTTGCCGCAGCTATCTGCCTGGCGAAATTAGTGTGGCGG‑TG‑TAAACCCTTG‑AAGGGGGGC‑GTTTCTCCCCCTTTGCCCGCGAAGAAATCCGCCAGGGGATGA‑GCCTGGCGGGCACGGTGCCG‑CCCGGGCATTTCGGc                                                                                                                                                                                                                    >  1:340563/1‑237 (MQ=255)
                           ccccAGCCTTTGCAGGAGGCGTATCGCTTTCGCCCCGGTCAACATTTGACCTTAAAAGCCAGCTTTGATGGTGAAGAATTACGCCGTTGTTACTCCATTTGCCGCAGCTATCTGCCTGGCGAAATTAGTGTGGCGG‑TG‑ATAAGCATTT‑AAGGCGGGCGGGTTTCCCCCCTTTCCCCCCGAAC‑CAACCGCCACGGGATGA‑GGCTGGGGGGGCTGGTGCTC‑CAgggggcttttgggctttc                                                                                                                                                                                                               >  1:1129427/1‑225 (MQ=255)
                           ccccAGCCTTTGCAGGAGGCGTATCGCTTTCGCCCCGGTCAACATTTGACCTTAAAAGCCAGCTTTGATGGTGAAGAATTACGCCGTTGTTACTCCATTTGCCGCAGCTATCTGCCTGGCGAAATTAGTGTGGCGG‑TG‑AAAGCCATTT‑AAGGCGGAC‑GGTTCTCCCGCTATGCCCGCGAACACATCCGCCAGGGTATGA‑CGCTGGGGGGCATGGTGCCG‑CACGGGGATTTTGGCTATcc                                                                                                                                                                                                               >  2:1281106/1‑238 (MQ=255)
                           ccccAGCCTTTGCAGGAGGCGTATCGCTTTCGCCCCGGTCAACATTTGACCTTAAAAGCCAGCTTTGATGGTGAAGAATTACGCCGTTGTTACTCCATTTGCCGCAGCTATCTGCCTGGCGAAATTAGTGTGGCGG‑TG‑AAAACCCTTGTAAGCGGGGC‑GTTT‑TCCCGCCATTCCCGCGCAACCAACCCCCAGGGGATGA‑CGCCTGAGGGGCAGGGGCCG‑CCAGGGGATTTCgggcacc                                                                                                                                                                                                                >  1:101920/1‑233 (MQ=255)
                                  cTTTGCA‑GAGGCGTATCGCTTTCGCCCCGGTCAACATTTGACCTTAAAAGCCAGCTTTGATGGTGAAGAATTACGCCGTTGTTACTCCATTTGCCGCAGCTATCTGCCTGGCGAAATTAGTGTGGCGG‑TG‑AAAGCCATTG‑AAGGCGGAC‑GTTTCTCCCGCTATGCCCGCGAACACATCCGCCAGGGTATGA‑CGCTGGAGGTCATGGTGCCG‑CAGGGGCATTTCGGCTATCAGCCGCa                                                                                                                                                                                                         <  2:1630876/237‑1 (MQ=255)
                                     tGCAGGAGGCGTATCGCTTTCGCCCCGGTCAACATTTGACCTTAAAAGCCAGCTTTGATGGTGAAGAATTACGCCGTTGTTACTCCATTTGCCGCAGCTATCTGCCTGGCGAAATTAGTGTGGCGG‑TC‑AAAACCCTTT‑AAGGAGGAA‑GGTTTTCCCCCCATTGCCCCGAACAAAACCCCCAGGGGATGA‑CGGAGGAGGGCCTTGTGTCG‑CCGGGGGCTTTccgtcgtctgccgcccgcc                                                                                                                                                                                                     >  1:1253216/1‑221 (MQ=255)
                                     tGCAGGAGGCGTATCGCTTTCGCCCCGGTCAACATTTGACCTTAAAAGCCAGCTTTGATGGTGAAGAATTACGCCGTTGTTACTCCATTTGCCGCAGCTATCTGCCTGGCGAAATTAGTGTGGCGG‑CG‑AAAACCCTTG‑AAAGGGGAC‑GGTTTTTCCCCCCTTCCCCCGGACAACTCCGCCAGGGGGTGACCCCTGGGGGTCATGGGCCGG‑CAGGGCCGTTTGCGCT‑TCAGcccccgggc                                                                                                                                                                                                     >  1:731673/1‑232 (MQ=255)
                                      gCAGGAGGCGTATCGCTTTCGCCCCGGTCAACATTTGACCTTAAAAGCCAGCTTTGATGGTGAAGAATTACGCCGTTGTTACTCCATTTGCCGCAGCTATCTGCCTGGCGAAATTAGTGTGGCGG‑TG‑AAAGCCATTG‑AAGGCGGAC‑GTTTCTCCCGCTATGCCCGCGAACACATCCGCCAGGGTATGA‑CGCTGGAGGTCATGGTGCCG‑CAGGGGCATTTCGGCTATCAGCCGCAGGCCg                                                                                                                                                                                                    <  2:656770/239‑1 (MQ=255)
                                          gaggCGTATCGCTTTCGCCCCGGTCAACATTTGACCTTAAAAGCCAGCTTTGATGGTGAAGAATTACGCCGTTGTTACTCCATTTGCCGCAGCTATCTGCCTGGCGAAATTAGTGTGGCGG‑TG‑AAAGCCATTG‑AAGGCGGAC‑GTTTCTCCCGCTATGCCCGCGAACACATCCGCCAGGGTATGA‑CGCTGGAGGTCATGGTGCCG‑CAGGGGCATTTCGGCTATCAGCCGCa                                                                                                                                                                                                         <  2:1265145/230‑1 (MQ=255)
                                           aggCGTATCGCTTTCGCCCCGGTCAACATTTGACCTTAAAAGCCAGCTTTGATGGTGAAGAATTACGCCGTTGTTACTCCATTTGCCGCAGCTATCTGCCTGGCGAAATTAGTGTGGCGG‑TG‑AAAGCCATTG‑AAAGCGGAC‑GTTTTTCCCCCTATGCCCGCGGACACATCCGCCAGGGGATGA‑CGCTGGGGGGCATGGGGCCG‑CCGGGGCATTTCTGCTATCAGCCGCAGGCCGAACg                                                                                                                                                                                                >  2:882791/1‑238 (MQ=255)
                                             gCGTATCCCTTTCGCCCCGGTCACCATTTGACCTTAAAAGCCAGCTTTGATGGTGAAGAATTACGCCGTTGTTACTCCATTTGCCGCAGCTATCTGCCTGGCGAAATTAGTGTGGCGG‑TG‑AAAGCCATTG‑AAGGCGGAC‑GTTTCTCCCGCTATGCCCGCGAACACATCCGCCAGGGTATGA‑CGCTGGAGGTCATGGTGCCG‑CAGGGGCATTTCGGCTATCAGCCGCAGGCCGAACGcc                                                                                                                                                                                              <  2:1133696/238‑1 (MQ=255)
                                              cGTATCGCTTTCTCCCCGGTCAACATTTGACCTTAAAAGCCAGCTTTGATGGTGAAGAATTACGCCGTTGTTACTCCATTTGCCGCAGCTATCTGCCTGGCGAAATTAGTGTGGCGG‑TG‑AAAGCCATTG‑AAGGCGGAC‑GTTTCTCCCGCTATGCCCGCGAACACATCCGCCAGGGTATGA‑CGCTGGAGGTCATGGTGCCG‑CAGGGGCATTTCGGCTATCAGCCGCAGGCCGAACGcc                                                                                                                                                                                              <  2:1150879/237‑1 (MQ=255)
                                               gTATCGCTTTCGCCCCGGTCAACATTTGACCTTAAAAGCCAGCTTTGATGGTGAAGAATTACGCCGTTGTTACTCCATTTGCCGCAGCTATCTGCCTGGCGAAATTAGTGTGGCGG‑TG‑AAAGCCCTTG‑AAGGCGGAC‑GTTTCTCCCGCTATGCCCGCGAACACATCCGCCAGGGGATGG‑AGCCGGGGGGCATGGGGCCG‑CCGGGGGGCTTTGGCTATACGCCCCCGGCCGGACGCCCgg                                                                                                                                                                                           >  1:1427043/1‑239 (MQ=255)
                                                    gCTTTCGCCCCGGTCAACATTTGACCTTAAAAGCCAGCTTTGATGGTGAAGAATTACGCCGTTGTTACTCCATTTGCCGCAGCTATCTGCCTGGCGAAATTAGTGTGGCGG‑TG‑AAAGCCCTTG‑AAGGGGGGC‑GTTTCTCCCGCTATGCCCGCGGACACAACCCCCCGGGGATGA‑CGCGGGGGGGCCTGGTGCCGCCAGGGGC‑TTTTGGCGTTCAGACGCCGGCCGAGCGccccgtctct                                                                                                                                                                                      >  1:1265145/1‑231 (MQ=255)
                                                       ttCGCCCCGGTCAACATTTGACCTTAAAAGCCAGCTTTGATGGTGAAGAATTACGCCGTTGTTACTCCATTTGCCGCAGCTATCTGCCTGGCGAAATTAGTGTGGCGG‑TG‑AAAGCCATTG‑AAGGCGGAC‑GTTTCTCCCGCTATGCCCGCGAACACATCCGCCAGGGTATGA‑CGCTGGAGGTCATGGTGCCG‑CAGGGGCATTTCGGCTATCAGCCGCAGGCCGAACGCCAGGGGCGCTAt                                                                                                                                                                                   <  2:1410362/239‑1 (MQ=255)
                                                       ttCGCCCCGGTCAACATTTGACCTTAAAAGCCAGCTTTGATGGTGAAGAATTACGCCGTTGTTACTCCATTTGCCGCAGCTATCTGCCTGGCGAAATTAGTGTGGCGG‑TG‑AAAGCCATTG‑AAGGCGGAC‑GTTTCTCCCGCTATGCCCGCGAACACATCCGCCAGGGTATGA‑CGCTGGAGGTCATGGTGCCG‑CAGGGGCATTTCGGCTATCAGCCGCAGGCCGAACGCCAGGGGCGCTAt                                                                                                                                                                                   <  2:1369072/239‑1 (MQ=255)
                                                       ttCGCCCCGGTCAACATTTGACCTTAAAAGCCAGCTTTGATGGTGAAGAATTACGCCGTTGTTACTCCATTTGCCGCAGCTATCTGCCTGGCGAAATTAGTGTGGCGG‑TG‑AAAGCCATTG‑AAGGCGGAC‑GTTTCTCCCGCTATGCCCGCGAACACATCCGCCAGGGTATGA‑CGCTGGAGGTCATGGTGCCG‑CAGGGGCATTTCGGCTATCAGCCGCAGGCCGAACGCCAGGGGCGCTAt                                                                                                                                                                                   <  2:963059/239‑1 (MQ=255)
                                                       ttCGCCCCGGTCAACATTTGACCTGAAAAGTCAGCTATGATGGTTAAGAATTACGCCGTTGTTACGCCATTTGCCGCAGCTATCTGCCTGGCGAAATTAGTGTGGCGG‑TG‑AAAGCCGTTG‑AAGGCGGAC‑GTTTCTCCCGCTATGCCCGCGAACCCATCCGCCAGGGTATGA‑CGCTGGAGGGCATGGTGCCG‑CAGGGGCATTACGGCTATCAGCCGCAGGCCGAACGCCAGGGGCGCTAt                                                                                                                                                                                   <  1:1089969/239‑1 (MQ=255)
                                                                gTCAACATTTGACCTTAAAAGCCAGCTTTGATGGTGAAGAATTACGCCGTTGTTACTCCATTTGCCGCAGCTATCTGCCTGGCGAAATTAGTGTGGCGG‑TG‑AAAGGCCTTG‑AAGGCGGGC‑GTTTCTCCCGCCATGCCCGCGGACACCTCCCCCCGGGGATGA‑CGCTGGGGGGCCTGGTGCCG‑CCGGGGCATTTCGGCTATCAGCCGCCGGCCGGCCGCCCGGGGGGGCACCTGGCCAtt                                                                                                                                                                          >  1:625641/1‑239 (MQ=255)
                                                                    aCATTTGACCTTAAAAGCCAGCTTTGATGGTGAAGAATTACGCCGTTGTTACTCCATTTGCCGCAGCTATCTGCCTGGCGAAATTAGTGTGGCGG‑TG‑AAAGCCATTG‑AAGGCGGAC‑GTTTCTCCCGCTATGCCCGCGAACACATCCGCCAGGGTATGA‑CGCTGGAGGTCATGGTGCCG‑CAGGGGCATTTCGGCTATCAGCCGCAGGCCGAACGCCAGGGGCGCTATCTGGCAATTgcag                                                                                                                                                                      <  2:626726/239‑1 (MQ=255)
                                                                     cATTTGACCTTAAAAGCCAGCTTTGATGGTGAAGAATTACGCCGTTGTTACTCCATTTGCCGCAGCTATCTGCCTGGCGAAATTAGTGTGGCGG‑TG‑AAAGCCATTG‑AAGGCGGAC‑GTTTCTCCCGCTATGCCCGCGAACACATCCGCCAGGGTATGA‑CGCTGGAGGTCATGGTGCCG‑CAGGGGCATTTCGGCTATCAGCCGCAGGCCGAACGCCAGGGGCGCTATCTGGCAATTgcagc                                                                                                                                                                     <  1:1062506/239‑1 (MQ=255)
                                                                     cATTTGACCTGAAAAGCCAGCTTTGATGGTGAAGAATTACGCCGTTGTTACTCCAGTTGCCGCAGCTATCTGCCTGGCGAAATTAGTGTGGCGG‑TG‑AAAGCCATTG‑AAGGCGGGC‑GTTTCTCCCGCTATGCCCGCGAACACATCCGCCAGGGTATGA‑CGCTGGAGGTCATGGTGCCG‑CAGGGGCATTTCGGCTATCAGCCGCAGGCCGAACGCCAGGGGCGCTATCTGGCAATTgcagc                                                                                                                                                                     <  1:308069/239‑1 (MQ=255)
                                                                      aTTTGACCTTAAAAGCCAGCTTTGATGGTGAAGAATTACGCCGTTGTTACTCCATTTGCCGCAGCTATCTGCCTGGCGAAATTAGTGTGGCGG‑TG‑AAAGCCATTG‑AAGGCGGAC‑GTTTCTCCCGCTATGCCCGCGAACACATCCGCCAGGGTATGA‑CGCTGGAGGTCATGGTGCCG‑CAGGGGCATTTCGGCTATCAGCCGCAGGCCGAACGCCAGGGGCGCTATCTGGCAATTgcagca                                                                                                                                                                    <  2:104840/239‑1 (MQ=255)
                                                                         tGACCTTAAAAGCCAGCTTTGATGGTGAAGAATTACGCCGTTGTTACTCCATTTGCCGCAGCTATCTGCCTGGCGAAATTAGTGTGGCGG‑TG‑AAAGCCATTG‑AAGGCGGAC‑GTTTCTCCCGCTATGCCCGCGAACACATCCGCCAGGGTATGA‑CGCTGGAGGTCATGGTGCCG‑CAGGGGCATTTCGGCTATCAGCCGCAGGCCGAACGCCAGGGGCGCTATCTGGCAATTGCAGCAGGa                                                                                                                                                                 <  1:78863/239‑1 (MQ=255)
                                                                          gACCTTAAAAGCCAGCTTTGATGGTGAAGAATTACGCCGTTGTTACTCCATTTGCCGCAGCTATCTGCCTGGCGAAATTAGTGTGGCGG‑TG‑AAAGCCATTG‑AAGGCGGAC‑GTTTCTCCCGCTATGCCCGCGAACACATCCGCCAGGGTATGA‑CGCTGGAGGTCATGGTGCCG‑CAGGGGCATTTCGGCTATCAGCCGCAGGCCGAACGCCAGGGGCGCTATCTGGCAATTGCAGCAGGAt                                                                                                                                                                <  1:164265/239‑1 (MQ=255)
                                                                          gACCTTAAAAGCCAGCTTTGATGGTGAAGAATTACGCCGTTGTTACTCCATTTGCCGCAGCTATCTGCCTGGCGAAATTAGTGTGGCGG‑TG‑AAAGCCATTG‑AAGGCGGAC‑GTTTCTCCCGCTATGCCCGCGAACACATCCGCCAGGGTATGA‑CGCTGGAGGTCATGGTGCCG‑CAGGGGCATTTCGGCTATCAGCCGCAGGCCGAACGCCAGGGGCGCTATCTGGCAATTGCAGCAGGAt                                                                                                                                                                <  2:1625606/239‑1 (MQ=255)
                                                                          gACCTTAAAAGCCAGCTTTGATGGTGAAGAATTACGCCGTTGTTACTCCATTTGCCGCAGCTATCTGCCTGGCGAAATTAGTGTGGCGG‑TG‑AAAGCCATTG‑AAGGCGGAC‑GTTTCTCCCGCTATGCCCGCGAACACATCCGCCAGGGTATGA‑CGCTGGAGGTCATGGTGCCG‑CAGGGGCATTTCGGCTATCAGCCGCAGGCCGAACGCCAGGGGCGCTATCTGGCAATTGCAGCAGGAt                                                                                                                                                                <  2:520709/239‑1 (MQ=255)
                                                                          gACCTTAAAAGCCAGCTTTGATGGTGAAGAATTACGCCGTTGTTACTCCATTTGCCGCAGCTATCTGCCTGGCGAAATTAGTGTGGCGG‑TG‑AAAGCCATTG‑AAGGAGGAG‑CTTTCTTCCGCTATGCCCGCGAACAAAACCGCCCGGGTAATA‑CGGTGGGGGGCATGGGGCCG‑GCGGGGACTTTTCGCCATCCGCCGACGGCCGGGCGCCACGGGGGCGATCTGGCCAtcggcaccgga                                                                                                                                                                 >  1:817784/1‑228 (MQ=255)
                                                                           aCCTTAAAAGCCAGCTTTGATGGTGAAGAATTACGCCGTTGTTACTCCATTTGCCGCAGCTATCTGCCTGGCGAAATTAGTGTGGCGG‑TG‑AAAGCCCCTG‑GAGGCGGGC‑GTTTCTCCCGCTATGCCCCCGCACACATCCGCCAGGGGATGA‑GGCTGGGGGGCATGGGGCCG‑CCGGGGCCTTTCCGCCATCACACGCAGGCCGGACGCCACGGGCCGCCTCTGGCAATTtcaaccgggac                                                                                                                                                               >  1:1057127/1‑231 (MQ=255)
                                                                            ccTTAAAAGCCAGCTTTGATGGTGAAGAATTACGCCGTTGTTACTCCATTTGCCGCAGCTATCTGCCTGGCGAAATTAGTGTGGCGG‑TG‑AAAGCCATTG‑AAGGCGGAC‑GTTTCTCCCGCTATGCCCGCGAACACATCCGCCAGGGTATGA‑CGCTGGAGGTCATGGTGCCG‑CAGGGGCATTTCGGCTATCAGCCGCAGGCCGAACGCCAGGGGCGCTATCTGGCAATTGCAGCAGGATc                                                                                                                                                               <  2:1064127/238‑1 (MQ=255)
                                                                            ccTTAAAAGCCAGCTTTGATGGTGAAGAATTACGCCGTTGTTACTCCATTTGCCGCAGCTATCTGCCTGGCGAAATTAGTGTGGCGG‑TG‑AAAGCCATTG‑AAGGCGGAC‑GTTTCTCCCGCTATGCCCGCGAACACATCCGCCAGGGTATGA‑CGCTGGAGGTCATGGTGCCG‑CAGGGGCATTTCGGCTATCAGCCGCAGGCCGAACGCCAGGGGCGCTATCTGGCAATTGCAGCAGGATc                                                                                                                                                               <  2:478676/238‑1 (MQ=255)
                                                                            ccTTAAAAGCCAGCTTTGATGGTGAAGAATTACGCAGTTGTTACTCCGTGTGCCGGAGCTATCTGCCTGGCGAAATTAGTGTGGCGG‑TG‑GAAGCCATTG‑AAGGCGGAC‑GTTTCTCCCGCTATGCCCGCGAACACATCCGCCAGGGTATGA‑CGCTGGAGGTCATGGTGCCG‑CAGGGGCATTTCGGCTATCAGCCGCAGGCCGAACGCCAGGGTCGCTATCTGGCAATTGCAGCAGGATCa                                                                                                                                                              <  1:1636493/239‑1 (MQ=255)
                                                                               tAAAAGCCAGCTTTGATGGTGAAGAATTACGCCGTTGTTACTCCATTTGCCGCAGCTATCTGCCTGGCGAAATTAGTGTGGCGG‑TG‑AAAGCCATTG‑AAAGCGGGC‑GTTTCTCCCCCTATTCCCGCGAACACATCCGCCCGGGGGTGA‑CGCTGGGGGGCCTGGTGCCG‑CCGGGGCATTTCCGCTATCCGCCCCAGGCCCGAGCCCGCGGGCGCCCTCTGGCCATTGCCGCCgggtacggt                                                                                                                                                           >  1:285769/1‑232 (MQ=255)
                                                                                 aaaGCCAGCTTTGATGGTGAAGAATTACGCCGTTGTTACTCCATTTGCCGCAGCTATCTGCCTGGCGAAATTAGTGTGGCGG‑TG‑AAAGCCATTG‑AAGGCGGAC‑GTTTCTCCCGCTATGCCCGCGAACACATCCGCCAGGGTATGA‑CGCTGGAGGTCATGGTGCCG‑CAGGGGCATTTCGGCTATCAGCCGCAGGCCGAACGCCAGGGGCGCTATCTGGCAATTGCAGCAGGATCAGGTAt                                                                                                                                                         <  2:1057127/239‑1 (MQ=255)
                                                                                   aGCCAGCTTTGATGGTGAAGAATTACGCCGTTGTTACTCCATTTGCCGCAGCTATCTGCCTGGCGAAATTAGTGTGGCGG‑TG‑AAAGCCATTG‑AAGGCGGAC‑GTTTCTCCCGCTATGCCCGCGAACACATCCGCCAGGGTATGA‑CGCTGGAGGTCATGGTGCCG‑CAGGGGCATTTCGGCTATCAGCCGCAGGCCGAACGCCAGGGGCGCTATCTGGCAATTGCAGCAGGATCAGGTATTa                                                                                                                                                       <  2:910700/239‑1 (MQ=255)
                                                                                           ttGATGGTGAAGAATTACGCCGTTGTTACTCCATTTGCCGCAGCTATCTGCCTGGCGAAATTAGTGTGGCGG‑TG‑AAAGCCATTG‑AAGGCGGAC‑GTTTCTCCCGCTATGCCCGCGAACACATCCGCCAGGGTATGA‑CGCTGGAGGTCATGGTGCCG‑CAGGGGCATTTCGGCTATCAGCCGCAGGCCGAACGCCAGGGGCGCTATCTGGCAATTGCAGCAGGATCAGGTATTACGCCAATg                                                                                                                                               <  2:625641/239‑1 (MQ=255)
                                                                                               tGGTGAAGAATTACGCCGTTGTTACTCCATTTGCCGCAGCTATCTGCCTTGCGAAATTAGTGTGGCGG‑TG‑AAAGCCATTG‑AAGGCGGAC‑GTTTCTCCCGCTATGCCCGCGAACACATCCGCCAGGGTATGA‑CGCTGGAGGTCATGGTGCCG‑CAGGGGCATTTCGGCTATCAGCCGCAGGCCGAACGCCAGGGGCGCTATCTGGCAATTGCAGCAGGATCAGGTATTACGCCAATGCTgg                                                                                                                                           <  2:1503960/239‑1 (MQ=255)
                                                                                                   gaagaaTTACGCCGTTGTTACTCCATTTGCCGCAGCTATCTGCCTGGCGAAATTAGTGTGGCGG‑TG‑AAAGCCATTG‑AAGGCGGAC‑GTTTCTCCCGCTATGCCCGCGAACACATCCGCCAGGGGATGA‑CGCTGGAGGTCATGGTGCCG‑CAGGGGCATTTCGGCTATCCGCCGCAGGCCGAACGCCCGGGGCGCTATCTGGCAATTGCAGCCGGATCAGGGATTACGCCAATGCTGGCGAt                                                                                                                                       >  2:473738/1‑239 (MQ=255)
                                                                                                         ttACGCCGTTGTTACACCATTTTCCGCAGCTATCTGCCTGGCGAAATTAGTGTGGCGG‑TG‑AAAGCCAGTG‑AAGGCGGAC‑GTTTCTCCCGCTATGCCCGCGAACACATCCGCCAGGGTATGA‑CGCTGGAGGTCATGGTGCCG‑CAGGGGCATTTCGGCTATCAGCCGCAGGCCGAACGCCAGGGGCGCTATCTGGCAATTGCAGCAGGATCAGGTATTACGCCAATGCTGGCGATTATCG‑c                                                                                                                                <  1:552412/239‑1 (MQ=255)
                                                                                                            cGCCGTTGTTACTCCATTTGCCGCAGCTATCTGCCTGGCGAAATTAGTGTGGCGGCTG‑TATCCCCTTG‑‑ACGCGGGC‑GTGTCCCCCCCTCTGCCCCCGGACACAACCCCCCGGGGTTGG‑CGCTGGGGGGCCCTGTGCCC‑CCCGGTCATTTCTGCTTTCACCCCCAGGCCGCACCCCCCGCGCGCCCACTGGCCATTTCCGCCGGAGCCGGTCTTACTCCCATTGTGGCGGTTTTCG‑cca                                                                                                                              >  1:1497986/1‑238 (MQ=255)
                                                                                                            cGCCGTTGTTACTCCATTTGCCGCAGCTATCTGCCTGGCGAAATTAGTGTGGCGG‑TG‑CAAACCCTTG‑GAGGCGGCC‑GTTTCTCCCGCCATTCCCCCCGACACCCCCGCCCGGGGCTGA‑CGCAGGAGGGCCTTGGGCCG‑GAGGGGCCTTTCCGCGATCAGCCGCCGGCCGAACCCCGAGGGAGGTATCCGGCCATTGCGACCGGAGCCGGTTTTAACCCAATGCCTGCGATGATcc‑ccc                                                                                                                              >  1:277851/1‑237 (MQ=255)
                                                                                                             gCCGTTGTTACTCCATTTGCCGCAGCTATCTGCCTGGCGAAATTAGTGTGGCGG‑TG‑AAAGCCATTG‑AAGGCGGAC‑GTTTCTCCCGCTATGCCCGCGAACACATCCGCCAGGGTATGA‑CGCTGGAGGTCATGGTGCCG‑CAGGGGCATTTCGGCTATCAGCCGCAGGCCGAACGCCAGGGGCGCTATCTGGCAATTGCAGCAGGATCAGGTATTACGCCAATGCTGGCGATTATCG‑ccacc                                                                                                                            <  1:530276/239‑1 (MQ=255)
                                                                                                                 ttgttACTCCATTTGCCGCAGCTATCTGCCTGGCGAAATTAGTGTGGCGG‑TG‑GAAGCCATTT‑AAGGCGGGC‑GTTTCTCCCGCTATGCCCGCGCACACAACCCCCAGGGGATGA‑CGCCGGGGGTCATGGGGTCG‑CCGGGGCATTTTCGCTATCCGCCGCAGGCCGAACGCCAGGGGCGCGATCTGGGAATTGCATCAGAGTCAGGGATTCACCCAATACGGGCGATTTTCC‑ccacccatt                                                                                                                        >  1:1464408/1‑235 (MQ=255)
                                                                                                                  tgttACTCCATTTGCCGCAGCTATCTGCCTGGCGAAATTAGTGTGGCGG‑TG‑AAAGCCATTG‑AAGGCGGAC‑GTTTCTCCCGCTATGCCCGCGAACACATCCGCCAGGGTATGA‑CGCTGGAGGTCATGGTGCCG‑CAGGGGCATTTCGGCTATCAGCCGCAGGCCGAACGCCAGGGGCGCTATCTGGCAATTGCAGCAGGATCAGGTATTACGCCAATg                                                                                                                                               <  2:169814/216‑1 (MQ=255)
                                                                                                                       cTCCATTTGCCGCAGCTATCTGCCTGGCGAAATTAGTGTGGCGG‑TG‑AAAGCCATTG‑AAGGCGGAC‑GTTTCTCCCGCTATGCCCGCGAACACATCCGCCAGGGTATGA‑CGCTGGAGGTCATGGTGCCG‑CAGGGGCATTTCGGCTATCAGCCGCAGGCCGAACGCCAGGGGCGCTATCTGGCAATTGCAGCAGGATCAGGTATTACGCCAATGCTGGCGATTATCG‑CCACCACTTTACaaa                                                                                                                  <  1:645582/239‑1 (MQ=255)
                                                                                                                            tttGCCGCAGCTATCTGCCTGGCGAAATTAGTGTGGCGG‑TG‑TAAGCCCTTG‑AAGGGGGGC‑GTTTCTCCCCCTCTGCCCGCGGAAACATCCCCCCAGGGATGA‑CGCTGGGGGGCCTGGGGCCG‑CAGGGGCATTTCGGCTATCAGCCGCAGGCCGAACGCCAGGGGGCCCTTCTGGCCACTGCCACAGGAGCAGCTGTTTAGCCCATGCTGGCGGGTTTCGCCCCCCACTTTCAAAAcgg                                                                                                               >  1:1135147/1‑236 (MQ=255)
                                                                                                                            tttGCCGCAGCTATCTGCCTGGCGAAATTAGTGTGGCGG‑TG‑AAAAACATTG‑AAGGCGGGC‑GGTTCTCCCGCCCTGCCCGCGGACACATACCCCCGGGGATGA‑CGCTGGGGGGCATGGGGGCG‑CCGGGGCCTTTCCGCCATCAGCCCCCGGCCGGACGCCCGGGGGGCGATCTCGGCATTGCCGCCGGAGCAGGGATTAAACCCATGCTGGCGGttttttttttcttttaaacatcttc                                                                                                               >  1:169814/1‑215 (MQ=255)
                                                                                                                                        aTCTGCCTGGCGAAATTAGTGTGGCGG‑TGAAAAACCATGG‑AA‑TCGGAA‑GGTTCTCCCCCCATGTCCCCCGACACATCCGCCCGGGTATGT‑CCCTGGAGGGCCTGGGGCCG‑CCGGGGGGTTTCGGCGATCAACCGCAGGCCGAACGCCATGGGGGCCATCTGGCAATTGCAGGCGGCAAAGGGGTTAGGCCCATGCGGGCGCTTTTCG‑CCACCACTTTACAAAACGAGCCCGAAAgggag                                                                                                 >  1:1286927/1‑235 (MQ=255)
                                                                                                                                         tCTGCCTGGCGAAATTAGTGTGACGG‑TG‑AAAGCCATTG‑AAGGCGGAC‑GTTTCTCCCGCTATGCCCGCGAACACATCCGCCAGGGTATGA‑CGCTGGAGGTCATGGTGCCG‑CAGGGGCATTTCGGCTATCAGCCGCAGGCCGAACGCCAGGGGCGCTATCTGGCAATTGCAGCAGGATCAGGTATTACGCCAATGCTGGCGATTATCG‑CCACCACTTTACAAACCGAGCCTGAAAGTCAGt                                                                                                <  1:1507702/239‑1 (MQ=255)
                                                                                                                                           tGCCTGGCGAAATTAGTGTGGCGG‑TG‑AAAGCCCTTG‑AAGGCGGGC‑GTTTTTCCCGCTATGCCCGCGCACACATCCCCCCGGGGATGA‑CGCTGGAGGGCATGGGTCCG‑CCGGGGCATTTCTGCTCTACGCCGCCGGCCGAACGCCCGGGGCGCTATCTTGCAATTTCCGCCGGCACAGGGAGTACGACCATGCTTGCGATTTATG‑CCCCCCCTTTACacaacccgcacgagaggcaatt                                                                                               >  1:1641889/1‑217 (MQ=255)
                                                                                                                                              cTGGCGAAATTAGTGTGGCGG‑TG‑AAAGCCATTG‑AAGGCGGAC‑GTTTCTCCCGCTATGCCCGCGAACACATCCGCCAGGGTATGA‑CGCTGGAGGTCATGGTGCCG‑CAGGGGCATTTCGGCTATCAGCCGCAGGCCGAACGCCAGGGGCGCTATCTGGCAATTGCAGCAGGATCAGGTATTACGCCAATGCTGGCGATTATCG‑CCACCACTTTACAAACCGAGCCTGAAAGTCAGTTCAcc                                                                                           <  2:757168/239‑1 (MQ=255)
                                                                                                                                              cTGGCGAAATTAGTGTGGCGG‑TG‑AAAGCCATTG‑AAGGCGGAC‑GTTTCTCCCGCTATGCCCGCGAACACATCCGCCAGGGTATGA‑CGCTGGAGGTCATGGTGCCG‑CAGGGGCATTTCGGCTATCAGCCGCAGGCCGAACGCCAGGGGCGCTATCTGGCAATTGCAGCAGGATCAGGTATTACGCCAATGCTGGCGATTATCG‑CCACCACTTTACAAACCGAGCCTGAAAGTCAGTTCAcc                                                                                           <  2:340563/239‑1 (MQ=255)
                                                                                                                                              cTGGCGAAATTAGTGTGGCGG‑TG‑AAAGCCATTG‑AAGGCGGAC‑GTTTCTCCCGCTATGCCCGCGAACACATCCGCCAGGGTATGA‑CGCTGGAGGTCATGGTGCCG‑CAGGGGCATTTCGGCTATCAGCCGCAGGCCGAACGCCAGGGGCGCTATCTGGCAATTGCAGCAGGATCAGGTATTACGCCAATGCTGGCGATTATCG‑CCACCACTTTACAAACCGAGCCTGAAAGTCAGTTCAcc                                                                                           <  2:897084/239‑1 (MQ=255)
                                                                                                                                              cTGGCGAAATTAGTGTGGCGG‑TG‑AAAGCCATTG‑AAGGCGGAC‑GTTTCTCCCGCTATGCCCGCGAACACATCCGCCAGGGTATGA‑CGCTGGAGGTCATGGTGCCG‑CAGGGGCATTTCGGCTATCAGCCGCAGGCCGAACGCCAGGGGCGCTATCTGGCAATTGCAGCAGGATCAGGTATTACGCCAATGCTGGCGATTATCG‑CCACCACTTTACAAACCGAGCCTGAAAGTCAGTTCAcc                                                                                           <  1:23539/239‑1 (MQ=255)
                                                                                                                                                 gCGAAATTAGTGTGGCGG‑TG‑AAAGCCATTG‑AAGGCGGAC‑GTTTCTCCCGCTATGCCCGCGAACACATCCGCCAGGGTATGA‑CGCTGGAGGTCATGGTGCCG‑CAGGGGCATTTCGGCTATCAGCCGCAGGCCGAACGCCAGGGGCGCTATCTGGCAATTgcagc                                                                                                                                                                     <  2:1670207/163‑1 (MQ=255)
                                                                                                                                                  cGAAATTAGTGTGGCGG‑TG‑AAAAACATTT‑AAAGCGGGC‑GTTTCTCCCCCTATGCCCGCGAACACAACCGCCAGGGGATGA‑CGCTGGAGGGCCTGGTGCCG‑CAGGGGCATTTCGGCTATCAGCCGCAGGCCGCACGCCAGGGGCGCCATCTGGGCATTTCAGCAGGGACAGGGATTTCGCCCATGCTGGCGGTTATCG‑CCACCACTTTATCAACCCGGGCTGGAAGTCAGGTTACCCt                                                                                         >  1:1488549/1‑237 (MQ=255)
                                                                                                                                                     aaTTAGTGTGGCGG‑TG‑AAAGCCATTG‑AAGGCGGAC‑GTTTCTCCCGCTATGCCCGCGAACACATCCGCCAGGGTATGA‑CGCTGGAGGTCATGGTGCCG‑CAGGGGCATTTCGGCTATCAGCCGCAGGCCGAACGCCAGGGGCGCTATCTGGCAATTGCAGCAGGATCAGGTATTACGCCAATGCTGGCGATTATCG‑CCACCACTTTACAAACCGAGCCTGAAAGTCAGTTCACCCTGATc                                                                                     <  2:462564/238‑1 (MQ=255)
                                                                                                                                                     aaTTAGTGTGGCGG‑TG‑AAAGCCATTG‑AAGGCGGAC‑GTTTCTCCCGCTATGCCCGCGAACACATCCGCCAGGGTATGA‑CGCTGGAGGTCATGGTGCCG‑CAGGGGCATTTCGGCTATCAGCCGCAGGCCGAACGCCAGGGGCGCTATCTGGCAATTGCAGCAGGATCAGGTATTACGCCAATGCTGGCGATTATCG‑CCACCACTTTACAAACCGAGCCTGAAAGTCAGTTCACCCTGATc                                                                                     <  2:129794/238‑1 (MQ=255)
                                                                                                                                                       ttAGTGTGGCGG‑TG‑AAAGCCATTG‑AAGGCGGAC‑GTTTCTCCCCCCATGCCCCCGGACACACCCCCCAGGGGATGA‑CGCCGGGGGTACAGGGGTCG‑GAGGGGGAGTTTGGCCATCTTCCGCGGGCCGGACGCCAGGGGCGGCCTTTGGCAATTGGCTCAGGGTCAGGTATTACGCCCATGTCGGCGGTTATCC‑GCCCCACTTTTCCAACCCAGCATGAACGCCAGTTctacccctcctt                                                                                   >  1:1149418/1‑227 (MQ=255)
                                                                                                                                                            gtgGCGG‑TG‑AAGGCAATTG‑AAGGCGGGC‑GTTTCTCCCGCTATGCCCGCGAACACATCCGCCAGGGTATGA‑CGCTGGAGGTCATGGCGCCG‑CAGGGGCATTTCGGCTAGCAGCCGCAGGCCGAACGCCAGAGGCGCTATCTGGCAATTGCAGCAGGATCAGGTATTCCGCCAATGCTGGCTATTATCG‑CCACAACTTTACAAACCGAGCCTGAAAGTCAGTTCTCCCTGATCTACGGTaa                                                                             <  1:292991/239‑1 (MQ=255)
                                                                                                                                                            gtgGCGG‑TG‑AAAGCCATTG‑AAGGCGGAC‑GTTTCTCCCGCTATGCCCGCGAACACATCCGCCAGGGTATGA‑CGCTGGAGGTCATGGTGCCG‑CAGGGGCATTTCGGCTATCAGCCGCAGGCCGAACGCCAGGGGCGCTATCTGGCAATTGCAGCAGGATCAGGTATTACGCCAATGCTGGCGATTATCG‑CCACCACTTTACAAACCGAGCCTGAAAGTCAGTTCACCCTGATCTACGGTaa                                                                             <  2:1135147/239‑1 (MQ=255)
                                                                                                                                                            gtgGCGG‑TG‑AAAGCCATTG‑AAGGCGGAC‑GTTTCTCCCGCTATGCCCGCGAACACATCCGCCAGGGTATGA‑CGCTGGAGGTCATGGTGCCG‑CAGGGGCATTTCGGCTATCAGCCGCAGGCCGAACGCCAGGGGCGCTATCTGGCAATTGCAGCAGGATCAGGTATTACGCCAATGCTGGCGATTATCG‑CCACCACTTTACAAACCGAGCCTGAAAGTCAGTTCACCCTGATCTACGGTaa                                                                             <  2:1641889/239‑1 (MQ=255)
                                                                                                                                                            gtgGCGG‑TG‑AAAGCCATTG‑AAGGCGGAC‑GTATCTCCCGCTATGCCCGCGAACACATCCGCCAGGGTATGA‑CGCTGGAGGTCATGGTGCCG‑CAGGGGCATTTCGGCTATCAGCCGCAGGCCGAACGCCAGGGGCGCTATCTGGCAATTGCAGCAGGATCAGGTATTACGCCAATGCTGGCGATTATCG‑CCACCACTTTACAAACCGAGCCTGAAAGTCAGTTCACCCTGATCTACGGt                                                                               <  2:1129427/237‑1 (MQ=255)
                                                                                                                                                             tgGCGG‑TG‑AAAGCCATTG‑AAGGCGGAC‑GTTTCTCCCGCTATGCCCGCGAACACATCCGCCAGGGTATGA‑CGCTGGAGGTCATGGTGCCG‑CAGGGGCATTTCGGCTATCAGCCGCAGGCCGAACGCCAGGGGCGCTATCTGGCAATTGCAGCAGGATCAGGTATTACGCCAATGCTGGCGATTATCG‑CCACCACTTTACAAACCGAGCCTGAAAGTCAGTTCACCCTGATCTACGGTaa                                                                             <  2:78038/238‑1 (MQ=255)
                                                                                                                                                             tgGCGG‑GG‑AAAGCCATTG‑AAGGCGGAC‑GTTTCTCCCGCTATGCCCGCGAACACATCCGCCAGGGTATGA‑CGCTGGAGGTCATGGTGCCG‑CAGGGGCATTTCGGCTATCAGCCGCAGGCCGAACGCCAGGGGCGCTATCTGGCAATTGCAGCAGGATCAGGTATTACGCCAATGCTGGCGATTATCG‑CCACCACTTTACAAACCGAGCCTGAAAGTCAGTTCACCCTGATCTACGGTaa                                                                             <  1:1692459/238‑1 (MQ=255)
                                                                                                                                                                        aaGCCATTG‑AAGGCGGAC‑GTTTCTCCCGCTATGCCCGCGAACACATCCGCCAGGGTATGA‑CGCTGGAGGTCATGGTGCCG‑CAGGGGCATTTCGGCTATCAGCCGCAGGCCGAACGCCAGGGGCGCTATCTGGCAATTGCAGCAGGATCAGGTATTACGCCAATGCTGGCGATTATCG‑CCACCACTTTACAAACCGAGCCTGAAAGTCAGTTCACCCTGATCTACGGTAACCGTAccagc                                                                   <  2:1497986/239‑1 (MQ=255)
                                                                                                                                                                        aaGCCATTG‑AAGGCGGAC‑GTTTCTCCCGCTATGCCCGCGAACACATCCGCCAGGGTATGA‑CGCTGGAGGTCATGGTGCCG‑CAGGGGCATTTCGGCTATCAGCCGCAGGCCGAACGCCAGGGGCGCTATCTGGCAATTGCAGCAGGATCAGGTATTACGCCAATGCTGGCGATTATCG‑CCACCACTTTACAAACCGAGCCTGAAAGTCAGTTCACCCTGATCTACGGTAACCGTAccagc                                                                   <  2:1534083/239‑1 (MQ=255)
                                                                                                                                                                         aGCCATTG‑AAGGCGGAC‑GTTTCTCCCGCTATGCCCGCGAACACATCCGCCAGGGTATGA‑CGCTGGAGGTCATGGTGCCG‑CGGGGGCATTTCGGCTATCAGCCGCAGGCCGAACGCCAGGGGCGCTATCTGGCAATTGCAGCAGGATCAGGTATTACGCCAATGCTGGCGATTATCG‑CCACCACTTTACAAACCGAGCCTGAAAGTCAGTTCACCCTGATCTACGGTAACCGTAccagcc                                                                  <  2:855480/239‑1 (MQ=255)
                                                                                                                                                                            cATTG‑AAGGCGGAC‑GTTTCTCCCGCTATGCCCGCGAACACATCCGCCAGGGTATGA‑CGCTGGAGGTCATGGTGCCG‑CAGGGGCATTTCGGCTATCAGCCGCAGGCCGAACGCCAGGGGCGCTATCTGGCAATTGCAGCAGGATCAGGTATTACGCCAATGCTGGCGATTATCG‑CCACCACTTTACAAACCGAGCCTGAAAGTCAGTTCACCCTGATCTACGGTAACCGTAccagcca                                                                 <  2:505237/237‑1 (MQ=255)
                                                                                                                                                                              ttG‑AAGGCGGAC‑GTTTCTCCCGCTATGCCCGCGAACACATCCGCCAGGGTATGA‑CGCTGGAGGTCATGGTGCCG‑CAGGGGCATTTCGGCTATCAGCCGCAGGCCGAACGCCAGGGGCGCTATCTGGCAATTGCAGCAGGATCAGGTATTACGCCAATGCTGGCGATTATCG‑CCACCACTTTACAAACCGAGCCTGAAAGTCAGTTCACCCTGATCT‑CGGTAACCGTACCAGCCAGAGCa                                                            >  1:432781/1‑239 (MQ=255)
                                                                                                                                                                               tG‑AAGGCGGAC‑GTTTCTCCCGCTATGCCCGCGAACACATCCGCCAGGGTATGA‑CGCTGGAGGTCATGGTGCCG‑CAGGGGCATTTCGGCTATCAGCCGCAGGCCGAACGCCAGGGGCGCTATCTGGCAATTGCAGCAGGATCAGGTATTACGCCAATGCTGGCGATTATCG‑CCACCACTTTACAAACCGAGCCTGAAGGTCAGTTCCCCCTGATCTACGGTAACCGTACCAGCCAGAGCa                                                            >  1:569899/1‑239 (MQ=255)
                                                                                                                                                                               tG‑AAGGCGGAC‑GTTTCTCCCGCTATGCCCGCGAACACATCCGCCAGGGTATGA‑CGCTGGAGGTCATGGTGCCG‑CAGGGGCATTTCAGCTATCAGCCGCAGGCCGAACGCCAGGGGCGCTATCTGGCAATTGCAGCAGGATCAGGTATTACGCCAATGCTGGCGATTATCG‑CCACCACTTTACAAACCGAGCCTGAAAGTCAGTTCACCCTGATCTACGGTAACCGTACCAGCCAGAGCa                                                            <  1:1526700/239‑1 (MQ=255)
                                                                                                                                                                               tG‑AAGGCGGAC‑GTTTCTCCCGCTATGCCCGCGAACACATCCGCAAGGGTATGA‑CGCTGGAGGTCATGGTGCCG‑CAGGGGCATTTCGGCTATCAGCCGCAGGCCGAACGCCAGGGGCGCTATCTGGCAATTGCAGCAGGATCAGGTATTACGCCAATGCTGGCGATTATCG‑CCACCACTTTACAAACCGAGCCTGAAAGTCAGTTCACCCTGATCTACGGTAACCGTACCAGCCAGAGCa                                                            <  2:1240993/239‑1 (MQ=255)
                                                                                                                                                                                                ctcCGGCAATGCCCAGGAACACATGCGGCAGGTTATGA‑CGCGGGAGTTCATGGTGCCG‑CAGGGGCATTTCGGCTATCAGCCGCAGGCCGAACGCCTGGGGCGCTATCTGGCAATTGCAGCAGGATCAGGTATTACGCCAATGCTGGCGATTGTCG‑CCTCCACTTTACAAACCGAGCCTGAAAGTCAGTTCACCCTGATCTACGGTAACCGTACCAGCCAGAGCATGATGTTTCGCCAgg                                             <  1:872448/239‑1 (MQ=255)
                                                                                                                                                                                                 tcCCGCTATGCCCGCGAACACATCCGCCAGGGTATGA‑CGCTGGAGGTCATGGTGCCG‑CAGGGGCATTTCGGCTATCAGCCGCAGGCCGAACGCCAGGGGCGCTATCTGGCAATTGCAGCAGGATCAGGTATTACGCCAATGCTGGCGATTATCG‑CCACCACTTTACAAACCGAGCCTGAAAGTCAGTTCACCCTGATCTACGGTAACCGTACCAGCCAGAGCATGATGTTTCGCCAGGc                                            <  2:1448970/239‑1 (MQ=255)
                                                                                                                                                                                                         tGCCCGCGAACACATCCGCCAGGGTATGA‑CGCTGGAGGTCATGGTGCCG‑CAGGGGCATTTCGGCTATCAGCCGCAGGCCGAACGCCAGGGGCGCTATCTGGCAATTGCAGCAGGATCAGGTATTACGCCAATGCTGGCGATTATCG‑CCACCACTTTACAAACCGAGCCTGAAAGTCAGTTCACCCTGATCTACGGTAACCGTACCAGCCAGAGCATGATGTTTCGCCAGGCACTGGCAg                                    <  2:1439888/239‑1 (MQ=255)
                                                                                                                                                                                                                  acacATGCGAGAGGGTATGG‑CGCTGGAGGTCATGGTGCCG‑CAGGGGCATTTCGGCTATCAGCCGCAGGCCGAACGCAAGGGGCGCTATCTGGCAATTGCAGCAGGATAAGGTATTACGCCAATGCTGGCGATTATCG‑CCACCACTTTACAAACCGAGCCTGAAAGTCAGTTCACCCTGATCTACGGTAACCGTACCAGCCAGAGCATGATGTTTCGCCAGGCACTGGCAGACCTGaaa                            <  1:274978/238‑1 (MQ=255)
                                                                                                                                                                                                                  acacATCCGCCAGGGTATGA‑CGCTGGAGGTCATGGTGCCG‑CAGGGGCATTTCGGCTATCAGCCGCAGGCCGAACGCCAGGGGCGCTATCTGGCAATTGCAGCAGGATCAGGTATTACGCCAATGCTGGCGATTATCG‑CCACCACTTTACAAACCGAGCCTGAAAGTCAGTTCACCCTGATCTACGGTAACCGTACCAGCCAGAGCATGATGTTTCGCCAGGCACTGGCAGACCTGaaa                            <  1:633089/238‑1 (MQ=255)
                                                                                                                                                                                                                   cacaTCCGCCAGGGTATGA‑CGCTGGAGGTCATGGTGCCG‑CAGGGGCATTTCGGCTATCAGCCGCAGGCCGAACGCCAGGGGCGCTATCTGGCAATTGCAGCAGGATCAGGTATTACGCCAATGCTGGCGATTATCG‑CCACCACTTTACAAACCGAGCCTGAAAGTCAGTTCACCCTGATCTACGGTAACCGTACCAGCCAGAGCATGATGTTTCGCCAGGCACTGGCAGACCTGAAAGa                          <  2:216600/239‑1 (MQ=255)
                                                                                                                                                                                                                   cacaTCCGCCAGGGTATGA‑CGCTGGAGGTCATGGTGCCG‑CAGGGGCATTTCGGCTATCAGCCGCAGGCCGAACGACAGGGGCGCTATCTGGCAATTGCAGCAGGATCAGGTATTACGCCAATGCTGGCGATTATCG‑CCACCACTTTACAAACCGAGCCTGAAAGTCAGTTCACCCTGATCTACGGTAACCGTACCAGCCAGAGCATGATGTTTCGCCAGGCACTGGCAGACCTGAAAGa                          <  2:1070251/239‑1 (MQ=255)
                                                                                                                                                                                                                      aTCCGCCAGGGTATGA‑CGCTGGAGGTCATGGTGCCG‑CAGGGGCATTTCGGCTATCAGCCGCAGGCCGAACGCCAGGGGCGCTATCTGGCAATTGCAGCAGGATCAGGTATTACGCCAATGCTGGCGATTATCG‑CCACCACTTTACAAACCGAGCCTGAAAGTCAGTTCACCCTGATCTACGGTAACCGTACCAGCCAGAGCATGATGTTTCGCCAGGCACTGGCAGACCTGAAAGACaa                       >  2:1590772/1‑239 (MQ=255)
                                                                                                                                                                                                                       tCCGCCAGGGTATGA‑CGCTGGAGGTCATGGTGCCG‑CAGGGGCATTTCGGCTATCAGCCGCAGGCCGAACGCCAGGGGCGCTATCTGGCAATTGCAGCAGGATCAGGTATTACGCCAATGCTGGCGATTATCG‑CCACCACTTTACAAACCGAGCCTGAAAGTCAGTTCACCCTGATCTACGGTAACCGTACCAGCCAGAGCATGATGTTTCGCCAGGCACTGGCAGACCTGAAAGACaaa                      <  2:670593/239‑1 (MQ=255)
                                                                                                                                                                                                                                gTATGA‑CGCTGGAGGTCATGGTGCCG‑CAGGGGCATTTCGGCTATCAGCCGCAGGCCGAACGCCAGGGGCGCTATCTGGCAATTGCAGCAGGATCAGGTATTACGCCAATGCTGGCGATTATCG‑CCACCACTTTACAAACCGAGCCTGAAAGTCAGTTCACCCTGATCTACGGTAACCGTACCAGCCAGAGCATGATGTTTCGCCAGGCACTGGCAGACCTGAAAGACaaa                      <  2:1166290/230‑1 (MQ=255)
                                                                                                                                                                                                                                gTATGA‑CGCTGGAGGTCATGGTGCCG‑CAGGGGCATTTCGGCTATCAGCCGCAGGCCGAACGCCAGGGGCGCTATCTGGCAATTGCAGCAGGATCAGGTATTACGCCAATGCTGGCGATTATCG‑CCACCACTTTACAAACCGAGCCTGAAAGTCAGTTCACCCTGATCTACGGTAACCGTACCAGCCAGAGCATGATGTTTCGCCAGGCACTGGCAGACCTGAAAGACaaa                      >  1:1166290/1‑230 (MQ=255)
                                                                                                                                                                                                                                gTATGA‑CGCTGGAGGTCATGGTGCCG‑CAGGGGCATTTCGGCTATCAGCCGCAGGCCGAACGCCAGGGGCGCTATCTGGCAATTGCAGCAGGATCAGGTATTACGCCAATGCTGGCGATTATCG‑CCACCACTTTACAAACCGAGCCTGAAAGTCAGTTCACCCTGATCTACGGTAACCGTACCAGCCAGAGCATGATGTTTCGCCAGGCACTGGCAGACCTGAAAGACAAATATCCt                <  1:1281106/236‑1 (MQ=255)
                                                                                                                                                                                                                                  aTGA‑CGCTGGAGGTCATGGTGCCG‑CAGGGGCATTTCGGCTATCAGCCGCAGGCCGAACGCCAGGGGCGCTATCTGGCAATTGCAGCAGGATCAGGTATTACGCCAATGCTGGCGATTATCG‑CCACCACTTTACAAACCGAGCCTGAAAGTCAGTTCACCCTGATCTACGGTAACCGTACCAGCCAGAGCATGATGTTTCGCCAGGCACTGGCAGACCTGAAAGACAAATATCCTCAGc            <  2:358381/238‑1 (MQ=255)
                                                                                                                                                                                                                                   tGA‑CGCTGGAGGTCATGGTGCCG‑CAGGGGCATTTCGGCTATCAGCCGCAGGCCGAACGCCAGGGGCGCTATCTGGCAATTGCAGCAGGATCAGGTATTACGCCAATGCTGGCGATTATCG‑CCACCACTTTACAAACCGAGCCTGAAAGTCAGTTCACCCTGATCTACGGTAACCGTACCAGCCAGAGCATGATGTTTCGCCAGGCACTGGCAGACCTGAAAGACAAATATCCTCAGCGt          >  1:696073/1‑239 (MQ=255)
                                                                                                                                                                                                                                    gA‑CGCTGGAGGTCATGGTGCCG‑CAGGGGCATTTCGGCTATCAGCCGCAGGCCGAACGCCAGGGGCGCTATCTGGCAATTGCAGCAGGATCAGGTATTACGCCAATGCTGGCGATTATCG‑CCACCACTTTACAAACCGAGCCTGAAAGTCAGTTCACCCTGATCTACGGTAACCGTACCAGCCAGAGCATGATGTTTCGCCAGGCACTGGCAGACCTGAAAGACAAATATCCTCAGCGtt         >  2:355363/1‑239 (MQ=255)
                                                                                                                                                                                                                                    gA‑CGCTGGAGGTCATGGTGCCG‑CAGGGGCATTTCGGCTATCAGCCGCAGGCCGAACGCCAGGGGCGCTATCTGGCAATTGCAGCAGGATCAGGTATTACGCCAATGCTGGCGATTATCG‑CCACCACTTTACAAACCGAGCCTGAAAGTCAGTTCACCCTGATCTACGGTAACCGTACCAGCCAGAGCATGATGTTTCGCCAGGCACTGGCAGACCTGAAAGACAAATATCCTCAGCGtt         >  1:1217838/1‑239 (MQ=255)
                                                                                                                                                                                                                                       cGCTGGAGGTCATGGTGCCG‑CAGGGGCATTTCGGCTATCAGCCGCAGGCCGAACGCCAGGGGCGCTATCTGGCAATTGCAGCAGGATCAGGTATTACGCCAATGCTGGCGATTATCG‑CCACCACTTTACAAACCGAGCCTGAAAGTCAGTTCACCCTGATCT‑CGGTAACCGTACCAGCCAGAGCATGATGTTTCGCCAGGCACTGGCAGACCTGAAAGACAAATATCCTCAGCGTTTa       <  2:432781/238‑1 (MQ=255)
                                                                                                                                                                                                                                          tGGAGGTCATGGTGCCG‑CAGGGGCATTTCGGCTATCAGCCGCAGGCCGAACGCCAGGGGCGCTATCTGGCAATTGCAGCAGGATCAGGTATTACGCCAATGCTGGCGATTATCG‑CCACCACTTTACAAACCGAGCCTGAAAGTCAGTTCACCCTGATCTACGGTAACCGTACCAGCCAGAGCATGATGTTTCGCCAGGCACTGGCCGACCTGAAAGACAAATATCCTCAGCGTTTACAg    >  1:705568/1‑239 (MQ=255)
                                                                                                                                                                                                                                          tGGAGGTCATGGTGCCG‑CAGGGGCATTTCGGCTATCAGCCGCAGGCCGAACGCCAGGGGCGCTATCTGGCAATTGCAGCAGGATCAGGTATTACGCCAATGCTGGCGATTATCG‑CCACCACTTTACAAACCGAGCCTGAAAGTCAGTTCACCCTGATCTACGGTAACCGTACCAGCCAGAGCATGATGTTTCGCCAGGCACTGGCAGACCTGAAAGACAAATATCCTCAGCGTTTACAg    <  2:611107/239‑1 (MQ=255)
                                                                                                                                                                                                                                           ggAGGTCATGGTGCCG‑CAGGGGCATTTCGGCTATCAGCCGCAGGCCGAACGCCAGGGGCGCTATCTGGCAATTGCAGCAGGATCAGGTATTACGCCAATGCTGGCGATTATCG‑CCACCACTTTACAAACCGAGCCTGAAAGTCAGTTCACCCTGATCTACGGTAACCGTACCAGCCAGAGCATGATGTTTCGCCAGGCACTGGCAGACCTGAAAGACAAATATCCTCAGCGTTTACAgt   >  2:646648/1‑239 (MQ=255)
                                                                                                                                                                                                                                            gAGGTCATGGTGCCG‑CAGGGGCATTTCGGCTATCAGCCGCAGGCCGAACGCCAGGGGCGCTATCTGGCAATTGCAGCAGGATCAGGTATTACGCCAATGCTGGCGATTATCG‑CCACCACTTTACAACCCGAGCCTGAACGTCAGTTCACCCTGATCTCCGGTAACCGCACCAGCCAGAGCCTGATATTTCGCCAGGCACTGGCAGACCTGAAAGACAAATACCCTCCTCGTTTACAgtt  >  1:1017428/1‑239 (MQ=255)
                                                                                                                                                                                                                                                |                                                                                                                                                                                                                                            
GATGCGGTGACCATTACCTTTGCGGTGCCCCAGCCTTTGCAGGAGGCGTATCGCTTTCGCCCCGGTCAACATTTGACCTTAAAAGCCAGCTTTGATGGTGAAGAATTACGCCGTTGTTACTCCATTTGCCGCAGCTATCTGCCTGGCGAAATTAGTGTGGCGG‑TG‑AAAGCCATTG‑AAGGCGGAC‑GTTTCTCCCGCTATGCCCGCGAACACATCCGCCAGGGTATGA‑CGCTGGAGGTCATGGTGCCG‑CAGGGGCATTTCGGCTATCAGCCGCAGGCCGAACGCCAGGGGCGCTATCTGGCAATTGCAGCAGGATCAGGTATTACGCCAATGCTGGCGATTATCG‑CCACCACTTTACAAACCGAGCCTGAAAGTCAGTTCACCCTGATCTACGGTAACCGTACCAGCCAGAGCATGATGTTTCGCCAGGCACTGGCAGACCTGAAAGACAAATATCCTCAGCGTTTACAGTT  >  NC_000913/1456481‑1456950

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑

GATK/CNVnator alignment

N/A