Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A7 F28 I0 R1 140 172.9 3477528 97.9% 3404499 226.2

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation freq annotation gene description
RA NC_000913 3,782,886 G→C 11.1% R259G (CGT→GGT)  gpsA ← glycerol‑3‑phosphate dehydrogenase (NAD+)

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0009133,782,8860GC11.1% 247.1 / 4.5 115R259G (CGT→GGT) gpsAglycerol‑3‑phosphate dehydrogenase (NAD+)
Reads supporting (aligned to +/- strand):  ref base G (29/70);  new base C (11/3);  total (41/74)
Fisher's exact test for biased strand distribution p-value = 5.81e-04
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 6.61e-01

Only 100 of 120 total aligned reads displayed.

TGCTGCGCTCGTCCTTGCGTGCACGACCTAGTAAAGTCAATGCTGCCTCGCGCGCGTTTTTTCCGCAATATAATACTTGATAAATTTCCTCGGTTATTG‑GCATTTCAACGCCGAAGCGATGCGCCAGTTCGCGGACTTCTTTCGTATTGCGGTAGCCTTCCACCACCTGACCAATCTTCTCCTGCGCGCTTTGTACATCCATGCCCTGACCGAGCATCATGCCAAAACGGCG‑GTTACGCGACTG‑GTTGTCGGTACAGGTAAGCACCAGATCGCCAAGCCCCGCCATGCCCATAAAGGTGGCAGGGTCGGCACCCAGCGCCGCACCAAGACGCGACATTTCAGCCAG‑CCCACGGGTGATCAGCGCCGTACGCGCATTCGCA‑CCAAAACCGATACCGTCGGACATCCCCGCACCAATGGCAAT‑AACGTTTTTCACCGCGCCGCCAAGCTGCACGCCAATGAAATCCGGATTGCTGTA  >  NC_000913/3782649‑3783123
                                                                                                                                                                                                                                               |                                                                                                                                                                                                                                                 
tgctgcGCTCGTCCTTGCGTGCACGACCTAGTAAAGTCAATGCTGCCTCGCGCGCGTTTTTTCCGCAATATAATACTTGATAAATTTCCTCGGTTATTG‑GCATTTCAACGCCGAAGCGATGCGCCAGTTCGCGGACTTCTTTCGTATTGCGGTAGCCTTCCACCACCTGACCAATCTTCTCCTGCGCGCTTTGTACATCCATGCCCTGACCGAGCATCATGCCAAAACGGCG‑GTTAcg                                                                                                                                                                                                                                                   >  2:1373151/1‑238 (MQ=255)
tgctgcGCTCGTCCTTGCGTGCACGACCTAGTAAAGTCAATGCTGCCTCGCGCGCGTTTTTTCCGCAATATAATACTTGATAAATTTCCTCGGTTATTG‑GCATTTCAACGCCGAAGCGATGCGCCAGTTCGCGGACTTCTTTCGTATTGCGGTAGCCTTCCACCACCTGACCAATCTTCTCCTGCGCGCTTTGTACATCCATGCCCTGACCGAGCATCATGCCAAAACGGCG‑GTTAagc                                                                                                                                                                                                                                                  >  2:107739/1‑239 (MQ=255)
tgctgcGCTCGTCCTTGCGTGCACGACCTAGTAAAGTCAATGCTGCCTCGCGCGCGTTTTTTCCGCAATATAATACTTGATAAATTTCCTCGGTTATTG‑GCATTTCAACGCCGAAGCGATGCGCCAGTTCGCGGACTTCTTTCGTATTGCGGTAGCCTTCCACCACCTGACCAATCTTCTCCTGCGCGCTTTGTACATCCATGCCCTGACCGAGCATCATGCCAAAACGGCG‑GGTAcgc                                                                                                                                                                                                                                                  >  2:1297952/1‑239 (MQ=255)
      tcTCGTCCTTGCGTGCCCGCCCTAGTAAAGGCAATGCAGCCTCGCGAGCGTTTTTTCCGCAATATAATACTTGATAACTTGCCTCGGTTATTG‑GCATTTCAACGCCGAAGCGATGCGCCAGTTCGCGGTCTTCTTTCGTATTGCGGTAGCCTTCCACCACCTGACCAATCTTCGCCTGCGCGCGTTGTACATCCATGCCCTGACCGAGCATCATGACAAAACGGCG‑GTTACGCGACTg                                                                                                                                                                                                                                             <  1:179230/237‑1 (MQ=255)
      gcTCGTCCTTGCGTGCACGACCTAGTAAAGTCAATGCTGCCTCGCGCGCGTTTTTTCCGCAATATAATACTTGATAAATTTCCTCGGTTATTG‑GCATTTCAACGCCGAAGCGATGCGCCAGTTCGCGGACTTCTTTCGTATTGCGGTAGCCTTCCACCACCTGACCAATCTTCTCCTGCGCGCTTTGTACATCCATGCCCTGACCGAGCATCATGCCAAAACGGCG‑GTTACGCGACTg                                                                                                                                                                                                                                             <  2:461784/238‑1 (MQ=255)
        tCGTCCTTGCGTGCACGACCTAGTAAAGTCAATGCTGCCTCGCGCGCGTTTTTTCCGCAATATAATACTTGATAAATTTCCTCGGTTATTG‑GCATTTCAACGCCGAAGCGATGCGCCAGTTCGCGGACTTCTTTCGTATTGCGGTAGCCTTCCACCACCTGACCAATCTTCTCCTGCGCGCTTTGTACATCCATGCCCTGACCGAGCATCATGCCAAAACGGCG‑GTTACGCGACTG‑Gtt                                                                                                                                                                                                                                         <  1:157024/239‑1 (MQ=255)
          ggccTTGCGTGCACGACCTAATAAAGGCAATGCTGCCTCGCGCGCGTTGTTTCCGCAATATAATACTTGATAAATTTCCTCGGTTATTG‑GCATTTCAACGCCGAAGCGATGCGCCAGTTCGCGGACTTCTTTCGTATTGCGGTAGCCTTCCACCACCTGACCAATCTTCTCCTGCGCGCTTTGTACATCCATGCCCTGACCGAGCATCATGCCAAAACGGCG‑GTTACGCGACTG‑GTTGt                                                                                                                                                                                                                                       <  1:28466/237‑1 (MQ=255)
          gTCCTTGCGTTCTCGACCTAGTAAAGTCAATGCTGCCTCGCGCGCGTTTTTTCCGCAATATAATACTTGATAAATTTCCTCGGTTATTG‑GCATTTCACCGCCGAAGCGATGCGGCAGTTCGCGGACTTCTTTCGTATTGCGGTAGCCTTCCACCACCTGACCAATCTTCTCCTGCGCGCTTTGTACATCCATGCCCTGACCGAGCATCATGCCAAAACGGCG‑GTTCCGCGACTG‑GTTGt                                                                                                                                                                                                                                       <  1:285537/239‑1 (MQ=255)
          gTCCTTGCGTGCACGACCTAGTAAAGTCAATGCTGCCTCGCGCGCGTTTTTTCCGCAATATAATACTTGATAAATTTCCTCGGTTATTG‑GCATTTCAACGCCGAAGCGATGCGCCAGTTCGCGGACTTCTTTCGTAATGCGGTAGCCTTCCACCACCTGACCAATCTTCTCCTGCGCGCTTTGTACATCCATGCCCTGACCGAGCATCATGCCAAAACGGCG‑GTTACGCGACTG‑GTTGt                                                                                                                                                                                                                                       <  2:151932/239‑1 (MQ=255)
           tCCTGGCATGCACGTCCGACGTAAGTCAAGCCGGCCTCGCGCGCGTTGTTTCCGCAATATAATACTTGTTAAACTGCCTCGGTTCTGT‑GCATTTCACCGCGTAATCGATACGCAAGTTCGCGGACTTCTTTCGTATTTCGGCAGCCTTCCACCACCTTACCAATCTTCTCCTGCGTGCTTTTTACCTCCATGCCCTGACCGAGCATCATGCCAAAGCGGCG‑GGTTCTCGACTG‑GTTGt                                                                                                                                                                                                                                       <  1:1596591/238‑1 (MQ=255)
               tGCGTGCACGACCTAGTAAAGTCAATGCTGCCTCGCGCGCGTTTTTTCCGCAATATAATACTTGATAAATTTCCTCGGTTATTG‑GCATTTCAACGCCGAAGCGATGCGCCAGTTCGCGGACTTCTTTCGTATTGCGGTAGCCTTCCACCACCTGACCAATCTTCTCCTGCGCGCTTTGTACATCCATGCCCTGACCGAGCATCATGCCAAAACGGCG‑GTTACGCGACTG‑GTTGTCGGt                                                                                                                                                                                                                                   >  2:283016/1‑238 (MQ=255)
               tGCGTGCACGACCTAGTAAAGTCAATGCTGCCTCGCGCGCGTTTTTTCCGCAATATAATACTTGATAAATTTCCTCGGTTATTG‑GCATTTCAACGCCGAAGCGATGCGCCAGTTCGCGGACTTCTTTCGTATTGCGGTAGCCTTCCACCACCTGACCAATCTTCTCCTGCGCGCTTTGTACATCCATGCCCTGACCGAGCATCATGCCAAAACGGCG‑GTTACGCGACTG‑GTTGTCGGTa                                                                                                                                                                                                                                  <  2:1520809/239‑1 (MQ=255)
               tGCGTGCACGACCTAGTAAAGTCAATGCTGCCTCGCGCGCGTTTTTTCCGCAATATAATACTTGATAAATTTCCTCGGTTATTG‑GCATTTCAACGCCGAAGCGATGCGCCAGTTCGCGGACTTCTTTCGTATTGCGGTAGCCTTCCACCACCTGACCAATCTTCTCCTGCGCGCTTTGTACATCCATGCCCTGACCGAGCATCATGCCAAAACGGCG‑GTTACGCGACTG‑GTTGTCGGTa                                                                                                                                                                                                                                  <  2:1367123/239‑1 (MQ=255)
               tGCGTGCACGACCTAGTAAAGTCAATGCTGCCTCGCGCGCGTTTTTTCCGCAATATAATACTTGATAAATTTCCTCGGTTATTG‑GCATTTCAACGCCGAAGCGATGCGCCAGTTCGCGGACTTCTTTCGTATTGCGGTAGCCTTCCACCACCTGACCAATCTTCTCCTGCGCGCTTTGTACATCCATGCCCTGACCGAGCATCATGCCAAAACGGCG‑GTTACGCGACTG‑GTTGTCGGTa                                                                                                                                                                                                                                  <  1:862488/239‑1 (MQ=255)
               tGCGTGCACGACCTAGTAAAGCCAATGCTGCCTCGCGCACGTTTCTTCCGCAAGATAATACTTGATAAATTTCCTCGGTTATTG‑GCATTTCAACGCCGGAGCGATGCGCCACTTCGCGGACTTCTTTCGTATTGCGGTAGCCTTCCACCACCTGACCAATCTTCTCCTGCGCGCTTTGTACATCCATGCCCTGACCAAGCATCATGCCAAAACGGCG‑GTTACGCGACTG‑ATTGTCGGTa                                                                                                                                                                                                                                  <  1:1374116/239‑1 (MQ=255)
                gCGTGCACGACCTAGTAAAGTCAATGCTGCCTCGCGCGCGTTTTTTCCGCAATATAATACTTGATAAATTTCCTCGGTTATTG‑GCATTTCAACGCCGAAGCGATGCGCCAGTTCGCGGACTTCTTTCGTATTGCGGTAGCCTTCCACCACCTGACCAATCTTCTCCTGCGCGCTTTGTACATCCATGCCCTGACCGAGCATCATGCCAAAACGGCG‑GTTACGCGACTG‑GTTGTCGGTAc                                                                                                                                                                                                                                 <  1:1626839/239‑1 (MQ=255)
                gCGTGCACGACCTAGTAAAGTCAATGCTGCCTCGCGCGCGTTTTTTCCGCAATATAATACTTGATAAATTTCCTCGGTTATTG‑GCATTTCAACGCCGAAGCGATGCGCCAGTTCGCGGACTTCTTTCGTATTGCGGTAGCCTTCCACCACCTGACCAATCTTCTCCTGCGCGCTTTGTACATCCATGCCCTGACCGAGCATCATGCCAAAACGGCG‑GTTACGCGACTG‑GTTGTCGGTAc                                                                                                                                                                                                                                 <  1:1230564/239‑1 (MQ=255)
                gCGTGCACGACCTAGTAAAGGCAAGGCTTCCTCGCGCGCGTTTTTTCCGCAATATAATACTGGATAAATTTCCTCGGTTATTG‑GCATTTCAACGCCGAAGCGATGCGCCAGTTCGCGGACTTCTTTCGTATTGCGGTAGACTTCCACCGCCTGGCCAAGCTTCTCCCGCCCGCTTTGTACATCCATGCCATGACCGAGGAGCATGCCAAATCGGCG‑GTTACGCGACTA‑TTTGGCGGTAc                                                                                                                                                                                                                                 <  1:852246/239‑1 (MQ=255)
                    gCACGACCTAGTAAAGTCAATGCTGCCTCGCGCGCGTTTTTTCCGCAATATAATACTTGATAAATTTCCTCGGTTATTG‑GCATTTCAACGCCGAAGCGATGCGCCAGTTCGCGGACTTCTTTCGTATTGCGGTAGCCTTCCACCACCTGACCAATCTTCTCCTGCGCGCTTTGTACATCCATGCCCTGACCGAGCATCATGCCAAAACGGCG‑GTTACGCGACTG‑GTTGTCGGTACAGGt                                                                                                                                                                                                                             <  1:85400/239‑1 (MQ=255)
                     cACGACCTAGTAAAGTCAATGCTGCCTCGCGCGCGTTTTTTCCGCAATATAATACTTGATAAATTTCCTCGGTTATTG‑GCATTTCAACGCCGAAGCGATGCGCCAGTTCGCGGACTTCTTTCGTATTGCGGTAGCCTTCCACCACCTGACCAATCTTCTCCTGCGCGCTTTGTACATCCATGCCCTGACCGAGCATCATGCCAAAACGGCG‑GTTTCGCGACTG‑GTTGTCGGGTCAGGTa                                                                                                                                                                                                                            >  2:409913/1‑239 (MQ=255)
                        gACCTAGTAAAGTCAATGCTGCCTCGCGCGCGTTTTTTCCGCAATATAATACTTGATAAATTTCCTCGGTTATTG‑GCATTTCAACGCCGAAGCGATGCGCCAGTTCGCGGACTTCTTTCGTATTGCGGTAGCCTTCCACCACCTGACCAATCTTCTCCTGCGCGCTTTGTACATCCATGCCCTGACCGAGCATCATGCCAAAACGGCG‑GTTACGCGACTG‑GTTGTCGGTACAGGTAAGc                                                                                                                                                                                                                         <  1:285140/239‑1 (MQ=255)
                                    tCAATGCTGCCTCGCGCGCGTTTTTTCCGCAATATAATACTTGATAAATTTCCTCGGTTATTG‑GCATTTCAACGCCGAAGCGATGCGCCAGTTCGCGGACTTCTTTCGTATTGCGGTAGCCTTCCACCACCTGACCAATCTTCTCCTGCGCGCTTTGTACATCCATGCCCTGACCGAGCATCATGCCAAAACGGCG‑GTTCCGGGCCCG‑GCTGTTGGtgcgagcacagcaccgaacgccc                                                                                                                                                                                                             >  1:1293494/1‑217 (MQ=255)
                                    tCAATGCTGCCTCGCGCGCGTTTTTTCCGCAATATAATACTTGATAAATTTCCTCGGTTATTG‑GCATTTCAACGCCGAAGCGATGCGCCAGTTCGCGGACTTCTTTCGTATTGCGGTAGCCTTCCACCACCTGACCAATCTTCTCCTGCGCGCTTTGTACATCCATGCCCTGACCGAGCATCATGCCAAAACGGCG‑GTTACGCCACTG‑GTTGTCGGTACCAGTAAGCACCAAATCGccc                                                                                                                                                                                                             >  2:32318/1‑238 (MQ=255)
                                    tCAATGCTGCCTCGCGCGCGTTTTTTCCGCAATATAATACTTGATAAATTTCCTCGGTTATTG‑GCATTTCAACGCCGAAGCGATGCGCCAGTTCGCGGACTTCTTTCGTATTGCGGTAGCCTTCCACCACCTGACCAATCTTCTCCTGCGCGCTTTGTACATCCATGCCCTGACCGAGCATCATGCCAAAACGGCG‑GGTACGCCACCG‑GTTGTTGGTACCAGGAAGCACCAGATCGcc                                                                                                                                                                                                              >  2:1129551/1‑238 (MQ=255)
                                      aaTGCTGCCTCGCGCGCGTTTTTTCCGCAATATAATACTTGATAAATTTCCTCGGTTATTG‑GCATTTCAACGCCGAAGCGATGCGCCAGTTCGCGGACTTCTTTCGTATTGCGGTAGCCTTCCACCACCTGACCAATCTTCTCCTGCGCGCTTTGTACATCCATGCCCTGACCGAGCATCATGCCAAAACGGCG‑GTGATGCGCCGA‑GTTGTCGGACAAGGTAAGTCCCAGATCGCCaa                                                                                                                                                                                                            >  2:325317/1‑238 (MQ=255)
                                        tgctgcCTCGCGCGCGTTTTTTCCGCAATATAATACTTGATAAATTTCCTCGGTTATTG‑GCATTTCAACGCCGAAGCGATGCGCCAGTTCGCGGACTTCTTTCGTATTGCGGTAGCCTTCCACCACCTGACCAATCTTCTCCTGCGCGCTTTGTACATCCATGCCCTGACCGAGCATCATGCCAAAACGGCG‑GTTACGCAACAG‑GTTGTCGGTGCAGGGAAGCACCAGACCGCCaacc                                                                                                                                                                                                          >  2:799593/1‑236 (MQ=255)
                                             ccTCGCGCGCGTTTTTTCCGCAATATAATACTTGATAAATTTCCTCGGTTATTG‑GCATTTCAACGCCGAAGCGATGCGCCAGTTCGCGGACTTCTTTCGTATTGCGGTAGCCTTCCACCACCTGACCAATCTTCTCCTGCGCGCTTTGTACATCCATGCCCTGACCGAGCATCATGCCAAAACGGCG‑GTTTCCCCCCTG‑GTTGTCGCTACAGGTTAGCACCacacaccccaaccccccc                                                                                                                                                                                                    >  1:91101/1‑222 (MQ=255)
                                             ccTCGCGCGCGTTTTTTCCGCAATATAATACTTGATAAATTTCCTCGGTTATTG‑GCATTTCAACGCCGAAGCGATGCGCCAGTTCGCGGACTTCTTTCGTATTGCGGTAGCCTTCCACCACCTGACCAATCTTCTCCTGCGCGCTTTGTACATCCATGCCCTGACCGAGCATCATGCCAAAACGGCG‑GGTACGCCACTG‑GCTGTCTGACCAGCAAAGAACCAGATAGCCAAGcccccc                                                                                                                                                                                                     >  2:792386/1‑236 (MQ=255)
                                              cTCGCGCGCGTTTTTTCCGCAATATAATACTTGATAAATTTCCTCGGTTATTG‑GCATTTCAACGCCGAAGCGATGCGCCAGTTCGCGGACTTCTTTCGTATTGCGGTAGCCTCCCCCCCCCTGACCAATCTTCCCCTGCGCGCTTTGTACATCCAGGCCCGGACCGAGCATCATGCCAAAACGGCG‑GTTACGCGACTG‑GTTGTCGGTACAGGAAAGCACCAGACCGCCAAGCCCCGCCa                                                                                                                                                                                                   <  1:1022941/239‑1 (MQ=255)
                                               tCGCGCGCGTTTTTTCCGCAATATAATCCTTGATAAATTTCCTCGTTTATGG‑GCATTTCAACGCCGAAGCGATGCGCCAGTTCGCGGACTTCTTTCGTATTGCGGTAGCCTTCCACCCCCTGACCAATCTTCTCCTGCGCGCTTTGTACATCCATGCCCTGACCGAGCATCATGCCAAAACGGCG‑GTTACGCGACTG‑GTTGTCGGTACAGGTAAGCCCCAGACCGCCAAGCCCCGCCAt                                                                                                                                                                                                  <  1:1447933/239‑1 (MQ=255)
                                               tCGCGCGCGTTTTTTCCGCAATATAATACTTGATAAATTTCCTCGGTTATTG‑GCATTTCAACGCCGAAGCGATGCGCCAGTTCGCGGACTTCTTTCGTATTGCGGTAGCCTTCCACCACCTGACCAATCTTCTCCTGCGCGCTTTGTACATCCATGCCCTGACCGAGCATCATGCCAAAACGGCG‑GTTACGCGACTG‑GTTGTCGGTACAGGTAAGCACCAGATCGCCAAGCCCCGCCAt                                                                                                                                                                                                  <  1:840038/239‑1 (MQ=255)
                                               tCGCGCGCGTTTTTTCCGCAATATAATACTTGATAAATTTCCTCGGTTATTG‑GCATTTCAACGCCGAAGCGAGGCGCCAGTTCGCGGACTTCTTTCGTATGGCGGTAACCTCCCACCCCCTGACCAATCTCCTCCTGCGCGCTTTGTACACCCATGCCCTGACAGAGCATCATGCAAAAACGGCG‑GTTACGCGACTG‑GTTGTCGGAACAGGTAAGCCCCAGATCGCCAAGCCCCGCCAt                                                                                                                                                                                                  <  1:444633/239‑1 (MQ=255)
                                               ccgcgcgcgTTTTTCCCCCAATATAAGACTTGATAAATTTCCTCGGTTATTG‑GCATTTCAACGCCGAAGCGATGCGCCAGTTCGCGGACTTCTTTCGTATTGCGGTAGCCTTCCCCCCCCTGCCCAACCTTCTCCTGCGCGCTTTGTACATCCATGCCCGGACCGAGCATCATGCCAAAACGGCG‑GTTACGCGACTG‑GTTGTCGGTACAGGTAAGCCCCAGATCGCCAAGCCCCGCCAt                                                                                                                                                                                                  <  1:31216/238‑1 (MQ=255)
                                                      gcgtttttCCGCAATATAATACTTGATAAATTTCCTCGGTTATTG‑GCATTTCAACGCCGAAGCGAGGCGCCAGTTCGCGGACTTCTTTCGTATTGCGGTAGCCTTCCACCCCCTGACCAATCTTCCCCTGCGCGCTTTGTACATCCATGCCCTGACCGAGCATCATGCCAAAACGGCG‑GTTACGCGACTG‑GTTGTCGGTACAGGTAAGCACCAGATCCCCAAGCCCCGCCATGCCCAt                                                                                                                                                                                            <  2:1534657/235‑1 (MQ=255)
                                                         tttttCCGAAATATAATACTTGATAAATTTCCTCGGTTATTG‑GCATTTCAACGCCGAAGCGATGCGCCAGTGCGCGGACTTCTTTCGTATTGCGGTAGCCTTCCACCCCCTGACCAATCTTCTCCTGCGCGCTTTGTACATCCATGCCCTGACCGAGCATCATGCCAAAACGGCG‑GTTACGCGACTG‑GTTGTCGGTACAGGTAAGCACCAGATCGCCAAGCCCCGCCATGCCCATAAAg                                                                                                                                                                                        <  2:1103289/239‑1 (MQ=255)
                                                                   ttataATACTTGAT‑AATTTTCTCGGTTTGTGTGCATTTCAACGCAGAGGCGATGCGCTAGGTCGCGGAATTCTTTCGTATTGCGGTATCCCTCCCCCCCCAGACCAATCTCCTCCTGCGCGTTTTGTACACCCGTGCCCTGACCGAGAAACAGGCAAAACCGGCG‑GTTTCGCGCATG‑GTTGCGGGTAGTGGTAAGCTCCAGAGCGCCAGGCCCCGCCATGCCCATAAAGGTGGCAGGGt                                                                                                                                                                              <  1:1297952/238‑1 (MQ=255)
                                                                   ttaaaataCTGTATAAATTCCCCCGGTTTTTG‑CCATTTCAACCCCGAACCGATGCGCCAGTTCGCGGCCTTCTTTCGTATTGCGGTAGCCTTCCACCACCTGCCCAACCTCCCCCTGCGCGCTTTGTCCATCCATGCCCTGACCGAGCATCATGCCAAAACGGCG‑GTTCCGCGACTG‑GTTGTCGGTACAGGTAAGCACCAGATCGCCAAGCCCCGCCATGCCCATAAAGGTGGCAGGGt                                                                                                                                                                              <  1:1373151/235‑1 (MQ=255)
                                                                     ataataCTGAATAAATTTCCTCGGTTGTTG‑GCATTTCAAGGCCGAAGCGATGCGCCAGTTCGCGGACTTCTTGCTTATTGCGGTGGCCTTCCCCCACCTGACCAATCTTCTCCTGCGCGCTTTGTACACCCAGGCCCTACCCGAGCATCAGGCAAAAACGGCG‑GTTACGGGACTG‑GTTGTCGGTACAGGTAAGCACCAGATCGCCAAGCCCCGCCATGCCCATAAAGGTGGCAGGGTCg                                                                                                                                                                            <  1:1467852/239‑1 (MQ=255)
                                                                      taataCTTGATAAATTCCCTCGGTTATTG‑GCATTCCAACGCCGAAGCAATGCGCCAGTTCGCGGCCTTCTTTCGTATTGCGGTAGCCTTCCCCCCCCTGACCAATCTTCTCCTGCGCGCTTTGTACATCCATGCCCTGACCGAGCATCATGCCAAAACGGCG‑GTTACGCGACTG‑GTTGTCGGTACAGGTAAGCACCAGATCGCCAAGCCCCGCCATGCCCATAAAGGTGGc                                                                                                                                                                                   <  1:522394/231‑1 (MQ=255)
                                                                         taCTTGATAAATTTCCTCGGTTATTG‑GCATTTCAACGCCGAAGCGATGCGCCAGTTCGCGGACTTCTTTCGTATTGCGGTAGCCTTCCACCACCTGACCAATCTTCTCCTGCGCGCTTTGTACATCCATGCCCTGACCGAGCATCATGCCAAAACGGCG‑GTTACCCGACTG‑GGTGTCGGGAAAGGGAAGCACCAGAAAGGCCACCCCCGCCCAGCCCCCAAAAGGGGCAGGGtgcgca                                                                                                                                                                         >  1:173986/1‑233 (MQ=255)
                                                                            ttGATAAATTTCCTCGGTTATTG‑GCATTTCAACGCCGAAGCGATGCGCCAGTTCGCGGACTTCTTTCGTATTGCGGTAGCCTTCCACCACCTGACCAATCTTCTCCTGCGCGCTTTGTACATCCATGCCCTGACCGAGCATCATGCCAAAACGGCG‑GTTACGCGACTG‑GTTGTCGGTCCAGGGCAACACCAGATCGCCCAACCCCCCCCTGCCCCCAAACGAGGCAGGGGCGGGAccc                                                                                                                                                                      >  1:287821/1‑238 (MQ=255)
                                                                              gATAAATTTCCTCGGTTATTG‑GCATTTCAACGCCGAAGCGATGCGCCAGTTCGCGGACTTCTTTCGTATTGCGGTAGCCTTCCACCACCTGACCAATCTTCTCCTGCGCGCTTTGTACATCCATGCCCTGACCGAGCATCATGCCAAAACGGCG‑GTTACGCGCCCG‑GTTGTCGGTACACGTAAGCACCAAAACGCCCAACCCCGCCCTGCCCCTAAAAGCGGCCAGGGCGGCACCCac                                                                                                                                                                    >  1:748956/1‑237 (MQ=255)
                                                                              gATAAATTTCCTCGGTTATTG‑GCATTTCAACGCCGAAGCGATGCGCCAGTTCGCGGACTTCTTTCGTATTGCGGTAGCCTTCCACCACCTGACCAATCTTCTCCTGCGCGCTTTGTACATCCATGCCCTGACCGAGCATCATGCCAAAACGGCG‑GTTACGCGACTG‑GTTGt                                                                                                                                                                                                                                       <  1:100720/171‑1 (MQ=255)
                                                                              gATAAATTTCCTCGGTTATTG‑GCATTTCAACGCCGAAGCGATGCGCCAGTTCGCGGACTTCTTTCGTATTGCGGTAGCCTTCCACCACCTGACCAATCTTCTCCTGCGCGCTTTGTACATCCATGCCCTGACCGAGCATCATGCCAAAACGGCG‑GTTACGCGACTG‑GTTGTCGGTCCAGGTAAGCACCAGAACGCCAAGCCCCCCCCTCCCCACACAGGTGGCAGGGTCGGCACCCAgc                                                                                                                                                                   >  2:1347860/1‑239 (MQ=255)
                                                                              gATAAATTTCCTCGGTTATTG‑GCATTTCAACGCCGAAGCGATGCGCCAGTTCGCGGACTTCTTTCGTATTGCGGTAGCCTTCCACCACCTGACCAATCTTCTCCTGCGCGCTTTGTACATCCATGCCCTGACCGAGCATCATGCCAAAACGGCG‑GTTACGCGACTG‑GTTGTCGGTACAGGTAAGCACCAGATCGCCAAACCCCGCCATGCCCCTAAAGGGGGCAGGGGCGGCACCCAgc                                                                                                                                                                   >  2:686547/1‑239 (MQ=255)
                                                                              gATAAATTTCCTCGGTTATTG‑GCATTTCAACGCCGAAGCGATGCGCCAGTTCGCGGACTTCTTTCGTATTGCGGTAGCCTTCCACCACCTGACCAATCTTCTCCTGCGCGCTTTGTACATCCATGCCCTGACCGAGCATCATGCCAAAACGGCG‑GTTACGCGACTG‑GTTGTCGGGACAGGTAAGCCCCAGATCGCCAAGCCCCGCCCTGCCCATAAAGGGGGCAGGGTCGGCACCCAg                                                                                                                                                                    >  2:1418459/1‑238 (MQ=255)
                                                                              gATAAATTTCCTCGGTTATTG‑GCATTTCAACGCCGAAGCGATGCGCCAGTTCGCGGACTTCTTTCGTATTGCGGTAGCCTTCCACCACCTGACCAATCTTCTCCTGCGCGCTTTGTACATCCATGCCCTGACCGAGCATCATGCCAAAACGGCG‑GTTACGCGACTG‑GTTGTCGGGACAGGGAAGCAACAGAACGCCCAGCCCCGCCATGCCCCTAAAGGGGGCAGGGTCGGCACCCaac                                                                                                                                                                   >  2:1152641/1‑237 (MQ=255)
                                                                              gATAAATTTCCTCGGTTATTG‑GCATTTCAACGCCGAAGCGATGCGCCAGTTCGCGGACTTCTTTCGTATTGCGGTAGCCTTCCACCACCTGACCAATCTTCTCCTGCGCGCTTTGTACATCCATGCCCTGACCGAGCATCATGCCAAAACGGCG‑GTTACGCGACTG‑GGTGTCGGTCCAGGGAAGCAACAAATCTCCAAACCCCGCCCTGCCCCAAAAGGTGGCAGGGGCCGCAcccccc                                                                                                                                                                   >  2:1261648/1‑236 (MQ=255)
                                                                              gATAAATTTCCTCGGTTATTG‑GCATTTCAACGCCGAAGCGATGCGCCAGTTCGCGGACTTCTTTCGTATTGCGGTAGCCTTCCACCACCTGACCAATCTTCTCCTGCGCGCTTTGTACATCCATGCCCTGACCGAGCATCATGCCAAAACGGCG‑GTTACGCGACCG‑GTTGTCGGTACAGGGAAGCACCAGATCGCCAAACCCCCCCCTGCCCACACAGGTGGCAGGGGGGGCACCCac                                                                                                                                                                    >  1:1515312/1‑237 (MQ=255)
                                                                              gATAAATTTCCTCGGTTATTG‑GCATTTCAACGCCGAAGCGATGCGCCAGTTCGCGGACTTCTTTCGTATTGCGGTAGCCTTCCACCACCTGACCAATCTTCTCCTGCGCGCTTTGTACATCCATGCCCTGACCGAGCATCATGCCAAAACGGCG‑GTTAACCGACTG‑GTTGt                                                                                                                                                                                                                                       >  2:100720/1‑171 (MQ=255)
                                                                              gATAAATTTCCTCGGTTATTG‑GCATTTCAACGCCGAAGCGATGCGCCAGTTCGCGGACTTCTTTCGTATTGCGGTAGCCTTCCACCACCTGACCAATCTTCTCCTGCGCGCTTTGTACATCCAACCCCTGACCGAGCATCATGCCAAAACGGCG‑GCTACCAGACAT‑GTTGGCGGGAAACGGAAAACCCAGAACCCAAAGCCCCCCCCTACCCCAAACAGTCGCATGGGCGGCAcccca                                                                                                                                                                    >  1:1632762/1‑236 (MQ=255)
                                                                                tAAATTTCCTCGGTTATTG‑GCATTTCAACGCCGAAGCGATGCGCCAGTTCGCGGACTTCTTTCGTATTGCGGTAGCCTTCCACCACCTGACCAATCTTCTCCTGCGCGCTTTGTACATCCATGCCCTGACCGAGCATCATGCCAAAACGGCG‑GTTTCGCGACTG‑GTTGTTGGGACAGGTAAGCACCAGATCGCCCAACCCCGCCCTGCCCCTAAAGGGGGGAGGGGCggggccagtc                                                                                                                                                                   >  2:522394/1‑229 (MQ=255)
                                                                                tAAATTTCCTCGGTTATTG‑GCATTTCAACGCCGAAGCGATGCGCCAGTTCGCGGACTTCTTTCGTATTGCGGTAGCCTTCCACCACCTGACCAATCTTCTCCTGCGCGCTTTGTACATCCATGCCCTGACCGAGCATCATGCCAAAACGGCG‑GTTACCCCACCC‑GGTGTCGGTGCAGGTGAGCCACAAATACCCCACCCCCCCCCCACCCCTACAAGTGGCAgggcgcgcccccgcag                                                                                                                                                                  >  1:550026/1‑225 (MQ=255)
                                                                                        cTCGGTTATTG‑GCATTTCAACGCCGAAGCGATGCGCCAGTTCGCGGACTTCTTTCGTATTGCGGTAGCCTTCCACCACCTGACCAATCTTCTCCTGCGCGCTTTGTACATCCATGCCCTGACCGAGCATCATGCCAAAACGGCG‑GTTACGCGACTG‑GTTGTCGGTACAGGTAAGCACCAGAACGCCCAGCCCCGCCACGCCCCTAAAGGTGGGAGGGGCGGCGCCCCGCGCCGccccca                                                                                                                                                         >  2:420288/1‑237 (MQ=255)
                                                                                           ggTTGTTG‑GCCTTTCAACGCAGAAGCGACGCTCCTGTGCGCGCGCTTCTTTCGTATGGCTGTAGCCTTCCACCCCCCGACCACTTTACTCCTGCGGGTTTTGTACGTCCATGCCCTGCCCGCGCGTCATGCAAAAACGGCG‑GTTCCGCGACGG‑GTTGCCGGTACAGGTAAGCACCAGATCGCCAAGCCCCGCCATGCCCATAAAGGTGGCAGGGTCGGCACCCAGCGCCGCACCAAGa                                                                                                                                                       <  1:1018646/238‑1 (MQ=255)
                                                                                             ttAGTG‑GCTTTTCAGCGCCGAAGCGCTGCGCCGGTTCGCGGATTTCTTTCGTATTGCGGTAGCCCTCCCCCACCACACCACTCTCCCCCTGCGCGCTTTGTCCAGCCATGCCCTGACCGACCATCATGCCAAAACGGCG‑GGTAGGCGCCTG‑GTTGTCGGTACAGGTAAGCACCAGACCGCCACGCCCCGCCATGCCCATAAAGGTGGCAGGGTCGGCACCCAGCGCCGCACCAAGAcg                                                                                                                                                     <  1:409913/238‑1 (MQ=255)
                                                                                              tATTG‑GCATTTCAACGCCGAAGCGATGCGCCAGTTCGCGGACTTCTTTCGTATTGCGGTAGCCTTCCACCACCTGACCAATCTTCTCCTGCGCGCTTTGTACATCCATGCCCTGACCGAGCATCATGCCAAAACGGCG‑GTTCCGCGACTG‑GTTGTCGGTACAGGTAAGCACCAGATCGCCAAGCCCCGCCATGCCCATAAAGGTGGCAGGGTCGGCACCCAGCGCCGCACCAAGAcgcg                                                                                                                                                   <  2:281463/239‑1 (MQ=255)
                                                                                                      aTTTCAACGCCGAAGCGATGCGCCAGTTCGCGGACTTCTTTCGTATTGCGGTAGCCTTCCACCACCTGACCAATCTTCTCCTGCGCGCTTTGTACATCCATGCCCTGACCGAGCATCATGCCAAAACGGCG‑GCTACCCCGCCA‑GTGGTCGGGACAAGGAAGCCCCCCATCCCCCAGCCCCCCCCCGCCCCCAAAAGAGGGAGGGGCCGCACCCCCCGCCGccccccaccgccacctct                                                                                                                                             >  1:937185/1‑224 (MQ=255)
                                                                                                         tCACCGCGGAAGCGCGGGGCCAGTTGCTGGCCTGCTTTCGTATTGCGGCAGCCTTCCACCACCGGCCCAATCTCCCCCTGCGCGCTTTGTCAATCCAGGCCCTGACCGAGCAGCATGCCAAAGCGGGG‑GTTACGCGACTG‑GTTTCCGGTACAGGTAGGCCCCAGATCGCCAAGCCCCGCCATGCCCATAAAGGTGGCAGGGTCGGCACCCAGCGCCGCACCAAGACGCGACATTTcagc                                                                                                                                         <  1:370391/239‑1 (MQ=255)
                                                                                                         tCAACGCCGAAGCGATGCGCCAGTTCGCGGACTTCTTTCGTATTGCGGTAGCCTTCCACCACCTGACCAATCTTCTCCTGCGCGCTTTGTACATCCATGCCCTGACCGAGCATCATGCCAAAACGGCG‑GTTACGCGAc                                                                                                                                                                                                                                               <  2:189589/138‑1 (MQ=255)
                                                                                                         tCAACGCCGAAGCGATGCGCCAGTTCGCGGACTTCTTTCGTATTGCGGTAGCCTTCCACCACCTGACCAATCTTCTCCTGCGCGCTTTGTACATCCATGCCCTGACCGAGCATCATGCCAAAACGGCG‑GTTACGCGACTG‑GTTGTCGGTACAGGTAAGCACCAGATCGCCAAGCCCCGCCATGCCCATAAAGGTGGCAGGGTCGGCACCCAGCGCCGCACCAAGACGCGACATTTcagc                                                                                                                                         <  2:550926/239‑1 (MQ=255)
                                                                                                         tCAACGCCGAAGCGATGCGCCAGTTCGCGGACTTCTTTCGTATTGCGGTAGCCTTCCACCACCTGACCAATCTTCTCCTGCGCGCTTTGTACATCCATGCCCTGACCGAGCATCATGCCAAAACGGCG‑GTTACGCGACTG‑GTTGTCGGTACAGGTAAGCACCAGATCGCCAAGCCCCGCCATGCCCATAAAGGTGGCAGGGTCGGCACCCAGCGCCGCACCAAGACGCGACATTTcagc                                                                                                                                         <  1:584588/239‑1 (MQ=255)
                                                                                                          aaaggcggaggagacgcgctggTTCGCGGACTTCTTACGAATTCGGTTAGCTTCCCCCCCCCTTCACACTCTTCTCCTGCGCGCTTGTTACACCATTGCCTTGCCCTCGAATCTTGCCAAGCCGGCG‑TTTCCCCGACTG‑GTTCTGGTTTATGGTATGCCCCGTAGCCCCAAGCCCCGCCATGCCCATAAAGGTGGCAGGGTCGGCACCCAGCGCCGCACCAAGACGCGACATTTcagc                                                                                                                                         <  1:1220474/217‑1 (MQ=255)
                                                                                                              gCCGAAGCGATGCGCCAGTTCGCGGCCTTCTTTCGTATTGCGGTAGCCTCCCACCCCCGGACCAATCTTCTCCTGCGCGCTTTGTACACCCATGCCCTGCCCGAGCATCATGCCAAAACGGCG‑GTTACGCGACTG‑GTTGTCGGTACAGGTAAGCACCAGATCGCCAAGCCCCGCCATGCCCATAAAGGTGGCAGGGTCGGCACCCAGCGCCGCACCAAGACGCGACATTTCagccag‑cc                                                                                                                                   <  2:1507788/239‑1 (MQ=255)
                                                                                                                caatgcaaggccccggTTCGCGAACTTCTTTCATATTGTGTAAGCCGTCCGCCGCCAGACCAAGCTTCCCCCGCGCGCTTTGTACATCCCTGCCCTGCCATACAATCCGGCCAAAACGGCG‑GTTGCGCCCCTG‑CTGGTCGGTACAGGTATGCCCAAGATCGCCAAGCGCCGCCATGCCCATAAAGGTGGCAGGGTCGGCACCCAGCGCCGCACCAAGACGCGACATTTCAGCCAG‑CCCa                                                                                                                                 <  1:879806/224‑1 (MQ=255)
                                                                                                                   aGCGATGCGCCAGTTCGCGGCCTTCTTTCGTATGGCGGTAGCCTTCCCCCACCTGACCAATCTCCTCCTGCGCGCTTTGTACATCCAGGCCCTGACCGAGCATCATGCCAAAACGGCG‑GTTACGCGACTG‑GTTGTCGGTACAGGTAAGCCCCAGATCGCCAAGCCCCGCCATGCCCATAAAGGTGGCAGGGTCGGCACCCAGCGCCGCACCAAGACGCGACATTTCAGCCAG‑CCCACgg                                                                                                                              <  2:941525/239‑1 (MQ=255)
                                                                                                                      gaggggcgcgTTCGCGACCTTCTTTCGTATGGCGGTGGCCTTCCCCCCCCTGCCAAATCTTCTCCGGCGCGCTTTGTACATCCATGCCCTGACCGAGCATCATGCCAAACCGGCG‑GTTACGCGACTG‑GTTGCCGGTAGAGGTAAGCACCAGACCGCCAAGCCCCGCCATGCCCATAAAGGTGGCAGGGTCGGCACCCAGCGCCGCACCAAGACGCGACATTTCAGCCAG‑CCCACGGGt                                                                                                                            <  1:542595/229‑1 (MQ=255)
                                                                                                                            ccAGTTCGCGGACTTCTTTCGTATTGCGGTAGCCTTCCACCACCTGACCAATCTTCTCCTGCGCGCTTTGTACATCCATGCCCTGACCGAGCATCATGCCAAAACGGCG‑GTTACCCCACTG‑GTTGTCGGTACAAGGAAGCACCAAATCGCCCAACCCCCCCCAGCCCCTAAAAGGGGGAGGGGCGGGCCCCCGCGCCCGCCCAAGACGCCACAATTTAGACAGACCCACGGGGGacag                                                                                                                       >  1:388431/1‑235 (MQ=255)
                                                                                                                             gtgTTCGCGGACTTTTTTCGTAGTGCGGCAGCCTCCCACGTCCGGACCAGCCTCCCCCGGCTCACTTTGTACATCACGGCCGTCACCGGTCAAGACGCCAAACGGGGG‑TTTCCGATTCTG‑GTTGTCGTCACGTGAAAGCCCAAGCCCGCAACGCCCCGCCATGCCCATAAAGGGGGCAGGGTCGGCACCCAGCGCCGCACCAAGACGCGACATTTCAGCCAG‑CCCACGGGTGATCAgc                                                                                                                     <  1:1129551/236‑1 (MQ=255)
                                                                                                                                          tctttctgtttgcgtgcgCCTCCCCCCGCCAGCCCAATTTTCTCCTGGCCGCTTTGTGCACCCATTCCCTGACCGATATGCACGCCAAAACGGGG‑TTTAGGCGACTG‑GTTGGGGGTACAGTTAAGCCCCAGATCGCCAAGCCCCGCCATGCCCATAAAGGTGGCAGGGTCGGCACCCAGCGCCGCACCAAGACGCGACATTTCAGCCAG‑CCCACGGGTGATCAGCGCCGTACGCGCAtt                                                                                                       <  1:107739/222‑1 (MQ=255)
                                                                                                                                          tcttTCGTATTGCGGTAGCCTTCCACCACCTGACCAATCTTCTCCTGCGCGCTTTGTACATCCATGCCCTGCCCGAGCATCATGCCAAAACGGCG‑GTTACGCGACTG‑GTTGTCGGTACAGGTAAGCACCAGATCGCCAAGCCCCGCCATGCCCATAAAGGTGGCAGGGTCGGCACCCAGCGCCGCACCAAGACGCGACATTTCAGCCAG‑CCCACGGGTGATCAGCGCCGTACGCGCAtt                                                                                                       <  2:1368373/239‑1 (MQ=255)
                                                                                                                                          tcttACGAATTGGGGTACCCTCCCACCCCCTGACAAATTTTCACCGGCGCGCTTTGTACCTCCAGGCCCTGACCGAGCAACATCCCAAAACGGCG‑GTTACGCGATTG‑GTTGTCGGCACAGGAAAGCCCCAGATCCCCAAGCCCCGCCATGCCCATAAAGGTGGCAGGGTCGGCACCCAGCGCCGCACCAAGACGCGACATTTCAGCCAG‑CCCACGGGTGATCAGCGCCGTACGCGCAtt                                                                                                       <  1:206035/239‑1 (MQ=255)
                                                                                                                                                tttttGCGGTAGCCTTCCCCCACCTGCCCATCCTCCCCCTGCGCGCTTTGTACATCCATGCCCTGACCGAGCATCATGCCAAAACGGCG‑GTTACGCGACTG‑GTTGTCGGTACAGGTAAGCACCAGATCCCCAAGCCCCGCCATGCCCATAAAGGTGGCAGGGTCGGCACCCAGCGCCGCACCAAGACGCGACATTTCAGCCAG‑CCCACGGGTGATCAGCGCCGTACGCGCATTCGCA‑cc                                                                                                <  1:1418459/236‑1 (MQ=255)
                                                                                                                                                   ttGCGGTAGCCTTCCACCACCTGACCAATCTTCTCCTGCGCGCTTTGTACATCCATGCCCTGACCGAGCATCATGCCAAAACGGCG‑GTTACACGCCTG‑GGTGTTGGGTCCCGGAAGCAACAAAACGACGCCCCCCACCAGGCCCTTAACGGTGGCAGGGGCGGCACCCAGCGCCGCACCACGACGCGCCAATTCAGACAA‑CGCACAGGGGATCAGCGCCGGAcaggccgccgaacccga                                                                                              >  1:631607/1‑223 (MQ=255)
                                                                                                                                                                ccccccccccccaattcttccCCCGCGCGTTTTGTAACTCCAGCCCCAGCCAGGCCATAAGGCAAAAGGGGGG‑TTTGCGCGACTG‑GTTGGCGGTCAAGGAAACCCCCAGCCCCCCACCCCCCGCCATGCCCATAAAGGTGGCGGGGTCGGCCCCCAGCGCCGCCCCAAGACGCGACATTTCAGCCAG‑CCCACGGGTGATCAGCGCCGTACGCGCATTCGCA‑CCAAAACCGATCCCGTCg                                                                                <  1:1261504/224‑1 (MQ=255)
                                                                                                                                                                  cccaccTGACCAATCTTCTCCTGCGCGCTTTGTACATCCATGCCCTGCCCGAGCATCATGCCAAAACGGCG‑GTTACGCGACTG‑GTTGTCGGTACAGGTAAGCACCAGATCGCCAAGCCCCGCCATGCCCATAAAGGTGGCAGGGTCGGCACCCAGCGCCGCACCAAGACGCGACATTTCAGCCAG‑CCCACGGGTGATCAGCGCCGTACGCGCATTCGCA‑CCAAAACCGATACCGTCGGa                                                                              <  2:937185/238‑1 (MQ=255)
                                                                                                                                                                  accaccTGACCAATCTTCTCCTGCGCGCTTTGTACATCCATGCCCTGACCGAGCATCATGCCAAAACGGCG‑GTTACGCGACTG‑GTTGTCGGTACAGGTAAGCCCCAGATCGCCAAGCCCCGCCATGCCCATAAAGGTGGCAGGGTCGGCACCCAGCGCCGCACCAAGACGCGACATTTCAGCCAG‑CCCACGGGTGATCAGCGCCGTACGCGCATTCGCA‑CCAAAACCGATACCGTCGGa                                                                              <  2:369594/239‑1 (MQ=255)
                                                                                                                                                                   ccaccTGCCCAATCTTCCCCTGCGCGCTTTGTACACCCATGCCCTGACCGAGCATCATGCCAAAACGGCG‑GTTACGCGACTG‑GTTGCCGGTACAGGTAAGCACCAGACCGCAAAGCCCCGCCATGCCCATAAAGGTGGCAGGGTCGGCACCCAGCGCCGCACCAAGACGCGACATTTCAGCCAG‑CCCACGGGTGATCAGCGCCGTACGCGCATTCGCA‑CCAAAACCGATACCGTCGGAc                                                                             <  2:1515312/239‑1 (MQ=255)
                                                                                                                                                                       cTGACCAATCTTCTCCTGCGCGCTTTGTACATCCATGCCCTGACCGAGCATCATGCCAAAACGGCG‑GTTACGCGCCCG‑GTTGTCGGTACAGGGAAGCACCAAATCGCCAAACCCCGCCATGCCCATAAAGGTGGGAGGGGCGGCACCCCGCCCCGCACCCAGACGCCACATTTCAGCCCG‑CCCCCCGGGGGACAGCGCCCGACGCCGCTTCGCC‑CCCAAAcacaaaaccgcggccatc                                                                          >  1:1580676/1‑221 (MQ=255)
                                                                                                                                                                          aCCAATCTTCTCCTGCGCGCTTTGTACATCCATGCCCTGACCGAGCATCATGCCAAAACGGCG‑GTTACGCGGCTG‑GTTGTCGGGACAGGGAAAGACCAAAACGCCCAGCCCCGCCCCGCCCATAAAGGGGGGCGGGGCGGGACCCAGCGCCCCACCAACACGCGACCTTTTAGCCCC‑CCCACGGGGGAGCAGCGCGGGGACCGCCTTCGCC‑CCCAAACCACCACCGCCGGACACcccc                                                                       >  1:811197/1‑238 (MQ=255)
                                                                                                                                                                              aTCTTCTCCTGCGCGCTTTGTACATCCATGCCCTGACCGAGCATCATGCCAAAACGGCG‑GTTACGCGACGG‑GTTGTCGGTACAGGTAAGCACCAGATCGCCAAGCCCCGCCATGCCCATAAAGGTGGCAGGGTCGGCACCCAGCGCCGCACCAAGACGCGACATTTCAGCCAG‑CCCACGGGTGATCAGCGCCGTACGCGCATTCGCA‑CCAAAACCGATACCGTCGGACATCCCCGCAcc                                                                  <  2:741261/239‑1 (MQ=255)
                                                                                                                                                                                    tcCTGCGCGCTTTGTACATCCATGCCCTGACCGAGCATCATGCCAAAACGGCG‑GTTACGCGCCTG‑GTTGTCGGTACAGGTAAGCACCACATCGCCAAACCCCCCCATGCCCCTAAAGATGGCAGGGTCGGGACCCAGCGCCGCCCCACAACGCGACATTTCAGCCAG‑CCCCCGGGCGATCAGCGCCGTACGCGCCTTCGCC‑CCAACACCCATCCCCCCGGACATACCCCCCCCCATGGc                                                            >  1:1189962/1‑239 (MQ=255)
                                                                                                                                                                                      cTGCGCGTTTTGTGCACCCACGCCCTGCCCGAGCAACATCCCAAAGCGGCG‑GTTACCCGCGTGTGTTG‑CGGTACAGGTAAGCACCAGACCCCCAAGCCCCGCCATGCCCATAAAGGTGGCAGGGTCGGCACCCAGCGCCGCACCAAGACGCGACATTTCAGCCAG‑CCCACGGGTGATCAGCGCCGTACGCGCATTCGCA‑CCAAAACCGATACCGTCGGACATCCCCGCACCAATGGCaa                                                          <  1:1261648/239‑1 (MQ=255)
                                                                                                                                                                                         ctgtgttagaacctccgggCCATGACCGAGCA‑CAAACCCAAACCGCGTGTTCGGCGAGTG‑GTTGCGGGTACAGGTAAGCACCAGACCGCCAAGCCCCGCCATGCCCATAAAGGTGGCAGGGTCGGCACCCAGCGCCGCCCCAAGACGCGACATTTCAGCCAG‑CCCACGGGTGATCAGCGCCGTACGCGCATTCGCA‑CCAAAACCGATACCGTCGGACATCCCCGCACCAATGGCAAT‑a                                                       <  1:956769/220‑1 (MQ=255)
                                                                                                                                                                                         cgcgcTTTGTACATCCATGCCCTGACCGAGCATCATGCCAAAACGGCG‑GTTTCCCGACTG‑GTTGTCGGTACAGGGAAGCCCCACAACGCCAAGCCCCCCCATGCCCCTAAAGGGGGCAGGGGCGGCCCCCCCCGCCGCCCCCAAACGCGACACTTCAGCCCG‑CCCCCCGGTGATCAGCGCCCTACGCGCCTTCCCC‑CCCAAACCCACACCGTCCGACAACCCCGcccccaccgcaacca                                                       >  1:1296824/1‑228 (MQ=255)
                                                                                                                                                                                              tttGTACATCCATGCCCTGACCGGGCATCATGCCAAAACGGCG‑GTTCCGCGACTG‑GTTGTCGGTACAGGTAACCACCAGATCGCCAAGCCCCGCCATGCCCATAAAGGTGGCAGGGTCGGCACCCAGCGCCGCACCAAGACGCGACATTTCAGCCAG‑CCCACGGGTGATCAGCGCCGTACGCGCATTCGCA‑CCAAAACCGa                                                                                        <  2:1367048/201‑1 (MQ=255)
                                                                                                                                                                                                tGTACATCCATGCCCTGACCGAGCATCATGCCAAAACGGCG‑GTTACGCGACTG‑GTTGTCGGTACAGGTAAGCACCAGATCGCCAAGCCCCGCCATGCCCATAAAGGTGGc                                                                                                                                                                                   <  2:1098249/110‑1 (MQ=255)
                                                                                                                                                                                                      tCCAGGCCCTGACCGAGCATCATGCCAAAACGGCG‑GTTACGCGACTG‑GTTGTCGGTACAGGTAAGCACCAGATCGCCAAGCCCCGCCATGCCCATAAAGGTGGCAGGGTCGGCACCCAGCGCCGCACCAAGACGCGACATTTCAGCCAG‑CCCACGGGTGATCAGCGCCGTACGCGCATTCGCA‑CCAAAACCGATACCGTCGGACATCCCCGCACCAATGGCAAT‑AACGTTTTTCACcgc                                         <  2:7026/239‑1 (MQ=255)
                                                                                                                                                                                                        cATGCCCTGACCGAGCATCATGCCAAAACGGCG‑GTTACGCGACTG‑GTTGTCGGTAAAGGTAAGCACCAAAACGCCAAGCCCCGCCCCGCCCCTAAAAGTGGCAGGGTCGGCACCCCGCGCCCCCCCCAAACGCCACCTTTCAACCCG‑CCCCCCGGGGAGCCGCGCCGCACGCCCCTTCGCA‑CCAAAAACCACACCCCCGGCCCTCCCCCCCCCCACGGCAAA‑CAAGCTTTTCaacacc                                        >  1:1290639/1‑233 (MQ=255)
                                                                                                                                                                                                          tGCCCTGACCGAGCATCATGCCAAAACGGCG‑GTTTCGCGACTG‑GGTTTCGGCACAGAGAAAAACCAAAACGCCAAACCCCCCCCTTCCCATAAAGGGGGCCAGGGCGGCACCCCCCGCCGCCCCCAAACGCGCCATTTTAGCCCC‑CCCCCGGGGGGTTCACGCCGCAAGCGCATTCGCACCCAAAACCGCCA‑CGCCGGACACCCCCCCCCCCACGGCCCA‑AACCGTTTTCACCCcgcc                                      >  1:1306131/1‑238 (MQ=255)
                                                                                                                                                                                                          tGCCCTGACCGAGCATCATGCCAAAACGGCG‑GTTTCCCGACTG‑GGTGTCGGGACAGGGAAGCCCCAAAACGCCCAGCCCCGCCCTGCCCACAAAGGTGGGAGGGGGGGCACCCCGCGCCGCACCCAGACGCGACATTTCAGTCCG‑CCCACGCGTGACCAGCGCCCTACGCGCAGTCGCC‑CCAAAAACGAAAACCGCGGAAACCCCCCCACCACCTGCAATAAACGttttcaaccccac                                       >  1:940292/1‑229 (MQ=255)
                                                                                                                                                                                                               ggACCGGGCATCAGGCCAAAACGGCG‑GTTACGCGACTG‑GTTGTCGGTACAGGTAAGCCCCAGACCCCCCAGCCCCGCCATGCCCATAAAGGTGGCAGGGTCGGCACCCAGCGCCGCACCAAGACGCGACATTTCAGCCAG‑CCCACGGGTGATCAGCGCCGTACGCGCATTCGCA‑CCAAAACCGATACCGTCGGACATCCCCGCACCAATGGCAAT‑AACGTTTTTCACCGCGCCGCCAAg                                <  1:686547/238‑1 (MQ=255)
                                                                                                                                                                                                                 aCCGAGCATCATGCCAAAACGGCG‑GTTACGCGACTG‑GGTGTCGGTACAGGGAAGCCACAAAACGCCAAACCCCCCCACGCCCATAAAGGGGGCAGGGGCGGCACCCCGCGCCCCCCCCAGACCCCACATTTCCGCCAG‑CCCCCCGGGGATCAGCGCCCCACCCCCACTCCCA‑CCAAAACCGCAACCCCCGGCACTCCCCCCACCCATGGCCAA‑AAAGCTTTTCACCCCCCCCCCaaca                               >  1:422204/1‑236 (MQ=255)
                                                                                                                                                                                                                    gggCATCAGGCCAAAACGGCG‑GTTACGTGACTG‑GTTGCCGGTACAGGAAAGCACCAGACCGCCAAGCCCCGCCATGCCCATAAAGGTGGCAGGGTCGGCACCCAGCGCCGCACCAAGACGCGACATTTCAGCCAG‑CCCACGGGTGATCAGCGCCGTACGCGCATTCGCA‑CCAAAACCGATACCGTCGGACATCCCCGCACCAATGGCAAT‑AACGTTTTTCACCGCGCCGCCAAGCTGCa                           <  2:1306131/237‑1 (MQ=255)
                                                                                                                                                                                                                       catcatGCCAAAACGGCG‑GTTACGCGACTG‑GTTTTCGGGACAGGGAAGCACCAAAACGCCCAACCCCCCCATGCCCCCAAAGGGGGGAGGGGCGGCACCCAGCCCCGCACCCAAACGCCACCATTTAGCCAG‑CCCACCGGGGATCAGCGCCGCACCCCCCTTCGCA‑CCAAAACCCAAACCGCCCGACATCCCCCCCCCCAAAGGAAT‑AAAGTTTTTTCCCCCgccccccacaccgccg                         >  1:714395/1‑228 (MQ=255)
                                                                                                                                                                                                                        atcagGCCAAGACGGCG‑TTTACGCGACTG‑GTAGTCGCTAGAGGTAAGCACCACGTCGCCAAGCCCCGCCATGCCCATAAAGGTGGCAGGGTCGGCACCCAGCGCCGCACCAAGACGCGACATTTCAGCCAG‑CCCACGGGTGACCAGCGCCGTACGCGCATTCGCA‑CCAAAACCGATACCGTCGGACAGCCCCGCACCAATGGCAAT‑AACGTTTTTCACCGCGCCGCCAAGCTGCACGc                        <  1:1544992/238‑1 (MQ=255)
                                                                                                                                                                                                                        ataatGCCAAACCGGGG‑GTTCCGCGCCTG‑TTTGCCGGTACAGGTAAGCACCAGATCGCCAAGCCCCGCCATGCCCATAAAGGTGGCAGGGTCGGCACCCAGCGCCGCACCAAGACGCGACATTTCAGCCAG‑CCCACGGGTGATCAGCGCCGTACGCGCATTCGCA‑CCAAAACCGATACCGTCGGACATCCCCGCACCAATGGCAAT‑AACGTTTTTCACCGCGCCGCCAAGCTGCACGc                        <  2:91101/235‑1 (MQ=255)
                                                                                                                                                                                                                        accatGCCAAAAGGGCG‑GTGACGCGCCGG‑GTTGTCGTTACGGGTAAGCACCAGACCGCCAGGCCCCGCCATGCCCATAAAGGTGGCAGGGTCGGCACCCAGCGCCGCACCAAGACGCGACATTTCAGCCAG‑CCCACGGGTGATCAGCGCCGTACGCGCATTCGCA‑CCAAAACCGATACCGTCGGACATCCCCGCACCAATGGCAAT‑AACGTTTTTCACCGCGCCGCCAAGCTGCACg                         <  2:1287826/235‑1 (MQ=255)
                                                                                                                                                                                                                         caagcccAAACCGGCG‑TGTCCCCGACTG‑GTGGCGGGTACAGGAAGCCACCAGACCGCAAAGCCCCGCCATGCCCATAAAGGTGGCAGGGTCGGCACCCAGCGCCGCACCAAGACGCGACATTTCAGCCAG‑CCCACGGGTGATCAGCGCCGTACGCGCATTCGCA‑CCAAAACCGATACCGTCGGACATCCCCGCACCAATGGCAAT‑AACGTTTTTCACCGCGCCGCCAAGCTGCACGCCa                      <  1:698291/234‑1 (MQ=255)
                                                                                                                                                                                                                                              cgcgCCTG‑GTGGCCGGTACAGTTAAGCCCCAGACCCACAAGCCCCGCCATGCCCATAAAGGTGGCAGGGTCGGCACCCAGCGCCGCACCAAGACGCGACATTTCAGCCAG‑CCCACGGGTGATCAGCGCCGTACGCGCATTCGCA‑CCAAAACCGATACCGTCGGACATCCCCGCACCAATGGCAAT‑AACGTTTTTCACCGCGCCGCCAAGCTGCACGCCAATGAAATCCGGATTGCTGTa  <  2:388431/239‑1 (MQ=255)
                                                                                                                                                                                                                                               |                                                                                                                                                                                                                                                 
TGCTGCGCTCGTCCTTGCGTGCACGACCTAGTAAAGTCAATGCTGCCTCGCGCGCGTTTTTTCCGCAATATAATACTTGATAAATTTCCTCGGTTATTG‑GCATTTCAACGCCGAAGCGATGCGCCAGTTCGCGGACTTCTTTCGTATTGCGGTAGCCTTCCACCACCTGACCAATCTTCTCCTGCGCGCTTTGTACATCCATGCCCTGACCGAGCATCATGCCAAAACGGCG‑GTTACGCGACTG‑GTTGTCGGTACAGGTAAGCACCAGATCGCCAAGCCCCGCCATGCCCATAAAGGTGGCAGGGTCGGCACCCAGCGCCGCACCAAGACGCGACATTTCAGCCAG‑CCCACGGGTGATCAGCGCCGTACGCGCATTCGCA‑CCAAAACCGATACCGTCGGACATCCCCGCACCAATGGCAAT‑AACGTTTTTCACCGCGCCGCCAAGCTGCACGCCAATGAAATCCGGATTGCTGTA  >  NC_000913/3782649‑3783123

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 24 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑

GATK/CNVnator alignment

N/A