Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A2 F9 I0 R1
|
142 |
103.7 |
2603848 |
81.8% |
2129947 |
227.3 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
freq |
annotation |
gene |
description |
| RA |
NC_000913 |
3,830,350 |
T→A |
19.1% |
intergenic (+15/‑106) |
xanP → / → yicH |
xanthine permease/putative inner membrane‑anchored periplasmic AsmA family protein |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NC_000913 | 3,830,350 | 0 | T | A | 19.1%
| 120.9
/ 5.3
| 69 | intergenic (+15/‑106) | xanP/yicH | xanthine permease/putative inner membrane‑anchored periplasmic AsmA family protein |
| Reads supporting (aligned to +/- strand): ref base T (39/13); new base A (2/12); total (44/25) |
| Fisher's exact test for biased strand distribution p-value = 5.79e-05 |
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.97e-01 |
CCATCGCCGCCTCCGGTGTGCGTATCGTTTCTCGTGAGCCGCTGAACCGTCGGGCGATTCTGATTATCGCGCTGTCGCTGGCGGTTGGTCTGGGCGT‑GTCTCAGCAGCCGCTGATTTTGCAGTTTGCCCCTGAATGGCTGAAAAACCTGCTCTCCTCCGGGAT‑CGCCGCGGGCGGTATTACTGCCATCGTGCTGAATCTGATTTTCCCACC‑AGAAAAACAGTAA‑TTCACTGGCGGCGGTAAGATAATTACCGCCGCA‑GTCTCACCTC‑TTTAACCATTCCCGCCTTGAGGATTGCGCGTAAATCGTGCATAACTCCCTTATGTGCATTTCACGGGATGGAAGACCATGAAATTTATTGGGAAGCTGCTTCTCTACATTCTCATCGCTCTGTTAGTGGCGAT‑CGCTGGCCTCTATTTTCTTCTGCAAACCCGCTGGGGAGCAGAACATATCAGCGCATGGGTTTCCGAGA > NC_000913/3830112‑3830579
|
ccgtgccgccccgcGGTGTGCGGTTCGTGTCTGGGTAGGCGCGGAACAGTCGGGGGTTTCTGTTTATCGCGTTGTCGCTGGCGGTTGGTCTGGGCTT‑GTCTCAGCAGCCGCTGATTTTGCAGTTTGCCCCTGAATGGCTGAAAAACCTGCTCTCCTCCGGGAT‑CGCCGCGGGCGGTATTTCTGCCATCGTGCTGAATCTGATTTTCCCACC‑AGAAAAACAGTAA‑TTCACTGGCGGCGGt < 1:819563/226‑1 (MQ=255)
ccctCGCCGCCTCGGGTTTGAGTTTTTGTTCTCGGGAGCCGCGGAACCGGCGGGCGTTTGTGATTAGCGCGCTGTCGGTGGCGGTTGGTCGGGGGGT‑GTCTCAGCCGCCGCTGATGTTGCAGTTTGCCCCTGAATGGCTGAAAAACCTGCTCTCCTCCGGGAT‑CGCCGCGGGCGGTATTACTGCCATCGTGCTGAATCTGATTTTCCCACC‑AGAAAAACAGTAA‑TTCACTGGCGGCGGt < 1:336874/236‑1 (MQ=255)
ccctCGCCCCCTCCGTTGTGCGTATCGTTTCTCGTGAGCCGCTGAACCGGCGGGCGATTCTGATTATCGCGCTGTCGCTGGCGGTTGGTCTGGGCGT‑GTCTCAGCAGCCGCTGATTTTGCAGTTTGCCCCTGAATGGCTGAAAAACCTGCTCTCCTCCGGGAT‑CGCCGCGGGCGGTATTACTGCCATCGTGCTGAATCTGATTTTCCCACC‑AGAAAAACAGTAA‑TTCACTGGCGGCGGt < 2:892057/236‑1 (MQ=255)
ccATCGCCGCCTCCGGTGTGCGTATCGTTTCTCGTGAGCCGCTGAACCGTCGGGCGATTCTGATTATCGCGCTGTCGCTGGCGGTTGGTCTGGGCGT‑GTCTCAGCAGCCGCTGATTTTGCAGTTTGCCCCTGAATGGCTGAAAAACCTGCTCTCCTCCGGGAT‑CGCCGCGGGCGGTATTACTGCCATCGTGCTGAATCTGATTTTCCCACC‑AGAAAAACAGTAA‑TTCACTGGCGGCGGt < 2:1193445/239‑1 (MQ=255)
ccATCGCCGCCTCCGGTGGGCGTATCGTTTCTCGTGAGCCGCTGAACCGTCGGGCGATTCTGATTATCGCGCTGTCGCTGGCGGTTGGTCTGGGCGT‑GTCTCAGCAGCCGCTGATTTTGCAGTTTGCCCCTGAATGGCTGAAAAACCTGCTCTCCTCCGGGAT‑CGCCGCGGGCGGTATTACTGCCATCGTGCTGAATCTGATTTTCCCACC‑AGAAAAACAGTAA‑TTCACTGGCGGCGGt < 2:381284/239‑1 (MQ=255)
cATTGCCGCCGGCGGTGAGCGGATCGTTTCGGGTGAGCCGGTGAACCGTCGGGCGATTCTGATTATCGCGCTGTCGCTGGCGGTTGGTCTGGGCGT‑GTCTCAGCAGCCGCTGATTTTGCAGTTTGCCCCTGAATGGCTGAAAAACCTGCTCTCCTCCGGGAT‑CGCCGCGGGCGGTATTACTGCCATCGTGCTGAATCTGATTTTCCCACC‑AGAAAAACAGTAA‑TTCACTGGCGGCGGTa < 2:852267/239‑1 (MQ=255)
tCGCCGCCTCCGGTGTGCGTATCGTTTCTCGTGAGCCGCTGAACCGTCGGGCGATTCTGATTATCGCGCTGTCGCTGGCGGTTGGTCTGGGCGT‑GTCTCAGCAGCCGCTGATTTTGCAGTTTGCCCCTGAATGGCTGGAAAACCTGCTCTCCTCCGGGAT‑CGCCCCGGGCGGGATTACTGCCATCGTGCTGAATCTGATTTTCCCCCC‑CCGAAAACAAGAA‑TTCACTGTCGGCGGTaca > 2:819563/1‑237 (MQ=255)
tttcgtgtggggtttCGTTTCTGGGGAGCCGGTGACCGGTGGGGGTTTTCTGGTTTTCGCGCTGTCGCGGGCGGTGGGTCGGGGGGT‑GTCTCAGCATGCTTTGATTTTGAAGTTGGCCCGGGAAGGGCTGAAAAACCTGCTCCCCTCCGGGAT‑CGCCGCGGGCGGTATTACTGCCATGGTGCTGAATCTGTTTTCCCCCCC‑AGAAAAACAGTAA‑TTCACTGGCGGCGGTAGGATAATTa < 1:158752/225‑1 (MQ=255)
gtgCGTATCGTTTCTCGTGAGCCGCTGAACCGTCGGGCGATTCTGATTATCGCGCTGTCGCTGGCGGTTGGTCTGGGGGG‑GTCTCAGCAGCCGCTGATTTTGCAGTTTGCCCCTGAATGGCTGAAAAACCTGCTCTCCTCCGGGAT‑CGCCCCGGGCGGTATTACTGCCATCGGGCTGAATCTGATTTTCCCCCC‑AGAAAAACAGTAA‑TTCACTGGCGGCGGGAAGGAAAATAccgcccc > 2:1268434/1‑237 (MQ=255)
ttgTTTCTCGTTGCCCGGGGAGCCGGGGGGGGATTTTGTTTATCGCGTTGTCTGGTGCGGTTGGT‑TGGGGGTGGTCCCACCACCCGCTGTTTTTGCAGTTGGCCCTGGAATGGTTGAAAACCTTTCCCTCCTCGGGGAC‑CGCGGCGGGCGGTTTTACTGCCAGCGTGCTGAATCTGTTTTTCCCACC‑AGAAAAGCAGTAT‑TTCACTGGCGGCGGTAAGATAATTACCGCCGCA‑GTCTCa < 1:1195294/237‑1 (MQ=255)
ttCTCGTGAGCCGCTGAACCGTCGGGCGATTCTGATTATCGCGCTGTCGCTGGCGGTTGGTCTGGGCGT‑GTCTCAGCAGCCGCTGATTTTGCAGTTTGCCCCTGAATGGCTGAAAAACCTGCTCTCCTCCGGGAT‑CGCCGCGGGCGGGATTACTGCCATCGTGCTGAATCTGATTTTTCCACC‑AGAAAAACAGTAA‑TTCACTAGCGGCGGTAAGATAATTATCCCCGCC‑GTCTCAcc > 2:660956/1‑237 (MQ=255)
cTGAACCGTCGGGCGATTCTGATTATCGCGCTGTCGCTGGCGGTTGGGCTGGGCGT‑GTCTCAGCAGCCGCTGATTTTGCAGTTTGCCCCTGAATGGCTGAAAAACCTGCTCTCCTCCGGGAT‑CGCCGCGGGCGGGATTACTACCATCGTGCGTAATATGATTTTCCCACC‑CGGAAAAACGTAA‑TTCACTGGCGGGCGTAAAGAAATTTCCGCCCCC‑GTCTCCCCCCTTTTAACCATTc > 2:774995/1‑238 (MQ=255)
tctcctgtggggtttttCTGTTTGTCGGGGTGTCGCGGGCGGTGGCCTTGGGTGT‑TTCT‑GGCCGGCCCTGTTTTTGCCGTTTGCCCCTGAAAGGGCGAAAAACCTGTCCCCCCGCGGTATCCGCCGGGGCGGGTATTCCTGCCATCGGGTGGATTTTGTTTTCCCCCCC‑AAAAAAAAATAAT‑TTCCCTGGGGGCGGTAATATAATTACCGCCGCA‑GTCTCACCTC‑TTTAACCATTCCCg < 1:1065506/224‑1 (MQ=255)
cgcgCTGTCGCTGGCGGTTGGTCTGGGCGT‑GTCTCAGCAGCCGCTGATTTTTCAGTTTGCCCCTGAATGGCTGAAAAACCTGCTCTCCTCCCGGAT‑CGCCGCGGGCGGGATTACTGCCATCGTGCTGAATCTGGTTTTCCCACC‑AGAAAAACAGGAA‑TTCACTGGCCGCGGAAAGGAAATTAACCCCGCAGGTTCCACCTC‑TTT‑ACCCTTCCCCCCtctgggatttccccgtaa > 2:1204895/1‑217 (MQ=255)
cgcgCTGTCGCTGGCGGTTGGTCTGGGCGT‑GTCTCAGCAGCCGCTGATTTTGCAGTTTGCCCCTGAATGGCTGAAAAACCTGCTCTCCTCCGGGAT‑CGCCGCGGGCGGTATTACTGCCATCGTGCTGAATCTGATTTTCCCACC‑AGAAAAACAGTAA‑TTCACTGGCGGCGGGAAGATAATTACCGCCGCA‑GTCTCACCCC‑TTTTACCATTCCCGCCCTGAGGGTTTCGCGGaaaacct > 2:995033/1‑234 (MQ=255)
cgcgCTGTCGCTGGCGGTTGGGCTGGGCGT‑GTCTCAGCAGCCGCTGATTTTGCAGTTTGCCCCTGAATGGCTGAAAAACCTGCTCTCCCCCGGGGT‑CGCCGCGGGCGGTATTACTGCCATCGTGCTGGATCTGAGTTTCCCACC‑CGACAAACCGTAC‑TTCACTGCCGGCGGGAAGATAATTATCACCGCA‑GTACCACCTC‑TTTACCACTTccccccattacgagacggcctgaaaaagg > 1:256432/1‑216 (MQ=255)
gttttcccgcggcctgCTTATTTTGAGTTTTCCCCCTGAAGGGTAAAAACCCCTGCTCCCCCCGGGGAT‑CGCCGCGGGGGTTATTTCTGCCATCGTGCTGAATCTGATTTCCCCCCC‑AGAAAAACAGTAA‑TTCACTGGGGGCGGAAAGATAATTCCCGCCGCA‑GTCTCACCTC‑TTTAACCATTCCCGCCTTGAGGATTGCGCGTAAATCGTGCATAACTCCCTTATGTGCATTTCACg < 2:657493/223‑1 (MQ=255)
t‑gtCTCAGCAGCCGCTGATTTTGCAGTTTGCCCCTGAATGGCTGAAAAACCTGCTCTCCTCCGGGAT‑CGCCGCGGGCGGTATTACTGCCATCGTGCTGAATCTGATTTTCCCACC‑AGAAAAACAGTAA‑TTCACTGGCGGCGGTAAGATAATTACCGCCGCA‑GTCTCACCTC‑TTTAACCATTCCCGCCTTGCGGATTGCGCGTAAATCGTGCCTAACTCCCTTTTGTGCATTTCACGGGa > 2:1216814/1‑239 (MQ=255)
tctcAGCAGCCGCTGATTTTGCAGTTTGCCCCTGAATGGCTGAAAAACCTGCTCTCCTCCGGGAT‑CGCCGCGGGCGGTATTACTGCCATCGTGCTGAATCTGATTTTCCCACC‑AGAAAAACAGTAA‑TTCACTGGCGGCGGTAAGATAATTACCGCCGCA‑GTCTCACCTC‑TTTAACCATTCCCGCCTTGAGGATTCCGCGTAAATCGTGCATAACTCCCTTATGTGCATTTACCGGGATg > 2:1289413/1‑239 (MQ=255)
tctcAGCAGCCGCTGATTTTGCAGTTTGCCCCTGAATGGCTGAAAAACCTGCTCTCCTCCGGGAT‑CGCCGCGGGCGGTATTACTGCCATCGTGCTGAATCTGATTTTCCCACC‑AGAAAAACAGTAA‑TTCACTGGCGCCGGATGAATAATTACCGCCGCA‑GACTCACCCT‑TTGAACCATTCCCGCCTTTGGGATTGCCGACAAATCGTGCATACATCCCTTTTGTACCTTTAACggggag > 1:750860/1‑236 (MQ=255)
gcCGCTGATTTTGCAGTTTGCCCCTGAATGGCTGAAAAACCTGCTCTCCTCCGGGAT‑CGCCGCGGGCGGTATTACTGCCATCGTGCTGAATCTGATTTTCCCACC‑AGAAAAACAGTAA‑TTCACTGGCGGCGGTAAGATAATTACCGCCGCA‑GTCTCACCTC‑TTTAACCATTCCCGCCTTGAGGATTGCGCGTAAATCGTGCATAACTCCCTTATTTGCCTTTCACgg > 2:823935/1‑227 (MQ=255)
ccGCTGATTTTGCAGTTTGCCCCTGAATGGCTGAAAAACCTGCTCTCCTCCGGGAT‑CGCCGCGGGCGGTATTACTGCCATCGTGCTGAATCTGATTTTCCCACC‑AGAAAAACAGTAA‑TTCACTGGCGGCGGTAAGATAATTACCGCCGCA‑GTCTCACCTC‑TTTAACCATTCCCGCCTTGAGGATTGCGCGTAAATCGTGCATAACTCCCTTATGTGCATTTCACGGGCTGGAAGACCAt > 2:761723/1‑239 (MQ=255)
gCTGATTTTGCAGTTTGCCCCTGAATGGCTGAAAAACCTGCTCTCCTCCGGGAT‑CGCCGCGGGCGGTATTACTGCCATCGTGCTGAATCTGATTTTCCCACC‑AGAAAAACAGTAA‑TTCACTGGCGGCGGTAAGATAATTACCGCCGCA‑GTCTCACCTC‑TTTAACCATTCCCGCCTTGAGGATTGCGCGTAAATCGTGCATAACTCCCTTATGTGCATTTCACGGGATGGAAGa > 2:502638/1‑233 (MQ=255)
ttGCCCCTGAATGGCTGAAAAACCTGCTCTCCTCCGGGAT‑CGCCGCGGGCGGTATTACTGCCATCGTGCTGAATCTGATTTTCCCACC‑AGAAAAACAGTAA‑TTCACTGGCGGCGGTAAGATAATTACCGCCGCC‑GTCTCAACTC‑TTTAACCATTCCCGCCTTGAGGATTTCGCGTAAATCGTGCCTAACTCCCTTTTTGTCCTTTCACGGGTTGGAAGACCATGAAATTTATTGGGAAg > 1:1116361/1‑239 (MQ=255)
tGCCCCTGAATGGCTGAAAAACCTGCTCTCCTCCGGGAT‑CGCCGCGGGCGGTATTACTGCCATCGTGCTGAATCTGATTTTCCCACC‑AGAAAAACAGTAA‑TTCACTGGCGGCGGTAAGATAATTACCGCCGCA‑GTCTCACCTC‑TTTAACCATTCCCGCCTTGAGGATTGCGCGTAAATCGTGCATAACTCCCTTATGTGCATTTCACGGGATGGAAGACCATGAAATTTATTgggga > 2:493195/1‑235 (MQ=255)
aaTGGCTGAAAAACCTGCTCTCCTCCGGGAT‑CGCCGCGGGCGGTATTACTGCCATCGTGCTGAATCTGATTTTCCCACC‑AGAAAAACAGTAA‑TTCACTGGCGGCGGTAAGATAATTACCGCCGCA‑GTCTCACCTC‑TTTAACCATTCCCGCCTTGAGGATTGCGCGTAAATCGTGCATAACTCCCTTATGTGCATTTCACGGGATGGAAGACCATGAAATTTATTGGGAAGCTGCTtc > 2:718123/1‑237 (MQ=255)
cTGAAAAACCTGCTCTCCTCCGGGAT‑CGCCGCGGGCGGTATTACTGCCATCGTGCTGAATCTGATTTTCCCACC‑AGAAAAACAGTAA‑TTCACTGGCGGCGGTAAGATAATTACCGCCGCA‑GTCTCACCTC‑TTTAACCATTCCCGCCTTGAGGATTGCGCGTAAATCGTGCATAACTCCCTTCTGTGCATTTCACGGGATGGAAGACCATGAAATTTATTGGGAAGCTGCTTCTCTACAt > 2:815526/1‑239 (MQ=255)
tGAAAAACCTGCTCTCCTCCGGGAT‑CGCCGCGGGCGGTATTACTGCCATCGTGCTGAATCTGATTTTCCCACC‑AGAAAAACAGTAA‑TTCACTGGCGGCGGTAAGATAATTACCGCCGCA‑GTCTCACCTC‑TTTAACCATTCCCGCCTTGAGGATTGCGCGTAAATCGTGCATAACTCCCTTATGTGCATTTCACGGGATGGAAGa > 2:581401/1‑204 (MQ=255)
gAAAAACCTGCTCTCCTCCGGGAT‑CGCCGCGGGCGGTATTACTGCCATCGTGCTGAATCTGATTTTCCCACC‑AGAAAAACAGTAA‑TTCACTGGCGGCGGTAAGATAATTACCGCCGCA‑GTCTCACCTC‑TTTAACCATTCCCGCCTTGAGGATTGCGCGGAAATCGTGCATAACTCCCTTATGTGCATTTCACGGGAGGGAAGACCATGAAATTTATTGGGAAGCTGCTTCTCTACAt > 2:770519/1‑237 (MQ=255)
aaaaaCCTGCTCTCCTCCGGGAT‑CGCCGCGGGCGGTATTACTGCCATCGTGCTGAATCTGATTTTCCCACC‑AGAAAAACAGTAA‑TTCACTGGCGGCGGTAAGATAATTACCGCCGCA‑GTCTCACCTC‑TTTAACCATTCCCGCCTTGCGGATTGCGCGTAAATCGTGCATAACTCCCTTATGTGCATTTCACGGGATGGAAGACCATGAAATTTATTGGGAAACTGCTTCtataacttc > 2:1263230/1‑233 (MQ=255)
aaaCCTGCTCTCCTCCGGGAT‑CGCCGCGGGCGGTATTACTGCCATCGTGCTGAATCTGATTTTCCCACC‑AGAAAAACAGTAA‑TTCACTGGCGGCGGTAAGATAATTACCGCCGCA‑GTCTCACCTC‑TTTAACCATTCCCGCCTTGAGGATTGCGCGTaaa > 2:8324/1‑159 (MQ=255)
cctgcctccccccGGGAC‑CCCCGGGGGGGGTATTCCGGCCCTGGTGCTAAATCGGTTTTCCCCCCA‑AGAAAAACAGTAA‑TTCCTTGGCGGGGGAAAAATAATTACCGCCGCA‑GTCTCACCTC‑TTTAACCATTCCCGCCTTGAGGATTGCGCGTAAATCGTGCATAACTCCCTTATGTGCATTTCACGGGATGGAAGACCATGAAATTTATTGGGAAGCTGCTTCTCTACATTCTCATCg < 2:149936/228‑1 (MQ=255)
cgtctctCCCCGGGTAT‑CGCCGGGGGGGGTATTACTGCCATCGTGCTGAATTTGTTTTTCCCACA‑AAAAAAAATGTAA‑TCCGTGGGGGGCGGTAAGATAATTCCCGCCGCA‑GTCTCACCTC‑TTTAACCATTCCCGCCTTGAGGATTGCGCGTAAATCGTGCATAACTCCCTTATGTGCATTTCACGGGATGGAAGACCATGAAATTTATTGGGAAGCTGCTTCTCTACATTCTCATCGc < 2:1051896/236‑1 (MQ=255)
cTGCTCCCCCCGGGTAC‑CCCCGGGGGGGGTTTTACTCCCTTCTGGGTAAATCTGATTTCCCCACC‑AAAAAAACAGTAA‑TTCCTGGGGGGGGGTAAGATAATTACCGCCGCA‑GTCTCACCTC‑TTTAACCATTCCCGCCTTGAGGATTGCGCGTAAATCGTGCATAACTCCCTTATGTGCATTTCACGGGATGGAAGACCATGAAATTTATTGGGAAGCTGCTTCTCTACATTCTCATCGc < 2:799093/239‑1 (MQ=255)
tGCTCTCCTCCGGGAT‑CGCCGCGGGCGGTATTACTGCCATCGTGCTGAATCTGATTTTCCCACC‑AGAAAAACAGTAA‑TTCACTGGCGGCGGTAAGATAATTACCGCCGCA‑GTCTCACCTC‑TTTAACCATTCCCGCCTTGAGGATTGCGCGTAAATCGTGCATAACTCCCTTATGTGCATTTCACGGGATGGAAGACCATGAAATTTATTGGGAAGCTGCTTTTCTACATTCCCATCGct > 2:984858/1‑239 (MQ=255)
tGCTCTCCTCCGGGAT‑CGCCGCGGGCGGTATTACTGCCATCGTGCTGAATCTGATTTTCCCACC‑AGAAAAACAGTAA‑TTCACTGGCGGCGGTAAGATAATTACCGCCGCA‑GTCTCACCTC‑TTTAACCATTCCCGCCTTGAGGATTGCGCGTAAATCGTGCATAACTCCCTTATGTGCATTTCACGGGATGGAAGACCATGAAATTTATTGGGAAGCGTCTTCTCTACATTCTCATCg > 2:683891/1‑237 (MQ=255)
tcctccGGGAT‑CGCCGCGGGCGGTATTACTGCCATCGTGCTGAATCTGATTTTCCCACC‑AGAAAAACAGTAA‑TTCACTGGCGGCGGTAAGATAATTACCGCCGCA‑GTCTCACCTC‑TTTAACCATTCCCGCCTTGAGGATTGCCCGTAAATCGTGCATAACTCCCTTATGTGCATTTCACGGGATGGaa > 2:625146/1‑188 (MQ=255)
ctccGGGAT‑CGCCGCGGGCGGTATTACTGCCATCGTGCTGAATCTGATTTTCCCACC‑AGAAAAACAGTAA‑TTCACTGGCGGCGGTAAGATAATTACCGCCGCA‑GTCTCACCTC‑TTTAACCATTCCCGCCTTGAGGATTGCGCGTAAATCGTGCATAACTCCCTTATGTGCATTTCACGGGATGGAAGACCATGAAATTTATTGGGAAGCTGCTTCTCTACATTCCCATCGCTCTGTTAg > 2:348090/1‑239 (MQ=255)
cGGGAT‑CGCCGCGGGCGGTATTACTGCCATCGTGCTGAATCTGATTTTCCCACC‑AGAAAAACAGTAA‑TTCACTGGCGGCGGTAAGATAATTACCGCCGCA‑GTCTCACCTC‑TTTAACCATTCCCGCCTTGAGGATTGCGCGTAAATCGTGCATAACTCCCTTATGTGCATTTCACGGGATGGAAGACCATGAAATTTATTGGGAAGCTGCTTCTCTACATTCTCATCGCTCTGTTAGTgg > 2:261592/1‑239 (MQ=255)
gccgcGGGCGGTATTACTGCCATCGTGCTGAATCTGATTTTCCCACC‑AGAAAAACAGTAA‑TTCACTGGCGGCGGTAAGATAATTACCGCCGCA‑GTCTCACCTC‑TTTAACCATTCCCGCCTTGAGGATTTCGCGGAAATCGTGCAAAACTTCCTTATGTGCATTTCACGGGGTGGAAGACCATGGAATTTATTGGGAAGCTGGTTTTTTACATTATCATCGCTCTTGTTGTGGccgctgc > 1:1261610/1‑233 (MQ=255)
gccgcGGGCGGTATTACTGCCATCGTGCTGAATCTGATTTTCCCACC‑AGAAAAACAGTAA‑TTCACTGGCGGCGGTAAGATAATTACCGCCGCA‑GTCTCACCTC‑TTTAACCATTCCCGCCTTGAGGATTGCGCGTAAATCGTGCATAACTCCCTTATGTGCATTTCACGGGATGGAAGACCATGAAATTTATTGGGAAGCTGCTTCTCTACCTTCTCATCGCTCTGTTAGTGGCGAT‑TGc > 2:530748/1‑239 (MQ=255)
ccggggggggttttccgccattCGTGCTGAATCTGATTTCCCCACC‑AAAAAAACAGTAA‑TCCACGGGGGGCGGAAAGATAATGCCCGCCGCA‑GTCTCACCTC‑TTTAACCATTCCCGCCTTGAGGATTGCGCGTAAATCGTGCATAACTCCCTTATGTGCATTTCACGGGATGGAAGACCATGAAATTTATTGGGAAGCTGCTTCTCTACATTCTCATCGCTCTGTTAGTGGCGAT‑CGCt < 2:1176602/218‑1 (MQ=255)
ggggggTATTCGTGCCTTGGTGCTGATTTTGATTTCCCCCCA‑AAAAAAACAGTAA‑TTCACGGGCGGCGGAAAGATATTTCCCGCCGCA‑GTCTCACCTC‑TTTAACCATTCCCGCCTTGAGGATTGCGCGTAAATCGTGCATAACTCCCTTATGTGCATTTCACGGGATGGAAGACCATGAAATTTATTGGGAAGCTGCTTCTCTACATTCTCATCGCTCTGTTAGTGGCGAT‑CGCTGGc < 2:792054/238‑1 (MQ=255)
gcgtTATTACTGCGATCGTGCTGAATCTGTTTTCCCCACA‑AAAAAACAAGAAA‑TTCACGGGCGGCGGTAAGATAATTACCGCCGCA‑GTCTCACCTC‑TTTAACCATTCCCGCCTTGAGGATTGCGCGTAAATCGTGCATAACTCCCTTATGTGCATTTCACGGGATGGAAGACCATGAAATTTATTGGGAAGCTGCTTCTCTACATTCTCATCGCTCTGTTAGTGGCGAT‑CGCTGGCct < 2:1048059/238‑1 (MQ=255)
tcctccctgctgtcaaaTCTGATTTTCCCCCCAAAAAAAATATGAA‑TTCACGGGGGGGGGTAAGATATTTCCCGCCGCA‑GTCTCCCCTT‑TTTAACCATTCCCGCCTTGAGGATTGCGCGTAAATCGTGCATAACTCCCTTATGTGCATTTCACGGGATGGAAGACCATGAAATTTATTGGGAAGCTGCTTCTCTACATTCTCATCGCTCTGTTAGTGGCGAT‑CGCTGGCCTCTATTttc < 1:761723/224‑1 (MQ=255)
ccATCGTGCTGAATCTGATTTTCCCACC‑AGAAAAACAGTAA‑TTCACTGTCGGCGGTAAGATAATTACCGCCGCA‑GTCTCACCTC‑TTTAACCATTCCCGCCTTGAGGATTGCGCGTAAATCGTGCATAACTCCCTTATGTGCATTTCACGGGATGCGAGACCATGAAATTTATTGGGAAGCTGCTTCTCTACATTCTCATCGCTCTGTAACTGGCGAA‑CACAGGCTTCTATTttctttac > 1:294302/1‑236 (MQ=255)
aTCGTGCTGAATCTGATTTTCCCACC‑AGAAAAACAGTAA‑TTCACTGTCGGCGGTAAGATCATTACCGCCGCA‑GTCTCACCTC‑TTTAACCATTCCCGCCTTGAGGATTGCGCGTGAATCTTGCATCACTACCTTAAGTGCATTTCACGGGATGGAAAAACCTGAAATTTTCTGGGAAGCTGCTTCTCTAACTTCTCATCCCCCCGTTAATGGCGGT‑CACCTGCCTCTATTTTTTTTTGCa > 1:901368/1‑239 (MQ=255)
aTCGTGCTGAATCTGATTTTCCCACC‑AGAAAAACAGTAA‑TTCACTGGCGGCGGTAAGATAATTACCGCCGCA‑GTCTCACCTC‑TTTAACCATTCCCGCCTTGAGGATTGCGCGTAAATCGTGCATAACTCCCTTATGTGCATTTCACGGGATGGAAGACCATGAAATTTATTGGGAAGCTGCTTCTCTACATTCTCATCGCTCTGTTAGTGGCGAT‑CGCTGGCCTCTATTTTCTTCTGCa > 2:368997/1‑239 (MQ=255)
aTCGTGCTGAATCTGATTTTCCCACC‑AGAAAAACAGTAA‑TTCACTGGCGGCGGTAAGATAATTACCGCCGCA‑GTCTCACCTC‑TTTAACCATTCCCGCCTTGAGGATTGCGCGTAAATCGTGCATAACTCCCTTATGTGCATTTCACGGGATGGAAGACCATGAAATTTATTGGGAAGCTGCTTCTCTACATTCTCATCGCTCTGTTAGTGGCGAT‑CCCTGGCCTCTATTTTTTTCTTCa > 2:1128734/1‑239 (MQ=255)
aTCGTGCTGAATCTGATTTTCCCACC‑AGAAAAACAGTAA‑TTCACTGGCGGCGGTAAGATAATTACCGCCGCA‑GTCTCACCTC‑TTTAACCATTCCCGCCTTGAGGATTGCCCGTAAATCGTGCATAACTCCCTTATTTGCATTTCACGGGATGGAAGACCATGAAATTTATTGGGAAGCTGCTTCTCTACATTCTCCTCGCTCCGTTAGTGCCGAT‑CCCTTGCCCCTTTTttctttctca > 1:841145/1‑234 (MQ=255)
cGTGCTGAATCTGATTTTCCCACC‑AGAAAAACAGTAA‑TTCACTGGCGGCGGTAAGATAATTACCGCCGCA‑GTCTCACCTC‑TTTAACCATTCCCGCCTTGAGGATTGCGCGTAAATCTTGCCTAACTCCCTTATGTGCATTTCACAGGATGGAAGGCCCTGAAATTTATTGGGAAACTGCTTCTCTACATTCTCATCCCCCTGTTAGTGACGAT‑AGCTGGCCTCTATTTttttctccca > 2:702873/1‑234 (MQ=255)
cGTGCTGAATCTGATTTTCCCACA‑AGAAAAACAGTAA‑TTCACTGGCGGCGGTAAGATAATTACCGCCGCA‑GTCTCACCTC‑TTTAACCATTCCCGCCTTAAGGATTGCCCGTAAATCGTCCATAACTCCCTTATATGCATTTCACAGGATGGCAGACCATGAAATTTATTGTGAATGTGCTTCTCTACATTCTCATCGCCATGGTAGTGGCCAT‑CGCTCGCCCCTATTAttttcttaaa > 1:305953/1‑234 (MQ=255)
tgttgattctatttcccccACC‑AAAAAAACATAAA‑TTCACTGGCGGTCGAAAGAAATTTACCGCCGCT‑GTCTCACCTC‑TTTAACCATTCCCGCCTTGAGGATTGCGCGTAAATCGTGCATAACTCCCTTATGTGCATTTCACGGGATGGAAGACCATGAAATTTATTGGGAAGCTGCTTCTCTACATTCTCATCGCTCTGTTAGTGGCGAT‑CGCTGGCCTCTATTTTCTTCTGCAAAcc < 2:1056286/223‑1 (MQ=255)
tgcgtaaTTTGTTTTCCCCACG‑AAAAAAACTTTAT‑TGCATTGGGGGGGTAAAGATAATTCCCGGCCGA‑GTCTCACCTC‑TTTAACCATTCCCGCCTTGAGGATTGCGCGTAAATCGTGCATAACTCCCTTATGTGCATTTCACGGGATGGAAGACCATGAAATTTATTGGGAAGCTGCTTCTCTACATTCTCATCGCTCTGTTAGTGGCGAT‑CGCTGGCCTCTATTTTCTTCTGCAAAcc < 1:995033/234‑1 (MQ=255)
aaTCTGATTTTCCCACC‑AGAAAAACAGTAA‑TTCACTGGCGGAGGTAAGATAATTACCGCCGCA‑GTCTCACCTC‑TTTAACCATTCCCGCCTTGAGGATTGCGCGTAAATCGTGCATAACTCCCTTATGTGCATTTCACGGGATGGTAGACCATGAAATTTCTTGGGAAACTGCTTCTCTCAATTTGCTTCGCTCTGTTAGTGGGGATCCGCT‑GACTCTATTTTCTTCTGCAAACCCCCtt > 1:877222/1‑238 (MQ=255)
aTCTGATTTTCCCACC‑AGAAAAACAGTAA‑TTCACTGGCGGCGGTAAGATAATTACCGCCGCA‑GTCTCACCTC‑TTTAACCATTCCCGCCTTGAGGATTGCGCGTAAATCGTGCATAACTCCCTTATGTGCATTTCACGGGATGGGAGACCATGAAATTTCTTGGGAAGCTGCTTCTCTACCTTCTCATCGCACTGTTAATGGCGTT‑CCATGGCCTCACTTTTCTTCTGCAAACCCGCTgg > 2:580015/1‑239 (MQ=255)
atgtgttttCCCCCCAAAAAAAACAATAA‑TTCAGTGGGGGCTGTAATAAAATGCCCGCCGCG‑TTCTCACCTC‑GTTAACCATTCCCGCCTTGAGGATTGCGCGTAAATCGTGCATAACTCCCTTATGTGCATTTCACGGGATGGAAGACCATGAAATTTATTGGGAAGCTGCTTCTCTACATTCTCATCGCTCTGTTAGTGGCGAT‑CGCTGGCCTCTATTTTCTTCTGCAAACCCGCTg < 2:512538/233‑1 (MQ=255)
taTTTCCCCCCA‑AAAAAAACAGAAA‑TGCACGGGGGGCGGAAAGAAAATTCCCGCCGCA‑GTCTCACCTC‑TTTAACCATTCCCGCCTTGAGGATTGCGCGTAAATCGTGCATAACTCCCTTATGTGCATTTCACGGGATGGAAGACCATGAAATTTATTGGGAAGCTGCTTCTCTACATTCTCATCGCTCTGTTAGTGGCGAT‑CGCTGGCCTCTATTTTCTTCTGCAAACCCGCTGGGGAg < 2:386157/238‑1 (MQ=255)
gATTTCCCCCCC‑AAAAAAACGTTAT‑TTCCGTGGGGGCGGAAAGATAATTCCCGCCGCA‑GTCTCACCTC‑TTTAACCATTCCCGCCTTGAGGATTGCGCGTAAATCGTGCATAACTCCCTTATGTGCATTTCACGGGATGGAAGACCATGAAATTTATTGGGAAGCTGCTTCTCTACATTCTCATCGCTCTGTTAGTGGCGAT‑CGCTGGCCTCTATTTTCTTCTGCAAACCCGCTGGGGAg < 2:1116361/239‑1 (MQ=255)
gttttCCCCCCAAGAAAACCAGTAA‑TCCCCTGGCGGGGATAGGATAATTACCGCCGCA‑GTCTCACCTC‑TTTACCCATTCCCGCCTTGAGGATTGCGCGTAAATCGTGCATAACTCCCTTATGTGCATTTCACGGGATGGAAGACCATGAAATTTATTGGGAAGCTGCTTCTCTACATTCTCATCGCTCTGTTAGTGGCGAT‑CGCTGGCCTCTATTTTCTTCTGCAAACCCGCTGGGGAg < 2:829832/238‑1 (MQ=255)
gtttcCCCACC‑AAAAAGAAAGTAAGTCCCCGGGCGGCGGTAGGATATTGCCCGCCGCA‑GTCTCACCAC‑TTGAGCCATTCCCGCCTTGAGGATTGCGCGTAAATCGTGCATAACTCCCTTATGTGCATTTCACGTGATGGAAGACCAGGAAATTTATTGGGAAGCTGCTTCTCTACATTCTCATCGCTCTGTTAGTGGCGAT‑CGCTGGCCTCTATTTTCTTCTGCAAACCCGCTGGGGAg < 2:656751/238‑1 (MQ=255)
ccccACC‑AAAAAAACATTAA‑TTCGTGGGCGGGGTTAAGATAATTCCCGCCGCA‑GTCTCACCTC‑TTTAACCATTCCCGCCTTGAGGATTGCGCGTAAATCGTGCATAACTCCCTTATGTGCATTTCACGGGATGGAAGACCATGAAATTTATTGGGAAGCTGCTTCTCTACATTCTCATCGCTCTGTTAGTGGCGAT‑CGCTGGCCTCTATTTTCTTCTGCAAACCCGCTGGGGAGCAGaa < 2:474545/238‑1 (MQ=255)
cccACC‑AGAAAAACAGTCA‑TTCACTTGCGGCGGTAAGATAATTACCGCCGCA‑GTCTCACCTC‑TTTAACCATTCACGCCTTGAGGATTGCGCGTAAATCGTGCATCACTCCCTTATGTGCATTTCACGGGATGGAAGACCCTTAAATTTATTGGGAAGCTGTCTCTCTACATTATCATCGCTCTGTTTGTGGCGAT‑CCCTGGGCTCTTTTTTTTTTCACAAAcccacgtgggggaagaca > 1:334601/1‑224 (MQ=255)
acc‑aGAAAAACAGTAA‑TTCACTGGCGGCGGTAAGATAATTACCGCCGCA‑GTCTCACCTC‑TTTAACCATTCCCGCCTTGAGGATTGCGCGTAAATCGTGCATAACTCCCTTATGTGCATTTCACGGGATGGAAGACCATGAAATTTATTGGGAAGCTGCTTCTCTACATTCTCATAGCTCTGTTAGTTGCGAT‑GGCTGGCATCTATTTTTTTCTTCAAAACCCCTGGGGAGCaaaaataa > 2:544100/1‑235 (MQ=255)
cc‑aGAAAAACAGTAA‑TTCACTGGCGGCGGTAAGATAATTACCGCCGCA‑GTCTCACCTC‑TTTAACCATTCCCGCCTTGAGGATTGCGCGTAAATCGTGCATAACTCCCTTATGTGCATTTCACGGGATGGAAGACCATGAAATTTATTGGGAAGCTGCTTCTCTACATTCTCATCGCTCTGTTAGTGGCGAT‑CGCTGGCCTCTATTTTCTTCTGCAAACCCGCTGGGGGGCAGAACata > 2:760863/1‑238 (MQ=255)
cc‑aAAAAAACGTTAT‑TTCAGTGGGGGCGGAAAGATAATTACCGCCGCA‑GTCTCACCTC‑TTTAACCATTCCCGCCTTGAGGATTGCGCGTAAATCGTGCATAACTCCCTTATGTGCATTTCACGGGATGGAAGACCATGAAATTTATTGGGAAGCTGCTTCTCTACATTCTCATCGCTCTGTTAGTGGCGAT‑CGCTGGCCTCTATTTTCTTCTGCAAACCCGCTGGGGAGCAGAACatat < 2:22340/239‑1 (MQ=255)
acaaaaaaaCAGTAA‑TCCCGTGGCGGGGGAAAGAAAATGACCGCCGCA‑GTCTCACCTC‑TTTAACCATTCCCGCCTTGAGGATTGCGCGTAAATCGTGCATAACTCCCTTATGTGCATTTCACGGGATGGAAGACCATGAAATTTATTGGGAAGCTGCTTCTCTACATTCTCATCGCTCTGTTAGTGGCGAT‑CGCTGGCCTCTATTTTCTTCTGCAAACCCGCTGGGGAGCAGAACatat < 2:841145/235‑1 (MQ=255)
aaatatata‑TTCTCGGGCGGCAGAAAGAAAGTTCCCTCCGCG‑TTCTCTCCTC‑TTTAACCATTTCCGCCTTGAGGATTGCGCGTAAATCGTGCATAACTCCCTTATGTGCATTTCACGGGATGGAAGACCATGAAATTTATTGGGAAGCTGCTTCTCTACATTCTCATCGCTCTGTTAGTGGCGAT‑CGCTGGCCTCTATTTTCTTCTGCAAACCCGCTGGGGAGCAGAACATATCAgcgc < 1:815526/231‑1 (MQ=255)
gTAA‑TTCACTGGCGGCGGTAAGATAATTACCGCCGCA‑GTCTCACCTC‑TTTAACCATTCCCGCCTTGAGGATTGCGCGTAAATCGTGCATAACTCCCTTATGTGCATTTCACGGGATGGAAGACCATGAAATTTATTGGGAAGCTGCTTCTCTACATTCTCATCGCTCTGTTAGTGGCGAT‑CGCTGGCCTCTATTTTCTTCTGCAAACCCGCTGGGGGGCAGAACATATCAGCGCCTggg > 2:615079/1‑239 (MQ=255)
taatttcccggggggcggTAAGATATTCCCCGCCGAA‑GTCTCACCTC‑TTTAACCATTCCCGCCTTGAGGATTGCGCGTAAATCGTGCATAACTCCCTTATGTGCATTTCACGGGATGGAAGACCATGAAATTTATTGGGAAGCTGCTTCTCTACATTCTCATCGCTCTGTTAGTGGCGAT‑CGCTGGCCTCTATTTTCTTCTGCAAACCCGCTGGGGAGCAGAACATATCAGCGCATggg < 2:1261610/226‑1 (MQ=255)
attccACTGGCGGGGTAAAGATATTTCCCGGCGCA‑GTCTAACCTC‑TTTAACCATTCCCGCCTTGAGGATTGCGCGTAAATCGTGCATAACTCCCTTATGTGCATTTCACGGGATGGAAGACCATGAAATTTATTGGGAAGCTGCTTCTCTACATTCTCATCGCTCTGTTAGTGGCGAT‑CGCTGGCCTCTATTTTCTTCTGCAAACCCGCTGGGGAGCAGAACATATCAGCGCATGGGtt < 2:953898/235‑1 (MQ=255)
cACTGGCGGCGGTAAGATAATTACCGCCGCA‑GTCTCACCTC‑TTTAACCATTCCCGCCTTGAGGATTGCGCGTAAATCGTGCAGAACTCCCTTATGCGCATTTCACGGGATGGAAGACCATGCAATTTATTGGGAAGCTGCTTCTCTACATTCTCATCCCTCTGTTAGTGACGTT‑CGCTGGCCTCTATTTTCTTCTGCAAACCCACCGGGGGGCAGAACAAAACAGCGAATGGGTTTccc > 1:946614/1‑238 (MQ=255)
tGGCGGCGGTAAGATAATTACCGCCGCA‑GTCTCACCTC‑TTTAACCATTCCCGCCTTGAGGATTGCGCGTAAATCGTGCATAACTCCCTTATTTGCATTTCACGGGATGGAAGACCATGAAATTTATTGGGAAGCTGCTTCTCTACATTCTCATCTCTCTGTTAGTGGCGAT‑CGCTGGCCTCTTTTTTTTTCTTCAAACCCCCTGGGGGGCCGAACATATAAGCCCGTGGGTTTcccaaa > 1:885426/1‑235 (MQ=255)
tGGCGGCGGTAAGATAATTACCGCCGCA‑GTCTCACCTC‑TTTAACCATTCCCGCCTTGAGGATTGCGCGTAAATCGTGCATAACTCCCTTATGTGCATTTCACGGGATGGAAGACCATGAAATTTATTGGGAAGCTGCTTCTCTACATTCTCATCGCTCTGTTAGTGGCGAT‑CGCTGGCCTCTATTTTCTTCTGCAAACCCGCTggg > 2:1029160/1‑206 (MQ=255)
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CCATCGCCGCCTCCGGTGTGCGTATCGTTTCTCGTGAGCCGCTGAACCGTCGGGCGATTCTGATTATCGCGCTGTCGCTGGCGGTTGGTCTGGGCGT‑GTCTCAGCAGCCGCTGATTTTGCAGTTTGCCCCTGAATGGCTGAAAAACCTGCTCTCCTCCGGGAT‑CGCCGCGGGCGGTATTACTGCCATCGTGCTGAATCTGATTTTCCCACC‑AGAAAAACAGTAA‑TTCACTGGCGGCGGTAAGATAATTACCGCCGCA‑GTCTCACCTC‑TTTAACCATTCCCGCCTTGAGGATTGCGCGTAAATCGTGCATAACTCCCTTATGTGCATTTCACGGGATGGAAGACCATGAAATTTATTGGGAAGCTGCTTCTCTACATTCTCATCGCTCTGTTAGTGGCGAT‑CGCTGGCCTCTATTTTCTTCTGCAAACCCGCTGGGGAGCAGAACATATCAGCGCATGGGTTTCCGAGA > NC_000913/3830112‑3830579
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| Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 24 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
N/A
