Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A2 F9 I0 R1 142 103.7 2603848 81.8% 2129947 227.3

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation freq annotation gene description
RA NC_000913 4,366,216 T→G 13.4% T187P (ACT→CCT)  dcuA ← C4‑dicarboxylate antiporter

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0009134,366,2160TG13.4% 193.5 / 2.6 91T187P (ACT→CCT) dcuAC4‑dicarboxylate antiporter
Reads supporting (aligned to +/- strand):  ref base T (55/21);  new base G (7/8);  total (62/29)
Fisher's exact test for biased strand distribution p-value = 6.96e-02
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00

GATGATCAGGATTGCGTTGGTGGTGTTCATCAGCGGTTTTTCAACCAGACCCA‑TGCTTGGGCTGTTGATGATTGCATAGATAACCACGCCAACTACGCCCAGCAGGAACAGCCAGACGGACGTTTTT‑GCACCGGATTTG‑ATTTCAATC‑TGCTTTTCACCGCGC‑AGTTCAACCAGGCCCTCTTCCA‑GACGCTTGCG‑ATAAATCGGATCGTCA‑GA‑GAGTTTGGAGTTGAACAGCATAGTGACCAGGAAGGACATCACCAGAACCGCCAGCAGGGTGGACGGGATGACCACGGAGAGCAGATGGAGGTAGCTGATGCCATGACCTTCCATCACGGAAGACATGTAAACCACTGCCGCTGAGATTGGCGATGCGGTGATCGCAATCTGCGCGGATACCACTGCAGTAGACAGCGGACGGCA‑AGGTTTAACGCCTTGTTCCTTCGCAACTTCAGCGATAACTGGCAGTGTCGCCAGA  >  NC_000913/4365980‑4366451
                                                                                                                                                                                                                                                     |                                                                                                                                                                                                                                            
ctttttttgttttggtttGGTGGT‑TTAATTAGCTCTTTTTCAACCCGTCCCA‑TGCTTTGGTTTTTGATGATTTGCTAGTTGTCCGCGGCAATTTCGGCCAGATGGAACAGCCACACGGACGTTGTT‑GGACCTGATTTG‑ATTTCAATC‑TGCTTTTCACCCCGC‑AGTTCAACAAGTACCTCTGCCA‑GACTCTTGCG‑ATAAATCGGATCGTCA‑GA‑GAGTTTGGAGGTGAAGAGTATCGTGAc                                                                                                                                                                                                                                           <  1:686512/223‑1 (MQ=255)
      agggATTGCGTTGGTGGTGTTCATCAGCGGTTTTTCAACCAGGCCCA‑TGCTTGGGCTGTTGATGGTTGCATAGATAACCACGCCAACTACGCCCAGCAGGAACAGCCAGACGGACGTTTTT‑GCACCGGATTTG‑ATTTCAATC‑TGCTTTTCACCGCGC‑AGTTCAACCAGGCCCTCTTCCA‑GACGCTTGCG‑ATAAATCGGATCGTCA‑GA‑GAGTTTGGAGTTGAACAGCATAGTGACCagga                                                                                                                                                                                                                                      <  2:517959/237‑1 (MQ=255)
       aGGATTGCGTTGGTGGTGTTCATCAGCGGTTTTTCAACCAGACCCA‑TGCTTGGGCTGTTGATGATTGCATAGATAACCACGCCAACTACGCCCAGCAGGAACAGCCAGACGGACGTTTTT‑GCACCGGATTTG‑ATTTCAATC‑TGCTTTTCACCGCGC‑AGTTCAACCAGGCCCTCTTCCA‑GACGCTTGCG‑ATAAATCGGATCGCCC‑GA‑GGGTTTGGGGTTGAACAGCAAAGTGCCCgggaa                                                                                                                                                                                                                                     >  2:1243782/1‑239 (MQ=255)
           tttgttttgtgttttgtcttaccGGTTTTTCCACCAGACCCA‑TGCTTGGGCTTGTGAGTATGGCATATGTAACCCCGCCAACTACGCCCAGCAGTACCAGCTAGACTGACGTTTTT‑GCACCGGATTTG‑ATTTCATTC‑TGCTTTTCACCGCGC‑AGTTCAACCAGGCCCTCTGCCA‑GACGCTTGCG‑ATAAATCGGATCGTCA‑GA‑GAGTTTTGAGTTGAACAGCATAGTGACCAGGAAGGAc                                                                                                                                                                                                                                 <  1:319472/217‑1 (MQ=255)
           aggaacaggtggtGTTCATCAGCGGTTTTTCAACCAGACCCA‑TGCTTGGGCTGTTGATGATTGCATAGATAACCACGCCAACTACGCCCAGCAGGAACAGCCAGACGGACGTTTTT‑GCACCGGATTTG‑ATTTCAATC‑TGCTTTTCACCGCGC‑AGTTCAACCAGGCCCTCTTCCA‑GACGCTTGCG‑ATAAATCGGATCGTCA‑GA‑GAGTTTGGAGTTGAACAGCATAGTGACCAGGAAGGAc                                                                                                                                                                                                                                 <  2:986652/232‑1 (MQ=255)
              cGTTGGTGGTGTTCATCAGCGGTTTTTCAACCAGACCCA‑TGCTTGGGCTGTTGATGATTGCATAGATAACCACGCCAACTACGCCCAGCAGGAACAGCCAGACGGACGTTTTT‑GCACCGGATTTG‑ATTTCAATC‑TGCTTTTCACCGCGC‑AGTTCAACCAGGCCCTCTTCCA‑GACGCTTGCG‑ATAAATCGGATCGTCA‑GA‑GAGTTTGGAGTTGAACAGCATAGTGACCaggaaggcaat                                                                                                                                                                                                                               >  2:128868/1‑234 (MQ=255)
              cGTTGGTGGTGTTCATCAGCGGTTTTTCAACCAGACCCA‑TGCTTGGGCTGTTGATGATTGCATAGATAACCACGCCAACTACGCCCAGCAGGAACAGCCAGACGGACGTTTTT‑GCACCGGATTTG‑ATTTCAATC‑TGCTTTTCACCGCGC‑AGTTCAACCAGGCCCTCTTCCA‑GACGCTTGCG‑ATAAATCGGATCGTCA‑GA‑GAGTTTGGAGTTGAACAGCATAGTGACCAGGAAGGACAt                                                                                                                                                                                                                               >  2:942780/1‑238 (MQ=255)
              cGTTGGTGGTGTTCATCAGCGGTTTTTCAACCAGACCCA‑TGCTTGGGCTGTTGATGATTGCATAGATAACCACGCCAACTACGCCCAGCAGGAACAGCCAGACGGACGTTTTT‑GCACCGGATTTG‑ATTTCAATC‑TGCTTTTCACCGCGC‑AGTTCAACCAGGCCCTCTTCCA‑GACGCTTGCG‑ATAAACCGGATCGTCC‑GA‑GAGTTTGGAGTTGAACAGCATAGTGACCAGGAAGGACAt                                                                                                                                                                                                                               >  2:943309/1‑238 (MQ=255)
                   gtggtgTTCATCAGCGGTTTTTCAACCAGACCCA‑TGCTTGGGCTGTTGATGATTGCATAGATAACCACGCCAACTACGCCCAGCAGGAACAGCCAGACGGACGTTTTT‑GCACCGGATTTG‑ATTTCAATC‑TGCTTTTCACCGCGC‑AGTTCAACCAGGCCCTCTTCCA‑GACGCTTGCG‑TTAAATCGGATCGTAT‑GA‑GCGTTTGGAGTTGAACACCCTAGTGACAAGGAAGGGAATCCCCAg                                                                                                                                                                                                                         >  2:856671/1‑239 (MQ=255)
                   gtggtgTTCATCAGCGGTTTTTCAACCAGACCCA‑TGCTTGGGCTGTTGATGATTGCATAGATAACCACGCCAACTACGCCCAGCAGGAACAGCCAGACGGACGTTTTT‑GCACCGGATTTG‑ATTTCAATC‑TGCTTTTCACCGCGC‑AGTTCAACCAGGCCCTCTTCCA‑GACGCTTGCG‑CTAAATCGGATCGCCA‑GA‑GAGTTTGGGGTTGAACAGCCTAGGGACCAGGAAGGACATCACCac                                                                                                                                                                                                                         >  2:1258799/1‑238 (MQ=255)
                        gtTCATCAGCGGTTTTTCAACCAGACCCA‑TGCTTGGGCTGTTGATGATTGCATAGATAACCACGCCAACTCCGCCCAGCAGGAACAGCCAGACGGACGGTTTT‑GCACCGGATTTG‑ATTTCAATC‑TGCTTTTCACCGCGC‑AGTTCAACCAGGCCCTCTTCCC‑GACGCTTGCG‑ATAAATCGGATCGTCA‑GA‑GAGTTTGTAGTTGAAAAGCAAAGTGACCagaaagaaaaaaaccaaaacag                                                                                                                                                                                                                    >  1:487397/1‑223 (MQ=255)
                        gtTCATCAGCGGTTTTTCAACCAGACCCA‑TGCTTGGGCTGTTGATGATTGCATAGATAACCACGCCAACTACGCCCAGCAGGAACAGCCAGACGGACGTTTTT‑GCACCGGATTTG‑ATTTCAATC‑TGCTTTTCACCGCGC‑AGTTCAACCAGGCCCTCTTCCA‑GACGCTTGCG‑ATAAATCGGATCGTCA‑GA‑GAGTTTGGAGTTGAACAGCATAGTGACAAGGAAGGACTTCACACGAAcc                                                                                                                                                                                                                     >  2:450503/1‑238 (MQ=255)
                         ttCATCAGCGGTTTTTCAACCAGACCCA‑TGCTTGGGCTGTTGATGATTGCATAGATAACCACGCCAACTACGCCCAGCAGGAACAGCCAGACGGACGTTTTT‑GCACCGGATTTG‑ATTTCAAGC‑TGCTTTTCACCGCGC‑AGTTCAACCAGGCCCTCTTCCC‑GACGCTTGGG‑ATAAAACGGAACGTCA‑GC‑GAGTTTGGAGTTGACAAGCACAGTGACCCGGAAAGAAATCACCAAAAACGc                                                                                                                                                                                                                   >  1:900197/1‑239 (MQ=255)
                             tcaGCGGTTTTTCAACCAGACCCA‑TGCTTGGGCTGTTGATGATTGCATAGATAACCACGCCAACTAAGCCCAGCAGGAACAGCCAGACGGACGTTTTT‑GCACCGGATTTG‑ATTTCAATC‑TGCTTTTCACCGCGC‑AGTTCAACCAGGCCCTCTTCCC‑GACGCTTGCG‑ATAAATCGGATCGTCA‑GA‑GGGTTTGGGGTTGAAAAGAATAGGGAACAGGAAGGACAGCACCAGAACCGCcagc                                                                                                                                                                                                               >  2:485516/1‑239 (MQ=255)
                              caGCGGTTTTTCAACCAGACCCA‑TGCTTGGGCTGTTGATGATTGCATAGATAACCACGCCAACTACGCCCCGCAGGAACAGCCAGACGGACGTTTTT‑GCACCGGATTTG‑ATTTCAATC‑TGCTTTTCACCGCGC‑AGTTCAACCCGGCCCTCTTCCA‑GACGCTTGCG‑ATAATTCCGATGGTTA‑GG‑GAGTTTGGGGTTGAACAGCACTGGGACCaggagggcacaaacacaaacaggcgtct                                                                                                                                                                                                              >  1:986652/1‑218 (MQ=255)
                                 cGGTTTTTCAACCAGACCCA‑TGCTTGGGCTGTTGATGATTGCATAGATAACCACGCCAACTACGCCCAGCAGGAACAGCCAGACGGACGTTTTT‑GCACCGGATTTG‑ATTTCAATC‑TGCTTTTCACCGCGC‑AGTTCAACCAGGCCCTCTTCCA‑GACGCTTGCG‑ATAAATCGGATCGTCA‑GA‑GAGTTTGGAGTTGAACAGCATAGTGACCAGGAAGGACATCACCAGAACCGCCAGCAggg                                                                                                                                                                                                           >  2:721451/1‑239 (MQ=255)
                                    tttttCAACCA‑ACCCATTGCTTGGGCTGTTGATGATTGCATAGATAACCACGCCAACTACGCCCAGCAGGAACAGCCAGACGGACTTTTTT‑GCCCCGGATTTG‑ATTTCAACC‑TGCTTTTCCCCGCGC‑AGTTCAACCAGGCCCTCTTCCA‑GACGCTTGCG‑ATAAATCGGATCGTCA‑GA‑GATTTTGGAGTTGAACAGCATAGTGACCAGGAAGGACATCACCAGAACCGCCAGCAGGGTg                                                                                                                                                                                                         <  2:168058/238‑1 (MQ=255)
                                      tttCAACCAGACCCA‑TGCTTGGGCTGTTGATGATTGCATAGATAACCACGCCAACTACGCCCAGCAGGAACAGCCAGACGGACGTTTTT‑GCACCGGATTTG‑ATTTCAATC‑TGCTTTTCACCGCGC‑AGTTCAACCAGGCCCTCTTCCA‑GACGCTTGCG‑ATAAATCGGATCGTCA‑GA‑GAGTTTGGAGTTGAACAGCATAGGGACCAGGAAGGCCACCCCCAGAACCGCCAGCAGGGTGTAc                                                                                                                                                                                                      >  2:1255898/1‑239 (MQ=255)
                                                aCCCA‑TGCTTGGGCTGTTGATGATTGCATAGATAACCACGCCAACTACGCCCAGCAGGAACAGCCAGACGGACGTTTTT‑GCACCGGATTTG‑ATTTCAATC‑TGCTTTTCACCGCGC‑AGTTCAACCAGGCCCTCTTCCA‑GACGCTTGCG‑ATAAATCGGATCGTCA‑GA‑GAGTTTGGAGTTGAACAGCATAGTGACCAGGAACGACATCACCAGAACCGCCAGCAGGGTGGCCGGGATGAca                                                                                                                                                                                             >  2:71480/1‑237 (MQ=255)
                                                aCCCA‑TGCTTGGGCTGTTGATGATTGCATAGATAACCACGCCAACTACGCCCAGCAGGAACAGCCAGACGAACGTTTTT‑GCACCGGATTTG‑ATTTCAATC‑TGCTTTTCACCGCGC‑AGTTCAACCAGGCCCTCTTCCA‑GACGCTTGCG‑ATAAATCGGATCGTCA‑GA‑GAGTTTGGAGTTGAACAGCATAGTGACCAGGAAAGAAATCACCAGAACCGCCAGCAGGGGGGGCggggaggca                                                                                                                                                                                             >  1:502490/1‑232 (MQ=255)
                                                   ccctGCTTGGGTTTTTGTTGATTGATGAAATAACACCCCCAACTACACCCAGCAGGAAC‑GCCACACCGGCGTTTTTGGCCCCGGATTTG‑ATTTCAACC‑TGCTTTTCACCGCGC‑AGTCCAACCAGGCCCTCTTCCA‑GACTCTTGCG‑AAAAATCGGATCGTCA‑GA‑AAGTTGGGAGTTGACCAGCATAGTGACGAGGAAGGACACCACCAGAACCGCCAGCAGGGTGGACGGGATGACCACg                                                                                                                                                                                          <  1:450503/236‑1 (MQ=255)
                                                           tggCTGTTGATGATTGCATAGATAACCACGCCAACTACGCCCAGCAGGAACAGCCAGACGGACGTTTTT‑GCACCGGATTTG‑ATTTCAATC‑TGCTTTTCACCGCGC‑AGTTCAACCAGGCCCTCTTCCT‑GACGCTTGCG‑ATAATTCGGATCTGCA‑CA‑GGGTTTGGAGTTGAACAGCCAAGGGACCAGGAAGAGCATCACCACAACCGGACGCAGGGGGGGCAGGATGACAAAGGagagaca                                                                                                                                                                                  >  1:1260883/2‑236 (MQ=255)
                                                           gggCTGTTGATGATTGCATAGATAACCACGCCAACTACGCCCAGCAGGAACAGCCAGACGGACGTTTTT‑GCACCGGATTTG‑ATTTCAATC‑TGCTTTTCACCGCGC‑AGTTCAACCAGGCCCTCTTCCA‑GACGCTTGCG‑ATAAATCGGATCGTCA‑GA‑GAGTTTGGAGTTGAACAGCATAGTGACCAGGAAGGACATCACCAGAACCGCCAGCAGGGTGGACGGGATGACCACGGAGAGCAg                                                                                                                                                                                  >  2:765574/1‑239 (MQ=255)
                                                           gggCTGTTGATGATTGCATAGATAACCACGCCAACTACGCCCAGCAGGAACAGCCAGACGGACGTTTTT‑GCACCGGATTTG‑ATTTCAATC‑TGCTTTTCACCGCGC‑AGTTCAACCAGGCCCTCTTCCA‑GACGCTTGCG‑ATAAATCGGATCGTCA‑GA‑GAGTTTGGAGTTGAACAGCATAGTGACCAGGAAGGACATCACCAGAACCGCCAGCAGGGTGGAAGGGATGACACCGgagacaag                                                                                                                                                                                  >  2:851263/1‑235 (MQ=255)
                                                             gCTTTTGATTATTGCATAAATACCCACGCCAAATCCCCCCAGCAGGAACAGCCAGCCGGACTTTTTT‑GACCCGGTTTTT‑ATTT‑AATCTTGCTTTCCCCCGCGC‑ATTTCAACCAGGCCCTCTTCCA‑GACGCTTGCG‑ATAAATCGGATCGTCA‑GA‑GAGTTTGGAGTTGAACAGCATAGTGACCAGAAAGGACATCACCAGAACCGCCAGCAGGGTGGACGGGATGACCACGGAGAGCAGa                                                                                                                                                                                 <  2:1239192/238‑1 (MQ=255)
                                                                 ttGATGATTGCATAGATAACCACGCCAACTACGCCCAGCAGGAACAGCCAGACGGACGTTTTT‑GCACCGGGTTTG‑ATTTCAATC‑TGCTTTTCACCGCGC‑ATTTCAACCAGGCCCTCTTCCA‑GACGCTTGCG‑ATAAATCGGATCGTCA‑GA‑GAGTTTGGAGTTGAACAGCATAGTGACCCGGAAGGCAATCACCAAAACCGCAAGCAGGGAGGAGGGGAGAACAACGgaaggaaaaggggg                                                                                                                                                                            >  1:487183/1‑227 (MQ=255)
                                                                 ttGATGATTGCATAGATAACCACGCCAACTACGCCCAGCAGGAACAGCCAGACGGACGTTTTT‑GCACCGGATTTG‑ATTTCAATC‑TGCTTTTCACCGCGC‑AGTTCAACCAGGCCCTCTTCCA‑GACGCTTGCG‑ATAAATCGGATCGTCA‑GA‑GAGTTTGGAGTTGAACAGCATAGTGACCAGGAAGGCCATCACCAGAACCGCCAGCAGGGGGGACGGGATGACCACGGAAAGCAAATGGAg                                                                                                                                                                            >  2:95886/1‑239 (MQ=255)
                                                                 ttGATGATTGCATAGATAACCACGCCAACTACGCCCAGCAGGAACAGCCAGACGGACGTTTTT‑GCACCGGATTTG‑ATTTCAATC‑TGCTTTTCACCGCGC‑AGTTCAACCAGGCCCTCTTCCA‑GACGCTTGCG‑ATAAATCGGATCGTCA‑GA‑GAGTTTGGAGTTGAACAGCATAGTGACCAGGAAGGACATCACCAGAACCGCCAGCAGGGTGGACGGGGTGACCACGGAGAGCAGACGGAg                                                                                                                                                                            >  2:192983/1‑239 (MQ=255)
                                                                 ttGATGATTGCATAGATAACCACGCCAACTACGCCCAGCAGGAACAGCCAGACGGACGTTTTT‑GCACCGGATTTG‑ATTTCAATC‑TGCTTTTCACCGCGC‑AGTTCAACCAGGCCCTCTTCCA‑GACGCTTGCG‑ATAAATCGGATCGTCA‑GA‑GAGTTTGGAGTTGAACAGCATAGTGACCAGGAAGGACATCACCAGAACCGCCAGCAGGGTGGACGGGATGACCACGGAAAGCAGATGGAg                                                                                                                                                                            >  2:73806/1‑239 (MQ=255)
                                                                 ttGATGATTGCATAGATAACCACGCCAACTACGCCCAGCAGGAACAGCCAGACGGACGTTTTT‑GCACCGGATTTG‑ATTTCAATC‑TGCTTTTAACCGCGC‑AGTTCAACCAGGCCCTCTTCCA‑GCCGCTTGCG‑ATAAATCGGATCGTCA‑GA‑GCGTTTGGAGTTGAACAGCATAGTGACCAGGAAGGACATCCCCAGAACCGCCAGAAGGGTGGACGGGATGGCCACGGAGGACAGATgggg                                                                                                                                                                            >  2:1237008/1‑237 (MQ=255)
                                                                       atTGCATAGATAACCACGCCAACTACGCCCAGCAGGAACAGCCAGACGGACGTTTTT‑GCACCGGATTTG‑ATTTCAATC‑TGCTTTTCACCGCGC‑AGTTCAACCAGGCCCTCTTCCA‑GACGCTTGCG‑ATAAATCGGATCGTCA‑GA‑GAGTTTGGAGTTGAACAGCATAGTGACCAGGAAGGACATCACCAGAACCGCCAGCAGGATGGACGGGATGACCACGGAGAGCAGATGGGGGAAGCt                                                                                                                                                                      >  2:568415/1‑239 (MQ=255)
                                                                           cATAGATAACCACGCCAACTACGCCCAGCAGGAACAGCCAGACGGACGTTTTT‑GCACCGGATTTG‑ATTTCAATC‑TGCTTTTCACCGCGC‑AGTTCAACCAGGCCCTCTTCCA‑GACGCTTGCG‑ATAAATCGGATCGTCA‑GA‑GAGTTTGGAGTTGAACAGCATAGTGACCAGGAAGGACATCACCAGAACCGCCAGCAGGGTGGACGGGATGACCACGGAGAGCAGATGGAGGTAGCTGAt                                                                                                                                                                   >  2:607707/1‑238 (MQ=255)
                                                                           cATAGATAACCACGCCAACTACGCCCAGCAGGAACAGCCAGACGGACGTTTTT‑GCACCGGATTTG‑ATTTCAATC‑TGCTTTTCACCGCGC‑AGTTCAACCAGGCCCTCTTCCA‑GACGCTTGCG‑ATAAATCGGATCGTCA‑GA‑GAGTTTGGAGTTGAACAGCATAGTGACCAGGAAGGACATCACAAGAACCGCAAGCGGGGTGGACGGGATGACCACGGAAAGCAAAAGAAGGAAGCGGag                                                                                                                                                                   >  1:1229080/1‑237 (MQ=255)
                                                                           cATAGATAACCACGCCAACTACGCCCAGCAGGAACAGCCAGACGGACGTTTTT‑GCACCGGATTTG‑ATTTCAATC‑TGCTTTTCACCGCGC‑AGTTCAACCAGGCCCTCTTCCA‑GACGATTGCG‑ATAAATCGGATCGTCC‑AA‑AAGTTTGGAGTTGAACAGCATAGGGACCAGGAAGGAAATCACCCAAACCGCCAGACGGGTGGAAGGGAGTAACACGgaggagacagtgggggaaccaat                                                                                                                                                                   >  1:427418/1‑218 (MQ=255)
                                                                               gaaaaCCACGCCAATTACCCCAAGCAGGAACGGCCAGCCGGACTTTTTT‑CACCCGGTTTTG‑TTTCAAATC‑TGTTGTCCACCGCGA‑AGTTCAACAGGGCCCTCTTCCA‑GACGCTTGCA‑TAAAATGGGATCGTCA‑GA‑GAGTTTGGAGTTGAACAGAATAGTGACCGGGAAGGACATCCCCAGAACCGCCAGCAGGGTGGACGGGATGACCACGGAGAGCAGATGGAGGTAGCTGATGCCAt                                                                                                                                                              <  2:75678/236‑1 (MQ=255)
                                                                                 tAACCCCGCCAACACCGCCCAGATGGACCACCCAGCCCGCTTTTGTC‑GCCCCTCATTTA‑CTTCAAATC‑TGCTTAGCCCCGCGG‑AGGTCAACCAGCCCCATGTCC‑‑GACCGTTGGGAAAAAATCGGATCGACA‑GA‑GAGTTGGGATGTGAACAGCATGGTGCCCAGGAAGAAAAACACCAGAACCGCCAGCAGGGTGGACGGGATGACCACGGAGAGCAGATGGAGGTAGCTGATGCCAt                                                                                                                                                              <  1:139858/237‑1 (MQ=255)
                                                                                 tAACCCCGCAAATTACGCCCAGCAGGAACGGCCAGCCGGACGTTTTT‑GCCCCGGATTTG‑ATTCCAATC‑TGTTTTTCCCCGGGC‑ATTTCAACCAGCCCCTCTTCCA‑GACGCTTGCG‑ATAAATCGGATCGTCA‑GA‑GAGTTTGGAGTTGAACAGCATAGTGACCAGGAAGGACATCACCAGAACCGCCAGCAGGGTGGACGGGATGACCACGGAGAGCAGATGGAGGTAGCTGATGCCAt                                                                                                                                                              <  2:900197/237‑1 (MQ=255)
                                                                                       cGCCAACTACGCCCAGCAGGAACAGCCAGACGGACGTTTTT‑GCACCGGATTTG‑ATTTCAATC‑TGCTTTTCACCGCGC‑AGTTCAACCAGGCCCTCTTCCA‑GACGCTTGCG‑ATAAATCGGATCGTCA‑GA‑GAGTTTGGAGTTGAACAGCATAGTGACCAGGAAGGACATCACCATAACCGCCAGCAGGGTGGACGGGATGACCACGGAGAGCAGATGGAGGTAGCTGATGCCATGACCTTcc                                                                                                                                                      >  2:235492/1‑239 (MQ=255)
                                                                                       cGCCAACTACGCCCAGCAGGAACAGCCAGACGGACGTTTTT‑GCACCGGATTTG‑ATTTCAATC‑TGCTTTTCACCGCGC‑AGTTCAACCAGGCCCTCTTCCA‑GACGCTTGCG‑ATAAATCGGATCGTCA‑GA‑GAGTTTGGAGTTGAACAGCATAGTGACCAGGAAGGACATCACCAGAACCGCCAGCAGGGTGGACGGGTTGCTCACGGAGAGCAGATGGAGGTAGCTGATGCCATGACCtt                                                                                                                                                        >  2:1061070/1‑237 (MQ=255)
                                                                                        gCCAACTACGCCCAGCAGGAACAGCCAGACGGACGTTTTT‑GCACCGGATTTG‑ATTTCAATC‑TGCTTTTCACCGCGC‑AGTTCAACCAGGCCCTCTTCCA‑GACGCTTGCG‑ATAAATCGGATCGTCA‑GA‑GAGTTTGGAGTTGAACAGCATAGTGACCAGGAAGGACATCACCAGAACCGCCAGCAGGGTGGACGGGATGACCACGGGGAGCAGATGGAGGTGGCGGATGCCATGACCTTccc                                                                                                                                                     >  2:214498/1‑238 (MQ=255)
                                                                                           actgtcgccaaggcggAACAGCCAGCCGGAGGTTTTT‑GCCCCGGATTTA‑TTTTAAACC‑TGATTTTCCCCGCGC‑GGTTCAACCAGGCCTTCTTCAG‑GACGCTTGCG‑ATAAATCGGATCGTAA‑GA‑GAGTTTGGAGTTGAACAGAATAGGGACCAGGAAGGACATCACCAGAACCGCCAGCAGGGTGGACGGGATGACCACGGAGAGCAGATGGAGGTAGCTGATGCCATGACCTTCCATCa                                                                                                                                                  <  2:521580/225‑1 (MQ=255)
                                                                                               aagCCCAGCAGGAACAGCCAGACGGGCGTTTTG‑ACACCGGACTTG‑ATTTCAATC‑TGCTTTTCACCGCGC‑AGATCAACCAGGCCCTCTTCCA‑GAAGCCCGCG‑ATAAATCGGCTCGTCA‑GA‑CAGTTTGGGGTTGAACAGCATACGCGCCAGGAACAGCATCACAGCAAACGCCCGCAGGGTGGAAGGAAGGACCACGGGAAGAAGGGGGGGGAACCTGTGTCCATGCCCTTCCCTCACGGa                                                                                                                                              >  1:998726/3‑239 (MQ=255)
                                                                                                 gCCCAGCAGGACCAGCCAGACGGACGTTTTT‑GC‑CCCGATTTGAATTTCAATC‑TGCTTTTCACCGCGC‑AGTCCAACCAGGCCCTCTTCCA‑GACGCTTGCG‑ATAAATCGGATCGTCA‑GA‑GAGTTTGGAGTTGAACAGCATAGTGCCCAGGAAGGACATCACCAGAACCGCCAGCAGGGTGGACGGGATGACCACGGAGAGCAGATGGAGGTAGCTGATGCCATGACCTTCCATCACGGAAg                                                                                                                                            <  2:427418/239‑1 (MQ=255)
                                                                                                 ccccAGCAGAAACAGCCAAGCGGTCTTTTTG‑TCCCGGGTTTTG‑ATTTAAATC‑TGTTTTTCCCCGGTC‑AGTTCAACCAGGCCCTTTTCAA‑GCCGTTTGGG‑ATAAATCGGATCGTCA‑GA‑GAGTTTGGAGTTGAACAGCATAGTGACCAGGAAGGACATCACCAAAACCGCCAGCAGGGTGGACGGGATGACCACGGAGAGCAGATGGAGGTAGCTGATGCCATGACCTTCCATCACGGAAg                                                                                                                                            <  2:1229080/238‑1 (MQ=255)
                                                                                                  cccAGCAGGAACAGCCAGACGGACGTTTTT‑GCACCGGATTTG‑ATTTCAATC‑TGCTTTTCACCGCGC‑AGTTCAACCAGGCCCTCTTCCA‑GACGCTTGCG‑ATAAATCGGATCGTCA‑GA‑GAGTTTGGAGTTGAACAGCATAGTGACCAGGAAGGACATCACCAGAACCGCCAGCAGGGTGGACGGGATGACCACGGAGAGCAGATGGAGGTGGCTGAGGCCATGACCTTCCATCCCGGAAGa                                                                                                                                           >  2:251234/1‑239 (MQ=255)
                                                                                                  cccAGCAGGAACAGCCAGACGGACGTTTTT‑GCACCGGATTTG‑ATTTCAATC‑TGCTTTTCACCGCGC‑AGTTCAACCAGGCCCTCTTCCA‑GACGCTTGCG‑ATAAATCGGATCGTCA‑GA‑GAGTTTGGAGTTGAACAGCATAGTGACCAGGAAGGACATCACCAGAACCGCCAGCAGGGGGGACGGGATGACCACGGAGAGCAGATGGAGGTAGCTGATGCCATGACCTTCCATCACGGAAg                                                                                                                                            >  2:234170/1‑238 (MQ=255)
                                                                                                      gcagGAACAGCCAGACGGACGTTTTT‑GCACCGGATTTG‑ATTTCAATC‑TGCTTTTCACCGCGC‑AGTTCAACCAGGCCCTCTTCCA‑GACGCTTGCG‑ATAAATCGGATCGTCA‑GA‑GAGTTTGGAGTTGAACAGCATAGTGACCAGGAAGGACATCACCAGAACCGCCAGCAGGGTGGACGGGATGACCACGGAGAGCAGATGGAGGTAGCTGATGCCATGACCTTCCATCACGGAAGACATg                                                                                                                                       >  2:911373/1‑239 (MQ=255)
                                                                                                       cagGAACAGCCAGACGGACGTTTTT‑GCACCGGATTTG‑ATTTCAATC‑TGCTTTTCACCGCGC‑AGTTCAACCAGGCCCTCTTCCA‑GACGCTTGCG‑ATAAATCGGATCGTCA‑GC‑GAGTTTGGAGTTGAACAGCATAGTGACCAGGAAGGACATCACCAGAACCGCCAGCAGGGTGGACGGGCTGACCACGGAGAGCAGATGGAGGTAGCTGATGCCATGACCTTCCATCACCGCAGACAttt                                                                                                                                      >  2:213490/1‑237 (MQ=255)
                                                                                                                    acggacgTTTTT‑GCACCGGATTTG‑CTTTCAATC‑TGCTTTTCACCGCGC‑AGTTCAACCAGGCCCTCTTCCA‑GACGCTTGCG‑TTAAATCGGGTCGTCA‑GA‑GAGTTTGGAGTTGACCAGCATAGTGACAAGGAAGGACATCACCAGAACCGCCAGCAGGGTGGCCGGGATGCCGCAGGAGGCCGGTTGGGGGGACCTGCGGCCCAGACCTTCCCTACCGGAAGACATGGAAACACATGCCGc                                                                                                                         >  1:789318/1‑239 (MQ=255)
                                                                                                                     cggcagTTTTT‑GCCCGGTATTGC‑ATTTAAATC‑TGCTTTTCACCGCGC‑AGTTAAACCAGGCCCTCTCCCA‑GCCGCTGGCG‑AAAAATCGGATCGTCA‑GA‑AGGTTTGGAGTTGAACGGCATGGTGACCAGGAAGGACATCACCAGAACCGCCAGCAGGGTGGACGGGATGACCACGGAGAGCAGATGGAGGTAGCTGATGCCATGACCTTCCATCACGGAAGACATGTAAACCACTGCCg                                                                                                                          <  2:1163319/232‑1 (MQ=255)
                                                                                                                        acgTTTTT‑GCACCGGATTTG‑ATTTCAATC‑TGCTTTTCACCGCGC‑AGTTCAACCAGGCCCTCTTCCA‑GACGCTTGCG‑ATAAATCGGATCGTCA‑GA‑GAGTTTGGAGTTGAACAGCATAGTGACCAGAAAGGACATCACCAGAACCGCCAGCAGGGTGGACGGGATGACAACGGAGAACAAAGGGAGGGCGCTGGTGCCAGGACCTTCCATACCGGAAAACAGGTAAAACAATGCCGcgaga                                                                                                                     >  1:1233763/1‑235 (MQ=255)
                                                                                                                           ttttttcccgcgcttttg‑ttttCATTC‑TTTTTTGCCCCGCCT‑AGTTAAATCAGGCCTTTTCCGA‑GACGCTGCGG‑ATAAAGCGGAGCGTGA‑GA‑GAGTTTGGAGTTCAAGAGCATAGGGACAAGGAAGACAATCCCCAGAACCGCCAGCAGGGTGGACGGGATGACCACGGAGAGCAGATGGAGGTAGCTGATGCCATGACCTTCCATCACGGAAGACATGTAAACCACTGCCGCTGAGAt                                                                                                                   <  1:547324/225‑1 (MQ=255)
                                                                                                                            ttttgcccccGGATTTT‑ATTCCAATC‑TGCTTTTCCCCGCGA‑AGTTCACCCAGGCCCTTTCCCA‑GACTCTTGCG‑ATAATTCGGATCGTCA‑GA‑GAGTTTGGAGTTGAACAGCATAGTGACCAGGAAGGACATCCCCAGAACCGCCAGCAGGGTGGACGGGATGACCACGGAGAGCAGATGGAGGTAGCTGATGCCATGACCTTCCATCACGGAAGACATGTAAACCACTGCCGCTGAGAt                                                                                                                   <  2:1125860/230‑1 (MQ=255)
                                                                                                                                      ggttttg‑atgtAAATC‑TGCTTTCCCCCGGGC‑AGTGCAACCAGGCCCT‑TTCCAGGACGCTTGGA‑ATAAAGCGGATCGTAA‑GA‑GATGTGGGAGTTGAACAGCATAGGGACAAGGAAGGACAGCACCAGAACCGCCAGCAGGGTGGACGGGATGACCACGGAGAGCAGATGGAGGTAGCTGATGCCATGACCTTCCATCACGGAAGACATGTAAACCACTGCCGCTGAGATTGGCGATGCgg                                                                                                        <  2:858298/236‑1 (MQ=255)
                                                                                                                                                  cAATC‑TGCTTTTCACCGCGC‑AGTTCAACCAGGCCCTCTTCCA‑GACGCTTGCG‑ATAAATCGGATCGTCA‑GA‑GAGTTTGGAGTTGAACAGCATAGTGACCAGGAAGGACATCACCAGAACCGCCAGCAGGGTGGACGGGATGACCACGGAGAGCAGATGGAGGTAGCTGATGCCATGACCTTCCATCACGGAAGACATGt                                                                                                                                      >  2:207778/1‑198 (MQ=255)
                                                                                                                                                     tc‑ttctTTTC‑CCGCGCAAATTAAACCAGGCCCTTTGCCA‑GAGCCTGGCG‑AAAAATGGGTGCGT‑A‑GAGGAGTTTGGAGTTAAACAGCATAGGACCCAGGAAGGACATCACCAGAACCGCCAGCAGGGTGGACGGGATGACCACGGAGAGCAGATGGAGGTAGCTGATGCCATGACCTTCCATCACGGAAGACATGTAAACCACTGCCGCTGAGATTGGCGATGCGGTGATCGCAATCTgc                                                                                          <  2:1258467/239‑1 (MQ=255)
                                                                                                                                                         gCTTTTCACCGCGC‑AGTTCAACCAGGCCCTCTTCCA‑GACGCTTGCG‑ATAAATCGGATCGTCA‑GA‑GAGTTTGGAGTTGAACAGCATAGTGACCAGGAAGGACATCACCAGAACCGCCAGCAGGGTGGACGGGATGACCACGGAGAGCAGATGGAGGTAGCTGATGCCATGACCTTCCATCACGGAAGACATGTAAACCACTGCCGCTGAGATTGGCGATGCGGTGATCGCAATCTGcgcg                                                                                       >  2:240167/1‑239 (MQ=255)
                                                                                                                                                              ccgccGCTC‑GGTTCAACTGGGCCCTCTTCCA‑GAGGCTTGCA‑ATAAATGGGATCGTCA‑GA‑GAGTTGGGAGTTGAACAGGAGGGGGACAGGGAAGGACATCACCAGAGCCGCCAGCAGGGTGGACGGGATGACCACGGAGAGCAGATGGAGGTAGCTGATGCCATGACCTTCCATCACGGAAGACATGTAAACCACTGCCGCTGAGATTGGCGATGCGGTGATCGCAATCTGCGCGGATAc                                                                                  <  2:789318/236‑1 (MQ=255)
                                                                                                                                                                tataagaggcagcAACCAGGCCCTCTTCCA‑GGCGCTTGCG‑ATAAATCGGAACGTAA‑GA‑GAGTTTGGAGTTAAACAGCATAGTGACCAGGAAGGACATCACCAGAACCGCCAGCAGGGTGGACGGGATGACCACGGAGAGCAGATGGAGGTAGCTGATGCCATGACCTTCCATCACGGAAGACATGTAAACCACTGCCGCTGAGATTGGCGATGCGGTGATCGCAATCTGCGCGGATAc                                                                                  <  2:698552/226‑1 (MQ=255)
                                                                                                                                                                    cgc‑AGTTCAACCAGGCCCTCTTCCA‑GACGCTTGCG‑ATAAATCGGATCGTCA‑GA‑GAGTTTGGAGTTGAACAGCATAGTGACCAGGAAGGACATCACCAGAACCGCCAGCAGGGTGGACGGGATGACCACGGAGAGCAGATGGAGGTAGCTGATGCCATGACCTTCCATCACGGAAGACATGTAAACCACTGCCGCTGAGATTGGGGATTCGGGGATCGCaactgtggcggtcaccccggc                                                                            >  2:174696/1‑220 (MQ=255)
                                                                                                                                                                    cgc‑AGTTCAACCAGGCCCTCTTCCA‑GACGCTTGCG‑ATAAATCGGATCGTCA‑GA‑GAGTTTGGAGTTGAACAGCATAGTGACCAGGAAGGACATCACCAGAACCGCCAGCAGGGTGGACGGGATGACCACGGAGAGCAGATGGAGGTAGCTGATGCCATGACCTTCCATCACGGAAGACATGTAAACCACTGCCGCTGAGATTGGCGATGCGGTGATCGCAATCTGCGCGGATACCACTGc                                                                            >  2:659892/1‑239 (MQ=255)
                                                                                                                                                                    cgc‑AGTTCAACCAGGCCCTCTTCCA‑GACGCTTGCG‑ATAAATCGGATCGTCA‑GA‑GAGTTTGGAGTTGAACAGCATAGTGACCAGGAAGGACATCACCAGAACCGCCAGCAGGGTGGACGGGATGACCACGGAGAGCAGATGGAGGTAGCTGATGCCATGACCTTCCATCACGGAAGACATGTAAACCACTGCCGCTGAGATTGGCGATGCGGGGATCGCAATCTGCGCGGATACCACTGc                                                                            >  2:47583/1‑239 (MQ=255)
                                                                                                                                                                    cgc‑AGTTCAACCAGGCCCTCTTCCA‑GACGCTTGCG‑ATAAATCGGATCGTCA‑GA‑GAGTTTGGAGTTGAACAGCATAGTGACCAGGAAGGACATCACCAGAACCGCCAGCAGGGTGGACGGGATGACCACGGAGAGCAGATGGAGGTAGCTGATGCCATGACCTTCCACCACGGAAGCAATGTAAACCACGGCCGCTGGGATTGGCGAGGCGGGGAACCAAAATAGCGCGGATACCAccca                                                                            >  1:407033/1‑236 (MQ=255)
                                                                                                                                                                    cgc‑AGTTCAACCAGGCCCTCTTCCA‑GACGCTTGCG‑ATAAATCGGATCGTCA‑GA‑GAGTTTGGAGTTGAACAGCATAGTGACCAGGAAGGACATCACCAGAACCGCCAGCAGGGTGGACGGGATGACCACAGAGAGCAGATGGAGGTAGCTGATGCCATGACCTTCCATCACGGAAGACATGTAAACCACTGCCGCTCAGATTGGCGATGCGGGGATCGCAATCTGCGCGGAAACAACTGc                                                                            >  1:1037433/1‑239 (MQ=255)
                                                                                                                                                                    cgc‑AGTTCAACCAGGCCCTCTTCCA‑GACGCTTGCG‑ATAAATCGGATCGTCA‑GA‑GAGTTTGGAGTTGAACAGCATAGTGACCAGGAAGGACATCACCAGAACCGCCAGCAGGGGGGACGGGATGACCCCGGGGAGCAGATGGAGGTAGCGGATGCCATTACCTTCCATCCCGGAAGACATGTAAACCACTGCCCCTGAGATTGGCGAGGCGGTGATGGCAATccggccggaaacacacgc                                                                            >  1:999970/1‑222 (MQ=255)
                                                                                                                                                                      gaaGTTCAACCAGGCCCTCTTCCA‑GGCGGTTGCA‑AAAAATCGGATCGTCA‑GA‑GAGTTTGGAGTTGAAAGGCATAGTGACCAGGAAGGACATCCCCAGAACCGCCAGCAGGGTGGACGGGATGACCACGGAGAGCAGATGGAGGTAGCTGATGCCATGACCTTCCATCACGGAAGACATGTAAACCACTGCCGCTGAGATTGGCGATGCGGTGATCGCAATCTGCGCGGATACCACTGCa                                                                           <  2:167328/237‑1 (MQ=255)
                                                                                                                                                                             gaCCAGCCCCCCTTCCG‑GACGTGTGAG‑ATAAAGCGGACCGTAG‑TG‑GATTTGGGAGTTGACCAGATGAGGGACCAGGACGGACATCACCAGAACCGCCAGCAGGGTTGACGGGATGACCACGGAGAGCAGATGGAGGTAGCTGATGCCATGAACTTCCATCACGGAAGACATGTAAACCACTGCCGCTGAGATTGGCGATGCGGTGATCGCAATCTGCGCGGATACCACTGCAGTAGACa                                                                    <  2:467341/238‑1 (MQ=255)
                                                                                                                                                                                    cccTCTTCCA‑GACGCTTGCG‑ATAAATCGGATCGTCA‑GA‑GAGTTTGGAGTTGAACAGCATAGTGACCAGGAAGGACATCACCAGAACCGCCAGCAGGGTGGACGGGATGa                                                                                                                                                                                               >  2:141060/1‑109 (MQ=255)
                                                                                                                                                                                    cccTCTTCCA‑GACGCTTGCG‑ATAAATCGGATCGTCA‑GA‑GAGTTTGGAGTTGAACAGCATAGTGACCAGGAAGGACATCACCAGAACCGCCAGCAGGGTGGACGGGATGACCACGGAGAGCAGATGTAGGTAGCTAATGCCATGACCTTCCATCACGGAAGACATGTAAACCACTGCCGCTGACATTGGCGATGCGGTGATCGCAATCTGCGCGGATACCACTGCAGAAGACacatgacg                                                             >  2:965712/1‑232 (MQ=255)
                                                                                                                                                                                    cccTCTTCCA‑GACGCTTGCG‑ATAAATCGGATCGTCA‑GA‑GAGTTTGGAGTTGAACAGCATAGTGACCAGGAAGGACATCACCAGAACCGCCAGCAGGGTGGACGGGATGACCACGGAGAGCAGATGGAGGTAGCTGATGCCATGACCTTCCATCACGGAAGACATGTaaa                                                                                                                                   >  2:1155031/1‑169 (MQ=255)
                                                                                                                                                                                    cccTCTTCCA‑GACGCTTGCG‑ATAAATCGGATCGTCA‑GA‑GAGTTTGGAGTTGAACAGCATAGTGACCAGGAAGGACATCACCAGAACCGCCAGCAGGGTGGACGGGATGACCACGGAGAGCAGATGGAGGTAGCTGATGCCATGACCTTCCATCACGGAAGACATGTAAACCACTGCCGCTGAGATTGGCGATGCGGTGATCGCAATCTGCGCGGTTACCCCTGCAGTAAACAGCGGAc                                                              >  2:469496/1‑238 (MQ=255)
                                                                                                                                                                                    cccTCTTCCA‑GACGCTTGCG‑ATAAATCGGATCGTCA‑GA‑GAGTTTGGAGTTGAACAGCATAGTGACCAGGAAGGACATCACCAGAACCGCCAGCAGGGTGGACGGGATGACCACGGAGAGCAGATGGAGGTAGCTGATGCCATGACCTTCCATCACGGAAGACATGTAAACCACGGCCGCCGAGATTGGCGATGCGTTGATCGCAATCTGCGGGGAAACAACTCCAATAACCAGGGGagg                                                             >  1:1028836/1‑237 (MQ=255)
                                                                                                                                                                                    cccTCTTCCA‑GACGCTTGCG‑ATAAATCGGATCGTCA‑GA‑GAGTTTGGAGTTGAACAGCATAGTGACCAGGAAGGACATCACAAGAACCGCCAGCAGGGTGGa                                                                                                                                                                                                       <  2:1031084/101‑1 (MQ=255)
                                                                                                                                                                                    cccTCTTCCA‑GACGCTTGCG‑ATAAATCGGATCGTCA‑GA‑GAGTTTGGAGTTGAACAGCATAATGACCAGGAAGGACATCACCAGAACCGCCAGCAGGGTGGACGGGATGACCACGGAGAGCAGATGGAGGTAGATGATGCCATGACCTTCCATCACGGAAGACATGTAAATCACTGCCTCTGAGATTGGCGCTGCGGGGATCGCAATCTGCGCGGATACACCTGCAGTAgtgaactgccg                                                             >  2:864949/1‑229 (MQ=255)
                                                                                                                                                                                    cccTCTTCCA‑GACGCTTGCG‑ATAAATCGGATCGGCA‑GA‑GAGTTTGGAGTTGAACAGCATAGTGACCAGGAAGGACATCACCAGAACCGCCAGCAGGGTGGa                                                                                                                                                                                                       >  1:1031084/1‑101 (MQ=255)
                                                                                                                                                                                       tctTCCA‑GACGCTTGCG‑ATAAATCGGATCGTCA‑GA‑GAGTTTGGAGTTGAACAGCATAGTGACCAGGAAGGACATCACCAGAACCGCCAGCAGGGTGGACGGGATGACCACGGAGAGCAGATGGAGGTAGCTGATGCCATGACCTTCCCTCACGGAAGACATGTAAACCACTGCCGCTGAGATTGCCGAGGGGGGTAACGCAATCCCCGAGGCTACCCCTCCAATAgccggctcttatac                                                          >  1:698552/1‑226 (MQ=255)
                                                                                                                                                                                                 cgcccttgagaaaaaCGGAACGTAAGGA‑GGGTTTGGAGTTGAACAGCATAGTGACCAGGAAGGACATCACCAGAACCGCCAGCAGGGTGGACGGGATGACCACGGAGAGCAGATGGAGGTAGCTGATGCCATGACCTTCCATCACGGAAGACATGTAAACCACTGCCGCTGAGATTGGCGATGCGGTGATCGCAATCTGCGCGGATACCACTGCAGTAGACAGCGGACGGCA‑AGGTTTa                                                  <  2:814346/228‑1 (MQ=255)
                                                                                                                                                                                                 cGCTGGCG‑AAAAACCGGTCCGTCA‑GA‑GAGTTGGGAGTGAAAAGGCATGGTGCCCAGAAAGGCAACCACAAGACCCGCCAGCAGGGTGGACGGGATGACCACGGAGAGCAGATGGAGGTAGCTGATGCCATGACCTTCCATCACGGAAGACATGTAAACCACTGCCGCTGAGATTGGCGATGCGGTGATCGCAATCTGCGCGGATACCACTGCAGTAGACAGCGGACGGCA‑AGGTTTaa                                                 <  2:1032841/238‑1 (MQ=255)
                                                                                                                                                                                                  gCTTGCG‑ATAAATCGGATCGTCA‑GA‑GAGTTTGGAGTTGAACAGCATAGTGACCAGGAAGGACATCACCAGAACCGCCAGCAGGGTGGACGGGATGACCACGGAGAGCAGATGGAGGTAGCTGATGCCATGACCTTCCATCACGGAAGACATGTAAACCACTGCCGCTGAGATTGGCGAGGCGGTGATCGCAATCTGCGCGGATACCACTGCAGTAGACAGCGGACGGCA‑AGGTTTAAc                                                >  2:647046/1‑238 (MQ=255)
                                                                                                                                                                                                  cctttggaaaaactgggATCGGCA‑GA‑GGTTTGGGAGTTGAACAGCGTGGTGCCCAGGAAGGAAATCCCCAGAACCGCCAGCAGGGTGGACGGGATGACCACGGAGAGCAGATGGAGGTAGCTGATGCCATGACCTTCCATCACGGAAGACATGTAAACCACTGCCGCTGAGATTGGCGATGCGGTGATCGCAATCTGCGCGGATACCACTGCAGTAGACAGCGGACGGCA‑AGGTTTaa                                                 <  2:1034939/223‑1 (MQ=255)
                                                                                                                                                                                                    ttGCG‑ATAAATCGGATCGTCA‑GA‑GAGTTTGGAGTTGAACAGCATAGTGACCAGGAAGGACATCACCAGAACCGCCAGCGGGGTGGACGGGATGACCACGGAGAGCAGATGGAGGAAGCTGATGCCATGACCTTCCATCACGGAAGACATGTAATCCCCTGCCGCTGAGATTGGCGATGCGGTGAACGCAATCTGCGCGGAAACCACTCAAGTAGAAAGGGGCGGGCA‑Agcgataaagcc                                             >  1:961643/1‑229 (MQ=255)
                                                                                                                                                                                                                  gATCGTCA‑GA‑GAGTTTGGAGTTGAACAGCATAGTGACCAGGAAGGACATCACCAGAACCGCCAGCAGGGTGGACGGGATGACCACGGAGAGCAGATGGAGGTAGCTGATGCCATGACCTTCCATCACGGAAGACATGTAAACCACTGCCGCTGAGATTGGCGATGCGGTGATCGCAATCTGCGCGGATACCACTGCAGTAGACAGCGGACGGCA‑AGGGTTAACGCCTTGTTCCTTCGCa                                >  2:824494/1‑239 (MQ=255)
                                                                                                                                                                                                                   aTCGTCA‑GA‑GAGTTTGGAGTTGAACAGCATAGTGACCAGGAAGGACATCACCAGAACCGCCAGCAGGGTGGACGGGATAACCACGGAGAGCAGTTGGAGGCAGCTGAGGCCATGACCTTCCATCACGGAAGACATGTAAACCGCTGCCGCCGGGATTAGCATTCCGGGGATGGCAATTTGCGGGGAACCCCATGCAGTAACCAGCGGCCGGCAGAGGTTAAAcccggtttacttccaaa                                >  1:699613/1‑223 (MQ=255)
                                                                                                                                                                                                                     gtgcA‑GA‑GTGTTTGGGGTTGACCAGTAGAGTGAACAGGAAGGACATGCCAAGAACCGCCAGCAGGGTGGACGGGATGACCACGGAGAGCAGATGGAGGTAGCTGATGCCCTGACCTTCCATCACGGAAGACATGTAAACCACTGCCGCTGAGATTGGCGATGCGGTGATCGCAATCTGCGCGGATACCACTGCAGTAGACAGCGGACGGCA‑AGGTTTAACGCCTTGTTCCTTCGCAAc                              <  2:1095868/235‑1 (MQ=255)
                                                                                                                                                                                                                       tCA‑GA‑GAGTTTGGAGTTGAACAGCATAGTGACCAGGAAGGACATCACCAGAACCGCCAGCAGGGTGGACGGGATGACCACGGAGAGCAGATGGAGGTAGCTGATGCCATGACCTTCCATCACGGAAGACATGTAAACCACTGCCGCTGAGATTGGCGATGCGGTGATCGCAATCTGCGCGGATACCACTGCAGTAGACAGCGGACGGCA‑AGGTTTAACCCCTTGTTCCTTCGAAACtt                            >  2:91603/1‑238 (MQ=255)
                                                                                                                                                                                                                       tCA‑GA‑GAGTTTGGAGTTGAACAGCATAGTGACCAGGAAGGACATCACCAGAACCGCCAGCAGGGGGGACGGGATGACCACGGAGAGCAGATGGAGGTAGCTGATGCCATGACCTTCCATCACGGAAGACATGTAAACCACTGCCGCTGAGATTGGCGATGCGGTGATCGCAATCTGCGCGGATACCCCTGCAGTAGACAGGGGACGGCA‑AGGTTTACGGCCTTGTTCGTTCGCAACTTc                           >  2:888586/1‑239 (MQ=255)
                                                                                                                                                                                                                           ga‑gagTTTGGAGTTGAACAGCATAGTGACCAGGAAGGACATCACCAGAACCGCCAGCAGGGTGGACGGGATGACCACGGAGAGCAGATGGAGGTAGCTGATGCCATGACCTTCCATCACGGAAGACATGTAAACCACTGCCGCTGCGATTGGCGATGCGGGGTTCGCAATCTGCCCGGATACCACTCCAGCAGACCGCGGACGGCA‑AGGTTTAACCCCTTTTTCCTTCCCACATTCAgg                        >  1:1235349/1‑238 (MQ=255)
                                                                                                                                                                                                                              gagTTTGGGGTTGAACAGAATGGGGACCAGAAAGGAATCCCCCAAAACCGCCAGCAGGGTGGACGGGATGACCACGGAGAGCAGATGGAGGTAGCTGATGCCATGACCTTCCATCACGGAAGACATGTAAACCACTGCCGCTGAGATTGGCGATGCGGTGATCGCAATCTGCGCGGATACCACTGCAGTAGACAGCGGACGGCA‑AGGTTTAACGCCTTGTTCCTTCGCAACTTCAGCg                       <  2:487397/238‑1 (MQ=255)
                                                                                                                                                                                                                                            acggCATAGGGACCAGGAAGGACCACACCGAAACCGCCAGCAGGGTGGACGGGATGACCACGGAGAGCAGATGGAGGTAGCTGATGCCATGACCTTCCATCACGGAAGACATGTAAACCACTGCCGCTGAGATTGGCGATGCGGTGATCACAATCTGCGCGGATACCACTGCAGTAGACAGCGGACGGCA‑AGGTTTAACGCCTTGTTCCTTCGCAACTTCAGCGATAACTGGCAgtgt         <  2:407033/235‑1 (MQ=255)
                                                                                                                                                                                                                                                cATAGTGACCAGGAAGGACATCACCAGAACCGCCAGCAGGGTGGACGGGATGACCACGGAGAGCAGATGGAGGTAGCTGATGCCATGACCTTCCATCACGGAAGACATGTAAACCACTGCCGCTGAGATTGGCGATGCGGTGATCGCAATCTGCGCGGATACCACTGCAGTAGACAGCGGACGGCA‑AGGTTTAACGCCTTGTTCCTTCGCAACTTCAGCGATAACTGGCAGTGTCGCCa    >  2:264559/1‑239 (MQ=255)
                                                                                                                                                                                                                                                  tAGTGACCAGGAAGGACATCACCAGAACCGCCAGCAGGGTGGACGGGATGACCACGGAGAGCAGATGGAGGTAGCTGATGCCATGACCTTCCATCACGGAAGACATGTAAACCACTGCCGCTGAGATTGGCGATGCGGTGATCGCAATCTGCGCGGATACCACTGCAGTAGACAGCGGACGGCA‑AGGTTTAACGCCTTGTTCCTTCGCAACTTCAGCGATAACTGGCAGTGTCGcccac  >  2:350447/1‑236 (MQ=255)
                                                                                                                                                                                                                                                     |                                                                                                                                                                                                                                            
GATGATCAGGATTGCGTTGGTGGTGTTCATCAGCGGTTTTTCAACCAGACCCA‑TGCTTGGGCTGTTGATGATTGCATAGATAACCACGCCAACTACGCCCAGCAGGAACAGCCAGACGGACGTTTTT‑GCACCGGATTTG‑ATTTCAATC‑TGCTTTTCACCGCGC‑AGTTCAACCAGGCCCTCTTCCA‑GACGCTTGCG‑ATAAATCGGATCGTCA‑GA‑GAGTTTGGAGTTGAACAGCATAGTGACCAGGAAGGACATCACCAGAACCGCCAGCAGGGTGGACGGGATGACCACGGAGAGCAGATGGAGGTAGCTGATGCCATGACCTTCCATCACGGAAGACATGTAAACCACTGCCGCTGAGATTGGCGATGCGGTGATCGCAATCTGCGCGGATACCACTGCAGTAGACAGCGGACGGCA‑AGGTTTAACGCCTTGTTCCTTCGCAACTTCAGCGATAACTGGCAGTGTCGCCAGA  >  NC_000913/4365980‑4366451

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 24 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑

GATK/CNVnator alignment

N/A