Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A10 F3 I0 R1 54 170.2 2993358 97.8% 2927504 270.3

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation freq annotation gene description
RA NC_000913 1,466,585 T→C 10.7% pseudogene (1194/2513 nt) ydbA → pseudogene, autotransporter homolog, interrupted by IS2 and IS30

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0009131,466,5850TC10.7% 249.7 / 4.3 104pseudogene (1194/2513 nt)ydbApseudogene, autotransporter homolog, interrupted by IS2 and IS30
Reads supporting (aligned to +/- strand):  ref base T (47/41);  new base C (8/5);  total (55/49)
Fisher's exact test for biased strand distribution p-value = 7.67e-01
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00

Only 100 of 104 total aligned reads displayed.

AGCACCATCACCAACGGTGGCACCGGCACCCAGATTAATGGTGATGACGCCACGGCAAACAACAACGGCAAAACCACCGTTGACGGCAAGGATTCCACCGGTACGGAAATCAACGGTAATAACGGAAAAGTTATTCAGGACGGCGATCTGGATG‑TCAGCGGCGGCGGTCACGGTATTGATATCACCGGCGACAGCGCAACGGTGGATAACAAGGGCACCATGACCGTCACCGATCCGGAGTCCATCGGTATCCAGGTTGACGGCGACCAGGCGGTTGTTAACAACGAAGGCGAGAGCGCCATCACCAACGGTGGCACCGGCACGCAGATTAACGGTGATGACGCCACGGCAAACAACAACGGCAAAACCACCGTTGACGGCAAGGATTCCACCGGTACGGAAATTGCTGGCAATAACGGGAAGGTGATTCAGGACGGCGATCTGGATGTCAGCGGCGGCGGTCACGGTATTGATATCACCGGCGACAGCGCAACGGTGGATAACAAGGGCACCATGACCGTCACCGATCCGGAGTCCATCGGTATCCAGATTGACGGCGAC  >  NC_000913/1466307‑1466867
                                                                                                                                                                                                                                                                                       |                                                                                                                                                                                                                                                                                          
agCACCATCACCAACGGTGGCACCGGCACCCAGATTAATGGTGATGACGCCACGGCAAACAACAACGGCAAAACCACCGTTGACGGCAAGGATTCCACCGGTACGGAAATCAACGGTAATAACGGAAAAGTTATTCAGGACGGCGATCTGGATG‑TCAGCGGCGGCGGTCACGGTATTGATATCACCGGCGACAGCGCAACGGTGGATAACAAGGGCACCATGACCGTCACCGATCCGGAGTCCATCGGTATCCAGGTTGACGGCGACCAGGCGGTTGTTAACAACg                                                                                                                                                                                                                                                                                     >  1:1384593/1‑286 (MQ=255)
agCACCATCACCAACGGTGGCACCGGCACCCAGATTAATGGTGATGACGCCACGGCAAACAACAACGGCAAAACCACCGTTGACGGCAAGGATTCCACCGGTACGGAAATCAACGGTAATAACGGAAAAGTTATTCAGGACGGCGATCTGGATG‑TCAGCGGCGGCGGTCACGGTATTGATATCACCGGCGACAGCGCAACGGTGGATAACAAGGGCACCATGACCGTCACCGATCCGGAGTCCATCGGTATCCAGGTTGACGGCGACCAGGCGGTTGTTAACAACg                                                                                                                                                                                                                                                                                     <  2:1384593/286‑1 (MQ=255)
     cATCACCAACGGTGGCACCGGCACCCAGATTAATGGTGATGACGCCACGGCAAACAACAACGGCAAAACCACCGTTGACGGCAAGGATTCCACCGGTACGGAAATCAACGGTAATAACGGAAAAGTTATTCAGGACGGCGATCTGGATG‑TCAGCGGCGGCGGTCACGGTATTGATATCACCGGCGACAGCGCAACGGTGGATAACAAGGGCACCATCACCGTCACCGCTCCGGAGTCCATCGGTATCCAGGTTGACGGCGACCAGGCGGTTGTTAACAACGAAGGCgag                                                                                                                                                                                                                                                                             >  1:604631/1‑289 (MQ=255)
         aCCAACGGTGGCACCGGCACCCAAATTAGTGGTGATGACGCCACGGCAAACAACAACGGCAAAACCACCGTTGACGGCAAGGATTCCACCGGTACGGAAATCAACGGTAATAACGGAAAAGTTATTCAGGACGGCGATCTGGATG‑TCAGCGGCGGCGGTCACGGTATTGATATCACCGGCGACAGCGCAACGGTGGATAACAAGGGCACCATGACCGTCACCGATCCGGAGTCCATCGGTATCCAGGTTGACGGCGACCAGGCGGTTGTTAACAACGAAGGCGAGAgcg                                                                                                                                                                                                                                                                         <  1:824423/289‑1 (MQ=255)
         aCCAACAGTGGCACCGGCACCCAGATTAAGGGGAATGACGCCACGGCAAACAACAACGGAAAAACCACCGTTGACGGCAAGGATTCCACCGGTACGGAAATCAACGGTAATAACGGAAAAGTTATTCAGGACGGGGATCTGGATG‑TCAGCGGCGGCGGTCACGGTATGGCAACCACAGGCGACAACGAAACGGTGGATAACAAGGGCACCATGACCGTCACCGATCCGGAGTCCATCGGTATCCAGGTTGACGGCGACCAGGCGGTTGTTAACAACGAAGGCGAGAgcg                                                                                                                                                                                                                                                                         <  2:1006287/289‑1 (MQ=17)
           cAACGGTGGCACCGGCACCCAGATTAATGGTGATGACGCCACGGCAAACAACAACGGCAAAACCACCGTTGACGGCAAGGATTCCACCGGTACGGAAATCAACGGTAATAACGGAAAAGTTATTCAGGACGGCGATCTGGATG‑TCAGCGGCGGCGGTCACGGTATTGATATCACCGGCGACAGCGCAACGGTGGATAACAAGGGCACCATGACCGTCACCGATCCGGAGTCCATCGGTATCCAGGTTGACGGCGACCAGGCGGTTGTTAACAACGAAGGCGAGAGCGcc                                                                                                                                                                                                                                                                       <  1:139753/289‑1 (MQ=255)
             agggcgacagcggtgccgataTTAAGGGTGATGACGCCACAGGAAACAACAATGGCAAAACCACCGTTGACGGCAAAGATTCCACCGGTACGGAAATCAACGGTAATAACGGAAAAGTTAGTCAGGACGGCGATCTGGATG‑TCAGCGGCGGCGGTCACGGTATTGATATCACCGGCGACAGCGCAACGGTGGATAACAAGGGCACCATGACCGTCACCGATCCGGAGTCCATCGGTATCCAGGTTGACGGCGACCAGGCGGTTGTTAACAACGAAGGCGAGAGCGcc                                                                                                                                                                                                                                                                       <  1:325961/267‑1 (MQ=14)
                 tGGCACCGGCACCCAGATTAATGGTGATGACGCCACGGCAAACAACAACGGCAAAACCACCGTTGACGGCAAGGATTCCACCGGTACGGAAATCAACGGTAATAACGGAAAAGTTATTCAGGACGGCGATCTGGATG‑TCAGCGGCGGCGGTCACGGTATTGATATCACCGGCGACAGCGCAACGGTGGATAACAAGGGCACCATGACCGTCACCGATCCGGAGTCCATCGGTATCCAGGTTGACGGCGACCAGGCGGTTGTTAACAACGAAGGCGAGAGCACTATCAcc                                                                                                                                                                                                                                                                 >  2:1312065/1‑289 (MQ=255)
                     accggcaccCAGATTAATGGTGATGACGCCACGGCAAACAACAACGGCAAAACCACCGTTGACGGCAAGGATTCCACCGGTACGGAAATCAACGGTAATAACGGAAAAGTTATTCAGGACGGCGATCTGGATG‑TCAGCGGCGGCGGTCACGGTATTGATATCACCGGCGACAGCGCAACGGTGGATAACAAGGGCACCATGACCGTCACCGATCCGGAGTCCATCGGTATCCAGGTTGACGGCGACCAGGCGGTTGTTAACAACGAAGGCGAGAGCGCCATCACCAACg                                                                                                                                                                                                                                                             <  1:1081174/289‑1 (MQ=255)
                           accCAGATTAATGGTGATGACGCAACGGCAAACAACAACGGCAAAACCACCGTTGACGGCAAGGATTCCACCGGAACGGAAATCAACGGTAATAACGGGAAAGTTATTCAGGACGGCGATCTGGATG‑TCAGCGGCGGCGGGCACGGTATTGATATCACCGGCGACAGCGCAACGGTGGATAACAAGGGCACAATGACAGTCACCGATGCGGAGTCCATCGGTATCCAGGTTGACGGAGACCCGGCGGTGGTTAAAAAAGAAGGCGAGAGCACAATCACCAAAGGCGGCa                                                                                                                                                                                                                                                       >  2:1230307/1‑289 (MQ=14)
                            tcagtaTTAAGGGTGATAATGCCACCGTAAACAACAATGGCAAAACCACCGTGGACGGGAAGGATTCCACCGGTACGGAAATCAACGGTAATAACGGCAAAGTTATTCAGGGCGGCGATCTGGATG‑TCAGCGGCGGCGGTCACGGTATTGATATCACCGGCGAACGCGCAACGGTGGATAACAAGGGCACCATGACCGTCACCGATCCGGAGTCAATCGGTATCCAGGTTGACGGCGACCAGGCGGTTGTTAACAACGAAGGCGAGAGCGCCATCACCAACGGTGGCAc                                                                                                                                                                                                                                                      <  2:1072220/284‑1 (MQ=14)
                                  ttAATGGTGATGACGCCACGGCAAACAACAACGGCAAAACCACCGTTGACGGCAAGGATTCCACCGGTACGGAAATCAACGGTAATAACGGAAAAGTTATTCAGGACGGCGATCTGGATG‑TCAGCGGCGGCGGTCACGGTATTGATATCACCGGCGACAGCGCAACGGTGGATAACAAGGGCACCATGACCGTCACCGATCCGGAGTCCATCGGTATCCAGGTTGACGGCGACCAGGCGGTTGTTAACAACGAAGGCGAGAGCGCCATCACCAACGGTGGCACCGGCa                                                                                                                                                                                                                                                 <  1:399573/288‑1 (MQ=255)
                                   tAATGGTGATGAAGCCACGGCAAACAACAACGGCAAAACCACCGTTGACGGCAAGGATTCCACCGGTACGGAAATCAACGGTAATAACGGAAAAGTTATTCAGGACGGCGATCTGGATG‑TCAGCGGCGGCGGTCACGGTATTGATATCACCGGCGACAGCGCAACGGTGGATAACAAGGGCACCATGACCGTCACCGATCCGGAGTCCATCGGTATCCAGGTTGACGGCGACCAGGCGGTTGTTAACAACGAAGGCGAGAGCGCCATCACCAACGGTGGCACCGGCACg                                                                                                                                                                                                                                               <  1:1017359/289‑1 (MQ=255)
                                   aaaTGGTGAGTACGCAACGGCAAACAACAACGGCAAAACCACCGTTGACGGCAAGGATTCCACCGGTACGGAAATCAACGGTAATAACGGAAAAGTTATTCAGGACGGCGATCTGAATG‑TCAGCGGCGGCGGTCACGGTATTGATAGCACCGGCGACAGCGCAACGGTGGATAACAAGGGCACCATGACCGTCACCGATCCGGAGTCCATCGGTATCCAGGTTGACGGCGACCAGGCGGTTGTTAACAACGAAGGCGAGAGCGCCATCACCAACGGTGGCACCGGCACg                                                                                                                                                                                                                                               <  1:194698/288‑1 (MQ=255)
                                          gatggcaccaacgCAAACAACAACGGCAAAACAACCGTTGTCGGCAAGGATACCAACGGTACGAAAATAAACGGTAAGAGCGTAAAAGTTTGTCAGTTCGGCGTTCTGGATG‑GCAGCAGCGGCCGTCACGGTATTTATATCACCGGGGACAGCGGCACCGTGGATAACAAGGGCACGATGACCGTCCAAGATCCGAAGTCCATCGGTATCCAGGTTGACGGCGACAAGGCCGTTGTTAACAACGAAGGCGAGAGCGCCATCACCAACGGTGGCACCGGCACGCAGAtt                                                                                                                                                                                                                                         <  2:849854/276‑1 (MQ=255)
                                           atgaCGCCACGGCAAACAACAACGGCAAAACCACCGTTGACGGCAAGGATTCCACCGGTACGGAAATCAACGGTAATAACGGAAACGTTATTCAGGACGGCGATCTGCATG‑TCAGCGGCGGCGGTCACGGTATTGATATCACCGGCGACAGCGCAAAGGTTGATAACAAGGGCACCATGCCCGTCACCGATCCGGAGTCCACCGGTAGCCAGCTTGGCCGCGACCAGGACATCGTCAATAACGAAGGTGAAAGCGCGATAACCAATGGCGGCACCGCCaaccagcacaa                                                                                                                                                                                                                                       >  2:778462/1‑279 (MQ=11)
                                           atgaCGCCACGGCAAACAACAACGGCAAAACCACCGTTGACGGCAAGGATTCCACCGGTACGGAAATCAACGGTAATAACGGAAAAGTTATTCAGGACGGCGATCTGGATG‑TCAGCGGCGGCGGTCACGGTATTGATATCACCGGCGACAGCGCAACGGTGGATAACAAGGGCACCATGACCGTCACCGATCCGGAGTCCATCGGTATCCAGGTTGACGGCGACCAGGCGGTTGTTAACAACGAAGGCGAGAGAGCCATCACCAACGGCTGCACCGGCACGCAgcgta                                                                                                                                                                                                                                        >  1:1211314/1‑284 (MQ=255)
                                                  cACGGCAAACAACAACGGCAAAACCACCGTTGACGGCAAGGATTCCACCGGTACGGAAATCAACGGTAATAACGGAAAAGTTATTCAGGACGGCGATCTGGATG‑TCAGCGGCGGCGGTCACGGTATTGATATCACCGGCGACAGCGCAACGGTGGATAACAAGGGCACCATGACCGTCACCGATCCGGAGTCCATCGGTATCCAGATTGACGGCGACCAGGCGATCGTCAACAACGAAGGCGAGAGCGCAATCACCAACGGCGGCACCGGCACGCAGATCAACGGtaaa                                                                                                                                                                                                                                >  2:691096/1‑286 (MQ=255)
                                                  cACGGCAAACAACAACGGCAAAACCACCGTTGACGGCAAGGATTCCACCGGTACGGAAATCAACGGTAATAACGGAAAAGTTATTCAGGACGGCGATCTGGATG‑TCAGCGGCGGCGGTCACGGTATTGATATCACCGGCGACAGCGCAACGGTGGATAACAACGGCACCATGACCGTCACCGATCCGGAGTCCATCGGTATCCAGGTTGACGGCGACCAGGCGGTTGTTAAAAACGAAGGCGAGAGCGCCATCACCAACGGTGGCACCGGCACGCAGATTAACGGtgag                                                                                                                                                                                                                                >  1:1452575/1‑288 (MQ=255)
                                                         aagagaaacGGCAAAACCGCCGTTGACGGCAAGGATTCCACCGGTACGGAAATCAACGGTAATAACGGGAAAGTGATTCAGGACGGCGATCTGGAGG‑TCAGCGGCGGCGGTCACGGTATTGATATCACCGGCGACAGCGCAACGGTGGATAACAAGGGCACCATGACCGTCACCGATCCGGAGTCCATCGGTATCCAGGTTGACGGCGACCAGGCGGTTGTTAACAACGAAGGCGAGAGCGCCATCACCAACGGTGGCACCGGCACGCAGATTAACGGTGATGACGCCa                                                                                                                                                                                                                         <  2:4410/283‑1 (MQ=255)
                                                                      aaaCCACCGTTGACGGCAAGGATTCCACCGGTAAGAAAATCGACGGTAATGACGGAACCGTTATTCAGGACGGCGATCTGGATG‑TCAGCGGCGGCGGTCACGGTATTGATATCACCGGCGACAGCGCAACGGTGGATAACAAGGGCACCATGACCGTCACCGATCCGGAGTACATCGGTATCCAGGTTGAAGGCGACCAGGCGGTTGTTAACAACGAAGGCGAGAGCGACCTGAACAACGGTGGCACCGGCACGCAGACTAACGGTGAAGACGCAAAGGCAaagaacac                                                                                                                                                                                                            >  2:352555/1‑288 (MQ=17)
                                                                       aaCCACCGTGGACGGCAAGGATTCCACCGGTACGGAAATCAACGGTAATAACGGAAAAGTTATTCAGGACGGCGATCTGGAGG‑TCAGCGGCGGCGGTCACGGTATTAATATCACCGGCGACAGCGCAACGGTGGATAACAAGGGCACCATGACCGTCACCGATCCGGAGTCCATCGGTATCCAGGTTGACGGCGACCAGGCGGTTGTTAACAACGAAGGCGAGAGCGCCATCACCAACGGTGGCACCGGCACGCAGATTAACGGTGATGACGCCACGGCAaacaacaac                                                                                                                                                                                                           <  1:594265/289‑1 (MQ=255)
                                                                                       aaGGATTCCACCGGTACGGAAATCAACGGTAATAACGGAAAAGTTATTCAGGACGGCGATCTGGATG‑TCAGCGGCGGCGGTCACGGTATTGATATCACCGGCGACAGCGCAACGGTGGATAACAAGGGCACCATGACCGTCACCGATCCGGAGTCCATCGGTATCCAGGTTGACGGCGACCAGGCGGTTGTTAACAACGAAGGCGAGAGCGCCATCACCAACGGTGGCACCGGCACGCAGATTAACGGTGATGACGCCACGGCAAACAACAACGGCAAAac                                                                                                                                                                                                   >  1:95687/1‑281 (MQ=255)
                                                                                       aaGGATTCCACCGGTACGGAAATCAACGGTAATAACGGAAAAGTTATTCAGGACGGCGATCTGGATG‑TCAGCGGCGGCGGTCACGGTATTGATATCACCGGCGACAGCGCAACGGTGGATAACAAGGGCACCATGACCGTCACCGATCCGGAGTCCATCGGTATCCAGGTTGACGGCGACCAGGCGGTTGTTAACAACGAAGGCGAGAGCGCCATCACCAACGGTGGCACCGGCACGCAGATTAACGGTGATGACGCCACGGCAAACAACAACGGCAAAac                                                                                                                                                                                                   <  2:95687/281‑1 (MQ=255)
                                                                                       aaGAATTCCACCGGTACGGAAATCAACGGTAATAACGGAAAAGTTATTCAGGACGGCGATCTGGATG‑TCAGCGGCGGCGGTCACGGTATTGATATCACCGGCGACAGCGCAACGGTGGATAACAAGGGCACCATGACCGTCACCGATCCGGAGTCCATCGGTATCCAGGTTGACGGCGACCAGGCGGTTGTTAACAACGAAGGCGAGAGCGCCATCACCAACGGTGGCACCGGCACGCAGATTAACGGTGATGACGCCACGGCAAACAACAACGGCAAAACCACCGtt                                                                                                                                                                                            <  1:352555/288‑1 (MQ=255)
                                                                                            tacaaCCGGTACGGAAATACAGGGAAATAACGGAAAAGTTATTCAGGACGGCGTTGAGGATG‑TCAGCGGCGGCGGTCACGGTATTTATATCACCGGTGACAGCGCGACGGTGGATAACAAGGGCACCATGACCGTCACCGATCCGGAGTCCATCGGTATCCAGGTGGACGGTGACCAGGCTGTTGTTAACAACGAAGGCGAGAGCGCCATCACCAACGGTGGCACCGGCACGCAGAGTGACGGTGAGGAAGCCACGGCAAACAACAACGGCAAAACCACCGTTGACGGc                                                                                                                                                                                      <  2:1264847/285‑1 (MQ=14)
                                                                                                 ccGGTACGGAAATCAACGGTAATAACGGAAAAGTTATTCAGGACGGCGATCTGGATG‑TCAGCGGCGGCGGTCACGGTATTGATATCACCGGCGACAGCGCAACGGTGGATAACAAGGGGACCATGACCGTCACCGATCCGGAGTCCATCGGTATCCAGGTTGACGGCGACCAGGCGGTTGTTAACAACGAAGGCGAGAGCGCCATCACCAACGGTGGCACCGGCACg                                                                                                                                                                                                                                               <  2:113822/227‑1 (MQ=255)
                                                                                                 ccGGTACGGAAATCAACGGTAATAACGGAAAAGTTATTCAGGACGGCGATCTGGATG‑TCAGCGGCGGCGGTCACGGTATTGATATCACCGGCGACAGCGCAACGGTGGATAACAAGGGCACCATGACCGTCACCGATCCGGAGTCCATCGGTATCCAGGTTGACGGCGACCAGGCGGTTGTTAACAACGAAGGCGAGAGCGCCATCACCAACGGTGGCACCGGCACg                                                                                                                                                                                                                                               >  1:113822/1‑227 (MQ=255)
                                                                                                    gTACGGAAATCAACGGTAATAACGGAAAAGTTATTCAGGACGGCGATCTGGATG‑TCAGCGGCGGCGGTCACGGTATTGATATCACCGGCGACAGCGCAACGGTGGATAACAAGGGCACCATGACCGTCACCGATCCGGAGTCCATCGGTATCCAGGTTGACGGCGACCAGGCGGTTGTTAACAACGAAGGCGAGACCTCCATCACCAACGGTGGCACCGGCACTCAGATCAACGGTGATGACGCCACGGCAAACAACAACGGCCAAACCACCGTTGACGGCAAGGAtt                                                                                                                                                                               >  1:1261393/1‑288 (MQ=255)
                                                                                                    gTACGGAAATCAACGGTAATAACGGAAAAGTTATTCAGGACGGCGATCTGGATG‑TCAGCGGCGGCGGTCACGGTATTGATATCACCGGCGACAGCGCAACGGTGGATAACAAGGGCACCATGACCGTCACCGATCCGGAGTCCATCGGTATCCAGGTTGACGGCGACCAGGCGGTTGTCAACAACGAAGGCGAGAGCGCCCTCACCAACGGTGGCACTGGACCGCAGATTAACGACGATGACGCCACGGACAACAACAGCGGCCAAACACCCGTTGACGACAAggcat                                                                                                                                                                               >  1:401790/1‑285 (MQ=14)
                                                                                                    gTACGGAAATCAACGGTAATAACGGAAAAGTTATTCAGGACGACGATCTGGGTG‑TCAGCGGCCGCCGTCACGGTATTGATATCACCGCCGACCGCACAACGGTGGATAACAATGTCACCGTGACCCTTCCCGACCCGGTGTACACCGGTAGCCAGGTTGACGGCGACCAGGCGGTTGTTAACAACGAATGCGAAAGCGCCATCACCCACGGATCCACCGGCACGCCGATTAACGGAGATCAAGCCCCGGCCACTAAACACGGAAACACCCCCCTTTACGGccatgact                                                                                                                                                                               >  2:1467081/1‑281 (MQ=255)
                                                                                                     tACGGAAATCAACGGTAATAACGGAAAAGTTATTCAGGACGGCGATCTGGATG‑TCAGCGGCGGCGGTCACGGTATTGATATCACCGGCGACAGCGCAACGGTGGATAACAAGGGCACCATGACCGTCACCGATCCGGAGTCCATCGGTATCCAGGTTGACGGCGACCAGGCGGTTGTTAACAACGAAGGCGAGAGCGCCATCACCAACGGTGGCACCGGCACGCAGATTAACGGTGATGACGCCACGGCAAACAACAACGGCAAAACCACCGTTGCCGGCAATGATTcc                                                                                                                                                                             >  1:1436723/1‑289 (MQ=255)
                                                                                                         gagctaaacaataataaGGGAAAAGGTAATCAGAAGAGCGATGT‑GATGAGCAGCGGCGGCGGTCACGGTATTGTTATCACCGGGTACGTCGCAACACTGAGGAACCAGAGCACCACAGGCGTCGCCGAGCCGGCAGCGACAGGTATGCATGATAGCGGCGACCAGGCCGTTGTTAACAACGAAGGCGAGAGCGCCATCACCAACGGTGGCACCGGCACGCAGATTAACGGTGATGACGCCACGGCAAACAACAACGGCAAAACCACCGTTGACGGCAAGGATTCCAc                                                                                                                                                                           <  2:1051413/276‑1 (MQ=9)
                                                                                                               aaCGGTAATAACGGAAAAGTTATTCAGGACGGCGATCTGGATG‑TCAGCGGCGGCGGTCACGGTATTGATATCACCGGCGACAGCGCAACGGTGGATAACAAGGGCACCATGACCGTCACCGATCCGGAGTCCATCGGTATCCAGGTTGACGGCGACCAGGCGGTTGTTAACAACGAAGGCGAGAGCGCCATCACCAACGGTGGCACCGGCACGCAGATTAACGGTGATGACGCCACGGCAAACAACAACGGCAAAACCACCGTTGACGGCAAGGATTCCACCGGTACgg                                                                                                                                                                   >  1:1197980/1‑289 (MQ=255)
                                                                                                                        aaCGGAAAAGTTATTCAGGACGGCGATCTGGATG‑TCAGCGGCGGCGGTCACGGTATTGATATCACCGGCGACAGCGCAACGGTGGATAACAAGGGCACCATGACCGTCACCGATCCGGAGTCCATCGGTATCCAGGTTGACGGCGACCAGGCGGTTGTTAACAACGAAGGCGAGAGCGCCATCACCAACGGTGGCACCGGCACGCAGATTAACGGTGATGACGCCACGGCAAACAACAACGGCAAAACCACCGTTGACGGCAAGGATTCCACCGGTACGGAAATTGCTg                                                                                                                                                          <  1:1301616/289‑1 (MQ=255)
                                                                                                                            gAAAAGTTATGCAGGAGGGCGAGCTGGAGG‑TCAGCGGAGGCGGGAACGGTATTGATAACACCGGCGACAGCGCAATGGTGGATAACAAGGGCACCATGACCGTCACCGATCCGGAGTCCATCGGTATCCAGGTTGACGGCGACCAGGCGGTTGTTAACAACGAAGGCGAGGGCGCCATCACCAACGGTGGCACCGGCACGCAGATTAACGGTGATGACGCCACGGCAAACAACAACGGCAAAACCACCGTTGACGGCAAGGATTCCACCGGTACGGAAATTGCTGGCa                                                                                                                                                       <  1:1467081/288‑1 (MQ=17)
                                                                                                                             aaaaGTTATTCAGGACGGCGATCTGGATG‑TCAGCGGCGGCGGTCACGGTATTGATATCACCGGCGACAGCGCAACGGTGGCTAACAAGGGCACCATGACCGTCACCGATCCGGAGTCCATCGGTATCCAGGTTGACGGCGACCAGGCGGTTGTTAACAACGAAGGCGAGAGCGCCATCACCAACGGTGGCACCGGCACGCAGATTAACGGTGATGAAGCCACGGCAAACAACAACGGCAAAACCAACGTTGCCGGCAAGGATTCCACCGGTACGGAAATTGTTAGCAAt                                                                                                                                                     >  2:159982/1‑289 (MQ=255)
                                                                                                                              aaaGTTATTCAGGACGGCGATCTGGATG‑TCAGCGGCGGCGGTCACGGTATTGCTATCACCGGCGACAGCGCAACGGTGGATAACAAGGGCACCATGACCGTCACCGATCCGGAGTCCCTCGGTATCCAGGTTGACGGCGACCAGGCGGTTGTTAACAACGAAGGCGAAAGCGCCATCCCCAACGGTGGCACCGGCACGCAGATTAACGGTGATGACGCCACGGCAAACAACAACGCCACAACCACCGTTGACGGCAAGGATTCCAACGGTACGGAACTTGCTGGCaaaa                                                                                                                                                    >  1:1349980/1‑287 (MQ=255)
                                                                                                                                   tATTCAGGACGGCGATCTGGATG‑TCAGCGGCGGCGGTCACGGTATTGATATCACCGGCGACAGCGCAACGGTGGATAACAAGGGCACCATGACCGTCACCGATCCGGAGTCCATCGGTATCCAGGTTGACGGCGACCAGGCGGTTGTTAACAACGAAGGCGAGAGCGCCATCACCAACGGTGGCACCGGCACGCAGATTAACGGTGATGACGCCACGGCAAACAACAACGGCAAAACCACCGTTGACGGCAAGGATTCCACCGGTACGGAAATTGCTGGCAATAACgg                                                                                                                                                <  1:159982/288‑1 (MQ=255)
                                                                                                                                       cAGGACGGCGATCTGGATG‑TCAGCGGCGGCGGTCACGGTATTGATATCACCGGCGACAGCGCAACGTTGGATAACAAGGGCACCATGACCGTCACCGTTCCGGAGTCCATCGGTATCCAGGTTGACGGCGACCAGGCGGTTGTTAACAACGAAGGCGAGAGCGCCATCACCAACGGTGGCACCGGCACGCAGATTAACGGTGATGACGCCACGGCAAACAACAACGGCAAAACCACCGTTGACGGCAAGGATTCCACCGGTACGGAAATTGCTGGCAATAACGGGAAgg                                                                                                                                           <  1:108203/289‑1 (MQ=255)
                                                                                                                                          gACGGCGATCTGGATG‑TCAGCGGCGGCGGTCACGGTATTGATATCACCGGCGACAGCGCAACGGTGGATAACAAGGGCACCATGACCGTCACCGATCCGGAGTCCATCGGTATCCAGGTTGACGGCGACCAGGCGGTTGTTAACAACGAAGGCGAGAGCGCCATCACCAACGGTGGCACCGGCACGCAGATTAACGGTGATGACGCCACGGCa                                                                                                                                                                                                                    >  2:503680/1‑213 (MQ=255)
                                                                                                                                          gACGGCGATCTGGATG‑TCAGCGGCGGCGGTCACGGTATTGATATCACCGGCGACAGCGCAACGGTGGATAACAAGGGCACCATGACCGTCACCGATCCGGAGTCCATCGGTATCCAGGTTGACGGCGACCAGGCGGTTGTTAACAACGAAGGCGAGAGCGCCATCACCAACGGTGGCACCGGCACGCAGATTAACGGTGATGACGCCACGGCa                                                                                                                                                                                                                    <  1:503680/213‑1 (MQ=255)
                                                                                                                                               ccgtcagaaTG‑TCAGCGGCAGCGGTTAGCGGACAGATATAGCCGGGTACAAGGGACCGGGGAATAACAAGAACACAATGACCGACCCCGAGCCGAAGTCTGAGGGGATCAACATAGTCGGTGACAAGGGCATCGTCAATAACGAAGGAGAGAGCACCATCACCAACGGTGGCGCCGACCCCCAGATTAAGGGTGATGATGCCACGGCAAACAACAACGGCAAAACCACCGTTGACGGCAAGGATTCCACCGGTACGGAAATCAACGGTAATAACGGAAAAGTTATTCa                                                                                                                                    <  2:1392456/280‑1 (MQ=12)
                                                                                                                                                         g‑TCAGCGGCGGCGGTCACGGTATTGATATCACCGGCGACAGCGCAACGGTGGATAACAAGGGCACCATGACCGTCACCGATCCGGAGTCCATCGGTATCCAGGTTGACGGCGACCAGGCGGTTGTTAACAACGAAGGCGAGAGCGCCATCACCAACGGTGGCACCGGCACGCAGATTAACGGTGATGACGCCACGGCAAACAACAACGGCAAAACCACCGTTGACGGCAAGGATTCCACCGGTACGGAAATTGCTGGCAATAACGGGAAGGTGATTCAGGACGGCGa                                                                                                                           >  1:578092/1‑287 (MQ=255)
                                                                                                                                                             aGCGGCGGCGGTCACGGTATTGATATCACCGGCGACAGCGCAACGGTGGATAACAAGGGCACCATGACCGTCACCGATCCGGAGTCCATCGGTATCCAGGTTGACGGCGACCAGGCGGTTGTTAACAACGAAGGCGAGAGCACCATCACCAACGGTGGCACCGGCACTCAGATCAACGGTAACGACGCCACGGCGAATAACAACGGAAAAACCAACGTTGACGGCAAAGATTCCACGGGTACCAAAATAGACGGCAATAACggcattgtaattctggctggcaaatg                                                                                                                        >  2:977915/1‑263 (MQ=1)
                                                                                                                                                              gcggcggcgGTCACGGTATTGATATAACCGGCGACAGCGCAACGGTGGATAACAAGGGCACCATGACCGTCACCGATCCGGAGTCCATCGGTATCCAGGTTGACGGCGACCAGGCGATTGTCAACAACGAAGGCGAGAGCGCCATCACGAATGGCGGCACCGGCACGAAGATCAACGGTGACGACGCCACCGCAAATAACAAAGGAAAAACCACCGTTGCCGCCAATGATTCCACCGGTACCAACATAGCGGGCAATATCGGGACGGtctatcaaacagacatgctgac                                                                                                                     >  2:1068833/1‑268 (MQ=11)
                                                                                                                                                                    gcggTCACGGTATTGATATCACCGGCGACAGCGCAACGGTGGATAACAAGGGCACCATGACCGTCACCGATCCGGAGTCCATCGGTATCCAGGTTGACGGCGACCAGGCGGTTGTTAACAACGAAGGCGAGAGCGCCATCACCAACGGTGGCACCGGCACGCAGATTAACGGTGATGACGCCACGGCAAACAACAACGGCAAAACCACCGTTGACGGCAAGGATTCCACCGGTACGGAAATTGCTGGCAATAACGGGAAGGTGATTCa                                                                                                                                    >  2:819275/1‑268 (MQ=255)
                                                                                                                                                                    gcggTCACGGTATTGATATCACCGGCGACAGCGCAACGGTGGATAACAAGGGCACCATGACCGTCACCGATCCGGAGTCCATCGGTATCCAGGTTGACGGCGACCAGGCGGTTGTTAACAACGAAGGCGAGAGCGCCATCACCAACGGTGGCACCGGCACGCAGATTAACGGTGATGACGCCACGGCAAACAACAACGGCAAAACCACCGTTGACGGCAAGGATTCCACCGGTACGGAAATTGCTGGCAATAACGGGAAGGTGAGTCa                                                                                                                                    <  1:819275/268‑1 (MQ=255)
                                                                                                                                                                                ggcatcgcaagatgtgcatcagaaCGGGGGATAACAAGGGCACCATGACCGTCACCGATCCGGAGTCCATCGGTATCCAGGTTGACGGCGACAAGGCGGTCGTTAACAACGAAGGCGAGAGCGCCATCACCAACGGTGGCACCGGCACGCAGATTAACGGTGATGACGCCACGGCAAACAACAACGGCAAAACCACCGTTGACGGCAAGGATTCCACCGGTACGGAAATTGCTGGCAATAACGGGAAGGTGATTCAGGACGGCGATCTGGATGTCAGCGGCGGCGGTCa                                                                                                   <  2:818931/267‑1 (MQ=17)
                                                                                                                                                                                    aattgccGGGGACAGCCCAACGGTGGAAAACTAGGGGTCAATGACCGGAACCGAACCGGGATCTAGCGGTAGCGAGGCGGCGGACGCGCCAGCGGTGGATAAGAAAGAGGGCGAGAGCACCATCACCAACGGTGGAACCGGCACGCAGATTAACGGTGATGACGCCACGGCAAACAACAACGGCAAAACCACCGTTGACGGCAAGGATTCCACCGGTACGGAAATTGCTGGCAATAACGGGAAGGTGATTCAGGACGGCGATCTGGATGTCAGCGGCGGCGGTCACGGt                                                                                               <  2:604631/284‑1 (MQ=14)
                                                                                                                                                                                       cgtctatgaaggacagaCGGTGGATAACAAGCGCACCATGACCGTCACCGATCCGGAGTCCATCGGTATCCAGGTTGACGGTGACAAGGCCATCGTCAACAACGAAGGCGAGAGCGCCATCACCAACGGTGGCACCGGCACCCAGATTAACGGTGATGACGCCACGGCAAACAACAACGGCAAAACCACCGTTGACGGCAAGGATTCCACCGGTACGGAAATTGCTGGCAATAACGGGAAGGTGATTCAGGACGGCGATCTGGATGTCAGCGGCGGCGGTCACGGTa                                                                                              <  2:305771/271‑1 (MQ=11)
                                                                                                                                                                                       cACCGGCGACAGCGCAACGGTGGATAACAAGGGCACCATGACCGTCACCGATCCGGAGTCCATCGGTATCCAGGTTGACGGCGACCAGGCGGTTGTTAACAACGAAGGCGAGAGCGCCATCACCAACGGTGGCACCGGCACGCAGATTAACGGTGATGACGCCACGGCAAACAACAACGGCAAAACCACCGTTGACGGCAAGGATTCCACCGGTACGGAAATTGCTGGCAATAACGGGCAGGTGATTCAGGAAGGCg                                                                                                                            >  1:1135744/1‑257 (MQ=255)
                                                                                                                                                                                        aCCGGCGACAGCGCAACGGTGGATAACAAGGGCACCATGACCGTCACCGATCCGGAGTCCATCGGTATCCAGGTTGACGGCGACCAGGCGGTTGTTAACAACGAAGGCGAGAGCGCCATCACCAACGGTGGCACCGGCACGCAGATTAACGGTGATGACGCCACGGCAAACAACACCGGCAAAACCACCGTTGACGGCAAGGATTCCACCGGTACGGAAATTGCTGGCAATAACGGGAAGGTGATTCAGGACGGCGATCTGGATGTCAGCGGCGGCGGTCACGGTATTg                                                                                           >  1:1337074/1‑289 (MQ=255)
                                                                                                                                                                                        aCCGGCGACAGCGCAACGGTGGATAACAAGGGCACCATGACCGTCACCGATCCGGAGTCCATCGGTATCCAGGTTGACGGCGACCAGGCGGTCGTCAACAACGAAGGCGAGAGCGCCATCACCAACGGCGGCACCGGCACGCAGATCAACGGTAACGACGCCACCGCGAATAACCACGGCATTACAAACATCTACGGCTACGGACCCACCGGTACGGAAATTGCTGGCCATAGCGGGAAGGTGATTCAAGACGGCGAACTGGATGTGAGCGGAGGCGGTCACGGTATTg                                                                                           >  2:1027790/1‑289 (MQ=17)
                                                                                                                                                                                                             gATAACAAGGGCACCATGACCGTCACCGATCCGGAGTCCATCGGTATCCAGGTTGACGGCGACCAGGCGGTTGTTAACAACGAAGGCGAGAGCGCCATCACCAACGGTGGCACCGGCACGCAGATTAACGGTGATGACGCCACGGCAAACAACAACGGCAAAACCACCGTTGACGGCAAGGATTCCACCGGTACGGAAATTGCTGGCAATAACGGGAAGGTGATTCAGGACGGCGATCTGGATGTCAGCGGCGGCGGTCACGGTa                                                                                              >  1:1421130/1‑265 (MQ=255)
                                                                                                                                                                                                             gATAACAAGGGCACCATGACCGTCACCGATCCGGAGTCCATCGGTATCCAGGTTGACGGCGACCAGGCGGTTGTTAACAACGAAGGCGAGAGCGCCATCACCAACGGTGGCACCGGCACGCAGATTAACGGTGATGACGCCACGGCAAACAACAACGGCAAAACCACCGTTGACGGCAAGGATTCCACCGGTACGGAAATTGCTGGCAATAACGGGAAGGTGATTCAGGACGGCGATCTGGATGTCAGCGGCGGCGGTCACGGTa                                                                                              <  2:1421130/265‑1 (MQ=255)
                                                                                                                                                                                                                aaCAAGGGCACCATGACCGTCACCGATCCGGAGTCCATCGGTATCCAGGTTGACGGCGACCAGGCGATCGTCAACAACGAAGGCGAGAGCACTATCACCAATGGCGGCACCGGCACGCAGATCAACGGTGATGACGCCACCGCAAATAACAGCGGAAAAACCACCGTTGACGGAAAAGATTCCACCGGTACGAAAATCGCTGGCAATAACGGCAAGGTGAATCTGGAGGGTGCGCTGGATGTTAGCGGCGGCGGTCACGGTATTGGTATCTTCGGCGATCGCGCGACgg                                                                   >  2:481624/1‑289 (MQ=11)
                                                                                                                                                                                                                 aCAAGGGCACCATGACCGTCACCGATCCGCAGTCCATGGGTATCCAGGTCGACGGCGACAAGGCCGTTGTTAACAACGAAGGCGAGAGCGCCATCACCAACGGTGGCACCGGCACGCAGATTAACGGTGATGACGCCACGGCAAACAACAACGGCAAAACCACCGTTGACGGCAAGGATTCCACCGGTACGGAAATTGCTGGCAATAACGGGAAGGTGATTCAGGACGGCGATCTGGATGTCAGCGGCGGCGGTCACGGTATTGATATCACCGGCGACAGCGCAACGGt                                                                  <  1:573583/289‑1 (MQ=255)
                                                                                                                                                                                                                   aaGGGCACCATGACCGTCACCGATCCGGAGTCCATCGGTATCCAGGTTGACGGCGACCAGGCGGTTGTTAACAACGAAGGCGAGAGCGCCATCACCAACGGTGGCACCGGCACGCAGATTAACGGTGATGACGCCACGGCAAACAACAACGGCAAAACCACCGTTGACGGCAAGGATTCCACCGGTACGGAAATTGCTGGCAATAACGGGAAGGTGAATCAGGACGGCGATCTGGATGTCAGCGGCGGCGGACACGGTATTGATATCACCGGCGACAGCGCAACGGTga                                                                >  1:350215/1‑288 (MQ=255)
                                                                                                                                                                                                                     gggCACCATGACCGTCACCGATCCGGAGTCCATCGGTATCCAGGTTGACGGCGACCAGGCGGTTGTTAACAACGAAGGCGAGAGCGCCATCACCAACGGTGGCACCGGCACGCAGATTAACGGTGATGACGCCACGGCAAACAACAACGGCAAAACCACCGTTGACGGCAAGGATTCCACCGGTACGGAAATTGCTGGCAATAACGGGAAGGTGATTCAGGACGGCGATCTGGATGTCAGCGGCGGCGGTCACGGTATTGATATCACCGGCGACAGCGCAACGGTGGAt                                                              >  1:614804/1‑289 (MQ=255)
                                                                                                                                                                                                                     gggCACCATGACCGTCACCGATCCGGAGTCCATCGGTATCCAGGTTGACGGCGACCAGGCGGTTGTTAACAACGAAGGCGAGAGCGCCATCACCAACGGCGGCACCGGCCCGCAGATTAACGGTGATGACGCCACCGCCAACAACAACGGCAAAACCACTGTTGACGGAAAGGATTCCACGGGTACGGAAATTGCGGGCAATATCGGCATGGTGAATCTGGATGGAACCCTGGATGTCAGCGGCGGCGGGCACGGTGTTGAGAACACCGGGGACAGCGCAACGGTTGac                                                              >  2:145250/1‑288 (MQ=17)
                                                                                                                                                                                                                      cagcgccaggcgggtacaaaacacaggTCCATGGGTATCCAGATCGACGGTGACAAGGCCGTCGTCAACAACGAAGGCGAGCGCGCCATCACCAACGGTGGCACCGGCACGCAGATTAATGGGGATGACGCCACGGCAAACAACAACGGCAAAACCACCGTTGACGGCAAGGATTCCACCGGTACGGAAATTGCCGGCAATAACGGGAAGGTGATTCAGGACGGCGATCTGGATGTCAGCGGCGGCGGTCACGGTATTGATATCACCGGCGACAGCGCAACGGTGGAt                                                              <  2:266359/262‑1 (MQ=11)
                                                                                                                                                                                                                       gCACCATGACCGTCACCGATCCGGAGTCCATCGGTATCCAGGTTGCCGATACACAGCCGATTGTTAACAACGAAGGCGACAGCGCCATCACCAACGGTGGCACCGGCACGCAGATTAACGGTGATGACGCCACGGCAAACAACAACGGCAAAACCACCGTTGACGGCAAGGATTTCACCGGTACGGAAATTGCTGGCAATAACGGGAAGGTGATTAAGGACGGCGATCTGGATGTCAGCGGCGGAGGTCACGGTATTGATATAACCGGCAACAGCGCAACGGTGGATa                                                             >  2:301683/1‑288 (MQ=17)
                                                                                                                                                                                                                       gCACCATGACCGTCACCGATCCGGAGTCCATCGGTATCCAGGTTGACGGCGACCAGGCGGTTGTTAACAACGAAGGCGAGAGCGCCATCACCAACGGTGGCACCGGCACGCAGATTAACGGTGATGACGCCACGGCAAACAACAACGGCAAAACCACCGTTGACGGCAAGGATTCCACCGGTACGGAAATTGCTGGCAATAACGGGAAGGTGATTCAGGACGGCGATCTGGATGTCAGCGGCGGCGGGCACGGTATTGATATCACCGGCGACAGCGCAACGGTGGATaa                                                            >  1:1321368/1‑289 (MQ=255)
                                                                                                                                                                                                                       gCACCATGACCGTCACCGATCCGGAGTCCATCGGTATCCAGGTTGACGGCGACCAGGCGGTTGTTAACAACGAAGGCGAGAGCGCCATCACCAACGGTGGCACAGGCACGCAGATTAACGGTGATGACGCCACGGCAAACAACAGCGGCAAAACCACCGTTGACGGCAAGGATTCAACCGGTACCGAAATTGCTGGCAATAGCGGGAAGGTACTTCAGGACGGTGACCTGGATGTCAGCGGCGGAGGTCACGGGATTGATAACACCGGCGACAGCGAAACGGTGGACaa                                                            >  1:947539/1‑289 (MQ=17)
                                                                                                                                                                                                                       gCACCATGACCGTCACCGATCCGGAGTCCATCGGTATCCAGGTTGACGGCGACCAGGCGGTTGTCAACAACGAAGGCGAGAGCGCCATCACCAACGGCGGCACCGGCACGCAGATTAACGGTGGTGACGCCACGGCAACCAACAACGGCAAAACCACCGTTGACGGCAAGGATTCCACAGGTACGGAAATTGATGGCAATAACGGGAAGGTGATTCAGGACGGAGATCTGGATGTAAGCGGCCGACGCATGGGTATTGAGATCACCGTGCACAGCGCCACGGTGGATaa                                                            >  2:1363964/1‑289 (MQ=17)
                                                                                                                                                                                                                       gCACCATGACCGTCACCGATCCGGAGTCCATCGGTATCCAGGTTGACGGCGACCAGGCGATTGTCAACAACGAAGGCGAGAGCGCCATCACCAACGGCGGCACCGGCACTCAGATTAACGGTAACGACGCCACCGCAAATCACAACGGCAAAACCACCGTTGATGGCAAGGATTCCACCGGTACGAAAATCGCGGGCAATAACGGGAAGGTGAATCCGGACGCCTATCCACATGTCAGCCGGCCCGCTACCGGTATCGATCTCAACGGCGCGAGCGCCACgggactcaa                                                            >  2:1066881/1‑282 (MQ=14)
                                                                                                                                                                                                                        cACCATGACCGTCACCGATCCGGAGTCCATCGGTATCCAGGTTGACGGCGACCAGGCGGTTGTTAACAACGAAGGCGAGAGCGCCATCACCAACGGTGGCACCGGCACGCAGATTAACGGTGATGACGCCACGGCAAACAACAACGGCAAAACCACCGTTGACGGCAAGGATTCCACCGGTACGGAAATTGCTGGCAATAACGGGAAGGTGATTCAGGACGGCGATCTGGATGTCAGCGGCGGCGGTCACGGTATTGATATCACCGGCGACAGCGCAACGGTGGATAAc                                                           >  1:963553/1‑289 (MQ=255)
                                                                                                                                                                                                                        cACCATGACCGTCACCGATCCGGAGTCCATCGGTATCCAGGTTGACGGCGACCAGGCGGTTGTTAACAACGAAGGCGAGAGCGCCATCACCAACGGTGGCACCGGCACGCAGATCAACGGTGAAGACGCCACCGGAAACAATAACGGAAAAACCACCGTTGACGGCAAGGATTCTACGGGAACTAAAATCGCTGGCAATGACGGGAAGGTGATTCAGGACGGCGATCTGGATGTCAGACGCTGAGGGCTCTGTGTTGATAACATCggtgcactcgccacgcgtgaacac                                                           >  2:631970/1‑267 (MQ=18)
                                                                                                                                                                                                                           cATTACCGTCACCTGTCCGGAAGCCATGGGTATACAGGTGTACGGCGACCAGGAGGTGGTTAACAAGGAAGGCGAGGGGGCCATCACCAACGGTGGTACCGGTACGCATATTAACGGTGATGACGCCATGGCAAAGAACAGCGGCAAAACCACCGTCGGATGTAAGGATTCGACCGGTACGGAAATTGCCGGCAATAACGGAAAGGTGATTCAGGACGGCGATCTGGATGTCAGCGGAGGCGGTCACGGTATTGATATCACCGGCGACAGCGCAACGGTGGATAACAAg                                                        <  2:1197980/289‑1 (MQ=14)
                                                                                                                                                                                                                           cATGACCGTCACCGATCCGGAGTCCATCGGTATCCAGGTTGACGGCGACCAGGCGGTTGTTAACAACGAAGGCGAGAGCGCCATCACCAACGGTGGCACCGGCACGCAGATTAACGGTGATGACGCCACGGCAAACAACAACGGCAAAACCACCGTTGACGGCAAGGATTCCACCGGTACGGAAATTGCTGGCAATAACGGGAAGGTGATTCAGGa                                                                                                                                 <  2:86841/216‑1 (MQ=255)
                                                                                                                                                                                                                           cATGACCGTCACCGATCCGGAGTCCATCGGTATCCAGGTTGACGGCGACCAGGCGGTTGTTAACAACGAAGGCGAGAGCGCCATCACCAACGGTGGCACCGGCACGCAGATTAACGGTGATGACGCCACGGCAAACAACAACGGCAAAACCACCGTTGACGGCAAGGATTCCACCGGTACGGAAATTGCTGGCAATAACGGGAAGGTGATTCAGGa                                                                                                                                 >  1:86841/1‑216 (MQ=255)
                                                                                                                                                                                                                             agatcatCACCCAACCTGAGTCCCTCGGTATCTAGGTTTACGGCGACCATGTGGTTTTAACCAACGAATGCGTGATCACCGTCCACAACGGTGGCACCAGCACGAAGATTACCGGTGTTGATGCTACGGAAAACAACAACGGCAAAACCACCGGTGACGGCAAGGGTTCCAACGGTAATGAAATGGCGGGCAAGAACGGAAAGGGGATTCAGGACGGCGATCTGGATGTCAGCGGCGGCGGTCACGGTATTGATATCACCGGCGACAGCGAAACGGTGGATAACAAggg                                                      <  2:1349980/283‑1 (MQ=9)
                                                                                                                                                                                                                                 cGTGACCGATCCGGAAGCGATCGGGATCAAGGTTGATGGCGACCAGGCGGTGGTTAACAACGGAGGAGAGAGCGCCATCACCAACCGTGGCACCGGCACGCAGATTAACGGTGATAATGCCACGGCAAACAACAACGGCAAAACCACCGTTGACGGCAAGGATTCCACCGGTACGGAAATTGCTGGCAATAACGGGAAGGTGATTCAGGACGGCGATCTGGATGTCAGCGGCGGCGGTCACGGTATTGATATCACCGGCGACAGCGCAACGGTGGATAACAAGGGCAcc                                                  <  1:1316490/289‑1 (MQ=17)
                                                                                                                                                                                                                                 cGTCACCGATCCGGAGTCCATCGGTATCCAGGTTGACGGCGACCAGGCGGTTGTTAACAACGAAGGCGAGAGCGCCATCACCAACGGTGGCACCGGCACGCAGATTAACGGTGATGACGCCACGGCAAACAACAACGGCAAAACCACCGTTGACGGCAAGGATTCCACCGGTACGGAAATTGCTGGCAATAACGGGAAGGTGATTCAGGACGGCGATCTGGATGTCAGCGGCGGCGGTCACGGTATTGATATCACCGGCGACAGCGCAACGGTGGATAACAAGGGCAcc                                                  <  2:614804/289‑1 (MQ=255)
                                                                                                                                                                                                                                    cACCGATCCGGAGTCCATCGGTATCCAGGTTGACGGCGACCAGGCGGTTGTTAACAACGAAGGCGAGAGCGCCATCACCAACGGTGGCACCGGCACGCAGATTAACGGTGATGACGCCACGGCAAACAACAACGGCAAAACCACCGTTGACGGCAAGGATTCCACCGGTACGGAAATTGCTGGCAATAACGGGAAGGTGATTCAGGACGGCGATCTGGATGTCAGCGGCGGCGGTCACGGTATTGATATCACCGGCGACAGCGCAACGGTGGATAACAAGGGCACCATg                                               >  1:464039/1‑289 (MQ=255)
                                                                                                                                                                                                                                     aCCGATCCGGAGCCCATCGGTATCCAGGTTGACGGCGACCAGGCGGTTGTTAACAACGAAGGCGAGAGCGCCATCACCAACGGTGGCACCGGCACGCAGATTAACGGTGATGACGCCACGGCAAACAACAACGGCAAAACCACCGTTGACGGCAAGGATTCCACCGGTACGGAAATTGCTGGCAATAACGGGAAGGTGATTCAGGACGGCGATCTGGATGTCAGCGGCGTCGGTCACGGTCTTGATATCACCGGCGACAGCGCAACGGTGGATAACAAGGGCACCATg                                               >  1:1015866/1‑288 (MQ=255)
                                                                                                                                                                                                                                         aTCCGGAGTCCATCGGTATCCAGGTTGACGGCGACCAGGCGGTTGTTAACAACGAAGGCGAGAGCGCCATCACCAACGGTGGCACCGGCACGCAGATTAACGGTGATGACGCCACGGCAAACAACAACGGCAAAACCACCGTTGACGGCAAGGATTCCACCGGTACGGAAATTGCTGGCACTAACGGGAAGGTGATTCAGGACGGCGATCTGGATGTCAGCGGCGGCGGTCACGGTATTGATATCACCGGCGACAGCGCAACGGTGGATAACAAGGGCCCCATGACCGt                                          >  1:825550/1‑289 (MQ=255)
                                                                                                                                                                                                                                          tCCGGAGTCCATCGGTATCCAGGTTGACGGCGACCAGGCGTTTGTCAACAACGAAGGCGAGGGCGCCATCACCAACGGTGGCACCGGCACGCAGATTAACGGTGATGACGCCACGGCAAACAACAACGGCAAAACCACCGTTGACGGCAAGGATTCCACCGGTACGGAAATTGCTGGCAATAACGGGAAGGTGATTCAGGACGGCGATCTGGATGTCAGCGGCGGCGGTCACGGTATTGATATCACCGGCGACAGCGCAACGGTGGATAACAAGGGCACCATGACCGt                                          <  1:735538/288‑1 (MQ=255)
                                                                                                                                                                                                                                                 tCCATGGGTATCCAGGTTGACGGCGACCAGGCGGTTGTTAACAACGAAGGCGAGAGCGCCATCACCAACGGTGGCACCGGCACGCAGATTAACGGTGATGACGCCACGGCAAACAACAACGGCAAAACCACCGTTGACGGCAAGGATTCCACCGGTACGGAAATTGCTGGCAATAACGGGAAGGTGATTCAGGACGGCGATCTGGATGTCAGCGGCGGCGGTCACGGTATTGATATCACCGGCGACAGCGCAACGGTGGATaa                                                            <  1:1068770/263‑1 (MQ=255)
                                                                                                                                                                                                                                                 tCCATGGGTATCCAGGTTGACGGCGACCAGGCGGTTGTTAACAACGAAGGCGAGAGCGCCATCACCAACGGTGGCACCGGCACGCAGATTAACGGTGATGACGCCACGGCAAACAACAACGGCAAAACCACCGTTGACGGCAAGGATTCCACCGGTACGGAAATTGCTGGCAATAACGGGAAGGTGATTCAGGACGGCGATCTGGATGTCAGCGGCGGCGGTCACGGTATTGATATCACCGGCGACAGCGCAACGGTGGATaa                                                            >  2:1068770/1‑263 (MQ=255)
                                                                                                                                                                                                                                                 tCCATCGGTATCCAGGTTGACGGCGACCAGGCGGTTGTTAACAACGAAGGCGAGAGCGCCATCACCAACGGCGGCACCGGCACGCAGATTAACGGTAACGACGCCACCGCAAACAACCACGCCCTTATCCACATCGACCGCAAGCATCCCACCGGTACGGGAATTGCTGGCAATAACGGGTAGGATATTCAGGACAGCGATCTGGCTGTCAGCGGCGGCCATAACGGTATTAATATCACCGGCGAACGGACAACGGTGGCAGACATGGACAACCTGACCGTCACCGAt                                   >  2:577651/1‑288 (MQ=255)
                                                                                                                                                                                                                                                   cATCGGTATCCAAGTTGCACGCGACCAGGCGGTTGTTAACAACGAAGGCGAGAGCGCCATCACCAACGGTGGCACCGGCACGCAGATTAACGGTGATGACGCCACGGCAAACAACAACGGCAAAACCACCGTTGACGGCAAGGATTCCACCGGTACGGAAATTGCTGGCAATAACGGTAAGGTGATTCAGAACGGCGATCTGGATGTCAGCGGCGGCGGGCACGCTATTGCTACCTCCGGCGTCTGCAAAACGGTGGATAACAAGGGCACCATGACCGTCACCGATCCg                                <  2:963553/289‑1 (MQ=17)
                                                                                                                                                                                                                                                     tCGGTATCCAGGTTGACGGCGACCAGGCGGTTGTTAACAACGAAGGCGAGAGCGCCATCACCAACGGTGGCACCGGCACGCAGATTAACGGTGATGACGCCACGGCAAACAACAACGGCAAAACCACCGTTGACGGCAAGGATTCCACCGGTACGGAAATTGCTGGCAATAACGGGAAGGTGATTCAGGACGGCGATCTGGATGTCAGCGGCGGCGGTCACGGTATTGATATCACCGGCGACAGCGCAACGGTGGATAACAAGGGCACCATGACCGTCACCGATCCGGa                              >  1:1341690/1‑289 (MQ=255)
                                                                                                                                                                                                                                                         tATCCAGGTTGACGGCGACCAGGCGGTTGTTAACAACGAAGGCGAGAGCGCCATCACCAACGGTGGCACCGGCACGCAGATTAACGGTGATGACGCCACGGCAAACAACAACGGCAAAACCACCGTTGACGGCAAGGATTCCACCGGTACGGAAATTGCTGGCAATAACGGGAAGGTGATTCAGGACGGCGATCTGGATGTCAGCGGCGGCGGTCACGGTATTGATATCACCGGCGACAGCGCAACGGTGGATAACAAGGGCACCATGACCGTCACCGATCCGGAGTc                           <  1:301683/288‑1 (MQ=255)
                                                                                                                                                                                                                                                           tCCAGGTTGACGGCGACCAGGCGGTTGTTAACAACGAAGGCGAGAGCGCCATCACCAACGGTGGCACCGGCACGCAGATTAACGGTGATGACGCCACGGCAAACAACAACGGCAAAACCACCGTTGACGGCAAGGATTCCACCGGTACGGAAATTGCTGGCAATAACGGGAAGGTGATTCAGGACGGCGATCTGGATGTCAGCGGCGGCGGTCa                                                                                                   >  2:150336/1‑214 (MQ=255)
                                                                                                                                                                                                                                                           tCCAGGTTGACGGCGACCAGGCGGTTGTTAACAACGAAGGCGAGAGCGCCATCACCAACGGTGGCACCGGCACGCAGATTAACGGTGATGACGCCACGGCAAACAACAACGGCAAAACCACCGTTGACGGCAAGGATTCCACCGGTACGGAAATTGCTGGCAATAACGGGAAGGTGATTCAGGACGGCGATCTGGATGTCAGCGGCGGCGGTCa                                                                                                   <  1:150336/214‑1 (MQ=255)
                                                                                                                                                                                                                                                           tCCAGGTCGACGGCGACAAGGCGATCGTCAACAACGAAGGCGAGAGCACCATCACCAACGGTGGCACCGGCACCCAGATTAACGGTGATGACGCCACGGCAAACAACAACGGCAAAACCACCGTTGACGGCAAGGATTCCACCGGTACGGAAATTGATGGCAATAACGGGAAGGTGATTCAGGACGGCGATCTGGATGTCAGCGGCGGCGGTCACGGTATTGATATCACCGGCGACAGCGCAACGGTGGATAACAAGGGCACCATGACCGTCACCGATCCGGAGTCCAt                        <  2:358998/289‑1 (MQ=255)
                                                                                                                                                                                                                                                           tCCAGATTGACGGTGACCAGGCGATCGTAAACAACGAAGGCGAGAGCACCATCACCAACGGTGGCACCGGCACCCAGATTAATGGTGATGACGCCACGGCAAACAACAACGGCAAAACCACCGTTGACGGCAAGGATTCCACCGGTACGGAAATTGCTGGAAATAACGGGAAGGTGATTCAGGACGGCGATCTGGATGTCAGCGGCGGCGGTCACGGTATTGATATCACCGGCGACAGCGCAACGGTGGATAACAAGGGCACCATGACCGTCACCGATCCGGAGTCCAt                        <  1:134124/289‑1 (MQ=255)
                                                                                                                                                                                                                                                                gTTGACGGCGACCAGGCGGTTGTTAACAACGACGGCGAGAGCGCCATCACCAACGGTGGCACCGGCACGCAGATTAACGGTGAGGACGCCACGGCAAACAACACCGGCAAAACCACCGTTGACGGCAAGGATTCCACCGGTACGGAAATTGCTGGCAATAACGGGAAGGTGATTCAGGACGGAGACCTGGATGTCAGAGGCGGCGGTCACGGTCTTGATATACCCGGCGACAGCGCAACGGTGGATAACAGAGGCACAATGCGCGTCACCGCTCCGGAGTCAAGCGGtg                   >  2:1329149/1‑288 (MQ=17)
                                                                                                                                                                                                                                                                gTTGACGGCGACCAGGCGGTTGTTAACAACGAAGGCGAGAGCGCCATCACCAACGGTGGCACCGGCACGCAGATTAACGGTGATGACGCCACCGCACACAACAACAGATAAACCACCGTTGACGGCACGGAATCTACCGGTACGGAAATTGCTGGCAATAACGGGAAGGGAATTCAGGACGGCGACATGGATGTCAGCGGCGGCGGACAAGGTATAGCTATCACCGGCGACAGCGCAACGGTGGATAACAAGGGGACCATGCACGGCACCGATCAGGCGTcctgcggca                   >  2:512388/1‑282 (MQ=17)
                                                                                                                                                                                                                                                                  tGACGGCGACCAGGCGGTTGTTAACAACGAAGGCGAGAGCGCCATCACCAACGGTGGCACCGGCACGCAGATTAACGGTGATGACGCCACGGCAAACAACAACGGCAAAACCACCGTTGACGGCAAGGATTCCACCGGTACGGAAATTGCTGGCAATAACGGGAAGGTGATTCAGGACGGCGATCTGGATGTCAGCGGCGGCGGTCACGGTATTGATATCACCGGCGACAGCGCAACGGTGGATAACAAGGGCACCATGACCGTCCCCGATCCGGAGTCCATCGGTAt                  >  2:1032413/1‑288 (MQ=255)
                                                                                                                                                                                                                                                                  ggACGGCGACCAGGCGGTTGTTAACAACGAAGGGGAGAGCGCCAGCACCAACGGTGGCACCGGCACGCAGATTAACGGTGATGACGCCACGGCAAACAACAACGGCAAAACCACCGTTGACGGCAAGGATTCCACCGGTACGGAAATTGCTGGCAATAACGGGAAGGTGATTCAGGACGGCGATCTGGATGTCAGCGGCGGCGGTCACGGTATTGAGATCACCGGCGAAGGGGCAACGGTGGATAACAAGGGGACCATGACCGTCACCGATCCGGAGTCCATCGGTATc                 <  2:464039/288‑1 (MQ=255)
                                                                                                                                                                                                                                                                   gACGGCGACCAGGCGGTTGTTAACAACGAAGGCGAGAGCGCCATCACCAACGGTGGCACCGGCACGCAGATTAACGGTGATGACGCCACGGCAAACAACAACGGCAAAACCACCGTTGACGGCAAGGATTCCACCGGTACGGAAATTGCTGGCAATAACGGGAAGGTGATTCAGGACGGCGACCTGAATGTAAGCGGCGGCGGGCACGGTATTGATATCACCGGCGACAGCGACACGGTGGAAAACAAGGGCAACATGACTGCCACCGATCCTGaacacatcgagatgc                >  2:905746/1‑275 (MQ=17)
                                                                                                                                                                                                                                                                   gACGGCGACCAGGCGGTTGTTAACAACGAAGGCGAGAGCGCCATCACCAACGGTGGCACCGGCACGCAGATTAACGGTGATGACGCCACGGCAAACAACAACGGCAAAACCACCGTTGACGGCAAGGATTCCACCGGTACGGAAATTGCGGGCAATAACGGGAAGGTGAATCAGGACGGCGACCTGACTGTCAGCGGCGGCGGTCACGGTATTGATATCACCGGCGACAGCGCCACGGTGGAAAACAAGGGCACCATGACTGTCACCGATCCGGAGTCCATCGGTATcc                >  2:794284/1‑289 (MQ=255)
                                                                                                                                                                                                                                                                   gACGGCGACCAGGCGGTTGTTAACAACGAAGGCGAGAGCGCCATCACCAACGGTGGCACCGGCACGCAGATTAACGGTGATGACGCAACGGCAAACAACAACGGCAAAACCACCGTTGACGGCAAAGATTCCACCGGTACGGAAATTGCTGGCAATAACGGGAAGGTGAATCAGGACGGCAGTCTGGATGTCAGAGGCGGCGCGCACGGTATTGATATCACCTGCGATAGAGCAACGGTGGAGCAGCAGGGCCCCATGGCAGTCACCGATCCGGGGTCCATCGCTAtac                >  2:250613/1‑287 (MQ=17)
                                                                                                                                                                                                                                                                   gACGGCGACCAGGCGGTTGTTAACAACGAAGGCGAGAGCGCCATCACCAACGGTGGCACCGGCACGCAGATTAACGGTGACGACGCCACGGCAAACAACAACGGCAAAACCACCGTTGACGGCAAGGATTCCACCGGTACGGAAATTGCTGGCAATAACGGGAAGGTGATTCAGGACGGCGATCTGGATGTCAGCGGCGGCGGTCACGGTATTGATATCACCGGCGACAGCGCAACGGTGGAGACCACGGGCACCATGACCGTCACCGATCCGGAGTCCATCGGTCTcc                >  2:1245190/1‑289 (MQ=255)
                                                                                                                                                                                                                                                                          aCCAGGCGGTTGTTAACAACGAAGGCGAGAGCGCCATCACCAACGGTGGCACCGGCACGCAGATTAACGGTGATGACGCCACGGGAAACAACAACGGCAACAACACCGTTGACGGCCAGGATTCCACCGGTACGGGAATTGCTGGCAATAACGGGACGGTCATTCAGGACGGCGATCTGGATGTCATCGGCGGCGGTCACGGTATTGATATCACCGGAGAAAGCGCAACGGGGGACAAAAAGGGCACCACGAACGCCACCGTTCCGGACTCCGTGGGGCTCCAGAtcg          >  2:831240/1‑286 (MQ=255)
                                                                                                                                                                                                                                                                                 ggTTGTTAACAACGAAGGCGAGAGCGCCATCACCAACGGTGGCACCGGCACGCAGATTAACGGTGATGACGCCACGGCAAACAACAACGGCAAAACCACCGTTGACGGCAAGGATTCCACCGGTACGGAAATTGCTGGCAATAACGGGAAGGTGATTCAGGACGGCGATCTGGATGTCAGCGGCGGCGGTCACGGTATTGATATCACCGGCGACAGCGCAACGGTGGATAACAAGGGCACCATGACCGTCACCGATCCGGAGTCCATCGGTATCCAGATTGACGGCGAc  <  1:1032413/289‑1 (MQ=255)
                                                                                                                                                                                                                                                                                 ggTTGTGAACAACGAAGGCGAGAGCTGCATCCCCAACGGTGGCACAGAGACGCAGATTAACGGTGATGACGCCACGGAAAACAACAACGGCAAAACCACCGTGGACGGAAAGTATTCCACCGGTACGGAAATTGCTGGCAATAACGGGAATGTGATTCAGGACGGCGATCTGGTTGTCAGCAGCGGCGGTCACGGTATTGATATCACCGGCGACAGCGCAACGGTGGATAACAAGGGCACCATGACCGTCACCGATCCGGAGTCCATCGGTATCCAGATTGACGGCGa   <  1:769929/288‑1 (MQ=14)
                                                                                                                                                                                                                                                                                       |                                                                                                                                                                                                                                                                                          
AGCACCATCACCAACGGTGGCACCGGCACCCAGATTAATGGTGATGACGCCACGGCAAACAACAACGGCAAAACCACCGTTGACGGCAAGGATTCCACCGGTACGGAAATCAACGGTAATAACGGAAAAGTTATTCAGGACGGCGATCTGGATG‑TCAGCGGCGGCGGTCACGGTATTGATATCACCGGCGACAGCGCAACGGTGGATAACAAGGGCACCATGACCGTCACCGATCCGGAGTCCATCGGTATCCAGGTTGACGGCGACCAGGCGGTTGTTAACAACGAAGGCGAGAGCGCCATCACCAACGGTGGCACCGGCACGCAGATTAACGGTGATGACGCCACGGCAAACAACAACGGCAAAACCACCGTTGACGGCAAGGATTCCACCGGTACGGAAATTGCTGGCAATAACGGGAAGGTGATTCAGGACGGCGATCTGGATGTCAGCGGCGGCGGTCACGGTATTGATATCACCGGCGACAGCGCAACGGTGGATAACAAGGGCACCATGACCGTCACCGATCCGGAGTCCATCGGTATCCAGATTGACGGCGAC  >  NC_000913/1466307‑1466867

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 9 ≤ ATCG/ATCG < 11 ≤ ATCG/ATCG < 28 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑

GATK/CNVnator alignment

N/A