Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A3 F17 I0 R1 155 84.1 1797446 90.9% 1633878 230.3

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation freq annotation gene description
RA NC_000913 3,686,538 T→C 18.3% S879G (AGC→GGC)  bcsC ← cellulose synthase subunit

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0009133,686,5380TC18.3% 187.4 / 7.5 99S879G (AGC→GGC) bcsCcellulose synthase subunit
Reads supporting (aligned to +/- strand):  ref base T (39/37);  new base C (6/15);  total (45/54)
Fisher's exact test for biased strand distribution p-value = 8.46e-02
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00

ACCTTTATCGTAGCTCAGACTTAGCCCCACACCGTCGGCACGTACGCCACCCCATTTTTTCCCGGTATTGCTCGGGGAGTC‑TTTTTG‑CCCACCAAAGGCCAGCAAAGAACTGGAGATGGG‑CCGACGGTGGGCG‑TTAACGGTGTAA‑CCCA‑GCGGCCCGATATCATCGCTGTAACTGATGCCGCCGACCACATCCACCACGTTGAAGCCCATCGGCGTGGTACCGATATCCCAGCTCCAGACGTCATTTCGCCAGCCGACCGCCACGCTGGCACCGGAATCCGACTGGCTGCGGTTGCCGCTACAGTCCTGTAATGTACAGGTGCCCCAGTTGT‑CATCCCATTTGCCATCGGCATTAGTGGAGAAACTGCCGACGTTCATATTGACGAAATCA‑CTGC‑GAAAGAACATCCGCCCGTCAGAATACGGCGCATCCACCTGCAACATGGTAGTGTGCGCTTTCAGATCGGAGTA  >  NC_000913/3686305‑3686772
                                                                                                                                                                                                                                               |                                                                                                                                                                                                                                             
aCCTTTATCGTAGCTCAGACTTAGCCCCACACCGTCGGCACGTACGCCACCCCATTTTTTCCCGGTATTGCTCGGGGAGTC‑TTTTTG‑CCCACCAAAGGCCAGCAAAGAACTGGAGATGGG‑CCGACGGTGGGCG‑TTAACGGTGTAA‑CCCA‑GCGGCCCGGTATCCTCGCTGTAACTGATGCCGCCGACCCCATCCACCACGTTGAAGCCCATCGGCCCGGGACCGATATCCCAGCTCCAg                                                                                                                                                                                                                                           >  2:420568/1‑238 (MQ=255)
aCCTTTATCGTAGCTCAGACTTAGCCCCACACCGTCGGCACGTACGCCACCCCATTTTTTCCCGGTATTGCTCGGGGAGTC‑TTTTTG‑CCCACCAAAGGCCAGCAAAGAACTGGAGATGGG‑CCGACGGTGGGCG‑TTAACGGTGTAA‑CCCA‑GCGGCCCGATATCATCCCTGTAACTGATGCCGCCGCCCCAATCCCCCACGTTGAGGCCCATCGGCGTGGTACCGACATCCCAGcccccca                                                                                                                                                                                                                                          >  1:495229/1‑236 (MQ=255)
  cTTTATCGTAGCTCAGACTTAGCCCCACACCGTCGGCACGTACGCCACCCCATTTTTTCCCGGTATTGCTCGGGGAGTC‑TTTTTG‑CCCACCAAAGGCCAGCAAAGAACTGGAGATGGG‑CCGACGGTGGGCG‑TTAACGGTGTAA‑CCCA‑GCGCCCCGATATCATCTCTGTAACCGATGCCGCCGACCACATCCACCACGTTGAAGCCCATCGGCGTGGTACCGATATCCCAGCCCCAGAc                                                                                                                                                                                                                                         >  1:656058/1‑238 (MQ=255)
           aGCTCAGACTTAGCCCCACACCGTCGGCACGTACGCCACCCCATTTTTTCCCGGTATTGCTCGGGGAGTC‑TTTTTG‑CCCACCAAAGGCCAGCAAAGAACTGGAGATGGG‑CCGACGGTGGGCG‑TTAACGGTGTAA‑CCCA‑GCGGCCCGATATCATCGCTGTAACTGATGCCGCCGACCACATCCACCACGTTGAAGCCCATCGGCGGGGTACCGATATCCCCGCCCCAGACGGCATTTcc                                                                                                                                                                                                                                >  1:804835/1‑237 (MQ=255)
               cAGACTTAGCCCCACACCGTCGGCACGTACGCCACCCCATTTTTTCCCGGTATTGCTCGGGGAGTC‑TTTTTG‑CCCACCAAAGGCCAGCAAAGAACTGGAGATGGG‑CCGACGGTGGGCG‑TTAACGGTGTAA‑CCCA‑GCGGCCCGATATCATCGCTGTAACTGATGCCCCCGACCACATCCACCCCGTTGAAGCCCATCGGCCTGGTCCCTCAATCCCAACCCCAACCGCCATTTCGcaac                                                                                                                                                                                                                            >  1:494028/1‑235 (MQ=255)
                      aGCCCCACCCCGGCGGCCCGTACGCCACCCCATTTTTTCCCGGTATTGCTCGGGGAGTC‑TTTTTG‑CCCACCAAAGGCCAGCAAAGAACTGGAGATGGG‑CCGACGGTGGGCG‑TTAACGGTGTAA‑CCCA‑GCGGCCCGATATCATCGCTGTAACTGATGCCGCCGACCACATCCACCACGTTGAAGCCCATCGGCGTGGTACCGATATCCCAGCTCCAGACGTCATTTCGCCAGCCGACCGc                                                                                                                                                                                                                    <  2:817307/239‑1 (MQ=255)
                       gCCCCACACCGTCGGCACGTACGCCACCCCATTTTTTCCCGGTATTGCTCGGGGAGTC‑TTTTTG‑CCCACCAAAGGCCAGCAAAGAACTGGAGATGGG‑CCGACGGTGGGCG‑TTAACGGTGTAA‑CCCA‑GCGGCCCGATATCATCGCTGTAACTGATGCCGCCGACCACATCCACCACGTTGAAGCCCATCGGCGGGGTACCGGTATCCCAGCTCCAAACGGCCATTCCCCAGCCGACCGc                                                                                                                                                                                                                    >  2:308153/1‑238 (MQ=255)
                            acacCGTCGGCACGTACGCCACCCCATTTTTTCCCGGTATTGCTCGGGGAGTC‑TTTTTG‑CCCACCAAAGGCCAGCAAAGAACTGGAGATGGG‑CCGACGGTGGGCG‑TTAACGGTGTAA‑CCCA‑GCGGCCCGATATCATCGCTGTAACTGATGCCGCCGACCACATCCACCACGTTGAAGCCCATCGGCGTGGTACCGAAATCCCAGCTCCAGACCCCATTTCTCCCGCCGACCGCCAcacc                                                                                                                                                                                                              >  1:514857/1‑236 (MQ=255)
                            acacCGTCGGCACGTACGCCACCCCATTTTTTCCCGGTATTGCTCGGGGAGTC‑TTTTTG‑CCCACCAAAGGCCAGCAAAGAACTGGAGATGGG‑CCGACGGTGGGCG‑TTAACGGTGTAA‑CCCA‑GCGGCCCGATATCATCGCTGTAACTGATGCCGCCGACCACATCCACCACGTTGAAGCCCATCGGCGTGGGACCGATATCCCAGCTCCAGACGTCATTTCGCCAGCCGACCGCCAc                                                                                                                                                                                                                 >  2:137056/1‑236 (MQ=255)
                            acacCGTCGGCACGTACGCCACCCCATTTTTTCCCGGTATTGCTCGAGGAGTC‑TTTTTG‑CCCACCAAAGGCCAGCAAAGAACTGGAGATGGG‑CCGACGGTGGGCG‑TTAACGGTGTAA‑CCCA‑GCGGCCCGATATCATCGCTGTAACTGATGCCGCCGACCACATCCACCACGTTGAAGCCCATCGGCGTGGTACCGAAATCCCAGCTCCAGACGCCATTTCTCCAGCCGACCGCCAc                                                                                                                                                                                                                 >  2:844871/1‑236 (MQ=255)
                                 gggggccagtgcGCCACCCCATGTTTTCCCGGTATTGCTCGGGGAGTC‑TTTTGG‑CCCACCAAAGGCCAGCAAAGAACTGGAGATGGG‑CCGACGGTGGGCG‑TTAACGGTGTAA‑CCCA‑GCGGCCCGATATCATCGCTGTAACTGATGCCGCCGACCACATCCACCACGTTGAAGCCCATCGGCGTGGTACCGATATCCCAGCTCCAGACGTCATTTCGCCAGCCGACCGCCACGCTGGCAc                                                                                                                                                                                                         <  2:563885/228‑1 (MQ=255)
                                  tCGGCACGTACGCCACCCCATTTTTTCCCGGTATTGCTCGGGGAGTC‑TTTTTG‑CCCACCAAAGGCCAGCATAGAACTGGAGATGGG‑CCGACGGTGGGCG‑TTAACGGTGTAA‑CCCA‑GCGGCCCGATATCATCGCTGTAACTGATGCCGCCGACCACCTCCACCCCGTTGAAACCCATCGGCGTGGTACCGCAATCCCACCCCCACAAGTCCTTTCCCCAGCCGAACCCCCCCCCGGCAcc                                                                                                                                                                                                        >  1:276461/1‑239 (MQ=255)
                                  tCGGCACGTACGCCACCCCATTTTTTCCCGGTATTGCTCGGGGAGTC‑TTTTTG‑CCCACCAAAGGCCAGCAAAGAACTGGAGATGGG‑CCGACGGTGGGCG‑TTAACGGTGTAA‑CCCA‑GCGGCCCGATATCATCGCTGTAACTGATGCCGCCGACCACATCCACCACGTTGAAGCCCATCGGCGTGGTACCGATATCCCAGCTCCAGACGCCATTTCGCCAGCCGACCGCCACGCTGGCAcc                                                                                                                                                                                                        >  2:133577/1‑239 (MQ=255)
                                  tCGGCACGTACGCCACCCCATTTTTTCCCGGTATTGCTCGGGGAGTC‑TTTTTG‑CCCACCAAAGGCCAGCAAAGAACTGGAGATGGG‑CCGACGGTGGGCG‑TTAACGGTGTAA‑CCCA‑GCGGCCCGATATCATCGCTGTAACTGATGCCGCCGACCACATCCACCACGTTGAAGCCCATCGGCGTGGGACCGCTATCCCAGCTCCAGACGTCATTTCGCCAGCCGACCGCCACCCCGGCAcc                                                                                                                                                                                                        >  2:789186/1‑239 (MQ=255)
                                  tCGGCACGTACGCCACCCCATTTTTTCCCGGTATTGCTCGGGGAGTC‑TTTTTG‑CCCACCAAAGGCCAGCAAAGAACTGGAGATGGG‑CCGACGGTGGGCG‑TTAACGGTGTAA‑CCCA‑GCGGCCCGATATCATCGCTGTAACTGATGCCGCCGACCACATCCACCACGTTGAAGCCCATCGGCGGGGTACCGCAATCCCAACCCCAGACGTCATTTTGCCAGCCGCCCGCCCCCCCGGCAcc                                                                                                                                                                                                        >  1:679798/1‑239 (MQ=255)
                                  tCGGCACGTACGCCACCCCATTTTTTCCCGGTATTGCTCGGGGAGTC‑TTTTTG‑CCCACCAAAGGCCAGCAAAGAACTGGAGATGGG‑CCGACGGTGGGCG‑TTAACGGGGTAA‑CCCA‑GCGGCCCGATATCATCGCTGTAACTGATGCCGCCGACCCAATCCACCACGTTGAAGCCCATCGGCGTAGTACCGAATTCCCAGCTCCAAACGTCATTTCCCCACCCGACcccccaccgggcacc                                                                                                                                                                                                        >  1:282587/1‑228 (MQ=255)
                                    ggCACGTACGCCACCCCATTTTTTCCCGGTATTGCTCGGGGAGTC‑TTTTTG‑CCCACCAAAGGCCAGCAAAGAACTGGAGATGGG‑CCGACGGTGGGCG‑TTAACGGTGTAA‑CCCA‑GCGGCCCGATATCATCGCTGTAACTGATGCCCCCGACCACATCCACCACGTTGAAGCCCATCGGCGTGGTACCCATATCCCAGCCCCAGACGCCATTTCGCCAGCCGACCGCCACCCTGGcccccg                                                                                                                                                                                                      >  2:838757/1‑237 (MQ=255)
                                                aCCCCATTTTTTCCCGGTATTGCTCGGGGAGTC‑TTTTTG‑CCCACCAAAGGCCAGCAAAGAACTGGAGATGGG‑CCGACGGTGGGCG‑TTAACGGTGTAA‑CCCA‑GCGGCCCGATATCATCGCTGTAACTGATGCCGCCGACCACATCCACCACGTTGAAGCCCATCGGCGTGGTACCGATATCCCAGCTCCAGACGTCATTTCGCCAGCCGACCGCCCCGCTGGCACCGGAATCCGCCTgg                                                                                                                                                                                           >  2:161949/1‑238 (MQ=255)
                                                 ccccATTTTTTCCCGGTATTGCTCGGGGAGTC‑TTTTTG‑CCCACCAAAGGCCAGCAAAGAACTGGAGATGGG‑CCGACGGTGGGCG‑TTAACGGTGTAA‑CCCA‑GCGGCCCGATATCATCGCTGTAACTGATGCCGCCGACCACATCCACCACGTTGAAGCCCATCGGCGGGGTACCGAAAACCCAGCTCCCAACGTCATTTCGCCACCCCACCCCCACCCGCGCACCGGAAACAGACGGGcc                                                                                                                                                                                         >  1:49319/1‑238 (MQ=255)
                                                           tCCCGGTATTGCTCGGGGAGTC‑TTTTTG‑CCCACCAAAGGCCAGCAAAGAACTGGAGATGGG‑CCGACGGTGGGCG‑TTAACGGTGTAA‑CCCA‑GCGGCCCGATATCATCGCTGTAACTGATGCCGCCGACCACATCCACCACGTTGAAGCCCATCGGCGTGGTACCGATATCCCAGCTCCAGACGTCATTTCGCCACCCGCCCGCCCCCCTGGCCCCGGAACCCGCCGGGCCGCGGTTGcc                                                                                                                                                                                >  1:677285/1‑238 (MQ=255)
                                                              gtgtgtttgcgtgggATTC‑TTTTTC‑CCCCACAAAGGCCAGCAAAGAACTCGGAAGTGG‑CCGCTGGGGGGCG‑TTAGCGGTGTAA‑CCCG‑GCGGCCCGATTTCATCGCTGTAACTGATGCCGCCGCCCCCACCCACCACGTTGACGCCCATCGGCGTTGTACCGATACCCCACCTCCATACTTCATTTCGCCAGCCGACCGCCACGCTGGCACCGGAATCCGACTGGCTGCGGTTGCCGCTa                                                                                                                                                                            <  1:564898/227‑1 (MQ=255)
                                                              cGGTTTTGC‑CGGGGGTTT‑TTTTTGCCCCACCAAGGGCCAGGAAAGAACTGGAGAGGGC‑CTGACGGTGGGCG‑TTAGCGGT‑TAA‑CCCAGGCGGCCCGATATCATCGCTGTACCAGATGCCGCCGACCCCATCCACCACGTTGAAGCCCATCGGCGTGGTACCGATACCCCAGCTCCAGCCGTCATTTCGCCAGCCGACCGCCACGCTGGCACCGGAATCCGACTGGCTGCGGTTGCCGCTa                                                                                                                                                                            <  1:362096/239‑1 (MQ=255)
                                                              cGGTATTGCTCGGGGATTC‑TTTTTG‑CCCACCAAAGGCCAGCAAAGAACTGGAGATGGG‑CCGACGGTGGGCG‑TTAACGGTGTAA‑CCCA‑GCGGCCCGATATCATCGCTGTAACTGATGCCGCCGACCACATCCACCACGTTGAAGCCCATCGGCGTGGTACCGATATCCCAGCTCCAGACGTCATTTCGCCAGCCGACCGCCACGCTGGCACCGGAATCCGACTGGCTGCGGTTGCCGCTa                                                                                                                                                                            <  2:855045/239‑1 (MQ=255)
                                                              cGGTATTGCTCGGGGAGTT‑TTTTTG‑CCCCCCAAAGGCCAGCAAAGAACTGGAGATGGG‑CCGACGGTGGGCG‑TTAACGGTTTAA‑CCCA‑GCGGCCCGATATCATCGCTGTAACTGATGCCGCCGACCCCATCCACCACGTTGAAGCCCATCGGCGTGGTACCGATATCCCAGCTCCAGACGTCATTTCGCCAGCCGACCGCCACGCTGGCACCGGAATCCGACTGGCTGCGGTTGCCGCTa                                                                                                                                                                            <  2:896915/239‑1 (MQ=255)
                                                              cGGTATTGCCCGGGGAGTC‑TTTTTG‑CCCACCAAGGGCCAGAAAAGAACTGGAGATGGG‑CCGACGGTGGGCG‑TTAACGGTGTAA‑CCCA‑GCGGCCCGATATCATCGCTGTAACTGATGCCGCCGACCACATCCACCACGTTGAAGCCCATCGGCGTGGTACCGATATCCCAGCTCCAGACGTCATTTCGCCAGCCGACCGCCACGCTGGCACCGGAATCCGACTGGCTGCGGTTGCCGCTa                                                                                                                                                                            <  2:739288/239‑1 (MQ=255)
                                                               cgtattggctggggggTCTTTTTTC‑CCCACCAAAGCCCAG‑AAAGAAACGGGGAGGGGCCCGGCGGTGGGCT‑TTAACGG‑GTAACCCCG‑GGGGCCCGATTACCTCGCTTTAACGGAGCCCGCCGACCACATCCACCACGTTGAAGCCCATCGGCGGGGTACCGATATCCCAGCTCCAGACGTCATTTCGCCAGCCGACCGCCACGCTGGCACCGGAATCCGACTGGCTGCGGTTGCCGCTa                                                                                                                                                                            <  1:275996/229‑1 (MQ=255)
                                                                 tATGGCTCGGGGAGTC‑TTTTTG‑CCCACCAAAGGCCAGCAAAGAACTGGAGATGGG‑CCGACGGTGGGCG‑TTAACGGTTTAA‑CCCA‑GCGGCCCGATATCATCGCTGTAACTGATGCCGCCGACCACATCCACCACGTTGAAGCCCATCGGCGTGGTACCGATATCCCAGCTCCAGACGTCATTTCGCCAGCCGACCGCCACGCTGGCACCGGAATCCGACTGGCTGCGGTTGCCGCTACa                                                                                                                                                                          <  2:348813/238‑1 (MQ=255)
                                                                   ttGCCCGGGGGGTC‑TTTTTG‑CCCACCAAAGGCCAGCAAAGAACTGGAGAGGGG‑CCGACGGGGGGCG‑TTAACGGTGTAA‑CCCA‑GCGGCCCGATATCATCGCTGTAACTGATGCCGCCGACCACATCCACCACGTTGAAGCCCATCGGCGTGGTACCGATATCCCAGCTCCAGACGTCATTTCGCCAGCCGACCGCCACGCTGGCACCGGAATCCGACTGGCTGCGGTTGCCGCTACAGTc                                                                                                                                                                       <  2:677285/239‑1 (MQ=255)
                                                                   gtGCTGGGGGGGTT‑TTTTTA‑CCCCCCAAGGGCCAGAAAAGAACGGGAGATGGC‑CCGAGGGGGGGCG‑TTAACGGTGTAA‑CCCA‑GCGGCCCGATATCATCGCTGTACCTGATGCCGCCGACCACATCCACCACGTTGAAGCCCATCGGCGTGGTACCGATATCCCAGCTCCAGACGTCATTTCGCCAGCCGACCGCCACGCTGGCACCGGAATCCGACTGGCTGCGGTTGCCGCTACAGTc                                                                                                                                                                       <  1:575583/238‑1 (MQ=255)
                                                                      ctgggggCGTC‑TTTTTC‑CCCACCAAAGCACACAAAAGCACTGGAGATGGG‑CCGCGGGGGGGCT‑TTAACGGTGGAA‑CCCC‑GCGCCCCGTAACCCTCGCTGAAACTGATGCCGCCGACCACATCCCCCACGTTGAAGCCCAGCGGCGTGGAACCGATATCCCAGCTCCAGACTTCATTTCGCCAGCCGACCGCCACGCTGGCACCGGAATCCGACTGGCTGCGGTTGCCGCTACAGTCCTg                                                                                                                                                                    <  1:257746/236‑1 (MQ=255)
                                                                      cTCGGGGAGTC‑TTTTTG‑CCCACCAAAGGCCAGCAAAGAACTGGAGATGGG‑CCGACGGTGGGCG‑TTAACGGTGTAA‑CCCA‑GCGGCCCGATATCATCGCTGTAACTGATGCCGCCGACCACATCCACCACGTTGAAGCCCATCGGCGTGGTACCGCTATCCCAGCTCCAGACGTCATTTCGCCAGCCGACCGCCCCCCTGGCCCCGGAATCCCACCTGCTGCGGTTTCCGCTACAGTCCTg                                                                                                                                                                    >  2:411342/1‑239 (MQ=255)
                                                                       tCGGGGATTC‑TTTTTG‑CCCACCAAAGGCCAGCAAAGAACTGGAGATGGG‑CCGACGGTGGGCG‑TTAACGGTGTAA‑CCCA‑GCGGCCCGATATCATCGCTGTAACTGATGCCGCCGACCACATCCACCACGTTGAAGCCCATCGGCGTGGTACCGATATCCCAGCTCCAGACGTCATTTCGCCAGCCGACCGCCACGCTGGCACCGGAATCCGACTGGCTGCGGTTGCCGCTACAGTCCTg                                                                                                                                                                    <  2:9234/238‑1 (MQ=255)
                                                                       tCGGGGAGTC‑TTTTTG‑CCCCCCAAAGGCCAGCAAAGAACTGGAGATGGG‑CCGACGGTGGGCG‑TTAACGGTGTAA‑CCCA‑GCGGCCCGATATCATCGCTGTAACTGATGCCGCCGACCACATCCACCACGTTGAAGCCCATCGGCGTGGTACCGATATCCCAGCTCCAGACGTCATTTCGCCAGCCGACCGCCACGCTGGCACCGGAATCCGACTGGCTGCGGTTGCCGCTACAGTCCTg                                                                                                                                                                    <  2:622400/238‑1 (MQ=255)
                                                                       gcgggggggcttttttG‑CCCACCAAGGGCGGGTAAAGATCGGGAGTTGGG‑CCGGCGGGCGGGT‑TTAACGGGGTAA‑CCCG‑GGGGTCCGTTATCTTCGCTGTAATTGCTCCCGCCGACCCCTTCCGCCACGTTGATGCCCACCGCCGGGGTACCGATATCCCAGCTCCGGACGTCATTTCGCCAGCCGACCGCCACGCTGGCACCGGAATCCGACTGGCTGCGGTTGCCGCTACAGTCCTg                                                                                                                                                                    <  1:664246/228‑1 (MQ=255)
                                                                       cccgggggttttttttC‑CCCCCCAAAGGCCAGCAAAGAACTGGAGATGGG‑CCGTCGGTGGGCG‑TTAACGGTATAA‑CCCA‑GCGGCCCGATATCATCGCGGTAACGGAGCCCGCCGACCACATCCACCACGTTGAAGCCCATCGGCGTGGTACCGATACCCCAGCTCCAGACGTCATTTCGCCAGCCGACCGCCACGCTGGCACCGGAATCCGACTGGCTGCGGTTGCCGCTACAGTCCTg                                                                                                                                                                    <  1:137056/228‑1 (MQ=255)
                                                                       ccGGGGGGTC‑TTTTTG‑CCCACCAAAGGCCAGCAAAGAACTGGAGATGGG‑CCGACGGTGGGCG‑TTAACGGTGTAA‑CCCA‑GCGGCCCGATATCATCGCTGTAACTGATGCCGCCGACCACATCCACCACGTTGAAGCCCATCGGCGTGGTACCGATATCCCAGCTCCAGACGTCATTTCGCCAGCCGACCGCCACGCTGGCACCGGAATCCGACTGGCTGCGGTTGCCGCTACAGTCCTg                                                                                                                                                                    <  2:97381/237‑1 (MQ=255)
                                                                        gggggAGTT‑TTTTTG‑CCCACCAAAGGCCAGCAAAGAACTGGAGATGGG‑CCGACGGTGGGCG‑TTAACGGTGTAA‑CCCA‑GCGGCCCGATATCATCGCTGTAACTGATGCCGCCGACCACATCCACCACGTTGAAGCCCATCGGCGTGGTACCGATATCCCAGCTCCAGACGTCATTTCGCCAGCCGACCGCCACGCTGGCACCGGAATCCGACTGGCTGCGGTTGCCGCTACAGTCCTGTa                                                                                                                                                                  <  2:77148/238‑1 (MQ=255)
                                                                           ggAGTC‑TTTTTG‑CCCACCAAAGGCCAGCAAAGAACTTGAGATGGG‑CCGACGGTGGGCG‑TTAACGGTGTAA‑CCCA‑GCGGCCCGATATCATCGCTGTAACTGATGCCGCCGACCACATCCACCACGTTGAAGCCCATCGGCGTGGTACCGATATCCCAGCTCCAGACGTCATTTCGCCAGCCGACCGCCACGCTGGCACCGGAATCCGACCGGCTGCGGTTGCCGCGACAGGCCTGTAATg                                                                                                                                                               >  2:455485/1‑239 (MQ=255)
                                                                           ggAGTC‑TTTTTG‑CCCACCAAAGGCCAGCAAAGAACTGGAGATGGG‑CCGACGGTGGGCG‑TTAACGGTGTAA‑CCCA‑GCGGCCCGATATCATCGCTGTAACTGATGCCGCCGACCACATCCACCACGTTGAAGCCCATCGGCGTGGTACCGATATCCCAGCTCCAGACGTCATTTCCCCAGCCGACCGCCCCCCTGGCACCGGAAACCGCCTGGCTGCGGTTGCCGCTACAGGCCTGAAATg                                                                                                                                                               >  2:377637/1‑239 (MQ=255)
                                                                               tC‑TTTTTG‑CCCACCAAAGGCCAGCAAAGAACTGGAGATGGG‑CCGACGGTGGGCG‑TTAACGGTGTAA‑CCCA‑GCGGCCCGATATCATCGCTGTAACTGATGCCGCCGACCACATCCACCACGTTGAAGCCCATCGGCGTGGTACCGATATCCCAGCTCCAGACGTCATTTCGCCAGCCGACCGCCACGCTGGCACCGGAATCCGACTGGCTGCGGTTGCCGCTACAGTCCTGTAATTTa                                                                                                                                                             >  2:575583/1‑237 (MQ=255)
                                                                                         cccACCAAAGGCCAGCAAAGAACTGGAGATGGG‑CCGACGGTGGGCG‑TTAACGGTGTAA‑CCCA‑GCGGCCCGATATCATCGCTGTAACTGATGCCGCCGACCACATCCACCACGTTGAAGCCCATCGGCGTGGGACCGATATCCCAGCTCCAGACGTCATTTCGCCAGCCGACCGCCACGCTGGCACCGGAATCCGCCTGGCTTCGGTTGCCCCTACAGTCCTGTAATGTACAGGTGcccc                                                                                                                                                   >  2:236445/1‑239 (MQ=255)
                                                                                           caccaAAGGCCAGCAAAGAACTGGAGATGGG‑CCGACGGTGGGCG‑TTAACGGTGTAA‑CCCA‑GCGGCCCGATATCATCGCTGTAACTGATGCCGCCGACCACATCCACCACGTTGAAGCCCATCGGCGTGGTACCGATATCCCAGCTCCAGACGTCATTTCGCCAGCCGACCGCCACCCTTGCCCCGGAATCCAACTGGCCCGGGTTGCCGCCACAGTCCTGTAATGGACAGGGGCCCCAg                                                                                                                                                 >  1:890416/1‑239 (MQ=255)
                                                                                                   gCCCGCAAAGAA‑TGGGGCTGGG‑CCCGGTGTGGGGGTTTAACGGTATCA‑CCCC‑GCGGCCCGATAACACCGCGGGAACTGACCCCCCCGCCCACCGCCCCCACGTTGAACCCCATCGGCGTGGTACCGATAACCCAGCCCCAGACGTCATTTCGCCAGCCGACCGCCACGCTGGCACCGGAATCCGACTGGCTGCGGTTGCCGCTACAGTCCTGTAATGTACAGGTGCCCCAGTTGT‑c                                                                                                                                           <  1:299902/236‑1 (MQ=255)
                                                                                                       ccAAAGAACGGGGGGTGGG‑CCGGCGGGGGGGC‑TTAACGGTGTAC‑CCCA‑GCGGCCAGATCTCCCCGCTGTAACTGGTGCCGCCGACCACACCCCCCACGTTGAAGCCCAGCGGGGTGGTACCGATATCCCAGCGCCAGACGTCATTTCGCCAGCCGACCGCCACGCTGGCACCGGAATCCGACTGGCTGCGGTTGCCGCTACAGTCCTGTAATGTACAGGTGCCCCAGTTGT‑CATCCCAt                                                                                                                                    <  1:844871/238‑1 (MQ=255)
                                                                                                            aagcgggagggggg‑CCCGCGGTGGGCG‑TTAACGGGGTAA‑CCCG‑GCGGCCCGATTACAGCGCTGTAACTGCGGCCCCCGACCACATCCCCCACGTTGAAGCCCATCGGCGTGGTACCGATATCCCAGCTCAAGACGTCATTCCGCCAGCCGACCGCCACGCTGGCACCGGAATCCGACTGGCTGCGGTTGCCGCTACAGTCCTGTAATGTACAGGTGCCCCAGTTGT‑CATCCCATTTGcc                                                                                                                               <  1:121961/228‑1 (MQ=255)
                                                                                                              ctgggggggggg‑CAGGCGGTGGGCG‑TTAACGGTGTAG‑CCCA‑GCGGCCCGATATCATCCCTGAAATGGAGGCCGCCGACCCCATCCCCCACGTTGAAGCCCTTCGGGGGGGTACCGATATCCCAGCCCCAACCGTCATTCCGCCAGCCGACCGCCACGCTGGCACCGGAATCCGACTGGCTGCGGTTGCCGCTACAGTCCTGTAATGTACAGGTGCCCCAGTTGT‑CATCCCATTTGcc                                                                                                                               <  1:161949/228‑1 (MQ=255)
                                                                                                                ctgggtgggggcccggggTGGGCT‑TTAACGGTTTAA‑CCCG‑GCGGCCCGATTGCCGCGCTGTAGCTGATGCCCCCGACCCCATCCACCACTTTGAACCCCAGCGGCGTGGTACCGATTTCCCAGCCCCAGACGTCATTTCGCCAGCCGACCGCCACGCTGGCACCGGAATCCGACTGGCTGCGGTTGCCGCTACAGTCCTGTAATGTACAGGTGCCCCAGTTGT‑CATCCCATTTGCCATc                                                                                                                            <  1:883121/223‑1 (MQ=255)
                                                                                                                cggggggtgggcgcagggggggCG‑TAACCGGTGAAC‑CCCA‑GCGGCCCTAACTCACCGCTGTAACTGATGCCGCCGCCCCCCTCCCCCACGTGGAAGCCCATCGGCGGGGTACCGATACCCCAGCTCCAGAGGTCATTTCGCCAGCCGACCGCCACGCTGGCACCGGAATCCGACTGGCTGCGGTTGCCGCTACAGTCCTGTAATGTACAGGTGCCCCAGTTGT‑CATCCCATTTGCCATc                                                                                                                            <  1:592336/220‑1 (MQ=255)
                                                                                                                  gagaTGGG‑CCGACGGTGGGCG‑TTAACGGTTTAA‑CCCA‑GCGGCCCGATATCATCGCTGTAACTGATGCCGCCGCCCACATCCACCACGTTGAAGCCCATCGGCGTGGTACCGATATCCCAGCCCCAGACGTCATTTCGCCAGCCGACCGCCACGCTGGCACCGGAATCCGACTGGCTGCGGTTGCCGCTACAGTCCTGTAATGTACAGGTGCCCCAGTTGT‑CATCCCATTTGCCATCgg                                                                                                                          <  2:420604/238‑1 (MQ=255)
                                                                                                                  gagaTGGG‑CCGACGGTGGGCG‑TTAACGGTGTAA‑CCCA‑GCGGCCCGATATCATCGCTGTAACTGATGCCGCCGACCACATCCACCACGTTGAAGCCCATCGGCGTGGTACCGATATCCCAGCTCCAGACGTCATTTCGCCAGCCGACCGCCACGCTGGCACCGGAATCCGACTGGCTGCGGTTGCCCCTACAGTCCTGTAATGTACAGGTGCCCCAGTTGT‑CATCCCATTTGCCATCGGc                                                                                                                         >  2:274759/1‑239 (MQ=255)
                                                                                                                      tGGG‑CCGACGGTGGGCT‑TTAACGGTTTAA‑CCCA‑GCGGCCCGATTCTCTCGTTGTAACTGATGCCGCCGACCACATCCCCCCCGTTGAAGCCCATCGGCGTGGTACCGATATCCCAGCTCCAGCCGTCATTTCGCCAGCCGACCGCCACGCTGGCACCGGAATCCGACTGGCTGCGGTTGCCGCTACAGTCCTGTAATGTACAGGTGCCCCAGTTGT‑CATCCCATTTGCCATCGGCAtt                                                                                                                      <  2:268355/238‑1 (MQ=255)
                                                                                                                       ggg‑CCGACGGTGGGCG‑TTAACGGTGTAA‑CCCA‑GCGGCCCGATATCATCGCTGTAACTGATGCCGCCGACCACATCCACCACGTTGAAGCCCATCGGCGTGGTACCGATATCCCAGCTCCAGACGTCATTTCGCCAGCCGACCGCCACGCTGGCACCGGAATCCGACTGGCTGCGGTTGCCGCTACAGTc                                                                                                                                                                       >  2:623831/1‑189 (MQ=255)
                                                                                                                       ggg‑CCGACGGTGGGCG‑TTAACGGTGTAA‑CCCA‑GCGGCCCGATATCATCGCTGTAACTGATGCCGCCGACCACATCCACCACGTTGAAGCCCATCGGCGTGGTACCGATATCCCAGCTCCAGACGTCATTTCGCCAGCCGACCGCCACGCTGGCACCGGAATCCGACTGGCTGCGGTTGCCGCTACAGTc                                                                                                                                                                       <  1:623831/189‑1 (MQ=255)
                                                                                                                         g‑ccgccGGTGGGCT‑TTAACGGTGTAA‑CCCA‑GCGGCCCGATATCATCGCTGTAACTGATGCCGCCGACCACATCCACCACGTTGAAGCCCATCGGCGTGGTACCGATATCCCAGCTCCAGACGTCATTTCGCCAGCCGACCGCCACGCTGGCACCGGAATCCGACTGGCTGCGGTTGCCGCTACAGTCCTGTAATGTACAGGTGCCCCAGTTGT‑CATCCCATTTGCCATCGGCATTAGt                                                                                                                   <  2:804835/238‑1 (MQ=255)
                                                                                                                         g‑CCGACGGTGGGCG‑TTAACGGTGTAA‑CCCA‑GCGGCCCGATATCATCGCTGTAACTGATGCCGCCGACCACATCCACCACGTTGAAGCCCATCGGCGTGGTACCGATATCCCAGCTCCAGACGTCATTTCGCCAGCCGACCGCCACGCTGGCACCGGAATCCGACTGGCTGCGGTTGCCGCTCCAGTCCTGTAATGTACAGGGGGCCCAGTTGT‑CATCCCATTTGCCATCGGCATTAGTg                                                                                                                  >  2:741375/1‑239 (MQ=255)
                                                                                                                                      tg‑TTAAGGGTTTAC‑CCCA‑CCGGCCCTATTGCAGCCGTGAACCGGACTCCCCCGACCACGTCCCCCCTGTTGAAGCCCATCGGCGTGGTACCGATATCCCAGCCCCAGGCGTCATTTCGCCAGCCGACCGCCACGCTGGCACCGGAATCCGACTGGCTGCGGTTGCCGCTACAGTCCTGTAATGTACAGGTGCCCCAGTTGT‑CATCCCATTTGCCATCGGCATTAGTGGAGAAACTGcc                                                                                                       <  1:579342/237‑1 (MQ=255)
                                                                                                                                      cG‑TTAACGGTGTAA‑CCCA‑GCGGCCAGATATCAGCGCTGTAACTGATCCCGCCGACCACATCCACCACGTTGAAGCCCATCGGCGGGGTACCGATATCCCAGCTCCAGACGTCATTTCGCCAGCCGACCGCCACGCTGGCACCGGAATCCGACTGGCTGCGGTTGCCGCTACAGTCCTGTAATGTACAGGTGCCCCAGTTGT‑CATCCCATTTGCCATCGGCATTAGTGGAGAAACTGcc                                                                                                       <  2:625760/238‑1 (MQ=255)
                                                                                                                                           aaCGGTGTAA‑CCCA‑GCGGCCCGATATCATCGCTGTAACTGATGCCGCCGACCACATCCACCACGTTGAAGCCCATCGGCGTGGTACCGATATCCCAGCTCCAGACGTCATTTCGCCAGCCGACCGCCACGCTGGCACCGGAATCCGACTGGCTGCGGTTGCCGCTACAGTCCTGTAATGTACAGGTGCCCCAGTTGT‑CATCCCATTTGCCATCGGCATTAGTGGAGAAACTGCCGACGt                                                                                                  >  2:33749/1‑239 (MQ=255)
                                                                                                                                                tgtAA‑CCCA‑GCGGCCCGATATCATCGCTGTAACTGATGCCGCCGACCACATCCACCACGTTGAAGCCCATCGGCGTGGTACCGATATCCCAGCTCCCGACGTCATTTCGCCAGCCGACCGCCACTCTGGCACCGGAATCCGCATGGCTGCGGTTGCCCCTCCAGTCCTGTAAGGTACAAGGGCCCCCGTTGT‑CACCCCATTTGCCATCGGCATTAATGGAAAAAATACCgccctccaat                                                                                             >  1:837041/1‑230 (MQ=255)
                                                                                                                                                 gtAA‑CCCA‑GCGGCCCGATATCATCGCTGTAACTGATGCCGCCGACCACATCCACCACGTTGAAGCCCATCGGCGTGGTACCGATATCCCAGCTCCAGACGTCATTTCGCCAGCCGACCGCCACGCTGGCACCGGAATCCGACTGGCTGCGGTTGCCGCTACAGTc                                                                                                                                                                       >  2:570645/1‑165 (MQ=255)
                                                                                                                                                 gtAA‑CCCA‑GCGGCCCGATATCATCGCTGTAACTGATGCCGCCGACCACATCCACCACGTTGAAGCCCATCAGCGTGGTACCGATATCCCAGCTCCAGACGTCATTTCGCCAGCCGACCGCCACGCTGGCACCGGAAACCGACTGGCTGCGGTTGCCGCTACCGTCCTGTAATGTACAGGGGCCCCAGTTGT‑CATCCCATTTGGCATCGGCATTTGGGGAGAAACAGCCGACGTTCaaat                                                                                            >  1:350494/1‑239 (MQ=255)
                                                                                                                                                  tAA‑CCCA‑GCGGCCCGATATCATCGCTGTAACTGATGCCGCCGACCACATCCACCACGTTGAAGCCCATCGGCGTGGTACCGATATCCCAGCTCCAGACGTCATTTCGCCAGCCGACCGCCACGCTGGCACCGGAATCCGACTGGCTGCGGTTGCCGCTACAGTCCTGTAATGTACAGGTGCCCCAGtt                                                                                                                                               >  2:321196/1‑188 (MQ=255)
                                                                                                                                                            cGGCCCGATATCATCGCTGTAACTGATGCCGCCGACCACATCCACCACGTTGAAGCCCATCGGCGTGGTACCGATATCCCAGCTCCAGACGTCATTTCGCCAGCCGACCGCCACGCTGGCACCGGAATCCGACTGGCTGCGGTTGCCGCTACAGTCCTGTAATGTACAGGTGCCCCAGTTGT‑CATCCCATTTGCCATCGGCCTTAGTGGGGAAACTGCCGCCGTTCATATTGCCGAAAt                                                                                   >  2:368410/1‑239 (MQ=255)
                                                                                                                                                            cGGCCCGATATCATCGCTGTAACTGATGCCGCCGACCACATCCACCACGTTGAAGCCCATCGGCGTGGTACCGATATCCCAGCTCCACACGTCATTTCGCCAGCCGACCGCCACGCTGGCACCGGAATCCGACGGGCTGCGGTTGCCGCTACCGTCCTGTAATGTACAGGGGCCCCCGTTGT‑CCTCCCACTGACCATCGGCAGTAGGGGGGAAACTGCCGCCGGTCAAATTTAAGaaac                                                                                   >  1:499487/1‑238 (MQ=255)
                                                                                                                                                            cGGCCCGATATCATCGCTGTAACTGATGCCGCCGACCACATCCACCACGTTGAAGCCCATCGGCGTGGTACCGATATCCCAGCTCCAAACGTCATTTCGCCAGCCGACCGCCACCCTGGCCCCGGCATCCGACTGGCGGCGGTTTCCCCCCCCGTCCCGTAACGGACAGG‑GCCCCCGGTGTCCCTCCCATTTGCCCACGGCATTAGCGGGGAAACTGCCCACGTTcgaattaccgcaac                                                                                   >  1:2095/1‑226 (MQ=255)
                                                                                                                                                                    attcatcCCTGTAACTGATGCCGCCGACCCCACCCACCACGTTGAAGCCCATCGGCGTGGTACCGATACCCCAGCTCCAGCCGTCATTTCGCCAGCCGACCGCCACGCTGGCACCGGAATCCGACTGGCTGCGGTTGCCGCTACAGTCCTGTAATGTACAGGTGCCCCAGTTGT‑CATCCCATTTGCCATCGGCATTAGTGGAGAAACTGCCGACGTTCATATTGACGAAATCA‑CTGC‑g                                                                          <  2:494028/236‑1 (MQ=255)
                                                                                                                                                                              gTAACTGATGCCGCCGACCACATCCACCACGTTGAAGCCCATCGGCGTGGTACCGATATCCCAGCTCCAGACGTCATTTCGCCAGCCGACCGCCACGCTGGCACCGGAATCCGACTGGCTGCGGTTGCCGCTACAGTCCTGTAATGTACAGGTGCCCCAGTTGT‑CATCCCATTTGCCATCGGCATTAGTGGAGAAACTGCCGACGTTCATATTGACGAAATCA‑CTGC‑GAAAGAACATc                                                                >  2:614404/1‑238 (MQ=255)
                                                                                                                                                                               gaaCTGATGCCGCCGACCACAACCCCCCCGTTGAAGCCAGTCGGCGTGGTACGGATATCCCAGCTCCAGACGTCATTTCGCCAGCCGACCGCCACGCTGGCACCGGAATCCGACTGGCTGCGGTTGCCGCTACAGTCCTGTAATGTACAGGTGCCCCAGTTGT‑CATCCCATTTGCCATCGGCATTAGTGGAGAAACTGCCGACGTTCATATTGACGAAATCA‑CTGC‑GAAAGAACATCCg                                                              <  2:875741/238‑1 (MQ=255)
                                                                                                                                                                                 acgacacccgccgCCCCCACCCCCCCCGTTGAGCCCCAGCGGCGGGCAACCGATAGCCCAGCCCACGAGCTCATTTCGTCAGCCGACCGCCACGCTGGCCCCGGAATCCGACTGGCTGCGGTTGCCGCTACAGTCCTGTAATGTACAGGTGCCCCAGTTGT‑CATCCCAGTTGCCATCGGCATTAGTGGAGAAACTGCCGACGTTCATATTGACGAAATCA‑CTGC‑GAAAGAACATCCGcc                                                            <  1:350105/232‑1 (MQ=255)
                                                                                                                                                                                 aCTGATGCCGCCGACCACATCCACCACGTTGAAGCCCATCGGCGTGGTACCGATATCCCAGCTCCAGACGTCATTTCGCCAGCCGACCGCCACGCTGGCACCGGAATCCGACTGGCTGCGGTTGCCGCTCCAGTCCTGTAATGTACAGGTGCCCCAGTTGT‑CATCCCATTTGCCATCGGCATTAGTGGAGAAACTGCCGAGGTTCCTATTTACGAAATAA‑CTCC‑GAAAAAACAAcccc                                                             >  1:63517/1‑236 (MQ=255)
                                                                                                                                                                                    ttaccccccgCCCCCATCCACCACGTTGAAGCCCAACGGCGTGGTCCCGATACCCCAGCTCCAGACGTCATTTCGCCAGCCGACCGCCACGCTGGCACCGGAATCCGACTGGCTGCGGTTGCCGCTACAGTCCTGTAATGTACAGGTGCCCCAGTTGT‑CATCCCATTTGCCATCGGCATTAGTGGAGAAACTGCCGACGTTCATATTGACGAAATCA‑CTGC‑GAAAGAACATCCGCCCGt                                                         <  2:514857/232‑1 (MQ=255)
                                                                                                                                                                                    gATGCCGCCGACCACATCCACCACGTTGAAGCCCATCGGCGTGGTACCGATATCCCAGCTCCAGACGTCATTTCGCCAGCCGACCGCCACGCTGGCACCGGAATCCGACTGGCTGCGGTTGCCGCTACAGTCCTGTAATGTACAGGTGCCCCAGTTGT‑CATCCCATTTGCCATCGGCATTAGTGGAGAAACTGCCGACGTTCATATTTACGAAATCA‑CTGC‑GAAAGAACATCCGCCCGt                                                         >  2:262757/1‑239 (MQ=255)
                                                                                                                                                                                     aTGCCGCCGACCACATCCACCACGTTGAAGCCCATCGGCGTGGTACCGATATCCCAGCTCCAGACGTCATTTCGCCAGCCGACCGCCACGCTGGCACCGGAATCCGACTGGCTGCGGTTGCCGCTACAGTCCTGTAATGTACAGGTGCCCCAGTTGT‑CATCCCATTTGCCATCGGCATTAGTGGAGAAACTGCCGACGTTCATATTGACGAAATCA‑CTCC‑GACAGacactccaccagcc                                                        >  2:96/1‑226 (MQ=255)
                                                                                                                                                                                       gccgccGACCACATCCACCACGTTGAAGCCCATCGGCGTGGTACCGATATCCCAGCTCCAGACGTCATTTCGCCAGCCGACCGCCACGCTGGCACCGGAATCCGACTGGCTGCGGTTGCCGCTACAGTCCTGTAATGTACAGGTGCCCCAGTTGT‑CATCCCATTTGCCATCGGCATTAGTGGAGAAACTGCCGACGTTCATATTGACGAAATCA‑CTGC‑GAAAGAAAATCCGCCCGTCAg                                                      >  2:522514/1‑239 (MQ=255)
                                                                                                                                                                                         ccccgacccacgcccccacGTTGAAGCCCATCGGCGTGGTACCGATATCCCAGCTCCAGACGTCATTTCGCCAGCCGACCGCCACGCTGGCACCGGAATCCGACTGGCTGCGGTTGCCGCTACAGTCCTGTAATGTACAGGTGCCCCAGTTGT‑CATCCCATTTGCCATCGGCATTAGTGGAGAAACTGCCGACGTTCATATTGACGAAATCA‑CTGC‑GAAAGAACATCCGCCCGTCAGaa                                                    <  2:56104/224‑1 (MQ=255)
                                                                                                                                                                                             gACCACATCCACCACGTTGAAGCCCATCGGCGTGGTACCGATATCCCAGCTCCAGACGTCATTTCGCCAGCCGACCGCCACGCTGGCACCGGAATCCGACTGGCTGCGGTTGCCGCTACAGTCCTGTAATGTACAGGGCCCCCAGTTGT‑CATCCCCTTTGCCATCGGCATTATGGGGGAAAAGGCCGCCGTCCATATTGACGAAA‑CA‑CCGCGGAAAGAAAAACCCCCCgcacacaaaag                                                >  1:69798/1‑229 (MQ=255)
                                                                                                                                                                                             accccccccccccctgTTGACGCCCGTGGGGGTGGCACCAATACCCCAGCCCCCGCGGTCTCTTCGCCGGCCGCCCGCCGCGCTGGCACCGGAATCCGACGGGCTGCGGTTGCCGCTACAGTCCTTTAATGTACAGGTGCCCCAGTTGT‑CATCCCATTTGCCATCGGCATTAGTGGAGAAACTGCCGACGTTCATATTGACGAAATCA‑CTGC‑GAAAGAACATCCGCCCGTCAGAATACg                                                <  1:236445/224‑1 (MQ=255)
                                                                                                                                                                                                   ccccccccccttgcaccccacgggCGTGTTACCTATGCCCCAGCCCCCGCGGTTAGTCCCCCAGCCGCCCGCCACGTTGGCACCGGAATCCGACTGGCTGCGGTTGCCGCTACAGTCCTGTAATGTACAGGTGCCCCAGTTGT‑CATCCCATTTGCCATCGGCATTAGTGGAGAAACTGCCGACGTTC‑TATTGACGAAATCA‑CTGC‑GAAAGAACATCCGCCCGTCAGAATACGGCGCATc                                         <  1:377637/217‑1 (MQ=255)
                                                                                                                                                                                                   aTCCACCACGTTGAAGCCCACCGGCGTGGTACCGAAAACCCGGCTCCAGACGTCTTTTCGCCAGCCGACCGCCACGCTGGCACCGGAATCCGACTGGCTGCGGTTGCCGGTACAGTCCTGTAATGTACAGGTGCCCCAGTTGT‑CATCCCATTTGCCATCGGCATTAGTGGAGAAACTGCCGACGTTCATATTGACGAAATCA‑CTGC‑GAAAGAACATCCGCCCGTCAGAATACGGCGCAt                                          <  2:2095/239‑1 (MQ=255)
                                                                                                                                                                                                        ccccGTTGAAGCCCATCGGCGTGGTACCGATACCCCAGCTCCAGACGTCATTTCCCCAGCCGACCGCCACGCTGGCACCGGAATCCGACTGGCTGCGGTTGCCGCTACAGTCCTGTAATGTACAGGTGCCCCAGTTGT‑CATCCCATTTGCCATCGGCATTAGTGGAGAAACTGCCGACGTTCATATTGACGAAATCA‑CTGC‑GAAAGAACATCCGCCCGTCAGAATACGGCGCATCCAcc                                     <  2:679798/236‑1 (MQ=255)
                                                                                                                                                                                                        ccccGTTAAAGCCCCTCGGCGTGGTCCCGATACCCAAGCCCCAGGCCTCATTTCGCCAGCCGCCCGCCACGCTGGCACCGGAATCCGACTGGCTGCGGTTGCCGCTACAGTCCTGTAATGTACAGGTGCCCCAGTTGT‑CATCCCATTTGCCATCGGCATTAGTGGAGAAACTGCCGACGTTCATATTGACGAAATCA‑CTGC‑GAAAGAACATCCGCCCGTCAGAATACGGCGCATCCAcc                                     <  2:111479/236‑1 (MQ=255)
                                                                                                                                                                                                        ccacTTTGAAGCCCAACGGCGGGGGACCGATCGCCCAGCCCCGGACCTCATTCCGCCAGCCGACCGCCACGCTGGCACCGGAATCCGACTGGCTGCGGTTGCCGCTACAGTCCTGTAATGTACAGGTGCCCCAGTTGT‑CATCCCATTTGCCAGCGGCATTAGTGGAGAAACTGCCGACGTTCATATTGACGAAATCA‑CTGC‑GAAAGAACATCCGCCCGTCAGAATACGGCGCATCCAcc                                     <  2:781133/239‑1 (MQ=255)
                                                                                                                                                                                                        cagcGTTGAAGCCCATCGGCGTGGTACCGATAGCCCAGCTCCAGACGTCAGTTGGCCAGCCGACCGCCACGCTGGCACCGGAATCCGACTGGCTGCGGTTGCCGCTACAGTCCTGTAATGTACAGGTGCCCCAGTTGT‑CATCCCATTTGCCATCGGCATTAGTGGAGAAACTGCCGACGTTCATATTGACGAAATCA‑CTGC‑GAAAGAACATCCGCCCGTCAGAATACGGCGCATCCAcc                                     <  2:453969/236‑1 (MQ=255)
                                                                                                                                                                                                          ccgttaatcccccccGGTGTGGTCCCGATTCCCCACCCCCCGCCGTAATTTCGCAGGCCGACCGCCGCGCTTGCACCGAAATCCGACTGGCTGCGGTTGCCGCTACAGTCCTGTAATGTACAGGTGCCCCAGTTGT‑CATCCCATTTGCCATCGGCATTAGTGGAGAAACTGCCGACGTTCATATTGACGAAATCA‑CTGC‑GAAAGAACATCCGCCCGTCAGAATACGGCGCATCCACCTg                                   <  1:411342/225‑1 (MQ=255)
                                                                                                                                                                                                          ccgtgaaaccccATCGGAGGGGTACCGATACCCCAGCCCCAGACGTCATTCCGCCAGCCGCCCGCCACGCTGGCACCGGAATCCGACTGGCTGCGGTTGCCGCTACAGTCCTGTAATGTACAGGTGCCCCAGTTGT‑CATCCCATTTGCCATCGGCATTAGTGGAGAAACTGCCGACGTTCATATTGACGAAATCA‑CTGC‑GAAAGAACATCCGCCCGTCAGAATACGGCGCATCCACCTg                                   <  2:758474/230‑1 (MQ=255)
                                                                                                                                                                                                          ccGTTGAATCCCATCGGCGTGTGACCGATATCCCAGCCCCAGCCGTCATTTCGCCCGCCGACCGCCACCCTGGCACCGGAATCCGACTGGCTGCCGTTGCCGCTACAGTCCTGTAATGTACAGGTGCCCCAGTTGT‑CATCCCATTTGCCATCGGCATTAGTGGAGAAACTGCCGACGTTCATATTGACGAAATCA‑CTGC‑GAAAGAACATCCGCCCGTCAGAATACGGCGCATCCACCTg                                   <  2:186512/238‑1 (MQ=255)
                                                                                                                                                                                                          aggaacaggCCCATCGGCGTGGTACCGATTTCCCAGCTCCAGACGTCATTTCGCCAGCCGACCGCCACGCTGGCACCGGAATCCGACTGGCTGCGGTTGCCGCTACAGTCCTGTAATGTACAGGTGCCCCAGTTGT‑CATCCCATTTGCCATCGGCATTAGTGGAGAAACTGCCGACGTTCATATTGACGAAATCA‑CTGC‑GAAAGAACATCCGCCCGTCAGAATACGGCGCATCCACCTg                                   <  2:867198/231‑1 (MQ=255)
                                                                                                                                                                                                          acgggtaacccaatgggtgTGGAACGGAGATCCCGGTCCCAGACGTGTTTTCGCCAGCCACCCGCCACGCTGGCACCGGAATCCGACTGGCTGCGGTTGCCGCTACAGTCCTGTAATGTACAGGTGCCCCAGTTGT‑CATCCCATTTGCCATCGGCATTAGTGGAGAAACTGCCGACGTTCATATTGACGAAATCA‑CTGC‑GAAAGAACAACCGCCCGTCAGAATACGGCGCATCCACCTg                                   <  2:129648/221‑1 (MQ=255)
                                                                                                                                                                                                          acGTTGAAGCCCATCGGCGTGGTACCGATATCCCAGCTCCAGACGTCATTTCGCCAGCCGACCGCCACGCTGGCACCGGAATCCGACTGGCTGCGGTTGCCGCTACAGTCCTGTAATGTACAGGTGCCCCAGTTGT‑CATCCCATTTGCCATCGGCATTAGTGGAGAAACTGCCGACGTTCATATTGACGAAATCA‑CTGC‑GAAAGAACATCCGCCCGTCAGAATACGGCGCATCCACCTg                                   <  2:63517/239‑1 (MQ=255)
                                                                                                                                                                                                          acGTTGAAGCCCATCGGCGTAGTCCCGATATCCCAGCTCCAGACGTCATTTCGCCAGCCGACCGCCACGCTGGCACCGGAATCCGACTGGCTGCGGTTGCCGCTACAGTCCTGTAATGTACAGGTGCCCCAGTTGT‑CATCCCATTTGCCATCGGCATTAGTGGAGAAACTGCCGACGTTCATATTGACGAAATCA‑CTGC‑GAAAGAACATCCGCCCGTCAGAATACGGCGCATCCACCTg                                   <  2:282587/239‑1 (MQ=255)
                                                                                                                                                                                                           tggtggtgtgggtCGGGGTGGCCCCGATCTCCCGGCCCCAGCCGTCTTTCCGCCAGCCGACCGCCACGCGGGCACCGGAATCCGACTGGCTGCGGTTGCCGCTACAGTCCTGTAATGTACAGGTGCCCCAGTTGT‑CATCCCATTTGCCATCGGCATTAGTGGAGAAACTGCCGACGTTCATATTGACGAAATCA‑CTGC‑GAAAGAACATCCGCCCGTCAGAATACGGCGCATCCACCTg                                   <  1:294038/226‑1 (MQ=255)
                                                                                                                                                                                                           cGTTGAAGCCCATCGGCGTGGTCCCGATATCCCAGCTCCAGACCTCATTTCGCCAGCCGACCGCCACGCTGGCACCGGAATCCGACTGGCTGCGGTTGCCGCTACAGTCCTGTAATGTACAGGTGCCCCAGTTGT‑CATCCCATTTGCCATCGGCATTAGTGGAGAAACTGCCGACGTTCATATTGACGAAATCA‑CTGC‑GAAAGAACATCCGCCCGTCAGAATACGGCGCATCCACCTGc                                  <  2:890416/239‑1 (MQ=255)
                                                                                                                                                                                                             ttcaaGCCCATCGGCGTGGTACCGATATCCCAGCTCCAGACGTCATTTCGCCAGCCGACCGCCACGCTGGCACCGGAATCCGACTGGCTGCGGTTGCCGCCACAGTCCTGTAATGTACAGGTGCCCCAGTTGT‑CATCCCATTTGCCATCGGGTTTAGTGGGAAAACTGCCAACGGTCAAATTAGCGAAATAACCTGC‑AAAAGAA‑AACCACCCCACCAAAAACGGAGCAACCACCCGCaa                                >  1:390501/4‑239 (MQ=255)
                                                                                                                                                                                                                     ggtCGGCGTGGTACCGATATCCCAGCTCCAGACGTCATTTCGCCAGCCGACCGCCACGCTGGCACCGGAATCCGACTGGCTGCGGTTGCCGCTACAGTCCTGTAATGTACAGGTGCCCCAGTTGT‑CATCCCATTTGCCATCGGCATTAGTGGAGAAACTGCCGACGTTCATATTGACGAAATCA‑CTGC‑GAAAGAACAACCGCCCGTCAGAATACGGCGCATCCACCAGCAACATggaa                         >  2:294038/3‑236 (MQ=255)
                                                                                                                                                                                                                      aTCGGCGTGGTACCGATATCCCAGCTCCAGACGTCATTTCGCCAGCCGACCGCCACGCTGGCACCGGAATCCGACTGGCTGCGGTTGCCGCTACAGTCCTGTAATGTACAGGTGCCCCAGTTGT‑CATCCCATTTGCCATCGGCATTAGTGGAGCAACTGCCGACGTTCATATTGACGAAATCA‑CTGC‑GAAAGAACATCCGCCCGTCAGAATACGGGGCATCCACCTGCAACATGGTatt                       >  2:178494/1‑237 (MQ=255)
                                                                                                                                                                                                                           cgttgccccGATAACCCACCGCCAGTCGGCATTTCGCCCCCCCTCCGCCCCCCTGGCACCGGAATCCGCCTGGCTGCGGTTGCCGCTACAGTCCTGTAATGTACAGGTGCCCCAGTTGT‑CATCCCATTTGCCATCGGCATTAGTGGAGAAACTGCCGACGTTCATATTGACGAAATCA‑CTGC‑GAAAGAACATCCGCCCGTCAGAATACGGCGCATCCACCTGCAACATGGTAGTGTgc                   <  1:741375/231‑1 (MQ=255)
                                                                                                                                                                                                                             tGGTACCGATATCCCAGCTCCAGACGTCATTTCGCCAGCCGACCGCCACGCTGGCACCGGAATCCGACTGGCTGCGGTTGCCGCTACAGTCCTGTAATGTACAGGTGCCCCAGTTGT‑CATCCCATTTGCCATCGGCATTATTGGGGAAACTGCCGACGTTCCTATTGACGAAATCA‑CTCC‑GAAAGAACATCCCCCCGTCAGCATACCGGCCCTCCACCTCCAACATgggcgctgtttct                >  1:867198/1‑228 (MQ=255)
                                                                                                                                                                                                                                   ccatacccccccTCCGGCCGTCTTTTCGCCAGCCGACCGCCACGCTGGCACCGGAATCCGGCTGGCTGCGGTTGCCGCTACAGTCCTGTAATGTACAGGTGCCCCAGTTGT‑CATCCCATTTGCCATCGGCATTAGTGGAGAAACTGCCGACGTTCATATTGACGAAATCA‑CTGC‑GAAAGAACATCCGCCCGTCAGAATACGGCGCATCCACCTGCAACATGGTAGTGTGCGCTTTCAGa          <  1:274759/228‑1 (MQ=255)
                                                                                                                                                                                                                                      taccccAGCTCCAGACGTCATTTCGCCAGCCGACCGCCACGCTGGCACCGGAATCCGACTGGCTGCGGTTGCCGCTACAGTCCTGTAATGTACAGGTGCCCCAGTTGT‑CATCCCATTTGCCATCGGCATTAGTGGAGAAACTGCCGACGTTCATATTGACGAAATCA‑CTGC‑GAAAGAACATCCGCCCGTCAGAATACGGCGCATCCACCTGCAACATGGTAGTGTGCGCTTTCAGATc        <  2:693554/235‑1 (MQ=255)
                                                                                                                                                                                                                                          ccAGCTCCAGACGTCATTTCGCCAGCCGACCGCCACGCTGGCACCGGAATCCGACTGGCTGCGGTTGCCGCTACAGTCCTGTAATGTACAGGTGCCCCAGTTGT‑CATCCCATTTGCCATCGGCATTAGTGGAGAAACTGCCGACGTTCATATTGACGAAATCA‑CTGC‑GAAAGAACATCCGCCCGTCAGAATACGGCGCATCCACCTG‑AACATGGGAGGTTGGGCTTTCAGATCGGAGTa  >  2:196834/1‑239 (MQ=255)
                                                                                                                                                                                                                                               |                                                                                                                                                                                                                                             
ACCTTTATCGTAGCTCAGACTTAGCCCCACACCGTCGGCACGTACGCCACCCCATTTTTTCCCGGTATTGCTCGGGGAGTC‑TTTTTG‑CCCACCAAAGGCCAGCAAAGAACTGGAGATGGG‑CCGACGGTGGGCG‑TTAACGGTGTAA‑CCCA‑GCGGCCCGATATCATCGCTGTAACTGATGCCGCCGACCACATCCACCACGTTGAAGCCCATCGGCGTGGTACCGATATCCCAGCTCCAGACGTCATTTCGCCAGCCGACCGCCACGCTGGCACCGGAATCCGACTGGCTGCGGTTGCCGCTACAGTCCTGTAATGTACAGGTGCCCCAGTTGT‑CATCCCATTTGCCATCGGCATTAGTGGAGAAACTGCCGACGTTCATATTGACGAAATCA‑CTGC‑GAAAGAACATCCGCCCGTCAGAATACGGCGCATCCACCTGCAACATGGTAGTGTGCGCTTTCAGATCGGAGTA  >  NC_000913/3686305‑3686772

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑

GATK/CNVnator alignment

N/A