Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A12 F52 I0 R1 83 172.7 3180974 97.2% 3091906 265.9

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation freq annotation gene description
RA NC_000913 4,296,059 C→T 6.6% intergenic (+266/+378) gltP → / ← yjcO glutamate/aspartate:proton symporter/Sel1 family TPR‑like repeat protein

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0009134,296,0590CT 6.6% 253.4 / 9.3 106intergenic (+266/+378)gltP/yjcOglutamate/aspartate:proton symporter/Sel1 family TPR‑like repeat protein
Reads supporting (aligned to +/- strand):  ref base C (48/50);  new base T (4/3);  total (52/54)
Fisher's exact test for biased strand distribution p-value = 7.16e-01
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 7.66e-01

Only 100 of 107 total aligned reads displayed.

ATAAAACTGCGGATCAATAATTGAAGATTGCCGGGGATATCCACCCGGCAATGT‑GTGAATGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTG‑ATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTATGCCGCATCCGACATCAACGCCTGATGCGACGCTTAACGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTACGCCGCATCCGACATCAACGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTAC‑GCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTATGCCGCATCCGACATCAACGCCTGATGCGACGCTTAACGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTATGCCGCATCCGACATCAACGCCTGATGCGACGCTTAACGCGTCTTATCAGGCCTACGCCA  >  NC_000913/4295774‑4296326
                                                                                                                                                                                                                                                                                               |                                                                                                                                                                                                                                                                            
aTAAAACTGCGGATCAATAATTGAAGATTGCCGGGGATATCCACCCGGCAATGT‑GTGAATGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTG‑ATTTAGCGTGATTTTGTAGGTCGGATAAGGTGTTTATGCCGCATCCGACATCAACGCCTGATGCGACGCTTAACGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTACGCCGCATCCGACATCAACg                                                                                                                                                                                                                                                                             >  1:1107157/1‑287 (MQ=255)
      cTGCGGATCAATAATTGAAGATGGCCGGGGATATCCACCCGGCAATGT‑GTGAATGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTG‑ATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTATGCCGCATCCGACATCAACGCCTGATGCGACGCTTAACGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTACGCCGCATCCGACATCAACGCCTGATGc                                                                                                                                                                                                                                                                     <  1:664712/289‑1 (MQ=255)
       tgggggctaataatGGAAGGATGCGGGGGAGTTCCACCGGGCAATGG‑GGCAATGCCTGAGGGGACGCTGGCCGCGGCTTATCAGGCCTACGCCAGACAGGGCAATAGCCTG‑ATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTATGCCGCATCCGACATCAACGCCTGATGCGACGCTTAACGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTACGCCGCATCCGACATCAACGCCTGATGc                                                                                                                                                                                                                                                                     <  2:1126231/280‑1 (MQ=11)
            cgtgattttgtaggtcggataaggcgtttacgccgcatccgacatcAACGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTG‑ATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTATGCCGCATCCGACATCAACGCCTGATGCGACGCTTAACGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTACGCCGCATCCGACATCAATGCCTGATGCGAc                                                                                                                                                                                                                                                                  <  2:1510506‑M1/241‑1 (MQ=255)
            cgtgattttgtaggtcggataaggcgtttacgccgcatccgacatcAACGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTG‑ATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTATGCCGCATCCGACATCAACGCCTGATGCGACGCTTAACGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTACGCCGCATCCGACATCAACGCCTGATGCGAc                                                                                                                                                                                                                                                                  <  2:1452902‑M1/241‑1 (MQ=255)
            cgtgattttgtaggtcggataaggcgtttacgccgcatccgacatcAACGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTG‑ATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTATGCCGCATCCGACATCAACGCCTGATGCGACGCTTAACGCGTCTTATCAGGCCTACGCCAGACAGCGCAAAAGCCTGATTTCGCGTGATTTTGTAGGTCGGATAAGGCCTTTACGCCGCATCCGACATCAATCcctgattctac                                                                                                                                                                                                                                                                  <  2:821372‑M1/241‑6 (MQ=255)
                attttgtaggtcggataaggcgtttacgccgcatccgacatcAACGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTG‑ATTTAGCGTGATTTTGTAGTTCGGATAAGGCGTTTATGCCGCATCCGACATCAACGCCTGATGCGACGCTTAACGCGTCTTATCAGGCCTAAGCCAGACAGAGCAATAGCCTGAATTAGCGTTATTTTGTAGGTCGGATAAGGCGTATACGCCGCACACGACATCAAATCCTGATGCCACGcttt                                                                                                                                                                                                                                                             <  2:400301‑M1/246‑2 (MQ=255)
                 ttttgtaggtcggataaggcgtttacgccgcatccgacagcAACGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTG‑ATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTATGCCGCATCCGACATCAACGCCTGATGCGACGCTTAACGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTACGCCGCATCCGACATCAATGCCTGATGCGACGCTTGc                                                                                                                                                                                                                                                            >  1:614049‑M1/42‑288 (MQ=255)
                   atTGAAGATTGCCGGGGATATCCACCCGGCAATGT‑GTGAATGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTG‑ATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTATGCCGCATCCGACATCAACGCCTGATGCGACGCTTAACGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCCGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTACGCCGCACCCGACATCAACGCCTGATGCGACGCTTGCcgcg                                                                                                                                                                                                                                                        >  1:278398/1‑289 (MQ=255)
                     gtgggtcggataaggcgtttacgccgcatcccacctcAACGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGTCTT‑ATTTAGCGTGATTTTATAGGTCGGATAAGGCGTTTATGCCGCATCCGACATCAACGCCTGATGCGACGCTTAACGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTACGCCGCATCCGACATCAATGCCTGATGCGACGCTTGCCGCGt                                                                                                                                                                                                                                                       >  1:185749‑M1/38‑289 (MQ=255)
                      gAAGATTGCCGGGGATATCCACCCGGCAATGT‑GTGAATGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTG‑ATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTATGCCGCATCCGACATCAACGCCTGATGCGACGCTTAACGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTACGCCGCATCCGACATCAACGCCTGATGCGACGCCTGCCGCGTCt                                                                                                                                                                                                                                                     >  2:556818/1‑289 (MQ=255)
                         gATTGCCGGGGATATCCACCCGGCAATGT‑GTGAATGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTG‑ATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTATGCCGCATCCGACATCAACGCCTGATGCGACGCTTAACGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTACGCCGCATCCGACATCAACGCCTGATGCGACGCTTGCCGCGTCTTa                                                                                                                                                                                                                                                   >  1:873159/1‑288 (MQ=255)
                          tgcccgtgggATATCTCCCCGGAACTGG‑ATGAATGCCGGATGGTACGGTTGCCGCGGCTGATCAGGCTGACGCGAGAAAGCGCAATAGACTG‑ATTTAGCTTGATTTTGTGGGTCGGAGAAGGCGTTTATGCCGCAGCCGACATCAACGCCTGATGCGACGCTTGACGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTACGCCGCATCCGACATCAACGCCTGATGCGACGCTTGCCGCGTCTTAt                                                                                                                                                                                                                                                  <  2:22238/281‑1 (MQ=11)
                          aTTGCCGGCGGTCGCCACCCGGCAAGGT‑GTGAATGCCTGCTGCGACGCTTGCCGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTG‑ATTTGGGGTGATTTTGTAGGTCGGATAAGGCGTTTATGCCGCATCCGACATCAACGCCTGATGCGACGCTTAACGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTACGCCGCATCCGACATCAACGCCTGATGCGACGCTTGCCGCGTCTTAt                                                                                                                                                                                                                                                  <  2:1441051/288‑1 (MQ=255)
                           cggataaggcgtttacgccgcatccgacatcAACGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTG‑ATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTATGCCGCATCCGACATCAACGCCTGATGCGACGCTTAACGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAACCTGATGTAGCGTGACTTAGTAGCTCGGATAAGGCCTTCACGCCGCCTCGCACattcattcctgatgcgacacgttccggctcctatc                                                                                                                                                                                                                                                 <  2:373786‑M1/258‑18 (MQ=255)
                              ccGGGGATATCCACCCGGCAATGT‑GTGAATGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTG‑ATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTATGCCGCATCCGACATCAACGCCTGATGCGACGCTTAACGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTACGCCGCATCCGACATCAACGCCTGATGCGACGCTTGCCGCGTCTTATCAgg                                                                                                                                                                                                                                              >  2:1340472/1‑288 (MQ=255)
                              ccGGGGATATCCACCCGGCAATGT‑GTGAATGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTG‑ATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTATGCCGCATCCGACATCAACGCCTGATGCGACGCTTAACGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTACGCCGCATCCGACATCAACGCCTGATGCGACGCTTGCCGCGTCTTATCAGGc                                                                                                                                                                                                                                             <  1:1340472/289‑1 (MQ=255)
                              ccGGGGAGTTCCCCCCGCCAAGGG‑GTGATGCCCTGAGGGGACGCTGGCCCCGTCTTATAAGCCCTACGCCATGAAGAGCAATAGCCTG‑ATTTTGCGTGATTTAGTAGGTCGGATAAGGCGTTTATGCCGCATCCGACATCAACGCCTGATGCGACGCTTAACGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTACGCCGCATCCGACATCAACGCCTGATGCGACGCTTGCCGCGTCTTATCAGGc                                                                                                                                                                                                                                             <  2:739703/289‑1 (MQ=11)
                               taaggcgtttacgccgcatccgacatcAACGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTG‑ATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTATGCCGCATCCGACATCAACGCCTGATGCGACGCTTAACGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTACGCCGCATCCGACATCAACGCCTGATGCGACGCTTGCCGCGTCTTATCAGGc                                                                                                                                                                                                                                             >  1:1452902‑M1/28‑289 (MQ=255)
                               cGGGGATATCCACCCGGCAATGT‑GTGAATGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTG‑ATTTAGCGTGATTTTGTAGGTCGGATGAGGCGTTTATGCCGCATCCGACATCAACGCCTGATGCGACGCTTAACGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTACGCCGCATCCGACATCAACGCCTGATGCGACGCTTAACGCGTCTTATCAGGc                                                                                                                                                                                                                                             <  1:658637/288‑1 (MQ=255)
                               cGGGGATATCCACCCGGCAATGT‑GTGAATGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTG‑ATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTATGCCGCATCCGACATCAACGCCTGATGCGACGCTTAACGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTACGCCGCATCCGACATCAACGCCTGATGCGACGCTTGCCGCGTCTTATCAGGc                                                                                                                                                                                                                                             <  1:1194489/288‑1 (MQ=255)
                                 gggATATTCACCCGGCAATGT‑GTGAATGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTG‑ATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTATGCCGCATCCGACATAAACGCCTGATGCGACGCTTAACGCGTCTTCTCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTACGACGCATCCGACATCAACGCCTGAGGCGCCGCTTGCCGCGTCTTATCAGGCCt                                                                                                                                                                                                                                           >  1:39289/1‑288 (MQ=255)
                                    atttcctccCGTAAAGGT‑GTGAATGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTG‑ATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTATGCCGCATCCGACATCAACGCCTGATGCGACGCTTAACGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTACGCCGCATCCGACATCAACGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTAC‑g                                                                                                                                                                                                                                       <  2:1429954/285‑1 (MQ=255)
                                      atCCACCCGGCAATGT‑GTGAATGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTG‑ATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTATGCCGCATCCGACATCAACGCCTGATGCGACGCTTAACGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTACGCCGCATCCGACATCAACGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTAC‑GCCa                                                                                                                                                                                                                                    <  1:177640/289‑1 (MQ=255)
                                        ccgcccGGAAATGT‑GTGAATGCCTGAGACGACGCTTGCCGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTG‑ATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTATGCCGCATCCGACATCAACGCCTGATGCGACGCTTAACGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTACGTCGCATCCGACATCAACGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTAC‑GCCAGa                                                                                                                                                                                                                                  <  1:927166/286‑1 (MQ=255)
                                            ccGGCAATGT‑GTGAATGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTG‑ATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTATGCCGCATCCGACATCAACGCCTGATGCGACGCTTAACGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTACGCCGCATCCGACATCAACGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTAC‑CCCatccag                                                                                                                                                                                                                               >  2:1474942/1‑283 (MQ=255)
                                            ccGGCAAAGTGGTGAATGACGGAGGCGAGGCTTGCTGCGTCGTATCGGGCGTACGCCGGGCGGCGAAATAGCCTG‑ATTTAGCTGGATTTTGGAGGTCGGGTAAGGGGTTTGGGCCACATCCGACAGCAACGCCTGATGGGGCGCTTAAAGGGTCTTATCGGAACTACGCAAGCCAGCGCAATAGCCTGATTTGGCGTGATTTTGTAGGACGGAGAAGGCGTTGACGCCGCATCAGACAAGAACGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTAC‑GCCAGAc                                                                                                                                                                                                                                 <  2:171005/287‑1 (MQ=9)
                                                cAATGT‑GTGAATGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTG‑ATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTATGCCGCATCCGACATCAACGCCTGATGCGACGCTTAACGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTACGCCGCATCCGACATCAACGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTAC‑GCCAGACAGCGCaa                                                                                                                                                                                                                          >  2:579005/1‑289 (MQ=38)
                                                  aagggttgAATGCCTGATGGGACGCTTGCCGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTG‑ATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTATGCCGCATCCGACATCAACGCCTGATGCGACGCTTAACGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTACGCCGCATCCGACATCAACGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTAC‑GCCAGACAGCGCaa                                                                                                                                                                                                                          <  1:997160/282‑1 (MQ=25)
                                                    gt‑gtgAATGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTG‑ATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTATGCCGCATCCGACATCAACGCCTGATGCGACGCTTAACGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTACGCCGCATCCGACATCAACGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTAC‑GCCAGACAGCGCAATAGc                                                                                                                                                                                                                      <  1:686744/289‑1 (MQ=37)
                                                    gt‑gtgAATGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTG‑ATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTATGCCGCATCCGACATCAACGCCTGATGCGACGCTTAACGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTACGCCGCATCCGACATCAACGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTAC‑GCCAGACAGCGCAATAGc                                                                                                                                                                                                                      <  1:1424310/289‑1 (MQ=37)
                                                    gt‑gtaAATGCCTAATGCTACGCTTGCCGCTTCTTATCATGCCATCGCCATTCAGCACAATAACCTT‑ATTTAGCTTGATTTTGTGGATCTTGTATGGCTATTTTGCCCCATCCTGCATCAGCGCCTAATGCTACGCTTAACTCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGATCGGATAGGGCGTTTACGCCGCATCCGACATCAACGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTAC‑GCCATACAGCGCAATAGc                                                                                                                                                                                                                      <  2:224020/289‑1 (MQ=11)
                                                     t‑gtgAATGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTG‑ATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTATGCCGCATCCGACATCAACGCCTGATGCGACGCTTAACGCGTCCTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTACGCCGCATCCGACATCAACCCCTGATGCGACGCCTGCCGCGTCTTATCAGGCCCAC‑GCCATACAGCGCAATacc                                                                                                                                                                                                                      >  1:171005/1‑286 (MQ=255)
                                                                tgttgcaacggattccgcatgataacAGGCCAGCGCCAGAGGGCTCAATA‑CCTGTAGTTGGCGTGATTTTGTAGGGACAGTAATGCGTTTACGCCCCACCCGACATCAACTCCTGATGCGACGCTTAACGCGTTTTATCAGACGTACCCCAGACTGCGCAATAGCCTGATTTTGCGTGATTTTGTAGGTCGGATAAGGGGTTTCCTCCCCCTCCGACATCAACGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTAC‑GCCAGACAGCGCAATAGCCTGATTTAGCg                                                                                                                                                                                                           <  2:39289/264‑1 (MQ=2)
                                                                TGATGCGACGCTTGCCGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTG‑ATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTATGCCGCATCCGACATCAACGCCTGATGCGACGCTTAACGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTACGCCGCATCCGACATCAACGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTAC‑GCCAGACAGCGCaa                                                                                                                                                                                                                          >  1:1589382‑M1/1‑274 (MQ=255)
                                                                TGATGCGACGCTTGCCGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTG‑ATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTATGCCGCATCCGACATCAACGCCTGATGCGACGCTTAACGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTACGCCGCATCCGACATAAACGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTAC‑GCCAGACAGCGCaa                                                                                                                                                                                                                          <  2:1589382‑M1/274‑1 (MQ=255)
                                                                 ggtgggACGCTTGCGGCGTCTTATCAGGCCTACGCCAGACAGGGCAATAGCCTG‑ATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTATGCCGCATCCGACATCAACGCCTGCTGCGACGTTTAACGCGTTTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGGGATTTTGTAGGTCGGATAAGGCGTTTACGCCGCATCCGACATCAACGCCTGATGCGACGCTTGCCGCGGCTTATCAGGCCTAC‑GCCAGACAGCGCAATAGCCTGATTTAGCg                                                                                                                                                                                                           <  1:1556838/283‑1 (MQ=255)
                                                                   TGCGACGCTTGCCGCGGCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTG‑ATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTATGCCGCATCCGACATCAACGCCTGATGCGACGCTTAACGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTACGCCGCATCCGACATCAACGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTAC‑GCCAGACAGCGCAATAGCCTGATTTAGCGTGa                                                                                                                                                                                                        >  1:1137841‑M1/1‑289 (MQ=255)
                                                                      GACGCTTGCCGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTG‑ATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTATGCCGCATCCGACATCAACGCCTGATGCGACGCTTAACGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCGGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTACGCCGCATCCGACATCAACGCATGATGCGCTCCTTGCCGGGCATTACctggcctactgcca‑acagcgcaaaccccggacttagggtcattt                                                                                                                                                                                                     <  2:614049‑M1/289‑22 (MQ=255)
                                                                        CGCTTGCCGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTG‑ATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTATGCCGCATCCGACATCAACGCCTGATGCGACGCTTAACGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTACGCCGCATCCGACATCAATGcc                                                                                                                                                                                                                                                                           >  2:207267‑M1/1‑218 (MQ=255)
                                                                        CGCTTGCCGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTG‑ATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTATGCCGCATCCGACATCAACGCCTGATGCGACGCTTAACGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTACGCCGCATCCGACATCAATGcc                                                                                                                                                                                                                                                                           <  1:207267‑M1/218‑1 (MQ=255)
                                                                             GCCGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTG‑ATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTATGCCGCATCCGACATCAACGCCTGATGCGACGCTTAACGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTACGCCGCATCCGACATCAACGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTAC‑GCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGt                                                                                                                                                                                              >  1:1100454‑M1/1‑289 (MQ=255)
                                                                                      tatacggctgacggcagaaggggcATTAGCCTG‑ATTTAGCGGGGTTTTGGAGGGCGGAAAAGGCGTTTAGGCCCCATGCGATATCAGCGCCTGATGTGTCGCATAACGCGTCTTATCAGGCATACGTCAGACGGCGAAATAGCCTGACTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTACGCCGCATCCGACATCAACGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTAC‑GCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAgg                                                                                                                                                                                     <  2:713854/267‑1 (MQ=11)
                                                                                              CTACGCCAGACAGCGCAATAGCCTG‑ATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTATGCCGCATCCGACATCAACGCCTGATGCGACGCTTAACGCGTCTTACCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTACGCCGCATCCGACATCAACGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTAC‑GCCAGACAGCGCAATAGCCTGATTTAGCg                                                                                                                                                                                                           >  2:1051359‑M1/1‑259 (MQ=255)
                                                                                              CTACGCCAGACAGCGCAATAGCCTG‑ATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTATGCCGCATCCGACATCAACGCCTGATGCGACGCTTAACGCGTCTTACCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTACGCCGCATCCGACATCAACGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTAC‑GCCAGACAGCGCAATAGCCTGATTTAGCg                                                                                                                                                                                                           <  1:1051359‑M1/259‑1 (MQ=255)
                                                                                                 cGCCAGACAGCGCAATAGCCTG‑ATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTATGCCGCATCCGACATCAACGCCTGATGCGACGCTTAACGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTACGCCGCATCCGACATCAACGCCTGATGCGACGCTTGCCGCGTCTTATCAGGc                                                                                                                                                                                                                                             <  2:576708/223‑1 (MQ=31)
                                                                                                 cGCCAGACAGCGCAATAGCCTG‑ATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTATGCCGCATCCGACATCAACGCCTGATGCGACGCTTAACGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTAGTAGGTCGGATAAGGCGTTTACGTCGCATCCGACATCAACGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTAC‑GCAAGACAGCGCAATAGCCTGATCTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTATGcc                                                                                                                                                                           >  1:64642/1‑288 (MQ=21)
                                                                                                      gACAGCGCAATAGCCTG‑ATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTATGCCGCATCCGACATCAACGCCTGATGCGACGCTTAACGCGACTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGAGTGATGTTGTAGGTCGGATAAGGCGTTTACGCCGCATCCGACATCAACGCCTGATGCGACGCTTGCCGCGACTTATCAGGCCTAC‑GCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGTATAAGTCGTTTATGCCGCATcc                                                                                                                                                                     >  1:1272934/1‑289 (MQ=255)
                                                                                                           cgcAATAGCCTG‑ATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTATGCCGCATCCGACATCAACGCCTGATGCGACGCTTAACGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTACGCCGCATCCGACATCAACGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTAC‑GCCAGa                                                                                                                                                                                                                                  >  1:576708/1‑223 (MQ=34)
                                                                                                                tAGCCTG‑ATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTATGCCGCATCCGACATCAACGCCTGATGCGACGCTTAACGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTACGCCGCATCCGACATCAACGCCTGATGTGACGCTTGCCGCGTCTTATCAGGCCTAC‑GCCACACAGCGCAATAGCCTTATTCAACGTGATTTTTTAACTCGGATAATGCGATTCGTCCGCATCCGCCATCAAc                                                                                                                                                            >  2:1197539/1‑288 (MQ=11)
                                                                                                                   ccTG‑ATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTATGCCGCATCCGACATCAACGCCTGATGCGACGCTTAACGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTACGCCGCATCCGACATCAACGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTAC‑CCCAACCGGCGCAATAGCCTGAATTAGCTTCATTTTGTGTGTCGGAAAATGCGATTACGCCCCCTCCGACCTCAACGcc                                                                                                                                                         >  2:225926/1‑288 (MQ=11)
                                                                                                                     tG‑ATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTATGCCGCATCCGACATCAACGCCTGATGCGACGCTTAACGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTACGCCGCATCCGACATCAACACCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTAC‑GCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTATGCCGCATCCGACATCAACGCCTGa                                                                                                                                                      >  2:1421099/1‑289 (MQ=25)
                                                                                                                        aTTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTATGCCGCATCCGACATCAACGCCTGATGCGACGCTTAACGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTACGCCGCATCCGACATCAACGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTAC‑GCCAGACAGCGCAATCGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTATGCCGCATCCGACATCAACGCCTGAt                                                                                                                                                     >  2:1311116/1‑288 (MQ=25)
                                                                                                                             gCGTGCTTTTGTAGGTCGGATAAGGCGTTTATGCCGCATCCGACATCAACGCCTGATGCGACGCTTAACGCGGCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGCTTTTGTAGGTCGGACAAGGCGTTTACGCCCCATCCGACCTCAACGCCTGATGCGACGCTTGACGCGCCCTATCAGTCCTTA‑CCGACACAGCGCAATCGCCTGAATCAGCGTCTCTTAGTGGGTAGGATACGTCCTTTCAGTCGCATctcaccttactctcctatcctag                                                                                                                                                >  2:1459065/1‑266 (MQ=11)
                                                                                                                             gCGTGATTTTGTAGGTCGGATAAGGCGTTTATGCCGCATCCGACATCAACGCCTGATGCGACGCTTAACGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTACGCCGCATCCGACATCAACGCCTGATGCGACGCTTGCCGCGTCTTAt                                                                                                                                                                                                                                                  >  1:759556/1‑191 (MQ=31)
                                                                                                                              cgcgATTTTGTAGGTCGGATAAGGCGTTTATGCCGCATCCGACATCAATGCTTGATGCTACGCTTAACGCGTCTTTTCAGGCCTACGCCAGACATCGCATTAGCCTCATTTAGCGTGATTTTGTAGTTCGGATAAGGCGTTTACGCCGCCTCTCACATCAACGCCTGATGCGACGGCTGCTGCGTCTTATCCGGCCTAC‑CCCACTCCGAGGCATCAGCAGCATTCTCGCCCTCTTGTACGTCTGCTTAGACGTTTATGCCACATCCGACATCCACGCCAGTTGCGatg                                                                                                                                               >  2:1566554/4‑286 (MQ=2)
                                                                                                                                  aTTTTGTAGGTCGGATAAGGCGTTTATGCCGCATCCGACATCAACGCCTGATGCGACGCTTAACGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTACGCCGCATCCGACATCAACGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTAC‑GCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTATGCCGCATCCGACATCAACGCCTGATGCGACGCTTaa                                                                                                                                          <  1:548214/289‑1 (MQ=37)
                                                                                                                                       gTAGGTTGTATAAGAGGGTCATGCCGCGCCCGAGATGAACGCCAGTTGCGACGCTGAACGGGTCTTATCAGGCCTGAGACAGAACGCGCAATAGCATGATTTAGCGTGATTTTGTAGGTCGGATAAGGGGTTTACGCCGCAGCCGACATCAACGCCTGATGCGACGCTGGCCGCGTCTTATCAGGCCTAC‑GCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTATGCCGCATCCGACATCAACGCCTGATGCGACGCTTAACGCGt                                                                                                                                     <  2:1107157/289‑1 (MQ=11)
                                                                                                                                             tggaagaGGCGGTTATCGCGCAGCCGAAATAAAGGCCTGAGGGTAGGATTAGCCGGTCTTATGAGGGTGACGCCAGGGTGCGCAATAGCCTGATTTAGCGTTATTTTGTAGGTTGGTTAAGGCGTTTACGCCGCGACCGGCATCAACGCCTGATGCGACGCTGGCCGCGTCTTATCAGGCCTAC‑GCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTATGCCGCATCCGACATCAACGCCTGATGCGACGCTTAACGCGTCTTAt                                                                                                                                <  2:505166/282‑1 (MQ=11)
                                                                                                                                             cGGATAAGGCGTTTATGCCGCATCCGACATCAACGCCTGATGCGACGCTTAACGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTACGCCGCATCCGACATCAACGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTAC‑CCCAAGCAGCGCCATAGCCTGATTTCGCGTGATTTTGTAGGTCGGATAAGGCCTTTAAGCCCCATCCGACTTCAACCCCTGATTCTAAGCTTTAcgccgctttaa                                                                                                                               >  2:656241/1‑281 (MQ=11)
                                                                                                                                                 tAAGGCGTTTCTCCCGCTCACTTCATCAACGCCTGATGGGACGCTTAACCCGACTTATCAGGCGTCCGCCAGACAGCGAAATAGCTGGATTTGACGTCATTTTGTAGGTCGGATAAGGCGTTTACGCCGCATCCGGCATCAACGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTAC‑GCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTATGCCGCATCCGACATCAACGCCTGATGCGACGCTTAACGCGTCTTATCAGGc                                                                                                                           <  2:873159/289‑1 (MQ=11)
                                                                                                                                                 tAAGGCGTTTATGCCGCATCCGACATCAACGCCTGATGCGACGCTTAACGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTACGCCGCATCCGACATCAACGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTAC‑GCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTATGCCGCATCCGACATCAACGCCTGATGCGACGCTTAACGCGTCTTATCAGGc                                                                                                                           <  1:579005/289‑1 (MQ=37)
                                                                                                                                                 acaGGCGTTTATGCCGCAACGTGCATCAAAGCCTGATGCGACGCTTAACGCGTGTTTTCGGGCCTACGCCAGAGAGCGAAATAGCCTGATTTAGCGTGATTTTTTGGGTCGGGTAAGGCGTTTACGCCGCATCCGACATCAACGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTAC‑GCCAGACAGCGAAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTATGCCGCATCCGACATCAACGCCTGATGCGACGCTTAACGCGTCTTATCAGGc                                                                                                                           <  2:788004/287‑1 (MQ=11)
                                                                                                                                                         ttATGCCGGCACCGACATCAACGCCGGATGCGACGCTTAACGCGTCTTATCAGGCCTACGCCAGACAGCGAAATAGCCTGATTTATCGTGATTTTGTAGGTCGGATAAGGCGTTTACGCCGCATCCGACATCAACGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTAC‑GTCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTATGCCGCATCCGACATCAACGCCTGATGCGACGCTTAACGCGTCTTATCAGGCCTACGCCa                                                                                                                   <  2:1096533/289‑1 (MQ=255)
                                                                                                                                                           gtgtcGCAGCAGACAGCAACGCATGACGCGAAGCTTGACGGGTCTTATCAGGGTTACGCCAGGAAGCGAGATGGCCTGAGTTAGCGTGATTTGGTGGGTCGGATAAGGCGTGTACGCCGGATCCGGCATCAACGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTAC‑GCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTATGCCGCATCCGACATCAACGCCTGATGCGACGCTTAACGCGTCTTATCAGGCCTACGCCAGa                                                                                                                 <  2:1130241/285‑1 (MQ=11)
                                                                                                                                                           aTGCCGCATCCGACATCAACGCCTGATGCGACGCTTAACGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTACGCCGCATCCGACATCAACACCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTAC‑GCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTATGCCGCATCCGACATCAACGCCTGATGCGACGCTTAACGCGTCTTATCAGGCCTACGCCAGa                                                                                                                 <  1:1421099/289‑1 (MQ=37)
                                                                                                                                                               cGCATCCGACATCAACGCCTGATGCGACGCTTAACGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTACGCCGCATCCGACATCAACGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTAC‑GCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTATGCCGCATCCGACATCAACGCCTGATGCGACGCTTAACGCGTCTTATCAGGCCTACGCCAGACAg                                                                                                              <  1:1311116/288‑1 (MQ=35)
                                                                                                                                                                 cATCCGACATCAACGCCTGATGCGACGCTTAACGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTACGCCGCATCCGACATCAACGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTAC‑GCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTATGCCGCATCCGACATCAACGCCTGATGCGACGCTTAACGCGTCTTATCAGGCCTACGCCAGACAgcgc                                                                                                           >  2:482504/1‑289 (MQ=35)
                                                                                                                                                                  aTCCGACATCAACGCCTGATGCGACGCTTAACGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTACGCCGCATCCGACATCAACGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTAC‑GCCAGACAGCGCAATAGCCTGATATAGCGTGATTGTCGAGGTCGGATAAGGCGTTTATGCACAATCCGACATCAACGCCTGGTGCGACGTTTGACGCGTCGTCACACGCCTACGCCAgcccacgca                                                                                                          >  2:1262800/1‑281 (MQ=11)
                                                                                                                                                                   cccGACATCAACGCCTGATGGTACGCTTAACGGGTCTGATCAGCCCTACGCCAGACGGAGAAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGAAAAGGCGTTTACGCCGCATCCGACATCAACGCCGGATGCGACGCTTGCCGCGTCTTATCAGGCCTAC‑GCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTATGCCGCATCCGACATCAACGCCTGATGCGACGCTTAACGCGTCTTATCAGGCCTACGCCAGACAGCGCaa                                                                                                         <  1:1555577/288‑1 (MQ=11)
                                                                                                                                                                                         aCGCTTAACGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTACGCCGCATCCGACATCAACGCCTGATGCGACGCTTGCCGCGTCTTATCAGGc                                                                                                                                                                                                                                             >  2:1238004/1‑136 (MQ=32)
                                                                                                                                                                                          cGCTTAACGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTACGCCGCATCCGACATCAACGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTAC‑GCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTATGCCGCATCCGACATCAACGCCTGATGCGACGCTTaa                                                                                                                                          >  1:300833/1‑233 (MQ=37)
                                                                                                                                                                                          cGCTTAACGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTACGCCGCATCCGACATCAACGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTAC‑GCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTATGCCGCATCCGACATCAACGCCTGATGCGACGCTTaa                                                                                                                                          <  2:300833/233‑1 (MQ=37)
                                                                                                                                                                                           ctttaggtggttgtagcAGGCCTGCGCCAGGAGGTGAAAAAGCTTGTTTTAGGGTGAATTGGTAGGGCGAATAGGTCTTCTACAGCGCAGCCGACGTCATCGCCTGATGCGTCTGTTGCTGAGGCTTTTCAGGCCTAC‑GCGCGACAGCGCAATAGCCTGATTGAGCGTGATTTTGTAGGTCGGATAATGCGTTTATGCCGCAGCCGACATCAACGCCTGATGCGACGCTTAACGCGTCTTATCAGGCCGACGCCAGACAGAGCAATAGCCTGATTTAGCGTGATTTTg                                                                                  <  2:1576588/272‑1 (MQ=2)
                                                                                                                                                                                               agcgagtctagtCAAGCCTACGCCAGACAGCGCAATGGGCTGATTGAGCTTGATTTTGTAGGTCGGAGAAGGCGTTTACACCGCATCAGGCATCAACACCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTAA‑GCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTATGCCGCATCCGACATCAACGCCTGATGCGACGCTTAACGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGt                                                                             <  1:83913/278‑1 (MQ=11)
                                                                                                                                                                                               aaCGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTACGCCGCATCCGACATCAACGCCTGATTCGACGCTTGCCGCGTCTTATCAGGCCTAC‑GCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTATGCCGCATTCGCCATCCACGCCCGATGCGACGCTTCACGCGTCTTTTCAGGCCTACGCCAGACAGCGCAATCACCTGATTTAGCGTGATTTTGTAgg                                                                              >  1:624121/1‑288 (MQ=255)
                                                                                                                                                                                                     tCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTACGCCGCATCCGACATCAACGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTAC‑GCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTATGCCGCATCCGACATCAAAGCCTGATGCGACGCTTAACGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATa                                                                       >  1:1160525/1‑289 (MQ=18)
                                                                                                                                                                                                      cTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTACGCCGCATCCGACATCAACGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTAC‑GCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTATGCCGCATCCGACATCAACGCCTGATGCGACGCTTaa                                                                                                                                          <  2:615852/221‑1 (MQ=34)
                                                                                                                                                                                                      cTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTACGCCGCATCCGACATCAACGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTAC‑GCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTATGCCGCATCCGACATCAACGCCTGATGCGACGCTTaa                                                                                                                                          >  1:615852/1‑221 (MQ=34)
                                                                                                                                                                                                       ttATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTACGCCGCATCCGACATCAACGCCTGATGCGACGCTTGCCGCGTCTTAt                                                                                                                                                                                                                                                  >  2:330332/1‑117 (MQ=32)
                                                                                                                                                                                                          tCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTACGCCGCATCCGACATCAACGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTAC‑GCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTATGCCGCATCCGACATCAACGCCTGATGCGACg                                                                                                                                               >  2:1418987/1‑212 (MQ=34)
                                                                                                                                                                                                          tCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTACGCCGCATCCGACATCAACGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTAC‑GCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTATGCCGCATCCGACATCAACGCCTGATGCGACg                                                                                                                                               <  1:1418987/212‑1 (MQ=34)
                                                                                                                                                                                                              gCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTACGCCGCATCCGACATCAACGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTAC‑GCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTATGCCGCATCCGACATCAACGCCTGATGCGACGCTTAACGCGTCTTATCAGGc                                                                                                                           <  2:1155920/228‑1 (MQ=34)
                                                                                                                                                                                                              gCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTACGCCGCATCCGACATCAACGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTAC‑GCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTATGCCGCATCCGACATCAACGCCTGATGCGACGCTTAACGCGTCTTATCAGGc                                                                                                                           >  1:1155920/1‑228 (MQ=34)
                                                                                                                                                                                                                 tACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTACGCCGCATCCGACATCAACGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTAC‑GCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTATGCCGCATCCGACATCAACGCCTGATGCGACGCTTAACGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTacg                                                            >  1:1076781/1‑286 (MQ=17)
                                                                                                                                                                                                                        gACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTACGCCGCATCCGACATCAACGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTAC‑GCCAGACAGCGCAATAGCCTGATTTAGCGTGACTTTGTAGGTCGGATAAGGCGTTTATGCCGCATCCGACATCAACGCCTGATGCGACGCTTAACGCGTCTTATCAGGCCTACGCCAAACACCGGAAAAGCCTGACTTACCGTGATTTTGTAGGTCGGATTAGGCGTTTaccccccacc                                                     >  2:556294/1‑279 (MQ=11)
                                                                                                                                                                                                                             cgcAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTACGCCGCATCCGACATCAACGCCTGATGCGACGCTTTCTGCGTCTTATCAGGCCTAC‑GCCAGACAGCGCATAAGCCTGATTCAGCCTGATTTTGAAGGTCGGATAAGGCCTTTCCGCAGCATCAGACATCAATCCCTGAGGCGACGCTTCACGAGTCCTAGCAGGCCTCTGCTACCAATCGTCATACACTGATTTCGTGTGCTTTTGTCGGTCGGATacgtacattagcacgtatccgaac                                                >  2:1165038/1‑265 (MQ=2)
                                                                                                                                                                                                                             cgcAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTACGCCGCATCCGACATCAACGCCTGATGCGACGCTTGc                                                                                                                                                                                                                                                            <  1:821127/85‑1 (MQ=33)
                                                                                                                                                                                                                             cgcAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTACGCCGCATCCGACATCAACGCCTGATGCGACGCTTGc                                                                                                                                                                                                                                                            >  2:821127/1‑85 (MQ=33)
                                                                                                                                                                                                                             cgcAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTACGCCGCATCCGACATCAACGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTAC‑GCCAGACAGCGCaa                                                                                                                                                                                                                          <  2:330462/118‑1 (MQ=39)
                                                                                                                                                                                                                               cAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTACGCCGCATCCGACATCAACGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTAC‑GCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTATGCCGCATCCGACATCAACGCCTGATGCGACGCTTAACGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCg                                                                                          <  1:1226432/244‑1 (MQ=33)
                                                                                                                                                                                                                                     ccTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTACGCCGCATCCGACATCAACGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTAC‑GCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTATGCCGCATCCGACATCAACGCCTGATGCGACGCTTAACGCGTCTTATc                                                                                                                               <  2:1195195/201‑1 (MQ=34)
                                                                                                                                                                                                                                       tGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTACGCCGCATCCGACATCAACGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTAC‑GCCAGACAGCGCAATAGCCTGATTTAGCGTCATTTTGTAGGTCGGATAAGGCGTTTATGCCGCATCCGACATCAACGCCTGATGCGACGCTTACCGCGTCTTATCAGGCCTACGCCAGACAGTGCAATAGCCTGATTTAGCGTGACTCTGTAGGGCGGATAAGGTGTTGAAGCCGCAGTCCACATCCATGCCTGa                                     >  2:1198312/1‑289 (MQ=11)
                                                                                                                                                                                                                                        gATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTACGCCGCATCCGACATCAATGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTAC‑GCAAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAACGCGTTTATGCCGCATCCGACATCAACTCCTGATGCGCCGCTTACCGCGTCTTACCAGTCCTACGCTACACCTTGCAATACCCTTCTTCCGCGCGCATTCGTGGGTCGGTTACGGCTTTTACGGCCCATCTGATATCAATTCCTGAt                                    >  2:459340/1‑289 (MQ=11)
                                                                                                                                                                                                                                         aTTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTACGCCGCATCCGACATCAACGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTAC‑GCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGt                                                                                                                                                                                              >  1:489529/1‑134 (MQ=37)
                                                                                                                                                                                                                                         aTTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTACGCCGCATCCGACATCAACGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTAC‑GCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTATGCCGCATCCGACATCAACGCCTGATGCGACGCTTAACGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTa                                                                                >  2:1226432/1‑244 (MQ=33)
                                                                                                                                                                                                                                               cGTGATTTTGTAGGTCGGATAAGGCGTTTACGCCGCATCCGACATCAACGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTAC‑GCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTATGCCGCATCCGACATCAACGCCTGATGCGACGCTTAACGCGTCTTATCAGGCCTACGc                                                                                                                     >  1:1195195/1‑201 (MQ=34)
                                                                                                                                                                                                                                                       ttgaggttgtggagggggtgtACGCAGAAACCGACATGAACGCCGGAGGCGTCGCTTGGCTCTTCTTATCAGGCCGAC‑GCGAGTAAGCGAAATAGCCTGATTTAGCGTTATTTTGGAGGTCGGATAAGGCGTTTAAGCCGGTTCCGACATCAACTCCTGATGCGACGCTTAACGCGTCTTATCAGGCCTACGCCAGACAGCGAAATAGCCTGATTGAGCGTGATTTTGTAGGTCGGATAAGGCGTTTACGCCGCCTCCGACATCAATGCCTGATGCGACGCTTGCcgcg                     <  2:368000/269‑1 (MQ=11)
                                                                                                                                                                                                                                                                          ttACGCCGCATCCGACATCAACGTACGATGCGACGCTTGCCGAGTCTTATCAGGACTAA‑GCAAGACAGGGCAATAGCCTGATTTAGCGTGATTTTGTAGGTAGGAAAAGGCGTTTATGCCGCATCCGACATCAAAGCCTGATTCGACGCTTAACGCCTATTATCATGCCTACGCCAGATAGCGCCATAGCCTGGTTTAGCGTGATTTTGTAGGTCTGTTCAGGCGTTTCAGCCGCATCCCATATTAATTCCTGATGCCATGCCTGACCCGTCCCATCacgacgaatcta  >  2:884826/1‑278 (MQ=2)
                                                                                                                                                                                                                                                                                         cATCAACGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTAC‑GCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTATGCCGCATCCGACATCAACGCCTGATGCGACGCTTAACGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGc                                                                                                     <  1:620462/175‑1 (MQ=33)
                                                                                                                                                                                                                                                                                               |                                                                                                                                                                                                                                                                            
ATAAAACTGCGGATCAATAATTGAAGATTGCCGGGGATATCCACCCGGCAATGT‑GTGAATGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTG‑ATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTATGCCGCATCCGACATCAACGCCTGATGCGACGCTTAACGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTACGCCGCATCCGACATCAACGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTAC‑GCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTATGCCGCATCCGACATCAACGCCTGATGCGACGCTTAACGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTATGCCGCATCCGACATCAACGCCTGATGCGACGCTTAACGCGTCTTATCAGGCCTACGCCA  >  NC_000913/4295774‑4296326

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 9 ≤ ATCG/ATCG < 11 ≤ ATCG/ATCG < 30 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑

GATK/CNVnator alignment

N/A