Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.

ALE, Flask, Isolate	Predicted Mutations	Mean Coverage	Total Reads	Percent Mapped	Mapped Reads	Average Read Length
A13 F191 I0 R1	49	68.0	1456600	97.2%	1415815	140.0

Breseq alignment

BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	freq	annotation	gene	description
RA	CP000730	911,610	G→A	100%	intergenic (‑221/‑107)	USA300HOU_0869 ← / → USA300HOU_0870	hypothetical membrane protein/ABC superfamily ATP binding cassette transporter, ABC protein

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	CP000730	911,610	0	G	A	100.0%	209.9 / NA	60	intergenic (‑221/‑107)	USA300HOU_0869/USA300HOU_0870	hypothetical membrane protein/ABC superfamily ATP binding cassette transporter, ABC protein
Reads supporting (aligned to +/- strand): ref base G (0/0); new base A (25/35); total (25/35)
Rejected as polymorphism: Frequency below/above cutoff threshold.
Rejected as polymorphism: Variant not supported by required number of reads on each strand.

TTTTAAATTCATAAAATCCATTGAGAAATTATGTGCACTTATTATCATTTATATTTTTAAAGAGAGCGGATTAGAGTTGTACTTTAGAGTTATTAAAAATAATAAAAAGGGTTTAAGTTGTTTATATTAAGGTATAAGTAAGTTATAATTAACTGAACGCATTATTACAAAGTCTTTTTGACTACAAATTAAAATTATTATAAACTAGTTAAGAAAACTTTATATTTTACGGAGGGAATATAAAATGGCATCAACATTAGAAATCAAAGACCT  >  CP000730/911473‑911745

ttttAAATTCATAAAATCCATTGAGAAATTATGTGCACTTATTATCATTTATATTTTTAAAGAGAGCGGATTAGAGTTGTACTTTAGAGTTATTAAAAATAATAAAAAGGGTTTAAGTTGTTTATATTAAGGTAtaaata                                                                                                                                       >  2:130515/1‑140 (MQ=255)

ttttAAATTCATAAAATCCATTGAGAAATTATGTGCACTTATTATCATTTATATTTTTAAAGAGAGCGGATTAGAGTTGTACTTTAGAGTTATTAAAAATAATAAAAAGGGTTTAAGTTGTTTATATTAAGGTAtaaata                                                                                                                                       >  2:377733/1‑140 (MQ=255)

       ttCATAAAATCCATTGAGAAATTATGTGCACTTATTATCATTTATATTTTTAAAGAGAGCGGATTAGAGTTGTACTTTAGAGTTATTAAAAATAATAAAAAGGGTTTAAGTTGTTTATATTAAGGTATAAATAAGTtata                                                                                                                                <  2:76851/140‑1 (MQ=255)

       ttCATAAAATCCATTGAGAAATTATGTGCACTTATTATCATTTATATTTTTAAAGAGAGCGGATTAGAGTTGTACTTTAGAGTTATTAAAAATAATAAAAAGGGTTTAAGTTGTTTATATTAAGGTATAAATAAGTtata                                                                                                                                <  1:370185/140‑1 (MQ=255)

          aTAAAATCCATTGAGAAATTATGTGCACTTATTATCATTTATATTTTTAAAGAGAGCGGATTAGAGTTGTACTTTAGAGTTATTAAAAATAATAAAAAGGGTTTAAGTTGTTTATATTAAGGTATAAATAAGTTATAAtt                                                                                                                             <  2:481684/140‑1 (MQ=255)

               gtCCATTGAGAAATTATGTGCACTTATTATTATTTATATTTTTAAAGAGAGCGGATTAGAGTTGTACTTTAGAGTTATTAAAAAGAATAAAAAGGGTTTAAGTTGTTTATATTAAGGTATAAATAAGTTATAATTAACTg                                                                                                                        <  1:89328/139‑1 (MQ=255)

               aTCCATTGAGTAATTATGTGCAATTATTATCATTTATATTTTTAAAGAGAGCGGATTAGAGTTGTACTTTAGAGTTATTAAAAATAATAAAAAGGGTTTAAGTTGTTTATATTAAGGTATAAATAAGTTATAATTAACTg                                                                                                                        <  1:74818/140‑1 (MQ=255)

               aTCCATTGAGAAATTATGTGCACTTATTATCATTTATATTTTTAAAGAGAGCGGATTAGAGTTGTACTTTAGAGTTATTAAAAATAATAAAAAGGGTTTAAGTTGTTTATATTAAGGTATAAATAAGTTATAATTAACTg                                                                                                                        <  1:131575/140‑1 (MQ=255)

               aTCCATTGAGAAATTATGTGCACTTATTATCATTTATATTTTTAAAGAGAGCGGATTAGAGTTGTACTTTAGAGTTATTAAAAATAATAAAAAGGGTTTAAGTTGTTTATATTAAGGTATAAATAAGTTATAATTAACTg                                                                                                                        <  1:131287/140‑1 (MQ=255)

               aTCCATTGAGAAATTATGTGCACTTATTATCATTTATATTTTTAAAGAGAGCGGATTAGAGTTGTACTTTAGAGTTATTAAAAATAATAAAAAGGGTTTAAGTTGTTTATATTAAGGTATAAATAAGTTATAATTAACTg                                                                                                                        >  1:559439/1‑140 (MQ=255)

                    ttGAGAAATTATGTGCACTTATTATCATTTATATTTTTAAAGAGAGCGGATTAGAGTTGTACTTTAGAGTTATTAAAAATAATAAAAAGGGTTTAAGTTGTTTATATTAAGTTATAAATAAGTTATAATTAACTGAACGc                                                                                                                   >  1:613172/1‑140 (MQ=255)

                        gaAATTATGTGCACTTATTATCATTTATATTTTTAAAGAGAGCGGATTAGAGTTGTACTTTAGAGTTATTAAAAATAATAAAAAGGGTTTAAGTTGTTTATATTAAGGTATAAATAAGTTATAATTAACTGAACGCatta                                                                                                               >  2:721696/1‑140 (MQ=255)

                                gtgCACTTATTATCATTTATATTTTTAAAGAGAGCGGATTAGAGTTGTACTTTAGAGTTATTAAAAATAATAAAAAGGGTTTAAGTTGTTTATATTAAGGTATAAATAAGTTATAATTAACTGAACGCATTATTACAAAg                                                                                                       <  1:673343/140‑1 (MQ=255)

                                    aCTTATTATCATTTATATTTTTAAAGAGAGCGGATTAGAGTTGTACTTTAGAGTTATTAAAAATAATAAAAAGGGTTTAAGTTGTTTATATTAAGGTATAAATAAGTTATAATTAACTGAACGCATTATTACAAAGTCtt                                                                                                   <  2:532342/140‑1 (MQ=255)

                                         ttatCATTTATATTGTTAAAGAGAGCGGATTAGAGTTGTACTTTAGATTTATTAAAAATAATAAAAAGGGTTTAAGTTGTGTATATTAAGGTATAAATAAGTTATAATTAACTGAACGCATTATTACAAAGTCTTTTTGa                                                                                              <  1:434248/140‑1 (MQ=255)

                                          tatCATTTATATTTTTAAAGAGAGCGGATTAGAGTTGTACTTTAGAGTTATTAAAAATAATAAAAAGGGTTTAAGTTGTTTATATTAAGGTATAAATAAGTTATAATTAACTGAACGCATTATTACAAAGTCTTTTTggc                                                                                             >  1:226109/1‑138 (MQ=255)

                                          tatCATTTATATTTTTAAAGAGAGCGGATTAGAGTTGTACTTTAGAGTTATTAAAAATAATAAAAAGGGTTTAAGTTGTTTATATTAAGGTATAAATAAGTTATAATTAACTGAACGCATTATTACAAAGTCTTTTTGAc                                                                                             <  1:505734/140‑1 (MQ=255)

                                          tatCATTTATATTTTTAAAGAGAGCGGATTAGAGTTGTACTTTAGAGTTATTAAAAATAATAAAAAGGGTTTAAGTTGTTTATATTAAGGTATAAATAAGTTATAATTAACTGAACGCATTATTACAAAGTCATTTTAAc                                                                                             >  2:347253/1‑140 (MQ=255)

                                           atCATTTATATTTTTAAAGAGAGCGGATTAGAGTTGTACTTTAGAGTTATTAAAAATAATAAAAAGGGTTTAAGTTGTTTATATTAAGGTATAAATAAGTTATAATTAACTGAACGCATTATTACAAAGTCTTTTTGACt                                                                                            <  1:721696/140‑1 (MQ=255)

                                           atCATTTATATTTTTAAAGAGAGCGGATTAGAGTGGTATTTTAGAGTTATTAAAAATAATAAAAAGGGTTTAAGTTGTTTATATTAAGGTATAAATAAGTTATAATTAACTGAACGCATTATTACAAAGTCTTTTTGACt                                                                                            <  2:264412/140‑1 (MQ=255)

                                                  atatTTTTAAAGAGAGCGGATTAGAGTTGTACTTTAGAGTTATTAAAAATAATAAAAAGGGTTTAAGTTGTTTATATTAAGGTATAAATAAGTTATAATTAACTGAACGCATTATTACAAAGTCTTTTTGACTACaaatt                                                                                     >  2:590158/1‑140 (MQ=255)

                                                         tAAAGAGTGCTGATTAGAGTTTTACTTTAGAGTTATTAAAAATAATAAAAAGTGTTTAAGTTGTTTATATTAAGGTATAAATAAGTTATAATTAACTGAACGCATTATTACAAAGTCTTTTTGACTACaaattaaaatta                                                                              <  2:229195/140‑1 (MQ=255)

                                                            agagggCGGATTAGAGTTGTACTTTAGAGTTATTAAAAATAATAAAAAGGGTTTAAGTTGTTTATATTAAGGTATAAATAAGTTATAATTAACTGAACGCATTATTACAAAGTCTTTTTGACTACAAATTAAAAttatta                                                                           <  1:368106/140‑1 (MQ=255)

                                                            agagagCGGATTATAGTTGTACTTTAGAGTTATTAAAAATAATAAAAAGGGTTTAAGTTGTTTATATTAAGGTATAAATAAGTTATAATTAACTGAACGCATTATTACAAAGTCTTTTTGACTACAACTTAAAAttatta                                                                           <  1:377733/140‑1 (MQ=255)

                                                            agagagCGGATTAGAGTTGTACTTTAGAGTTATTAAAAATAATAAAAAGGGTTTAAGTTGTTTATATTAAGGTATAAATAAGTTATAATTAACTGAACGCCTTATTACAAAGTCTTTTTGACTACAAATTAAAAttatta                                                                           >  1:535617/1‑140 (MQ=255)

                                                               gagCGGATTAGAGTTGTACTTTAGAGTTATTAAAAATAATAAAAAGGGTTTAAGTTGTTTATATTAAGGTATAAATAAGTTATAATTAACTGAACGCATTATTACAAAGTCTTTTTGACTACAAATTAAAATTATTATaa                                                                        >  1:69982/1‑140 (MQ=255)

                                                                 gCGGATTAGAGTTGTACTTTATAGTTATTAAAAATAATAAAAAGGGTTTAAGTTGTTTATATTAAGGTATAAATAAGTTATAATTAACTGAACGCATTATTACAAAGTCTTTTTAACTACAAATTAAAATTATTATAAAc                                                                      >  1:570057/1‑140 (MQ=255)

                                                                      ttAGAGTTGTACTTTAGAGTTATTAAAAATAATAAAAAGGGTTTAAGTTGTTTATATTAAGGTATAAATAAGTTATAATTAACTGAACGCATTATTACAAAGTCTTTTTGACTACAAATTAAAATTATTATAAACTAGtt                                                                 >  1:134559/1‑140 (MQ=255)

                                                                      ctAGAGGTGTACTTTAGAGTTATTAAAAATAATAAAAAGGGTTTAAGTTGTTTATATTAAGGTATAAATAAGTTATAATTAACTGAACGCATTATTACAAAGTCTTTTTGACTACAAATTAAAATTATTATAAACTAGtt                                                                 >  2:188017/2‑140 (MQ=255)

                                                                           gTTGTACTTTAGAGTTATTAAAAATAATAAAAAGGGTTTAAGTTGTTTATATTAAGGTATAAATAAGTTATAATTAACTGAACGCATTATTACAAAGTCTTTTTGACTACAAATTAAAATTATTATAAACTAGTTAAGaa                                                            <  1:675168/140‑1 (MQ=255)

                                                                           gTTGTACTTCAGAGTTAGTAAAAATAATAAAAAGGGTTTAAGTTGTTTATATTAAGGTATAAATAAGTTATAATTAACTGAACGCATTATTACAAAGTCTTTTTGACTACAAATTTATGTGATGATAAACTAGTTAAGaa                                                            <  2:515820/140‑1 (MQ=255)

                                                                            ttGTACTTTAGAGTTATTAAAAATAATAAAAAGGGTTTAAGTTGTTTATATTAAGGTATAAATAAGTTATAATTAACTGAACGCATTATTACAAAGTCTTTTTGACTACAAATTAAAATTATTATAAACTAGTTAAGaaa                                                           <  2:379379/140‑1 (MQ=255)

                                                                             tttACTTTAGAGTTATTAAAAATAATAAAAAGGGTTTAAGTTGTTTATATTAAGTTATAAATAAGTTATAATTAACTGAACGCATTATTACAAAGTCTTTTTGACTACAAATTAAAATTATTATAAACTAGTTAAGaaaa                                                          <  2:179246/138‑1 (MQ=255)

                                                                              gTACTTTAGAGTTATTAAAAATAATAAAAAGGGTTTAAGTTGTTTATATTAAGGTATAAATACGTTATAATTAACTGAACGCATTATTACAAAGTCTTTTTGACTACAAATTAAAATTATTATAAACTAGTTAAGAAAAc                                                         <  1:488854/140‑1 (MQ=255)

                                                                                aCTTTAGAGTTATTAAAAATAATAAAAAGGGTTTAAGTTGTTTATATTAAGGTATAAATAAGTTATAATTAACTGAACGCATTATTACAAAGTCTTTTTGACTACAAATTAAAATTATTATAAACTAGTTAAGAAAACtt                                                       <  2:359816/140‑1 (MQ=255)

                                                                                   ttAGAGTTATTAAAAATAATAAAAAGGGTTTAAGTTGTTTATATTAAGGTATAAATAAGTTATAATTAACTGAACGCATTATTACAAAGTCTTTTTGACTACAAATTAAAATTATTATAAACTAGTTAAGAAAACTTtat                                                    >  1:51113/1‑140 (MQ=255)

                                                                                   ttAGAGTTATTAAAAATAATAAAAAGGGTTTAAGTTGTTTATATTAAGGTATAAATAAGTTATAATTAACTGAACGCATGATTACAAAGTCTTTTTGACTACAAATTAAAATTATTATAAACTAGTTAAGAAAACTTtat                                                    <  1:103606/140‑1 (MQ=255)

                                                                                     agagTTATTAAAAATAATAAAAAGGGTTTAAGTTGTTTATATTAAGGTATAAATAAGTTATAATTAACTGAACGCATTATTACAAAGTCTTTTTGACTACAAATTAAAATTATTATAAACTAGTTAAGAAAACTTTatat                                                  >  1:154018/1‑140 (MQ=255)

                                                                                       agTTATTAAAAATAATAAAAAGGGTTTAAGTTGTTTATATTAAGGTATAAATAAGTTATAATTAACTGAACGCATTATTACAAAGTCTTTTTGACTACAAATTAAAATTATTATAAACTAGTTAAGAAAACTTTATAttt                                                <  2:232550/140‑1 (MQ=255)

                                                                                             taAAAATAATAAAAAGGGTTTAAGTTGTTTATATTAAGGTATAAATAAGTTATAATTAACTGAACGCATTATTACAAAGTCTTTTTGACTACAAATTAAAATTATTATAAACTAGTTAAGAAAACTTTATATTTTACGGa                                          <  1:337860/140‑1 (MQ=255)

                                                                                                aaaTGATAAAAAGGGTTTAAGTTGTTTATATTAAGGTATAAATAAGTTATAATTAACTGAACGCATTATTACAAAGTCTTTTTGACTACAAATTAAAATTATTATAAACTAGTTAAGAAAACTTTATATTTTACGGAggg                                       >  1:494873/1‑140 (MQ=255)

                                                                                                aaaTAATAAAAAGGGTTTAAGTTGTTTATATTAAGGTATAAATAAGTTATAATTAACTGAACGCATTATTACAAAGTCTTTTTGACTACAAATTAAAATTATTATAAACTAGTTAAGAAAACTTTATATTTTACGGAggg                                       >  2:572369/1‑140 (MQ=255)

                                                                                                  ataataAAAAGGGTTTAAGTTGTTTATCTTAAGGTATAAATAAGTTATAATTAACTGAACGCATTATTACAAAGTCTTTTTGACTACAAATTAAACTTATTATAAACTAGTTAAGAAAACTTTATATTTTACGGAGGGaa                                     <  1:412577/140‑1 (MQ=255)

                                                                                                  ataataAAAAGGGTTTAAGTTGTTTATATTAAGGTATAAATAAGTTATAATTAACTGAACGCATTATTACAAAGTCTTTTTGACTACAAATTAAAATTATTATAAACTAGTTAAGAAAATTTTATATTTTATGAAGGaaa                                     >  2:111172/1‑140 (MQ=255)

                                                                                                  ataataAAAAGGGTTTAAGTTGTTTATATTAAGGTATAAATAAGTTATAATTAACTGAACGCATTATTACAAAGTCTTTTTGACTACAAATTAAAATAATGATAAACTAGTTAAGAAAACTTTATATTTTACGGAGAGaa                                     >  1:451793/1‑140 (MQ=255)

                                                                                                   taataaAAAGGGTTTAAGTTGTTTATATTAAGGTATAAATAAGTTATAATTAACTGAACGCATTATTACAAAGTCTTTTTGACTACAAATTAAAATTATTATAAACTAGTTAAGAAAACTTTATATTTTACGGAGGGAat                                    <  1:608862/140‑1 (MQ=255)

                                                                                                      taaAAAGGGTTTAAGTTGTTTATATTAAGGTATAAATAAGTTATAATTAACTGAACGCATTATTACAAAGTCTTTTTGACTACAAATTAAAATTATTATAAACTAGTTAAGAAAACTTTATATTTTACGGAGGGAAtata                                 <  1:387757/140‑1 (MQ=255)

                                                                                                      taaAAAGGGTTTAAGTTGTTTATATTAAGGTATAAATAAGTTATAATTAACTGAACGCATTATTACAAAGTCTTTTTGACTACAAATTAAAATTATTATAAACTAGTTAAGAAAACTTTATATTTTACGGAGGGAAtata                                 <  1:228458/140‑1 (MQ=255)

                                                                                                      ctcaacgggatcaaGGTGTTTATATTAAGGTATAAATAAGTTATAATTAACTGAACGCATTATTACAAAGTCTTTTTGACTACAAATTAAAATTATTATAAACTAGTTAAGAAAACTTTATATTTTACGGAGGGAAtata                                 <  2:506837/128‑1 (MQ=255)

                                                                                                          aaGGGTTTAAGTTGTTTCTATTAAGGTATAAATAAGTTATTATTAACTGAACGCATTATTACAAAGTCTTTTTGACTACAAATTAAAATGATTATAAACTAGTTAAGAAAACTTTATATTTTACGGAGGGAATATAAAAt                             <  1:481407/140‑1 (MQ=255)

                                                                                                                ttAAGTTGTTTATATTAAGGTATAAATAAGTTATAATTAACTGACCGCATTATTACAAAGTCTTTTTGACTACAAATTAAAATTATTATAAACTAGTTAAAAAAACTTTATAATTTACGAAGGGAATATAAAATGGAATc                       >  1:214931/1‑140 (MQ=255)

                                                                                                                ttAAGTTGTTTATATTAAGGTATAAATAAGTTATAATTAACTGAACGCATTATTACAAAGTCTTTTTGACTACAAATTAAAATTATTATAAACTAGATAAGAAAACTTTATATTTTACGGAGGGAATAGAAAAtagaatg                       >  1:35077/1‑134 (MQ=255)

                                                                                                                    gtttttTATATTAAGGTATAAATAAGTTATAATTAACTGAACGCATTATTACAAAGTCTTTTTGACTACAAATTAAAATTATTATAAACTAGTTAAGAAAACTTTATATTTTACGGAGGGAATATAAAATGGCATCAACa                   <  2:625762/140‑1 (MQ=255)

                                                                                                                    gttgttTATATTAAGGGATAAATAAGTTATAATTAACTGAACGCATTATTACAAAGTCTTTTTGACTACAAATTAAAATTATTATAAACTAGTTAAGAAAACTTTATATTTTACGGAGGGAATATAAAATGGCATCAACa                   <  2:677130/140‑1 (MQ=255)

                                                                                                                        tttATATTAAGGTATAAATAAGTTATAATTAACTGAACGCATTATTACAAAGTCTTTTTGACTACAAATTAAAATTATTATAAACTAGTTAAGAAAACTTTATATTTTACGGTGGGAATATAAAATGGCATCAACATTAg               >  2:303469/1‑140 (MQ=255)

                                                                                                                        tttATATTAAGGTATAAATAAGTTATAATTAACTGAACGCATTATTACAAAGTCTTTTTGACTACAAATTAAAATTATTATAAACTAGTTAAGAAAACTTTATATTTTACGGAGGGAATATAAAATGGCATCAACATTAg               >  1:687086/1‑140 (MQ=255)

                                                                                                                           atatTAAGGTATAAATAAGTTATAATTAACTGAACGCATTATTACAAAGTCTTTTTGACTACAAATTAAAATTATTATAAACTAGTTAAGAAAACTTTATATTTTACGGAGAGAAGATAAAAAGGCATAAACAGTAGaaa            >  1:283579/1‑140 (MQ=255)

                                                                                                                            tatTAAGGTATAAATAAGTTATAATTAACTGAACGCATTATTACAAAGTCTTTTTGACTACAAATTAAAATTATTATAAACTAGTTAAGAAAACTTTATATTTTACGGAGGGAATATAAAATGGCATCAACATTAGAAAt           <  2:578095/140‑1 (MQ=255)

                                                                                                                             atTAAGGTATAAATAAGTTATAATTAACTGAACGCATTATTACAAAGTCTTTTTGACTACAAATTAAAATTATTATAAACTAGTTAAGAAAACTTTATATTTTACGGAGGGAATATAAAATGGCATCAACATTAGAAATc          >  1:42763/1‑140 (MQ=255)

                                                                                                                             atTAAGGTATAAATAAGTTATAATTAACTGAACGCATTATTACAAAGTCTTTTTGACTACAAATTAAAATTAGTATAAACTAGTTAAGAAAACTTTATATTTTACGGAGGGAATATAAAATGGCATCAACATTAGAAATc          >  1:152580/1‑140 (MQ=255)

                                                                                                                             atTAAGGTATAAATAAGTTATAATTAACTGAACGCATTATTACAAAGTCTTTTTGACTAAAAATTAAAATTATTATAAACTAGTTAAGAAAACTTTATATTTTACGGAGGGAATATAAAATGGCATCAACATTAGAAATc          >  2:427933/1‑140 (MQ=255)

                                                                                                                              ttAAGGTATAAATAAGTTATAATTAACTGAACGCATTATTACAAAGTCTTTTTGACTACAAATTAAAATTATTATAAACTAGTTAAGAAAACTTTATATTTTACGGAGGGAATATAAAATGGCATCAACATTAGAAATCa         <  2:688567/140‑1 (MQ=255)

                                                                                                                                     ataaataaGTTATACTTAACTGAACGCATTATTACAACGTCTTTTTGACTATATATTTAAATTATTATAAACTAGTTAAGAAAACTTTATATTTTACGGAGGGAATATAAAATGGCATCAACATTAGAAATCAAAGACCt  <  1:522/140‑1 (MQ=255)

                                                                                                                                     ataaataaGTTATAATTAACTTAACGCATTATTACAAAGTCTTTTTGACTACAAATTAAAATTATTATAAACTAGTTAAGAAAACTTTATATTTTACGGAGGGAATATAAAATGGCATCAACATTAGAAATCAAAGACCt  <  1:155777/140‑1 (MQ=255)

                                                                                                                                     ataaataaGTTATAATTAACTGAACGCATTATTACAAAGTCTTTTTGACTACAAATTAAAATTATTATAATCTAGTTAAGAAAACTTTATATTTTACGGAGGGAATATAAAATGGCATCAACATTAGAAATCAAAGACCt  <  1:23004/140‑1 (MQ=255)

                                                                                                                                     ataaataaGTTATAATTAACTGAACGCATTATTACAAAGTCTTTTTGACTACAAATTAAAATTATTATAAACTAGTTAAGAAAACTTTATATTTTACGGAGGGAATATAAACTGTCTTCGGTAGTAGAAATCAAAGACCt  <  2:700685/140‑1 (MQ=255)

                                                                                                                                     ataaataaGTTATAATTAACTGAACGCATTATTACAAAGTCTTTTTGACTACAAATTAAAATTATTATAAACTAGTTAAGAAAACTTTATATTTTACGGAGGGAATATAAAATGGCATCAACATTAGAAATCAAAGACCt  <  1:358053/140‑1 (MQ=255)

                                                                                                                                     ataaataaGTTATAATTAACTGAACGCATTATTACAAAGTCTTTTTGACTACAAATTAAAATTATTATAAACTAGTTAAGAAAACTTTATATTTTACGGAGGGAATATAAAATGGCATCAACATTAGAAATCAAAGACCt  <  1:613011/140‑1 (MQ=255)

TTTTAAATTCATAAAATCCATTGAGAAATTATGTGCACTTATTATCATTTATATTTTTAAAGAGAGCGGATTAGAGTTGTACTTTAGAGTTATTAAAAATAATAAAAAGGGTTTAAGTTGTTTATATTAAGGTATAAGTAAGTTATAATTAACTGAACGCATTATTACAAAGTCTTTTTGACTACAAATTAAAATTATTATAAACTAGTTAAGAAAACTTTATATTTTACGGAGGGAATATAAAATGGCATCAACATTAGAAATCAAAGACCT  >  CP000730/911473‑911745

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 12 ≤` `ATCG/ATCG` `< 13 ≤` `ATCG/ATCG` `< 32 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`

GATK/CNVnator alignment

N/A