Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A9 F174 I0 R1 55 81.0 1740380 95.7% 1665543 141.0

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation freq annotation gene description
RA CP000730 2,028,269 G→C 100% P126A (CCA→GCA)  USA300HOU_1882 ← hypothetical membrane protein

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*CP0007302,028,2690GC100.0% 256.0 / ‑6.5 75P126A (CCA→GCA) USA300HOU_1882hypothetical membrane protein
Reads supporting (aligned to +/- strand):  ref base G (0/0);  major base C (32/40);  minor base A (1/2);  total (33/42)
Rejected as polymorphism: E-value score below prediction cutoff.
Rejected as polymorphism: Frequency below/above cutoff threshold.
Rejected as polymorphism: Variant not supported by required number of reads on each strand.

TAACCTGCACTTTACCTAAAATGTGTCTAACAACAATGGTATTATTTTCCTTAATATTTGCAGCTTTTGTTAAGTCAATATGTAGGTCGCCAATTCCATGTTGAATTTGTACATCTTCCCACTTATATACATAAACTGGTGTACGTTGCTCACCAAACCACTTTTGTTTAATAAAAGATGGTGAAGTCATAACCTCATCCGTCGCAACTACTTTTTTTGGTTTAAACTTGTGTATTAAATAACGCACAATAAGTAATAATAAAAAGACGAACAA  >  CP000730/2028131‑2028404
                                                                                                                                          |                                                                                                                                       
taACCTGCACTTTACCTAAAATGTGTCTAACAACAATGGTATTAGTTTCCTTAATATTTGCAGCTTTTGTTAAGTCAATATGTAGGTCGCCAATTCCATGTTGAATTTGTACATCTTCCCACTTATATACATAAActgctg                                                                                                                                       >  2:142165/1‑141 (MQ=255)
   ccTGCACTTTACCTAAAATGTGTCTAACAACAATGGTATTATTTTCCTTAATATTTGCAGCTTTTGTTAAGTCAATATGTAGGTCGCCAATTCCATGTTGAATTTGTACATCTTCCCACTTATATACATAAACTGCTGTAc                                                                                                                                    >  1:843038/1‑141 (MQ=255)
   ccTGCACTTTACCTAAAATGTGTCTAACAACAATGGTATTATTTTCCTTAATATTTGCAGCTTTTGTTAAGTCAATATGTAGGTCGCCAATTCCATGTTGAATTTGTACATCTTCCCACTTATATACATAAACTGCTGTAc                                                                                                                                    <  2:684725/141‑1 (MQ=255)
          ttttCCTAAAATGTGTCTAACAACAATGGTATTATTTTCCTTAATATTTGCAGCTTTTGTTAAGTCAATATGTAGGTCGCCAATTCCATGTTGAATTTGTACATCTTCCCACTTATATACATAAACTGCTGTACGTTGCTc                                                                                                                             <  2:779250/141‑1 (MQ=255)
          tttACCTAAAATGTGTCTAACAACAATGGTATTATTTTCCTTAATATTTGCAGCTTTTGTTAAGTCAATATGTAGGTCGCCAATTCCATGTTGAATTTGTACATCTTCCCACTTATATACATAAACTGCTGTACGTTGCTc                                                                                                                             <  1:830749/141‑1 (MQ=255)
          tttACCTAAAATGTGTCTAACAACAATGGTATTATTTTCCTTAATATTTGCAGCTTTTGTTAAGTCAATATGTAGGTCGCCAATTCCATGTTGAATTTGTACATCTTCCCACTTATATACATAAACTGCTGTACGTTGCTc                                                                                                                             <  2:589611/141‑1 (MQ=255)
           ttACCTCAACTGTGCCTAACAACAATGGTATTAATTTCCTTAATATTTGCAGCTTTTGTTAAGTCAATATGTAGGTCGCCAATTCCATGTTGAATTTGTACATCTTCCCACTTATATACATAAACTGCTGTACGTTGCTCa                                                                                                                            <  1:178916/141‑1 (MQ=255)
             aCCTAAAATGTGTCTAACAACAATTGTATTATTTTCCTTAATATTTGCAGCTTTTGTTAAGTCAATATGTAGGTCGCCAATTCCATGTTGAATTTGTACATCTTCCCACTTATATACATAAACTGCTGTACGTTGCTCAcc                                                                                                                          <  1:151086/141‑1 (MQ=255)
              ccTAAAATGTGTCTAACAACAATGGTATTATTTTCCTTAATATTTGCAGCTTTTGTTAAGTCAATATGTAGGTCGCCAATTCCATGTTGAATTTGTACATCTTCCCACTTATATACATAAACTGCTGTACGTTGCTCACCa                                                                                                                         <  1:823383/141‑1 (MQ=255)
               cTAAAATGTGTCTAACAACAATGGTATTATTTTCCTTAATATTTGCAGCTTTTGTTAAGTCAATATGTAGGTCGCCAATTCCATGTTGAATTTGTACATCTTCCCACTTATATACATAAACTGCTGTACGTTGCTCACCaa                                                                                                                        >  2:345312/1‑141 (MQ=255)
               cTAAAATGTGTCTAACAACAATGGTATTATTTTCCTTAATATTTGCAGCTTTTGTTAAGTCAATATGTAGGTCGCCAATTCCATGTTGAATTTGTACATCTTCCCACTTATATACATAAACTGCTGTACGTTGCTCACCaa                                                                                                                        >  2:38208/1‑141 (MQ=255)
                   aaTGTGTCTAACAACCTTGTCGTTTTGGTCCGTAATATTGTCAGCTTTTGTTAAGTCAATATGTAGGTCTCCAATTCCATGTCGGATTTGTGCGTCTTCCCACTTATGTACGTAAACGGCTGTACGTTGCTGACCAAACCa                                                                                                                    <  2:387592/141‑1 (MQ=255)
                   aaTGTGTCTAACAACAATGGTATTATTTTCCTTAATATTTGCAGCTTTTGTTAAGTCAATATGTAGGTCGCCAATTCCATGTTGAACTTGTACATCTTCCCACTTATATACATAAACTGCTGTACGTTGCTCACCAAACCa                                                                                                                    <  2:842927/141‑1 (MQ=255)
                        gtCTAACAACAATGGTATTATTTTCCTTAATATTTCCAGCTTTTGCTAAGTCAATACGTAGGTCGCCAATTCCACGTTGAATTTGTACATCTTCCCACTTATATACATAAACTGCTGTACGTTGCTCACCAAACCACtttt                                                                                                               >  2:75359/1‑141 (MQ=255)
                         tCTAACAACAATGGTAGTATTTTCCTTCATATTTGCAGCTTTTGTTAAGTCAATATGTAGGTCGCCAATTCCATGTTGAATTTTTACATCTTCCCACTTATATACATAAACTGCTGTACGTTGCTCACCAAACCACTTTTg                                                                                                              <  2:13839/141‑1 (MQ=255)
                          cTAACAACAATGGTATTATTTTCCTTAATATTTGCAGCTTTTGTTAAGTCAATATGTAGGTCGCCAATTCCATGTTGAATTTGTACATCTTCCCACTTATATACATAAACTGCTGTACGTTGCTCACCAAACCACTTTTGt                                                                                                             <  2:202460/141‑1 (MQ=255)
                          cTAACAACAATGGTATTATTTAACACAATATTTGCAGCTTTTGTTAAGTCAATATGTAGGTCGCCAATTCCATGTTGAATTTGTACATCTTCCCACTTATATACATAAACTGCTGTACGTTGCTCACCAAACCACATTTGt                                                                                                             >  2:613876/1‑141 (MQ=255)
                               atcaaTGGTAGTATTTTCCGGAATACTTGCAGCTTTTGTTAATTCAATTTGTAGCTCGCCAATTCGACTTTGAATTTGTACATCTTCCGACTTATATACATAACCTTATGTACGCTGCTCACCAAACCACTTTTGTTtaat                                                                                                        <  2:246748/139‑1 (MQ=255)
                                   aTGGTATTATTTTCCTTAATATTTGCAGCTTTTGTTAAGTCAATATGTAGGTCGCCAATTCCATGTTGAATTTGTACATCTTCCCACTTATATACATAAACTGCTGTACGTTGCTCACCAAACCACTTTTGTTTAATaaaa                                                                                                    <  1:201810/141‑1 (MQ=255)
                                     ggTATTATTTTCCTTAATATTTGCAGCTTTTGTTAAGTCAATATGTAGGTCGCCAATTCCATGTTGAATTTGTACATCTTCCCACTTATATACATAAACTGCTGTACGTTGCTCACCAAACCACTTTTGTTTAATAAAAGa                                                                                                  >  1:142432/1‑141 (MQ=255)
                                      gTATTATTTTCCTTAATATTTGCAGCTTTTGTTAAGTCAATATGTAGGTCGCCAATTCCATGTTGAATTTGTACATCTTCCCACTTATATACATAAACTGCTGTACGTTGCTCACCAAACCACTTTTGTTTAATAAAAGAt                                                                                                 <  2:439838/141‑1 (MQ=255)
                                      gTATTATTTTCCTTAATATTTGCAGCTTTTGTTAAGTCAATATGTAGGTCGCCAATTCCATGTTGAATTTGTACATCTTCCCACTTATATACATAAACTGCTGTACGTTGCTCACCAAACCACTTTTGTTTAATAAAAGAt                                                                                                 <  1:152787/141‑1 (MQ=255)
                                      gTATTATTTTCCTTAATATTTGCAGCTTTTGTTAAGTCAATATGTAGGTCGCCAATTCCATGTTGAATTTGTACATCTTCCCACTTATATACATAAACTGCTGTACGTGTCGCACCAAACCACTTTTGTGTAATAAAAGAt                                                                                                 <  2:820545/141‑1 (MQ=255)
                                        attattTTCCTTAATATTTGCAGCTTTTGTTAAGTCAATATGTAGGTCGCCAATTCCATGTTGAATTTGTACATCTTCCCACTTATATACATAAACTGCTGTACGTTGCTCACCAAACCACTTTTGTTTAATAAAAGATgg                                                                                               >  1:74486/1‑141 (MQ=255)
                                        attattTTCCTTAATATTTGCAGCTTTTGTTAAGTCAATATGTAGGTCGCCAATTCCATGATGAATTTGTACATCTTCCCACTTATATACATAAACTGCTGTACGTTGCTCACCAAACCACTTTTGTTTAATAAAAGATgg                                                                                               >  2:202379/1‑141 (MQ=255)
                                          tattTTCCTGACTATCTGCAGCTTTTGTTAAGTCAATATGTAGGTCGCCAATGCCATGTTGAATTTGTACATCTTCCCACTTATATACATAAACTGCTGTACGTTGCTCACCAAACCTCTTTTGTTTAATAAAAGATGGTg                                                                                             <  2:234633/141‑1 (MQ=255)
                                              ttCCTTAATATTTGCAGCTTTTGTTAAGTCAATATGTAGGTCGCCAATTCCATGTTGAATTTGTACATCTTCCCACTTATATACATAAACTGCTGTACGTTGCTCACCAAACCACTTTTGTTTAATAAAAGATGGTGAAGt                                                                                         <  1:515842/141‑1 (MQ=255)
                                                ccTTAATATTTGCAGCTTTTGTTAAGTCAATATGTAGGTCGCCAATTCCATGTTGAATTTGTACATCTTCCCACTTATATACATAAACTGCTGTACGTTGCTCACCAAACCACTTTTGTTTAATAAAAGATGGTGAAGTCa                                                                                       >  2:600325/1‑141 (MQ=255)
                                                  ttAATATTTGCAGCTTTTGTTAAGTCAATATGTAGGTCGCCAATTCCATGTTGAATTTGTACATCTTCCCACTTATATACATAAACTGCTGTACGTTGCTCACCAAACCACTTTTGTTTAATAAAAGATGGTGAAGTCATa                                                                                     <  2:164618/141‑1 (MQ=255)
                                                     atatTTGCAGCTTTTGTTAAGTCAATATGTAGGTCGCCAATTCCATGTTGAATTTGTACATCTTCCCACTTATATACATAAACTGCTGTACGTTGCTCACCAAACCACTTTTGTTTAATAAAAGATGGTGAAGTCATAAcc                                                                                  >  1:523581/1‑141 (MQ=255)
                                                      tatTTGCAGCTTTTGTTAAGTCAAAATGCAGGTCGCCAATTCCATGTTGAATTTGTACATCTTCCCACTTATATACATAAACTGCTGTACGTTGCTCACCAAACCACTTTTGTTTAATAAAAGATGGTGAAGTCATAACCt                                                                                 >  1:556922/1‑141 (MQ=255)
                                                            cAGCTTTTGTTAAGTCAATATGTAGGTCGCCAATTCCATGTTGAATTTGTACATCTTCCCACTTATATACATAAACTGCTGTACGTTGCTCACCAAACCACTTTTGTTTAATAAAAGATGGTGAAGTCATAACCTCATCCg                                                                           <  1:345312/141‑1 (MQ=255)
                                                                  ttGTTAAGTCAATATTTAGGTCGCCAATTCCATGTTGAATTTGTACATCTTCCCACTTATATACATAAACTGCTGTACGTTGCTCACCAAACCACTTTTGTTTAATAAAAGATGGTGAAGTCATAACCTCATCCGTCGCaa                                                                     <  2:136359/141‑1 (MQ=255)
                                                                  ttGTTAAGTCAATATGTAGGTCGCCAATTCCATGTTGAATTTGTACATCTTCCCACTTATATACATAAACTGCTGTACGTTGCTCACCAAACCACTTTTGTTTAATAAAAGATGGTGAAGTCATAACCTCATCCGTCGCaa                                                                     <  2:843038/141‑1 (MQ=255)
                                                                   tGTTAAGTCAATATGTAGGTCGCCAATTCCATGTTGAATTTGTACATCTTCCCACTTATATACATAAACTGCTGTACGTTGCTCACCAAACCACTTTTGTTTAATAAAAGATGGTGAAGTCATAACCTCATCCGTCGCAac                                                                    <  1:142165/141‑1 (MQ=255)
                                                                    gTTAAGTCAATATGTAGGTCGCCAATTCCATGTTGAATTTGTACATCTTCCCACTTATATACATAAACTGCTGTACGTTGCTCACCAAACCACTTTTGTTTAATAAAAGATGGTGAAGTCATAACCTCATCCGTCGCAact                                                                   <  1:38208/141‑1 (MQ=255)
                                                                     ttAAGTCAATATGTAGGTCGCCAATTCCATGTTGAATTTGTACATCTTCCCACTTATATACATAAACTGCTGTACGTTGCTCACCAAACCACTTTTGTTTAATAAAAGATGGTGAAGTCATAACCTCATCCGTCGCAacta                                                                  <  2:735596/141‑1 (MQ=255)
                                                                     ttAAGTCAATATGTAGGTCGCCAATTCAATGTTGAATTTGTACATCTTCCCACTTATATACATAAACTGCTGTAAGTTGCTCACCAAACCACTTTTGTTTAATAAAAGATGGGTAAGGCATAACCTGATTCGTCGCacaga                                                                  >  1:81043/1‑137 (MQ=255)
                                                                      tAAGTCAATATGTAGGTCGCCAATTCCATGTTGAATTTGTACATCTTCCCACTTATATACATAAACTGCTGTACGTTGCTCACCAAACCACTTTTGTTTAATAAAAGATGGTGAAGTCATAACCTCATCCGTCGCAactac                                                                 <  1:62605/141‑1 (MQ=255)
                                                                        attCAATGTGTAGGTGGCCAATTCCATGTTGAATTTGTACATCTTCCCACTTATATACATAAACTGCTGTACGTTGCTCACCAAACCACTTTTGTTTAATATAAGATGGTGAAGTCATAACCTCATCCGTCGCAACTACtt                                                               <  2:753217/139‑1 (MQ=255)
                                                                        aggcAATATGTAGGTCGCCAATTCCATGTTGAATTTGTACATCTTCCCACTTATATACATAAACTGCTGTACGTTGCTCACCAAACCACTTTTGTTTAATAAAAGATGGTGAAGTCATAACCTCATCCGTCGCAACTACtt                                                               <  1:558652/138‑1 (MQ=255)
                                                                        aGTCAATATGTAGGTCGCCAATTCCATGTTGAATTTGTACATCTTCCCACTTATATACATAAACTGCTGTACGTTGCTCACCAAACCACTTTTGTTTAATAAAAGATGGTGAAGTCATAACCTCATCCGTCGCAACTACtt                                                               <  1:648372/141‑1 (MQ=255)
                                                                        aGTCAATATGTAGGTCGCCAATTCCATGTTGAATTTGTACATCTTCCCACTTATATACATAAACTGCTGTACGTTGCTCACCAAACCACTTTTGTTTAATAAAAGATGGTGAAGTCATAACCTCATCCGTCGCAACTACtt                                                               >  2:806914/1‑141 (MQ=255)
                                                                         gTCAATATGTAGGTCGCCAATTCCATGTTGAATTTGTACATCTTCCCACTTATATACATAAACTGCTGTACGTTGCTCACCAAACCACTTTTGTTTAATAAAAGATGGTGAAGTCATAACCTCATCCGTCGCAACTACttt                                                              >  2:505787/1‑141 (MQ=255)
                                                                          tCAATATGTAGGTCGCCAATTCCATGTTGAATTTGTACATCTTCCCACTTATATACATAAACTGCTGTACGTTGCTCACCAAACCACTTTTGTTTAATAAAAGATGGTGAAGTCATAACCTCATCCGTCGCAACTACtttt                                                             >  2:213645/1‑141 (MQ=255)
                                                                          tCAATATGTAGGTCGCCAATTCCATGTTGAATTTGTACATCTTCCCACTTATATACATAAACTGCTGTACGTTGCTCACCAAACCACTTTTGTTTAATAAAAGATGGTGAAGTCATAACCTAATCCGTCGCAACTACtttt                                                             >  1:395732/1‑141 (MQ=255)
                                                                            aaTATGTAGGTCGCCAATTCCATGTTGAATTTGTACATCTTCCCACTTATATACATAAACTGCTGTACGTTGCTCACCAAACCACTTTTGTTTAATAAAAGATGGTGAAGTCATAACCTCATCCGTCGCAACTACtttttt                                                           <  1:465144/141‑1 (MQ=255)
                                                                              tatGTAGGTCGCCAATTCCATGTTGAATTTGTACATCTTCCCACTTATATACATAAACTGCTGTACGTTGCTCACCAAACCACTTTTGTTTAATAAAAGATGGTGAAGTCATAACCTCATCCGTCGCAACTACTTTTTTTg                                                         >  1:528838/1‑141 (MQ=255)
                                                                                 gTAGGTCGCCAATTCCATGTTGAATTTGTACATCTTCCCACTTATATACATAAACTGCTGTACGTTGCTCACCAAACCACTTTTGTTTAATAAAAGATGGTGAAGTCATAACCTCATCCGTCGCAACTACTTTTTTTGGtt                                                      <  2:337728/141‑1 (MQ=255)
                                                                                   aGGTCGCCAATTCCATGTTGAATTTGTACATCTTCCCACTTATATCCATAAACTGCTGTAAGTTGCTCACCACACCACTTTTGTTTAATAAAAGATGGTGAAGTCATAACATAATCAGTCGAACCTACTTTTTTTGGTTTa                                                    >  2:421712/1‑141 (MQ=255)
                                                                                    ggTCGCCAATTCCATGTTGAATTTGTACATCTTCCCACTTATATACATAAACTGCTGTACGTTGCTCACCAAACCACTTTTGTTTAATAAAAGATGGTGAAGTCATAACCTCATCCGTCGCAACTACTTTTTTTGTTTTaa                                                   >  2:584913/1‑141 (MQ=255)
                                                                                     gTCGCCAATTCCATGTTGAATTTGTACATCTTCCCACTTATATACATAAACTGCTGTACGTTGCTCACCAAACCACTTTTGTTTAATAAAAGATGGTGAAGTCATAACCTCATCCGTCGCAACTACTTTTTTTGGTTTaaa                                                  >  1:698649/1‑141 (MQ=255)
                                                                                      ccGCCAATTCCATGTTGAATTTGTACATCTTCCCACTTATATACATAAACTGCTGTACGTTGCTCACCAAACCACTTTTGTTTAATAAAAGATGGTGAAGTCATAACCTCATCCGTCGCAACTACTTTTTTTGGTTTAAAc                                                 <  2:649776/140‑1 (MQ=255)
                                                                                        gCCAATTCCATGTTGAATTTGTACATCTTCCCACTTATATACATAAACTGCTGTACGTTGCTCACCAAACCACTTTTGTTTAATAAAAGATGGTGAAGTCATAACCTCATCCGTCGCAACTACTCTTTTTGGTTTAAACtt                                               >  2:747846/1‑141 (MQ=255)
                                                                                        gCCAATTCCATGTTGAATTTGTACATCTTCCCACTTATATACATAAACTGCTGTACGTTGCTCACCAAACCACTTTTGTTTAATAAAAGATGGTGAAGTCATAACCTCATCCGTCGCAAATACTTTTTTTGTTTTAAACtt                                               >  2:680795/1‑141 (MQ=255)
                                                                                         ccAATTCCATGTTAAATTTGTACATCTTCCCACTTATATACATAAACTGCTATACGTTGCTCACCAAACCACTTTTGTTTAATAAAAGATGGTGAAGTCATACACTCATCGGTGGCAACTACTTGCTTTgagttcacatat                                              >  2:706145/1‑130 (MQ=255)
                                                                                             tttcattgtGATTTTGTACATCTTCCCACTTATATACATAAACTGATGGACGTTGCTCACCAAACCACTTTTGTTGAATTAAAGATTGTGAAGTCATAACCTCATCCGTCGCAACTACTTTTTTTGGTTTAAACTGGTGTa                                          <  2:15683/133‑1 (MQ=255)
                                                                                             ttCCATGTTGAATTTGTACATCTTCCCACTTATATACATAAACTGCTGTACGTTGCTCACCAAACCACTTTTGTTTAATAAAAGATGGTGAAGTCATAACCTCATCCGTCGCAACTACTTTTTTTGGTTTAAACTTGTGTa                                          <  1:264931/141‑1 (MQ=255)
                                                                                             ttCCATGTTGAATTTGTACATCTTCCCACTTATATACATAAACTGCTGTACGTTGCTCACCAAACCACTTTTGTTTAATAAAAGATGGTGAAGTCATAACCTCATCCGTCGCAACTACTTTTTTTGGTTTAAACTTGTGTa                                          <  1:343846/141‑1 (MQ=255)
                                                                                             ttCCACGTTGAATTTGTACATCTTCCCACTTATATACATAAACTGCTGTACGTTGCTCACCAAACCACTTTTGTTTAATAAAAGATGGTGAAGTCATAACCTCATCCGTCGCAACTACTTTTTTTGGTTTAAACTTGTGTa                                          <  1:317781/141‑1 (MQ=255)
                                                                                               ccATGTTGAATTTGTACATCTTCCCACTTATATACATAAACTGCTGTACGTTGCTCACCAAACCACTTTTGTTTAATAAAAGATGGTGAAGTCATAACCTCATCCGTCGCAACTACTTTTTTTGGTTTAAACTTGTGTAtt                                        >  1:523424/1‑141 (MQ=255)
                                                                                                cATGTTGAATTTGTACATCTTCCCACTTATATACATAAACTGCTGTACGTTGCTCACCAAACCACTTTTGTTTAATAAAAGATGGTGAAGTCATAACCTCATCCGTCGCAACTACTTTTTTTGGTTTAAACTTGTGTATTa                                       <  1:831986/141‑1 (MQ=255)
                                                                                                  tGTTGAATTTGTACATCTTCCCACTTATATACATAAACTGCTGTACGTTGCTCACCAAACCACTTTTGTTTAATAAAAGATGGTGAAGTCATAACCTCATCCGTCGCAACTACTTTTTTTGGTTTAAACTTGTGTATTaaa                                     <  1:269003/141‑1 (MQ=255)
                                                                                                  tGTTGAATTTGTACATCTTCCCACTTATATACATAAACTGCTGTACGTTGCTCACCAAACCACTTTTGTTTAATAAAAGATGGTGAAGTCATAACCTCATCCGTCGCAACTACTTTTTTTGGTTTAAACTTGTGTATTaaa                                     >  2:616035/1‑141 (MQ=255)
                                                                                                      gAATTTGTACATCTTCCCACTTATATACATAAACTGCTGTACGTTGCTCACCAAACCACTTTTGTTTAATAAAAGATGGTGAAGTCATAACCTCATCCGTCGCAACTACTTTTTTTGGTTTAAACTTGTGGATTAAATAAc                                 >  1:798755/1‑141 (MQ=255)
                                                                                                       aaTTTGTACATCTTCCCACTTATATACATAAACTGCTGTACGTTGCTCACCAATCCACTTTTGTTTAATAAAAGATGGTGAAGTCATAACCTCATCCGTCGCAACTACTTTTTTTGGTTTAAACTTGTGTATTAAATAACg                                <  1:710766/141‑1 (MQ=255)
                                                                                                        aTTTGTACATCTTCCCACTTATATACATAAACTGCTGTACGTTGCTCACCAAACCACTTTTGTTTAATAAAAGATGGTGAAGTCATAACCTCATCCGTCGCAACTACTTTTTTTGGTTTAAACTTGTGTATTAAATAACGc                               >  2:543117/1‑141 (MQ=255)
                                                                                                            gTACATCTTCCCACTTATATACATAGACTGATGTGCGTTGCTCACTAGACGTCTTTTGTTTAATAAAAGATGGTGAAGTCATAACCTCATCCGTCGAGACTACTTTTTTTGGTTTAAACTTGTGTATTAAATAAGGcacgt                           >  2:636031/1‑139 (MQ=255)
                                                                                                                 tCTTCCCACTTATATACATAAACTGCTGTACGTTGCTCACCAAACCACTTTTGTTTAATAAAAGATGGTGAAGTCATAACCTCATCTGTCGCAACTACTTTTTTTGGTTTAAACTTGTGTATTAAATAACGCACAATAAGt                      <  1:577106/141‑1 (MQ=255)
                                                                                                                 tCTTCCCACTTATATACATAAACTGCTGTACGTTGCTCACCAAACCACTTTTGTTTAATAAAAGATGGTGAAGTCATAACCTCATCCGTCGCAACTACTTTTTTTGGTTTAAACTTGTGTATTAAATAACGCACAATAAGt                      >  2:692544/1‑141 (MQ=255)
                                                                                                                 tCTTCCCACTTATATACATAAACTGCTGTACGTTGCTCACCAAACCACTTTTGTTTAATAAAAGATGGTGAAGTCATAACCTAATCCGTCGCAACTACTTTTTTTGGTTTAAACTTGTGTATTAATTAACGCACAATAAga                      >  2:34217/1‑140 (MQ=255)
                                                                                                                  cTTCCCACTTATATAAATAAACTGCTGTACGTTGCTCACCAAACCACTTTTGTTTAATAAAAGATGGTGAAGTCATAACCTCATCCGTCGCAACTACTTTTTTTGGTTTAAACTTGTGTATTAAATAACGCACAATAAGta                     <  1:864415/141‑1 (MQ=255)
                                                                                                                      ccACTTATATACATAAACTGCTGTACGTTGCTCACCAAACCACTTTTGTTTAATAAAAGATGGTGAAGTCATAACCTCATCCGTCGCAACTACTTTTTTTGGTTTAAACTTGTGTATTAAATAACGCACACTAAGtaataa                 >  2:851821/1‑141 (MQ=255)
                                                                                                                            atataCATAAACTGCTGTACGTTGCTCACCAAACCACTTTTGTTTAATAAAAGATGGTGAAGTCATAACCTCATCCGTCGCAACTACTTTTTTTGGTTGAAGCTTGTGTATTAAATAACGCACAATAAGTAATAATaaaaa           >  2:319742/1‑141 (MQ=255)
                                                                                                                                    aaaCTGCTGTACGTTGCTCACCAAACCACTTTTGTTTAATAAAAGATGGTGAAGTCATAACCTCATCCGTCGCAACTACTTTTTTTGGTTTAAACTTGTGTATTAAATAACGCACAATAAGTAATAATAAAAAGACGAACa   <  1:505787/141‑1 (MQ=255)
                                                                                                                                     aaCTGCTGTACGTTGCTCACCAAACCACTTTTGTTTAATAAAAGATGGTGAAGTCATAACCTCATCCGTCGCAACTACTTTTTTTGGTTTAAACTTGTGTATTAAATAACGCACAATAAGTAATAATAAAAAGACGAACaa  >  1:806836/1‑141 (MQ=255)
                                                                                                                                          |                                                                                                                                       
TAACCTGCACTTTACCTAAAATGTGTCTAACAACAATGGTATTATTTTCCTTAATATTTGCAGCTTTTGTTAAGTCAATATGTAGGTCGCCAATTCCATGTTGAATTTGTACATCTTCCCACTTATATACATAAACTGGTGTACGTTGCTCACCAAACCACTTTTGTTTAATAAAAGATGGTGAAGTCATAACCTCATCCGTCGCAACTACTTTTTTTGGTTTAAACTTGTGTATTAAATAACGCACAATAAGTAATAATAAAAAGACGAACAA  >  CP000730/2028131‑2028404

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑

GATK/CNVnator alignment

N/A