Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A23 F20 I0 R1 95 76.5 1681216 93.1% 1565212 141.0

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation freq annotation gene description
RA CP000730 2,455,692 Δ1 bp 100% coding (1210/1260 nt) USA300HOU_2315 → hypothetical membrane protein

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*CP0007302,455,6920G.77.0% 199.5 / 64.4 78coding (1210/1260 nt)USA300HOU_2315hypothetical membrane protein
Reads supporting (aligned to +/- strand):  ref base G (0/1);  major base . (29/31);  minor base A (11/2);  total (43/35)
Fisher's exact test for biased strand distribution p-value = 2.89e-02
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.89e-01
Rejected as polymorphism: Polymorphic indel expands or contracts a homopolymer stretch.

AGCAGAATCAGTTAAACAAGCACCACAAAGTGACGATTTAACAAACGATTCAAATGAAGATGAAATAGAGCAATCATTAAAAGAACCTGCGACTTATAAAGAAGACAGACGTTCATCAGTTGTAATTGATGCAGAAAAACATATCG‑AAAAAACTGAAGAACAATCTTCAGATAAAAACAAATAATAACAAAGCGCTTGCTAGTACCTCTTAAAAAGATGATGCTAGCAAGCGCTTTTCTATACTATATATTATTTTTCTAAAATTT  >  CP000730/2455559‑2455824
                                                                                                                                     |                                                                                                                                     
agcatAATCAGTTAAACAAGCACCACAAAGTGACGATTTAACAAACGATTCAAAGGAAGATGAAATAGAGCAATCATTAAAAGAACCTGCGACTTATAAAGAAGACAGACGTTCATCAGTTGTAATTGATGCAaaaaaatt                                                                                                                                <  1:263058/141‑3 (MQ=255)
agcagAATCAGTTAAACAAGCACCACAAAGTGACGATTTAACAAACGATTCAAATGAAGATGAAATAGAGCAATCATTAAAAGAACCTGCGACTTATAAAGAAGACAGACGTTCATCAGTTGTAATTGATGCAaaaaaatt                                                                                                                                <  1:792002/141‑3 (MQ=255)
    gAATCAGTTAAACAAGCACCACAAAGTGACGATTTAACAAACGATTCAAATGAAGATGAAATAGAGCAATCATTAAAAGAACCTGCGACTTATAAAGAAGACAGACGTTCATCAGTTGTAATTGATGCAaaaaaattatcg                                                                                                                            <  1:490024/141‑7 (MQ=255)
    gAATCAGTTAAACAAGCACCACAAAGTGACGATTGAACAAACGATTCAAATGAAGATGAAATAGAGCAATCATTAAAAGAACCTGCGACTTATAAAGAAGACAGACGTTCATCAGTTGTAATTGATGCAaaaaaattatcg                                                                                                                            >  2:592686/1‑135 (MQ=255)
    gAAACAGTTAAACAAGCACCACAAAGTGACGATTTAACAAACGATTCAAATGAAGATGAAATAGAGCAATCATTAAAAGAACCTGCGACTTATAAAGAAGACAGACGTTCATCAGTTGTAATTGATGCAaaaaaattatcg                                                                                                                            <  1:284247/141‑7 (MQ=255)
    aaaTCAGTTAAACAAGCACCACAAAGTTACGATTTAACAAACGATTCAAATGAAGATGAAATAGAGCAATCATTAAAAGAACCTGCGACTTATAAAGAAGACAGACGTTCATCAGTTGTAATTGATGCAaaaaaattatcg                                                                                                                            <  1:382362/140‑7 (MQ=255)
     aaTCAGTTAAACAAGCACCACAAAGTGACGATTTAACAAACGATTCAAATGAAGATGAAATAGAGCAATCATTAAAAGAACCTGCGACTTATAAAGAAGACAGACGTTCATCAGTTGTAATTGATGCAaaaaaattatcga                                                                                                                           >  1:692060/1‑134 (MQ=255)
       tCAGTTAAACAAGCACCACAAAGTGACGATTTAACAAACGATTCAAATGAAGATGAAATAGAGCAATCATTAAAAGAACCTGCGACTTATAAAGAAGACAGACGTTCATCAGTTGTAATTGATGCA‑AAAAAATTATCG‑aaa                                                                                                                       <  1:761292/141‑1 (MQ=255)
         aGTTAAACAAGCACCACAAAGTGACGATTTAACAAACGATTCAAATGAAGATGAAATAGAGCAATCATTAAAAGAACCTGCGACTTATAAAGAAGACAGACGTTCATCAGTTGTAATTGATGCAACAAAAC‑TATCG‑aaaaa                                                                                                                     >  1:714826/1‑141 (MQ=255)
             aaaCAAGCACCACAAAGTGACGATTTAACAAACGATTCAAATGAAGATGAAATAGAGCAATCATTAAAAGAACCTGCGACTTATAAAGACGACAGACGTTCATCAGTTGAAATT‑CTGGCGAATAAATTATCG‑AAAAAACTg                                                                                                                 <  2:593979/141‑1 (MQ=255)
             aaaCAAGCACCACAAAGTGACGATTTAACAAACGATTCAAATGAAGATGAAATAGAGCAATCATTAAAAGAACCTGCGACTTATAAAGAAGACAGACGTTCATCAGTTGTAATTGATGCA‑AAAAAATTATCG‑AAAAAACTg                                                                                                                 >  1:807011/1‑141 (MQ=255)
             aaaCAAGCACCACAAAGTGACGATTTAACAAACGATTCAAATGAAGATGAAATAGAGCAATCATTAAAAGAACCTGCGACTTATAAAGAAGACAAACGTTCATCAGTTGTAATTGATGCA‑AAAAAATTATCG‑AAAAAACTg                                                                                                                 >  2:70219/1‑141 (MQ=255)
              aaCAAGCACCACAAAGCGTCGTTGTAACAAACGATTCAAATGAAGATGAAATAGAGCAATCATTAAAAGAACCTGCGATTTATAAAGAAGACAGACGTTCATCAGTTGTAATTGATGCA‑AAAAAATTATCG‑AAAAAACTga                                                                                                                <  1:491548/141‑1 (MQ=255)
                cAAGCACCACAAAGTGACGATTTAACAAACGATTCAAATGAAGATGAAATAGAGCAATCATTAAAAGAACCTGCGACTTATAAAGAAGACAGACGTTCATCAGTTGTAATTGATGCA‑AAAAAATTATCG‑AAAAAACTgaag                                                                                                              >  2:832887/1‑141 (MQ=255)
                 aaGCACCACAAAGTGACGATTTAACAAACGATTCAAATGAAGATGAAACAGAGCAAGCATTAAAAGAACCTGCGACTTATAGAGAAGACAGACGTTCATCAGTTGTAATTGATGCA‑AAAAAATTATCG‑AAAAAACTgaaga                                                                                                             <  1:618632/141‑1 (MQ=255)
                  aGCACCACAAAGTGACGATTTAACAAACGATTCAAATGAAGATGAAATAGAGCAATCATTAAAAGAACCTGCGACTTATAAAGAAGACAGACGTTCATCAGTTGTAATTGATGCA‑AAAAAATTATCG‑AAAAAACTgaagaa                                                                                                            >  1:205754/1‑141 (MQ=255)
                   acaccacAAAGTGACGATTTAACAAACGATTCAAATGAAGATGAAATAGAGCAATCACTAAAAGAACCTGCGACTTATAAAGAAGACAGACGTTCATCAGTTGTAATTGATTCA‑AAAAAATTATCG‑AAAAAACTGAAGAAc                                                                                                           <  2:94948/140‑1 (MQ=255)
                        aaaaaGTTACGAATTACCTAACGAATAAAAATAAGATGAAATAGAGCAATTATTAAAAGAAATTGCGACTTAAAAAGAATACAGACGTTCATCAGTTGTAAAAAAAAAA‑AAAAAATTATCG‑AAAAAACTGAAGAACAATCt                                                                                                      <  2:653521/139‑1 (MQ=255)
                          aaaGTGACGATTTAACAAACGATTCAAATGAAGATGAAATAGAGCAATCATTAAAAGAACCTGCGACTTATAAAGAAGACAGACGTTCATCAGTTGTAATTGATGCA‑AAAAAATTATCG‑AAAAAACTGAAGAACAATCTTc                                                                                                    <  1:656697/141‑1 (MQ=255)
                            atcgACGATTCAACAAACAAAACAAACAAAGATGAAAGAGCGCAATCATTAAAAGAACCTACGACTTAAAAAAAATACAGACGTTCATCAGTTGAAAAAAAAAAA‑AAAAAATTATCG‑AAAAAACTGAAGAACAATCTTCAg                                                                                                  <  2:767694/138‑1 (MQ=255)
                                  gATTTAACAAACGATTCAAATGAAGATGAAATAGAGCAATCATTAAAAGAACCTGCGACTTATAAAGAAGACAGACGTTCATCAGTTGTAATTGATGCAAAAAAA‑TTATCG‑AAAAAACTGAAGAACAATCTTCAGATaaaa                                                                                            >  2:833793/1‑141 (MQ=255)
                                  gATTTAACAAACGATTCAAATGAAGATGAAATAGAGCAATCATTAAAAGAACCTGCGACTTATAAAGAAGACAGACGTTCATCAGTTGTAATTGATGCA‑AAAAAATTATCG‑AAAAAACTGAAGAACAATCTTCAGATaaaa                                                                                            >  2:601247/1‑141 (MQ=255)
                                   aTTTAACAAACGATTCAAATGAAGATGAAATAGAGCAATCATTAAAAGAACCTGCGACTTATAAAGAAGACAGCAGAATGGCATCTTTAATTGATGCA‑AAAAAATTATCG‑AAAAAACTGAAGAACAATCTTCAGATaaaaa                                                                                           >  1:823350/1‑141 (MQ=255)
                                   aTTTAACAAACGATTCAAATGAAGATGAAATAGAGCAATCATTAAAAGAACCTGCGACTTATAAAGAAGACAGACGTTCATCAGTTGTAATTGATGCA‑AAAAAATTATCG‑AAAAAACTGAAGAACAATCTTCAGATaaaaa                                                                                           >  1:182089/1‑141 (MQ=255)
                                        aCAAACGATTCAAATGAAGATGAAATAGAGCAATCATTAAAAGAACCTGCGACTTATAAAGAAGACAGACGTTCATCAGTTGTAATTGATGCA‑AAAAAATTATCG‑AAAAAACTGAAGAACAATCTTCAGATAAAAACgaaa                                                                                      >  2:589076/1‑140 (MQ=255)
                                           aaCGATTCAAATGAAGATGAAATAGAGCAATCATTAAAAGAACCTGCGACTTATAAAGAAGACAGACGTTCATCAGTTGTAATTGATGCA‑AAAAAATTATCG‑AAAAAACTGAAGAACAATCTTCAGATAAAAACAaataat                                                                                   <  1:674119/141‑1 (MQ=255)
                                              gATTCAAATGAAGATGAAATAGAGCAATCATTAAAAGAACCTGCGACTTATAAAGAAGACAGACGTTCATCAGTTGTAATTGATGCA‑AAAAA‑TTATCGAAAAAAACTGAAGAACAATCTTCAGATAAAAACAAATAATAAc                                                                                <  1:810622/141‑1 (MQ=255)
                                                   aaaTGAAGATGAAATAGAGCAATCATTAAAAGAACCTGCGACTTATAAAGAAGACAGACGTTCATCAGTTGTAATTGATGCACAAAAA‑TTATCG‑AAAAAACTGAAGAACAATCTTCAGATAAAAACAAATAATAACAAAgc                                                                           >  2:648872/1‑141 (MQ=255)
                                                    aaTGAAGATGAAATAGAGCAATCATTAAAAGAACCTGCGACTTATAAAGAAGACAGACGTTCATCAGTTGTAATTGATGCA‑AAAAAATTATCG‑AAAAAACTGAAGAACAATCTTCAGATAAAAACAAATAATAACCAAgcg                                                                          >  1:82026/1‑141 (MQ=255)
                                                    aaTGAAGATGAAATAGAGCAATCATTAAAAGAACCTGCGACTTATAAAGAAGACAGACGTTCATCAGTTGTAATTGATGCA‑AAAAAATTATCG‑AAAAAACTGAAGAACAATCTTCAGATAAAAACAAATAATAACAAAgcg                                                                          <  1:110022/141‑1 (MQ=255)
                                                     aTGAAGATGAAATAGAGCAATCATTACAAGAACCTGCGACTTATAAAGAAGACAGACGATCATCAGTTGTAATTGATGCA‑AGAAAATTATAG‑AAAAAACTGAGGAAAAAACTTCAGATAAAAACCAAAAATAACAAAgccc                                                                         >  2:295378/1‑139 (MQ=255)
                                                        aaGATGAAATAGAGCAATCATTAAAAGAACCTGCGACTTATAAAGAAGACAGACGTTCATCAGTTGTAATTGATGCA‑AAAAAATTATCG‑AAAAAACTGAAGAACAATCTTCAGATAAAAACAAATAATAACAAACCGCTTg                                                                      <  2:462410/141‑1 (MQ=255)
                                                         aGATGAAATAGAGCAATCATTAAAAGAACCTGCGACTTATAAAGAAGACAGACGTTCATCAGTTGTAATTGATGCA‑AAAAAATTATCG‑AAAAAACTGAAGAACAATCTTCATATGAAAACAAATAATAACAAAGCGCTTgg                                                                     >  1:56223/1‑140 (MQ=255)
                                                           aTGAAATAGAGCAATCATTAAAAGAACCTGCGACTTATAAAGAAGACAGACGTTCATCAGTTGTAATTGATGCA‑AAAAAATTATCG‑AAAAAACTGAAGAACAATCTTCGGATAAAAACAAATAATAACAAAGCGCTTGCTa                                                                   <  2:205754/141‑1 (MQ=255)
                                                           aTGAAATAGAGCAATCATTAAAAGAACCTGCGACTTATAAAGAAGACAGACGTTCATCAGTTGTAATTGATGCA‑AAAAAATTATCG‑AAAAAACTGAAGAACAATCTTCAGATAAAAACAAATAATAACAAAGCGCTTGCTa                                                                   <  2:140085/141‑1 (MQ=255)
                                                            tGAAATAGAGCAATCATTAAAAGAACCTGCGACTTATAAAGAAGACAGACGTTCATCAGGTGTAATTGATGCA‑AAAAAATTATCG‑AAAAAACTGCAGAACAATCTTCAGATAAAAACAAATAATAACAAAGAGCATGCTAg                                                                  >  2:434183/1‑141 (MQ=255)
                                                            tGAAATAGAGCAATCATTAAAAGAACCTGCGACTTATAAAGAAGACAGACGTTCATAAGTTGTAATTGATGCA‑AAAAAAGTATCG‑AAAAAACTGAAGAACAATCTTCAGATAAAAACAAATAATAACAAAACGCATGCTaa                                                                  >  2:486811/1‑140 (MQ=255)
                                                                aTAGAGCAATCATTAAAAGAACCTGCGACTTATAAAGAAGACAGAAGCTCATCAGTTGTAATGGATGCAAAAAAA‑GGATCG‑AAAAAACTGAAGAACAATCTTCAGATAAAAACAAATAATAACAAAGCGCTTGCTGGTAcc                                                              >  1:166105/1‑141 (MQ=255)
                                                                   gagCAATCATTAAAAGAACCTGCGACTTATAAAGAAGACAGACGTTCATCAGTTGTAATTGATGCA‑AAAAAATTATCG‑AAAAAACTGAAGAACAATCTTCAGATAAAAACAAATAATAACAAAGCGCTTGCTAGTACctct                                                           <  1:597198/141‑1 (MQ=255)
                                                                   gagCAATCATTAAAAGAACCTGCGACTTATAAAGAAGACAGACGTTCATCAGTTGTAATTGATGCA‑AAAAAATTATCG‑AAAAAACTGAAGAACAATCTTCAGATAAAAACAAATAATAACAAAGCGCTTGCTAGTACctct                                                           >  2:526276/1‑141 (MQ=255)
                                                                    agCAATCATTAAAAGAACCTGCGACTTATAAAGAAGACAGACGTTCATCAGTTGTAATTGATGCA‑AAAAAATTATCG‑AAAAAACTGAAGAACAATCTTCAGATAAAAACAAATAATAACAAAGCGCTTGCTAGTACCTCtt                                                          <  1:234514/141‑1 (MQ=255)
                                                                     gCAATCATTAAAAGAACCTGTGACTTATAAAGAAGACAGACGTTCATCAGTTGTAATTGATGCAAAAAAA‑TTATCG‑AAAAAACTGAAGAACAATCTTCAGATAAAAACAAATAATAACAATGCGCCTGCTAGTACCTCGTa                                                         >  1:312989/1‑141 (MQ=255)
                                                                     gCAATCATTAAAAGAACCTGCGACTTATAAAGAAGACAGACGTTCATCAGTTGTAATTGATGCAAAAAAA‑TTATCG‑AAAAAACTGAAGAACAATCTTCAGATAAAAACAAATAATAACAAAGCGCTTGCTAGTACCTCTTa                                                         >  2:58024/1‑141 (MQ=255)
                                                                        aTCATTAAAAGAACCTGCGACTTATAAAGAAGACAGACGTTCATCAGTTGTAATTGATGCA‑AAAAAATTATCG‑AAAAAACTGAAGAACAATCTTCAGATAAAAACAAATAATAACAAAGCGCTTGCTAGTACCTCTTaaaa                                                      <  1:144533/141‑1 (MQ=255)
                                                                        aTCATTAAAAGAACCTGCGACTTATAAAGAAGACAGACGTTCAGCAGTTGTAATTGATGCA‑AAAAAATTATCG‑AAAAAACTGAAGAACAATCTTCAGATAAAAACAAATAATAACAAAGCGCTTGCTAgcatcatcttttt                                                      <  2:393405/141‑13 (MQ=255)
                                                                        aTCAGTAAAAGGACCTGCGACTTATAAAGAAGACAGACGTTCATCAGTTGTAATTGATACA‑AAAAAATTATCG‑AAAAAACTGAAGAACAATCTTCAGATAAAAACAAATAATAACAAAGCGCTTGCTAGTACCTCTTaaaa                                                      <  2:602030/141‑1 (MQ=255)
                                                                         tCATTAAAAGAACCTGCGACTTATAAAGAAGACAGACGTTCATCAGTTGTAATTGATGCA‑AAAAAATTATCG‑AAAAAACTGAATAACAGGCTTCAGATAAAAACAAATAATAACAAAGCGCTTGCTAGTACCTCTTaaaaa                                                     >  1:821815/1‑141 (MQ=255)
                                                                           aTTAAAAGAACCTGCGACTTATAAAGACGACAGACGTTCATCAGTTGTAATTGATGCA‑AAAAAATTATCG‑AAAAAACTGAAGAACAATCTTCAGATAAAAACAAATAATAACCAAGCGCTTGCTGGTACCACATAAAAAga                                                   >  2:450013/1‑141 (MQ=255)
                                                                            ttAAAAGAACCTGCGACTTATAAAGAAGACAGACGTTCATCAGTTGTAATTGATGCAAAAAAA‑TTATCG‑AAAAAACTGAAGAACAATCTTCAGATAAAAACCAATAATAACAAAGCGATTGCTAGTACATCTTAAAAAgag                                                  >  2:499758/1‑140 (MQ=255)
                                                                            ttAAAAGAACCTGCGACTTATAAAGAAGACAGACGTTCATCAGTTGTAATTGATGCAAAAAAA‑TTATCG‑AAAAAACTGAAGAACAATCTTCAGATAAAAACAAATAATAACAAAGCGCTTGCTAGTCCCTCTTAAAAAgat                                                  >  2:271792/1‑141 (MQ=255)
                                                                            ttAAAAGAACCTGCGACTTATAAAGAAGACAGACGTTCATCAGTTGTAATTGATGCA‑AAAAAATTATCG‑AAAAAACTGAAGAACAATCTTCAGATAAAAACAAATAATAACAAAGCGCTTGCTAGTACCTCTTAAAAAgat                                                  >  1:643733/1‑141 (MQ=255)
                                                                            ttAAAAGAACCTGCGACTTATAAAGAAGACAGACGTTCATCAGGTGTAATCGATGCA‑AAAAAATTATCG‑AAAAAACTGAAGAACAATCCTCAGATAAAAACAAATAATACCAAAGCGCTCGCTAGTACCTCTTaacaaaaa                                                  >  2:187055/1‑138 (MQ=255)
                                                                                  gAACCGGCAGCTTATAAATAAGACAGACGTTCATCAGGTGTAATTGATGCA‑AAAAAATTATCG‑AAAAAACTGAAGAACAATCTTCAGATAAAAACAAATAATAACAAAGCGCTTGCTAGTACCTCTTAAAAAGATGATGCt                                            <  2:696823/141‑1 (MQ=255)
                                                                                    aCCTGCGACTTATAAAGAAGACATACGTTCAGCAGTTGTAATTGATGCACAAAAA‑TTATCG‑AAAAAACTGAAGAACAATCTTCAGATAAAAACAAATAATAACAAAGCGCTTGCTAGTACCTCTTAAAAAGATGATTCTAg                                          <  2:508202/141‑1 (MQ=255)
                                                                                      cTGCGACTTGTAAAGAAGACAGACGTTCATCAGTTGTAATTGATGCA‑AAAAAATTATCG‑AAAAAACTGAAGAACAATCTTCAGATAAAAACAAATAATAACAAAGCGCTTGCTAGTACCTCTTAAAAAGATGATGCTAGCa                                        <  2:135175/141‑1 (MQ=255)
                                                                                      cTGCGACTTATAAAGAAGACAGACGTTCATCAGTTGTAATTGATGCAAAAAAA‑TTATCG‑AAAAAACTGAAGAACAATCTTCAGATAAAAACAAATAATAACAAAGCGCTTGCTAGTACCTCTTAAAAAGATGATGCTAGCa                                        <  1:601247/141‑1 (MQ=255)
                                                                                      cTGCGACTTATAAAGAAGACAGACGTTCATCAGTTGTAATTGATGCA‑AAAAAATTATCG‑AAAAAACTGAAGAACAATCTTCAGATAAAAACAAATAATAACAAAGCGCTTGCTAGTACCTCTTAAAAAGATGATGCTAGCa                                        <  1:833793/141‑1 (MQ=255)
                                                                                       ttggtctgataaataaAACAGACGTGCATCAGTTGTAATTGATGCA‑AAAAAATTATCG‑AAAAAACTGAAGAACAATCTTCAGATAAAAACAAATAATAACAAAGCGCTTGCTAGTACCTCTTAAAAAGATGATGCTAGCaa                                       <  2:205562/133‑1 (MQ=255)
                                                                                       tGCGACTTATAAAGAAGACAGACGTTCATCAGTTGTAATTGATGCA‑AAAAAATTATCG‑AAAAAACTGAAGAACAATCTTCAGATAAAAACAAATAATAACAAAGCGCTTGCTAGTACCTCTTAAAAAGATGATGCTAGCaa                                       <  1:70219/141‑1 (MQ=255)
                                                                                       tGCGACTCATAAAGAAGACAGACGTTCATCAGTTGTAATTGATGTA‑AAAAAATTATCG‑AAAAAACTGAAGAACAATCTTCAGATAAAAACAAATAATAACAAAGCGCTTGCTAGTACCTCTTAAAAAGATGATGCTAACaa                                       >  2:589469/1‑141 (MQ=255)
                                                                                       tGCGAATTATAAAGAAGACAGACGTTCATCAGTTGTAATTGATGCA‑AAAAAATTATCG‑AAAAAACTGAAGAACAATCTTCAGATAAAAACAAATAATAACAACGCGCTTGCTCAAGTCCGTTATTAAGATGATGCTAGCaa                                       <  2:385452/141‑1 (MQ=255)
                                                                                        gCGACTTATAAAGAAGACAGACGTTCATCAGTTGTAATTGATGCA‑AAAAAATTATCG‑AAAAAACTGAAGAACAATCTTCAGATAAAAACAAATAATAACAAAGCGCTTGCTAGTACCTCTTATAAAGATGATGCTAGCAAg                                      >  1:777329/1‑141 (MQ=255)
                                                                                         cGACTTATAAAGAAGACAGACGTTCATCAGTTGTAATTGATGCA‑AAAAAATTATCG‑AAAAAACTGAAGAACAATCTTCAGATAAAAACAAATAATAACAAAGCGCTTGCTAGTACCTCTTAAAAAGATGATGCTAGCAAgc                                     <  1:681894/141‑1 (MQ=255)
                                                                                         cGACTTATAAAGAAGACAGACGTTCATCAGTTGTAATTGATGCA‑AAAAAATTATCG‑AAAAAACTGAAGAACAATCTTCAGATAAAAACAAATAATAACAAAGCGCTTGCTAGTACCTCTTAAAAAGATGATGCTAGCAAgc                                     >  2:799925/1‑141 (MQ=255)
                                                                                           aCTTATAGAGAACACAGACGTTCATCAGTTCTCATTGA‑GTTAATTAAATTATCG‑AAAAAACTGAAGAACAATCTTCAGATAAAAACAAATAATAACAAAGCGCTTGCTAGTATCTTTTAAATAGATGATGCTAGCACgcgc                                   <  2:174058/141‑1 (MQ=255)
                                                                                           aCTTATAAAGAAGACAGACGTTCATCAGTTGTAATTGATGCAAAAAAA‑TTATCG‑AAAAAACTGAAGAACAATCTTCAGATAAAAACAAATAATAACAAAGCGCTTGCTAGTACCTCTTAAAAAGATGATGCTAGCAAgcgc                                   >  1:217117/1‑141 (MQ=255)
                                                                                               ataAAGAAGACAGACGTTCATCAGTTGTAATTGATGCAAAAAAA‑TTATCG‑AAAAAACTGAAGAACAATCTTCAGATAAAAACAAATAATAACAAAGCGCCTGCTAGTACCTCTTAAAAGGATGATGCTAGCAAGCGAtttt                               >  2:662821/1‑141 (MQ=255)
                                                                                                taAAGAAGACAGACGTCCATCAGTTGTAATTGATGCA‑AAAAAATTATCG‑AAAAAACTGAAGAACAATCTTCAGATAAAAACAAATAATAACAAAGCGCTTGCTAGTACCTCTTAAAAAGATGATGCTAGCAAGCGCTTTTc                              >  1:498766/1‑141 (MQ=255)
                                                                                                 aaaGAAGACAGACGTTCATCAGTTGTAATTGATGCA‑AAAAAATTATCG‑AAAAAACTGAAGAACAATCTTCAGATAAAAACAAATAATAACAAAGCGCTTGCTAGTACCTCTTAAAAAGATGATGCTAGCAAGCGCTTTTct                             <  2:802917/141‑1 (MQ=255)
                                                                                                  aagcataaagtcGTTCATCAGCTGTTATTGATGCA‑AAAAAATTATCC‑AAAAAACTGAAGAACAATCTTCAGATAAAAACAAATAATAACAAAGCGCCTGCTAGTACCTCTTAAAAAGATGATGCTAGCTCGCGCTTTTcta                            <  2:155727/130‑1 (MQ=255)
                                                                                                     agtacagacGTTCATCAGTTGTAATTGATGCA‑AAAAAATTATCG‑AAAAAACTGAAGAACAATCTTCAGATAAAAACAAATAATAACAAAGCGCTTGCTAGTACCTCTTAAAAAGATGATGCTAGCAAGCGCTTTTctatac                         <  2:474622/138‑1 (MQ=255)
                                                                                                     aagaCAGACGTTCATCAGTTGTAATTGATGCA‑AAAAAATTATCG‑AAAATACTGAAGGACAATCTTCAGATAAAAACAAATAATAACAAAGCGCTTGCTAGTACCTCTTAAAAAGATGATGCTAGCTAGCGCTTTTctatac                         <  1:618272/141‑1 (MQ=255)
                                                                                                        acagacGTTCATCAGTTGTAATTGATGCA‑AAAAAATTATCG‑AAAAAACTGAAGAACAATCTTCAGATAAAAACAAATAATAACAAAGCGCTTGCTAGTACCTCTTAAAAAGATGATGCTAGCAAGCGCTTTTctatactat                      >  2:157095/1‑141 (MQ=255)
                                                                                                          agacGTTCATCAGTTGTAATTGATGCA‑AAAAAATTATCG‑AAAAAACTGAAGAACAATCTTCAGATAAAAACAAATAATAACAAAGCGCTTGCTAGTACCTCTTAAAAAGATGATGCTAGCAAGCGCTTTTCTATCCtatat                    >  1:181988/1‑141 (MQ=255)
                                                                                                          agacGTTCATCAGTTGTAATTGATGCA‑AAAAAATTATCG‑AAAAAACTGAAGAACAATCTTCAGATAAAAACAAATAATAACAAAGCGCTTGCTAGTACCTCTTAAAAAGATGATGCTAGCAAGCGCTTTTCTATACtatat                    >  1:268343/1‑141 (MQ=255)
                                                                                                            acGTTCATCAGTTGTGATTGATGCACAAAAA‑TTATCG‑AAAAAACTGAAGAACAATCTTCAGATAAAAACAAATAATAACAAAGCGCTTGCTAGTACCTCTTAAAAAGATGATGCTAGCAAGCGCTTTTCTATACTatatat                  >  1:421706/1‑141 (MQ=255)
                                                                                                            acGTTCATCAGTTGTAATTGATGCA‑AAAAAATTATCG‑AAAAGACTGAAGAACAATCTTCAGATAAAAACAAATAATAACAAAGCGCATGCTAGTACCTCTTCAAAAGATGATGCTAGCAAGCGCTTTTCTATACtatatct                  >  2:232502/1‑139 (MQ=255)
                                                                                                             cGTTCATCAGTTGTAATTGCTGCATAACAA‑TTATCG‑AAAAAACTGAAGAACAATCTTCAGATAAAAACAAATAATAACAAAGCGCTTGCTAGTACCTCTTAAAAAGATGATGCTAGAAAGCGCTTTTCTATACtatatagt                 >  2:180447/1‑139 (MQ=255)
                                                                                                             cGTTCATCAGTTGTAATTGATGCAAAAAAA‑TTATCG‑AAAAAACTGAAGAACAATCTTCAGATAAAAACAAATAATAACAAAGCGCTTGCTAGTACCTCTTAAAAAGATGATGCTAGCAAGCGCTTTTCTATACTATAtatt                 >  2:250005/1‑141 (MQ=255)
                                                                                                                 catcaGTTGTAATTGATGCA‑AAAAAATTATCG‑AAAAAACTGAAGAACAATCTTCAGATAAAAACAAATAATAACAAAGCGCTTGCTAGTACCTCTTAAAAAGATGATGCTAGCAAGCGCTTTTCTATACTATATATTAttt             >  1:324568/1‑141 (MQ=255)
                                                                                                                   tcaGTTGTAATTGATGCA‑AAAAAATTATCG‑AAAAAACTGAAGAACAATCTTCAGATAAAAACAAATAATAACAAAGCGCTTGCTAGTACCTCTTAAAAAGATGATGCTAGCAAGCGCTTTTCTATACTATATATTCttttt           >  1:139023/1‑141 (MQ=255)
                                                                                                                     aGTTGTAATTGATGCAAAAAAA‑TTATCG‑AAAAAACTGAAGAACAATCTTCAGATAAAAACAAATAATAACAAAGCGCTCGCTAGTACCTCTTAAAAAGATGATGCTAGCAAGCGCTTTTCTATACTATATATTATTTTTCt         >  1:526299/1‑141 (MQ=255)
                                                                                                                           aaTTGATGCA‑AAAAAATTATCG‑AAAAAACTGAAGAACAATCTTCAGATAAAAACAAATAATAACAAAGCGCTTGCTAGTACCTCTTAAAAAGATGATGCTAGCAAGCGCTTTTCTATACTATATATTATTTTTCTAAAAtt   <  1:387033/141‑1 (MQ=255)
                                                                                                                            aTTGATGCA‑AAAAAATTATCG‑AACAAACTGAAGAACAATCTTCAGATAAAAACAAATAATAACAAAGCGCTTGCTAGTACCTCTTAAAAAGATGATGCTAGCAAGCGCTTTTCTATACTATATATTATTTTTCTAAAAttt  <  1:635854/141‑1 (MQ=255)
                                                                                                                            aTTGATGCA‑AAAAAATTATCG‑AAAAAACTGAAGAACAATCTTCAGATAAAAACAAATAATAACAAAGCGCTTGCTAGTACCTCTTAAAAAGAGGATGCTAGCAAGCGCTTTTCTATACTATATATTATTTTTCTAAAAttt  >  1:123535/1‑141 (MQ=255)
                                                                                                                                     |                                                                                                                                     
AGCAGAATCAGTTAAACAAGCACCACAAAGTGACGATTTAACAAACGATTCAAATGAAGATGAAATAGAGCAATCATTAAAAGAACCTGCGACTTATAAAGAAGACAGACGTTCATCAGTTGTAATTGATGCAGAAAAACATATCG‑AAAAAACTGAAGAACAATCTTCAGATAAAAACAAATAATAACAAAGCGCTTGCTAGTACCTCTTAAAAAGATGATGCTAGCAAGCGCTTTTCTATACTATATATTATTTTTCTAAAATTT  >  CP000730/2455559‑2455824

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑

GATK/CNVnator alignment

N/A